Query 033047
Match_columns 128
No_of_seqs 102 out of 211
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05620 DUF788: Protein of un 100.0 6.1E-50 1.3E-54 299.5 16.0 127 1-127 1-128 (170)
2 KOG3269 Predicted membrane pro 100.0 8E-38 1.7E-42 233.2 14.0 127 1-127 1-134 (180)
3 KOG3269 Predicted membrane pro 93.6 0.7 1.5E-05 35.2 8.3 103 2-106 10-120 (180)
4 COG1755 Uncharacterized protei 79.7 10 0.00022 28.7 6.6 76 4-83 32-112 (172)
5 PF14949 ARF7EP_C: ARF7 effect 76.2 1.3 2.8E-05 30.9 0.9 20 67-86 43-62 (103)
6 PF15012 DUF4519: Domain of un 65.8 6.5 0.00014 24.5 2.3 35 4-38 14-48 (56)
7 cd04857 Peptidases_S8_Tripepti 56.6 9.2 0.0002 32.6 2.4 28 62-91 11-41 (412)
8 PRK00259 intracellular septati 52.0 1E+02 0.0022 23.3 9.0 46 17-62 47-93 (179)
9 PF03390 2HCT: 2-hydroxycarbox 48.5 87 0.0019 26.9 7.0 29 57-85 201-231 (414)
10 TIGR00783 ccs citrate carrier 46.3 1.8E+02 0.0038 24.5 8.4 28 56-83 131-160 (347)
11 PF14293 YWFCY: YWFCY protein 41.2 59 0.0013 20.6 3.7 26 11-36 3-28 (61)
12 PF04191 PEMT: Phospholipid me 39.4 1E+02 0.0022 20.1 5.1 26 84-109 40-65 (106)
13 PF03125 Sre: C. elegans Sre G 38.6 77 0.0017 26.0 5.2 24 5-28 237-260 (365)
14 PF04890 DUF648: Family of unk 37.1 57 0.0012 27.2 4.1 29 12-40 57-85 (328)
15 PF13210 DUF4018: Domain of un 36.6 1.1E+02 0.0024 23.3 5.2 21 10-30 91-111 (192)
16 PF04279 IspA: Intracellular s 34.0 2E+02 0.0043 21.5 9.1 49 16-64 46-95 (176)
17 COG0268 RpsT Ribosomal protein 34.0 36 0.00079 23.0 2.1 16 1-16 1-17 (88)
18 PF03607 DCX: Doublecortin; I 29.9 22 0.00048 21.8 0.5 22 69-90 28-49 (60)
19 smart00424 STE STE like transc 29.3 58 0.0012 22.7 2.5 43 61-103 36-87 (111)
20 PF03904 DUF334: Domain of unk 28.3 3.1E+02 0.0066 21.8 8.7 55 6-60 136-212 (230)
21 PF09151 DUF1936: Domain of un 28.2 22 0.00049 19.7 0.2 10 70-79 13-22 (36)
22 PF02200 STE: STE like transcr 27.3 70 0.0015 22.3 2.6 41 62-102 36-85 (110)
23 KOG2489 Transmembrane protein 27.2 3.7E+02 0.008 24.1 7.5 55 5-60 425-479 (592)
24 PF02783 MCR_beta_N: Methyl-co 26.8 20 0.00044 27.3 -0.1 16 73-88 6-21 (182)
25 PF11286 DUF3087: Protein of u 26.7 2.5E+02 0.0054 21.2 5.7 58 6-63 7-68 (165)
26 KOG4850 Uncharacterized conser 26.4 25 0.00054 26.6 0.3 17 70-86 121-137 (190)
27 PF07423 DUF1510: Protein of u 26.3 1.2E+02 0.0025 23.8 4.0 23 15-38 14-36 (217)
28 PF03563 Bunya_G2: Bunyavirus 25.6 1.1E+02 0.0025 24.9 3.9 30 97-126 188-220 (285)
29 PF14023 DUF4239: Protein of u 25.4 2.9E+02 0.0062 20.5 7.1 27 45-71 167-193 (209)
30 PF08153 NGP1NT: NGP1NT (NUC09 24.8 27 0.00058 25.3 0.2 17 67-83 3-19 (130)
31 PF10849 DUF2654: Protein of u 24.7 1E+02 0.0022 20.0 2.8 26 2-27 1-26 (70)
32 COG2917 Intracellular septatio 24.7 1.9E+02 0.0041 22.1 4.7 80 16-106 46-126 (180)
33 PF13239 2TM: 2TM domain 24.0 2E+02 0.0044 18.3 8.1 24 15-38 13-36 (83)
34 COG3493 CitS Na+/citrate sympo 23.4 4.9E+02 0.011 22.5 8.3 31 55-85 216-248 (438)
35 TIGR00680 kdpA K+-transporting 23.1 5.4E+02 0.012 23.2 7.9 58 17-75 258-315 (563)
