Query 033046
Match_columns 128
No_of_seqs 108 out of 412
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o0q_A Hypothetical protein CC 100.0 1.1E-45 3.6E-50 267.4 4.8 108 11-125 2-110 (115)
2 1wfx_A Probable RNA 2'-phospho 91.3 0.24 8.1E-06 37.7 4.5 87 7-112 88-177 (186)
3 1luz_A Protein K3, protein K2; 49.1 14 0.00046 24.1 2.9 34 39-74 36-73 (88)
4 2wz9_A Glutaredoxin-3; protein 25.4 26 0.00087 23.7 1.2 69 1-75 2-73 (153)
5 1kl9_A Eukaryotic translation 23.4 33 0.0011 25.3 1.6 35 39-74 41-78 (182)
6 1r26_A Thioredoxin; redox-acti 23.3 60 0.0021 21.2 2.8 63 7-75 15-78 (125)
7 1i0v_A RNAse T1, guanyl-specif 21.7 73 0.0025 21.7 3.0 11 87-97 34-44 (104)
8 1fus_A Ribonuclease F1; hydrol 20.4 83 0.0028 21.5 3.1 33 87-122 34-67 (106)
9 3zzx_A Thioredoxin; oxidoreduc 17.9 45 0.0016 21.4 1.2 60 12-76 1-62 (105)
10 1te7_A Hypothetical UPF0267 pr 15.0 1.5E+02 0.0051 19.5 3.3 29 39-72 73-101 (103)
No 1
>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative, northeast structural genomics consortium, NESG, structural genomics; 1.80A {Caulobacter vibrioides} SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A
Probab=100.00 E-value=1.1e-45 Score=267.35 Aligned_cols=108 Identities=33% Similarity=0.588 Sum_probs=104.4
Q ss_pred ceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCCCCceEEeecCCCCC
Q 033046 11 EFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNS 90 (128)
Q Consensus 11 ~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L~~~l~wE~~~gg~~ 90 (128)
++||||+++++|++++++|.|+++++|++||||||||++||..|+++||++ +++|+||+||+++|+++||||++++|++
T Consensus 2 ~~Iy~I~~~~~W~~a~~~g~y~g~~ld~~dGFIH~St~~Qv~~ta~~~f~~-~~~L~lL~id~~~l~~~l~wE~~~~g~l 80 (115)
T 2o0q_A 2 TLIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWFRG-QANLVLLAVEAEPLGEDLKWEASRGGAR 80 (115)
T ss_dssp CEEEEEEEHHHHHHHHHHTEECCCHHHHHHTSEECEEHHHHHHHHHHHCTT-CCSEEEEEEESGGGCTTEEEEECGGGCE
T ss_pred CEEEEECCHHHHHHhHHcCCCCCccccccCCeEECCCHHHHHHHHHHHcCC-CCCEEEEEEcHHHCCCceEEecCCCCCc
Confidence 589999999999999999999999999889999999999999999999999 9999999999999999999999999999
Q ss_pred CceeeCCCCCCCCCCccceEEEEEeec-CCCeeeec
Q 033046 91 FPHFYGPSRSFTPLPLDVVTKADKLSL-SDGRFSCS 125 (128)
Q Consensus 91 FPHiYG~~~~~~~Lp~~aV~~v~~l~~-~dG~f~~~ 125 (128)
||||||+ ||++||++|.++++ .||+|.++
T Consensus 81 FPHlYG~------L~~~aV~~v~~~~~~~dG~~~~p 110 (115)
T 2o0q_A 81 FPHLYRP------LLVSEVTREADLDLDADGVPQLG 110 (115)
T ss_dssp EEEESSC------EEGGGEEEEEECCBCTTSCBCCH
T ss_pred ccccCCC------CChHHeEEEEeeeECCCCcccCc
Confidence 9999998 99999999999997 69999875
No 2
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=91.35 E-value=0.24 Score=37.67 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=58.5
Q ss_pred cCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccchhcH-HHHHHhhcCCCCCcEEEEEEcCCCC-CCceEEee
Q 033046 7 EERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQV-QPTLQNFFLNSKEDLYLLQIGAKKL-GDGLIYEL 84 (128)
Q Consensus 7 ~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~~Qv-~~va~~ff~~~~~~lvlL~ID~~~L-~~~l~wE~ 84 (128)
...|..+||=+....|+...+.| +.+. .--+||||+...- ..+..|. . +..++|.||..+. .+.++|-.
T Consensus 88 ~~~P~~lyHGT~~~~~~~I~~~G-L~~m----~R~hVHLs~~~~~a~~vG~R~-~---~~~V~i~Id~~~a~~~Gi~fy~ 158 (186)
T 1wfx_A 88 GEPPPILYHGTTEEALPLIMERG-IMRG----RRLKVHLTSSLEDAVSTGRRH-G---NLVAVLLVDVECLRRRGLKVER 158 (186)
T ss_dssp SCCCSEEEECCBGGGHHHHHHHC-BCCC----SSSSEEEESCHHHHHHHHTTS-S---SSBEEEEEEHHHHHHTTCCCEE
T ss_pred CCCCCEEEEeCCHHHHHHHHHhC-CCCC----CCCEEEEecCCCCCeEeeccC-C---CccEEEEEcHHHHHhCCCEEEE
Confidence 44568999999999999999999 4444 2457999974332 2334442 2 2578999998654 56788877
Q ss_pred cCCC-CCCceeeCCCCCCCCCCccceEEE
Q 033046 85 VDGL-NSFPHFYGPSRSFTPLPLDVVTKA 112 (128)
Q Consensus 85 ~~gg-~~FPHiYG~~~~~~~Lp~~aV~~v 112 (128)
+.+| .+=+ . +|.+-+..+
T Consensus 159 s~ngV~Lt~----~------VP~~y~~~v 177 (186)
T 1wfx_A 159 MSKTVYTVD----W------VPPECIAEV 177 (186)
T ss_dssp CSSSEEEES----C------BCGGGEEEE
T ss_pred eCCcEEEeC----C------cCHHHheec
Confidence 7666 3333 3 677766643
No 3
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=49.07 E-value=14 Score=24.07 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCCeEecc-ch--hcHHHHHHhhcCCCCC-cEEEEEEcCC
Q 033046 39 SSGCFHLS-KL--DQVQPTLQNFFLNSKE-DLYLLQIGAK 74 (128)
Q Consensus 39 ~dGFIH~S-t~--~Qv~~va~~ff~~~~~-~lvlL~ID~~ 74 (128)
.+|+||.| .. +.+...-+.+ -| +. .+.++++|.+
T Consensus 36 ~eGLvhis~el~~~~~~~~~~~~-~G-d~V~VkV~~vd~~ 73 (88)
T 1luz_A 36 FEAILAESVKMHMDRYVEYRDKL-VG-KTVKVKVIRVDYT 73 (88)
T ss_dssp SEEEEGGGSSCCHHHHHHHHHHH-TT-CEEEEEEEEEETT
T ss_pred eEEEEEeeHHhCcccccCHhHEe-CC-CEEEEEEEEEECC
Confidence 58999999 53 4555555555 55 32 4566777764
No 4
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=25.44 E-value=26 Score=23.69 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=34.4
Q ss_pred CccccccCCCceEEEecChhhHHHHHhC--CCCCCCCCCCCCCeEeccc-hhcHHHHHHhhcCCCCCcEEEEEEcCCC
Q 033046 1 MAASAEEERGEFVYRISTASEWEELQKN--GSTFGGELDKSSGCFHLSK-LDQVQPTLQNFFLNSKEDLYLLQIGAKK 75 (128)
Q Consensus 1 ~~~~~~~~~~~~iyhI~~~~~W~~a~~~--G~~~~~~ld~~dGFIH~St-~~Qv~~va~~ff~~~~~~lvlL~ID~~~ 75 (128)
||+.+.+.....+..|.+.++|+..... |...--.+- +..+-+|-. ...+..+++.+ .++.+++||.+.