36 TIGR00029 S20 ribosomal protei 23.0 70 0.0015 21.4 2.0 16 1-16 1-17 (87)
37 PF15048 OSTbeta: Organic solu 22.9 1.2E+02 0.0026 21.9 3.2 36 35-70 24-59 (125)
38 KOG1114 Tripeptidyl peptidase 22.3 46 0.00099 32.0 1.2 28 62-91 69-99 (1304)
39 KOG1583 UDP-N-acetylglucosamin 21.5 1.2E+02 0.0027 25.1 3.4 43 32-78 283-325 (330)
40 CHL00102 rps20 ribosomal prote 20.8 81 0.0018 21.4 1.9 15 1-15 1-16 (93)
41 PF08250 Sperm_act_pep: Sperm- 20.1 51 0.0011 13.6 0.5 9 83-91 1-9 (10)
No 1
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=6.1e-50 Score=299.51 Aligned_cols=127 Identities=40% Similarity=0.718 Sum_probs=123.9
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCcc
Q 033047 1 MANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELI 80 (128)
Q Consensus 1 MA~~s~Kk~a~~N~~~l~~l~~~~~~~n~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~~~G~Lv 80 (128)
|||||+||+++||++++++++++++++|++|+++|+++++++.++++++.++++++|+.+||++|++++||+||++|+|+
T Consensus 1 MA~ks~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~g~Lv 80 (170)
T PF05620_consen 1 MANKSAKKIAEENKATLKFLRLISLAVNILYLLLRLLFRYSSPSFWSWFGYLLFSLPAIFCYYFLEKMARPKYDETGELV 80 (170)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCchHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCee
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cccccCCCCc-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 033047 81 DGGFDMSTGG-ICGYLHDVIYITSFVQVMSILSEKFWYTYLVVVEDVY 127 (128)
Q Consensus 81 ~~G~DL~~~G-l~ey~~DvIylt~~v~~~s~~s~~~W~l~LviP~~a~ 127 (128)
|+|+|||++| ++||+||+||+||+||+++++|+||||+||+||+|++
T Consensus 81 ~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l~LvIP~ya~ 128 (170)
T PF05620_consen 81 DAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWLYLVIPGYAI 128 (170)
T ss_pred cCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 9999999999999999999999999999999999985
No 2
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8e-38 Score=233.23 Aligned_cols=127 Identities=43% Similarity=0.818 Sum_probs=112.0
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Q 033047 1 MANQGAKKRKEENARHMEKLRRLIIACNV------IYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYT 74 (128)
Q Consensus 1 MA~~s~Kk~a~~N~~~l~~l~~~~~~~n~------~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~ 74 (128)
||++++||++.+|++.+-..+..++.++. +|+.++.++++++.|++.|++++++++++.++|++|++|++|+||
T Consensus 1 MA~q~~~Kqat~naK~I~een~~t~~fy~~~~~~~~~~~v~~~f~~s~~T~~~wi~lv~s~l~~g~~y~~m~~mAkpkyd 80 (180)
T KOG3269|consen 1 MANQAKKKQATKNAKHIAEENKITLLFYLNMGANAVYFAVLRLFFYSSVTKTSWIGLVFSSLVYGFAYYFMHSMAKPKYD 80 (180)
T ss_pred CCCcccchhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 78887777777775555555555544444 788888888888899999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCc-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 033047 75 DDGELIDGGFDMSTGG-ICGYLHDVIYITSFVQVMSILSEKFWYTYLVVVEDVY 127 (128)
Q Consensus 75 ~~G~Lv~~G~DL~~~G-l~ey~~DvIylt~~v~~~s~~s~~~W~l~LviP~~a~ 127 (128)
++|+|+|+|.|||++| ++||++|+||+|+++|++++++.||||.||++|++|.