T Consensus 2 ~a~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~~~ 73 (153)
T 2wz9_A 2 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFW-APWAPQCAQMNEVMAELAKEL-----PQVSFVKLEAEG 73 (153)
T ss_dssp ----------CCSEEECSHHHHHHHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEETTT
T ss_pred ccccccccccCCeEEcCCHHHHHHHHHhcCCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHc-----CCeEEEEEECCC
Confidence 4555555556678889999999988764 322111222 344555543 22344444442 358888888765
No 5
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=23.43 E-value=33 Score=25.35 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCCeEeccch--hcHHHHHHhhcCCCCC-cEEEEEEcCC
Q 033046 39 SSGCFHLSKL--DQVQPTLQNFFLNSKE-DLYLLQIGAK 74 (128)
Q Consensus 39 ~dGFIH~St~--~Qv~~va~~ff~~~~~-~lvlL~ID~~ 74 (128)
-+|+||.|.. ..+..+-+.|--| +. .+.++.+|..
T Consensus 41 ~eGLvhiSels~~~v~~~~~~~~vG-d~V~VkVl~vD~~ 78 (182)
T 1kl9_A 41 IEGMILLSELSRRRIRSINKLIRIG-RNECVVVIRVDKE 78 (182)
T ss_dssp EEEEEEGGGC------------CTT-CEEEEEEEEEETT
T ss_pred cEEEEEHHHCCCcccCCHHHhcCCC-CEEEEEEEEEECC
Confidence 5899999964 3444444433334 22 3566777764
No 6
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=23.30 E-value=60 Score=21.17 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=38.7
Q ss_pred cCCCceEEEecChhhHHHHHhCCCCCCCCCCCCCCeEeccch-hcHHHHHHhhcCCCCCcEEEEEEcCCC
Q 033046 7 EERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKL-DQVQPTLQNFFLNSKEDLYLLQIGAKK 75 (128)
Q Consensus 7 ~~~~~~iyhI~~~~~W~~a~~~G~~~~~~ld~~dGFIH~St~-~Qv~~va~~ff~~~~~~lvlL~ID~~~ 75 (128)
+.+..|+..|.+.++|+++...+...--.+- ++.+-+|-.. ..+..+++.| .++.++.||.+.
T Consensus 15 ~~~~~mv~~l~~~~~f~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~-----~~v~~~~vd~d~ 78 (125)
T 1r26_A 15 RARYPSVVDVYSVEQFRNIMSEDILTVAWFT-AVWCGPCKTIERPMEKIAYEF-----PTVKFAKVDADN 78 (125)
T ss_dssp SSCCSCCEEECCHHHHHHHHHSSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC-----TTSEEEEEETTT
T ss_pred eccccceEECCCHHHHHHHHccCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC-----CCCEEEEEECCC
Confidence 3445678888888999998866643222233 3555666433 3444555543 258888998864
No 7
>1i0v_A RNAse T1, guanyl-specific ribonuclease T1; stability, metal binding, 2'GMP, hydrolase; HET: 2GP; 1.23A {Aspergillus oryzae} SCOP: d.1.1.4 PDB: 1bvi_A* 1gsp_A* 1bu4_A* 1i0x_A* 1rga_A* 1rgc_A* 1rnt_A* 1ygw_A 2bu4_A* 2gsp_A* 2rnt_A* 3bu4_A* 3gsp_A* 3rnt_A 3urp_A* 4bu4_A* 4gsp_A* 5bu4_A* 5gsp_A* 5rnt_A* ...
Probab=21.73 E-value=73 Score=21.74 Aligned_cols=11 Identities=55% Similarity=1.005 Sum_probs=8.5
Q ss_pred CCCCCceeeCC
Q 033046 87 GLNSFPHFYGP 97 (128)
Q Consensus 87 gg~~FPHiYG~ 97 (128)
|+..|||-|+.
T Consensus 34 G~~~YPH~y~N 44 (104)
T 1i0v_A 34 GSNSYPHKYNN 44 (104)
T ss_dssp TTTTBSEEECC
T ss_pred CCCCCCceecC
Confidence 46788999974
No 8
>1fus_A Ribonuclease F1; hydrolase(endoribonuclease); 1.30A {Gibberella fujikuroi} SCOP: d.1.1.4 PDB: 1fut_A* 1rck_A* 1rcl_A*
Probab=20.42 E-value=83 Score=21.53 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=17.0
Q ss_pred CCCCCceeeCCCCCCCCCCccceEEEEEee-cCCCee
Q 033046 87 GLNSFPHFYGPSRSFTPLPLDVVTKADKLS-LSDGRF 122 (128)
Q Consensus 87 gg~~FPHiYG~~~~~~~Lp~~aV~~v~~l~-~~dG~f 122 (128)
|+..|||-|+. ++.++...-..-.+++ ..+|.|
T Consensus 34 G~~~YPH~y~N---~e~~~F~c~g~~~EfPi~~~g~Y 67 (106)
T 1fus_A 34 GSSTYPHTYNN---YEGFDFPVDGPYQEFPIKSGGVY 67 (106)
T ss_dssp TTSCCSEEECC---TTCCCCSSCSCEEEEECCTTSSC
T ss_pred CCCCCCccccC---CCCccccCCCcceEcccccCCcc
Confidence 55888999974 4444443222233444 234444
No 9
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=17.86 E-value=45 Score=21.42 Aligned_cols=60 Identities=13% Similarity=0.311 Sum_probs=33.4
Q ss_pred eEEEecChhhHHHHHhC-C-CCCCCCCCCCCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEcCCCC
Q 033046 12 FVYRISTASEWEELQKN-G-STFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKL 76 (128)
Q Consensus 12 ~iyhI~~~~~W~~a~~~-G-~~~~~~ld~~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID~~~L 76 (128)
||++|.+.++|++.... + ...--.+= ++.+-|| .++..+.+..-.. ..++.+++||.+.-
T Consensus 1 MV~~i~~~~~f~~~l~~~~~k~vvv~F~-a~wC~~C---~~~~p~~~~~~~~-~~~~~~~~vd~d~~ 62 (105)
T 3zzx_A 1 MVYQVKDQEDFTKQLNEAGNKLVVIDFY-ATWCGPC---KMIAPKLEELSQS-MSDVVFLKVDVDEC 62 (105)
T ss_dssp CCEECCSHHHHHHHHHHTTTSEEEEEEE-CTTCHHH---HHHHHHHHHHHHH-CTTEEEEEEETTTC
T ss_pred CeEEeCCHHHHHHHHHhcCCCEEEEEEE-CCCCCCc---cCCCcchhhhhhc-cCCeEEEEEecccC
Confidence 68999999999987642 1 11001111 2333344 3344444444333 34688999998754
No 10
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=14.97 E-value=1.5e+02 Score=19.48 Aligned_cols=29 Identities=7% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCeEeccchhcHHHHHHhhcCCCCCcEEEEEEc
Q 033046 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIG 72 (128)
Q Consensus 39 ~dGFIH~St~~Qv~~va~~ff~~~~~~lvlL~ID 72 (128)
++|+ +.+.+..+.+++|.+ ..+++++.+.
T Consensus 73 ~EG~----sl~~~~~~~~~iYp~-~~~v~vI~F~ 101 (103)
T 1te7_A 73 QENM----TLTELKKVIADIYPG-QTQFYVIEFK 101 (103)
T ss_dssp HTTS----CHHHHHHHHHHHCSC-CSCEEEEEEE
T ss_pred HcCC----CHHHHHHHHHHHcCC-CCCEEEEEEE
Confidence 5777 788999999999988 6677777653
Done!