T Consensus 81 d~G~Lld~G~Dln~~g~~~sy~~D~iylt~~v~llsiis~kfw~~lLl~P~~a~ 134 (180)
T KOG3269|consen 81 DDGALLDGGFDLNDEGAICSYVKDAIYLTCFVQLLSIISGKFWASLLLIPIFAG 134 (180)
T ss_pred CCCceeecCcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999866 9999999999999999999999999999999999974
No 3
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=93.62 E-value=0.7 Score=35.16 Aligned_cols=103 Identities=14% Similarity=-0.038 Sum_probs=58.7
Q ss_pred CchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCCC
Q 033047 2 ANQGAKKRKEENARHMEKLRRLII-ACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKP----TYTDD 76 (128)
Q Consensus 2 A~~s~Kk~a~~N~~~l~~l~~~~~-~~n~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP----~y~~~ 76 (128)
|++++|.++|||++++.++.++.+ ++-.....+-+...-+...|.-...-.+......-....|.+-.=- ..|..
T Consensus 10 at~naK~I~een~~t~~fy~~~~~~~~~~~v~~~f~~s~~T~~~wi~lv~s~l~~g~~y~~m~~mAkpkydd~G~Lld~G 89 (180)
T KOG3269|consen 10 ATKNAKHIAEENKITLLFYLNMGANAVYFAVLRLFFYSSVTKTSWIGLVFSSLVYGFAYYFMHSMAKPKYDDDGALLDGG 89 (180)
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCceeecC
Confidence 678999999999999999983322 1112222222333334446666655555555333335666554322 33432
Q ss_pred CCccccc---ccCCCCchhHHHHHHHHHHHHHH
Q 033047 77 GELIDGG---FDMSTGGICGYLHDVIYITSFVQ 106 (128)
Q Consensus 77 G~Lv~~G---~DL~~~Gl~ey~~DvIylt~~v~ 106 (128)
-.+-++| +|+. -..-.-.|++.++.+.+
T Consensus 90 ~Dln~~g~~~sy~~--D~iylt~~v~llsiis~ 120 (180)
T KOG3269|consen 90 FDLNDEGAICSYVK--DAIYLTCFVQLLSIISG 120 (180)
T ss_pred cCCCCCccHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 2555665 4442 35566678888887754
No 4
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.66 E-value=10 Score=28.68 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=46.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc---cc--CCCCC
Q 033047 4 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKP---TY--TDDGE 78 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~l~~~~~~~n~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP---~y--~~~G~ 78 (128)
||+|+--++|.+.+-.+|....... ++--...+.++.|..++++++.-..+..-|..++..|+= |. -++++
T Consensus 32 ~Ga~E~G~~n~~~l~ilH~~~yls~----ivE~~~~~~~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~ 107 (172)
T COG1755 32 KGAKEYGKTNYKLLVILHTAFYLSC----IVEAWLNNTFFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQ 107 (172)
T ss_pred CcchhhCccccchHHHHHHHHHHHH----HHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCce
Confidence 5666667777777777777655543 333344455555666666666666666667777777641 11 24567
Q ss_pred ccccc
Q 033047 79 LIDGG 83 (128)
Q Consensus 79 Lv~~G 83 (128)
++|+|
T Consensus 108 ~v~sg 112 (172)
T COG1755 108 IVRSG 112 (172)
T ss_pred eeccc
Confidence 77766
No 5
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=76.23 E-value=1.3 Score=30.92 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.3
Q ss_pred hhcCcccCCCCCcccccccC
Q 033047 67 AMAKPTYTDDGELIDGGFDM 86 (128)
Q Consensus 67 ~~~rP~y~~~G~Lv~~G~DL 86 (128)
.-..++||++|.|+..|.||
T Consensus 43 ~~~~~~YD~~G~l~~~~~Dl 62 (103)
T PF14949_consen 43 KKKSKHYDEKGRLISNGKDL 62 (103)
T ss_pred ccccccccCCceEeeCCCcc
Confidence 34478999999999999997
No 6
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=65.79 E-value=6.5 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=26.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMII 38 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~l~~~~~~~n~~~~l~~~~~ 38 (128)
+..|++.++|+++-+....+.+++.+.++++..+|
T Consensus 14 K~K~ERk~~~~e~~~kv~tVVlP~l~~~~~~Ivv~ 48 (56)
T PF15012_consen 14 KQKKERKKEMQEAQQKVFTVVLPTLAAVFLFIVVF 48 (56)
T ss_pred HHHHHHHHHHHHHHHhheeEehhHHHHHHHHHhhe
Confidence 45567888999999999999998877666555544
No 7
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=56.60 E-value=9.2 Score=32.60 Aligned_cols=28 Identities=29% Similarity=0.587 Sum_probs=23.1
Q ss_pred HHHHHhhcCcccCCCC---CcccccccCCCCch
Q 033047 62 YQQLSAMAKPTYTDDG---ELIDGGFDMSTGGI 91 (128)
Q Consensus 62 ~~~l~~~~rP~y~~~G---~Lv~~G~DL~~~Gl 91 (128)
..++++ .|+||..| .++|.|.|+.++||
T Consensus 11 ~~f~~~--~p~~dgr~v~iai~dtgvd~~~~~l 41 (412)
T cd04857 11 LRFLQK--YPEYDGRGVLIAILDTGVDPGAPGL 41 (412)
T ss_pred HHHHHH--CcCCCCCCcEEEEecCCCCCCCCcc
Confidence 455666 69999988 58899999998887
No 8
>PRK00259 intracellular septation protein A; Reviewed
Probab=51.96 E-value=1e+02 Score=23.26 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHH
Q 033047 17 MEKLRRLIIACNVIYFVVRMIIFHSTF-TWKHWVGLVLTSVAYAIPY 62 (128)
Q Consensus 17 l~~l~~~~~~~n~~~~l~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~ 62 (128)
+...+.++.+..+.+-....+++++.+ .++|-+.+.+.++....+.
T Consensus 47 v~~m~~i~~~lv~vfGglTl~l~d~~fik~KPtii~~l~a~vll~sl 93 (179)
T PRK00259 47 VEKMQLISLVVVVVFGGLTLVFHDDTFIKWKPTIIYWLFALALLGSQ 93 (179)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCeEeeHHHHHHHHHHHHHHHHH
Confidence 344566677776777777788888776 5777777777777766655
No 9
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=48.48 E-value=87 Score=26.92 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhc--CcccCCCCCccccccc
Q 033047 57 AYAIPYQQLSAMA--KPTYTDDGELIDGGFD 85 (128)
Q Consensus 57 ~~~~~~~~l~~~~--rP~y~~~G~Lv~~G~D 85 (128)
...++=..+++.+ +|+++.||+|++.+.|
T Consensus 201 ~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~ 231 (414)
T PF03390_consen 201 FAIIFAGLLNKLGKKKPKLTGNGQLLKGGDD 231 (414)
T ss_pred HHHHHHHHHHHHhccCCCCCCCceEEeCCcc
Confidence 3333334455554 7999999999999884
No 10
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=46.32 E-value=1.8e+02 Score=24.45 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhc--CcccCCCCCccccc
Q 033047 56 VAYAIPYQQLSAMA--KPTYTDDGELIDGG 83 (128)
Q Consensus 56 ~~~~~~~~~l~~~~--rP~y~~~G~Lv~~G 83 (128)
+...++=..+.+.+ +|+++.+|+|++.+
T Consensus 131 i~AIi~agll~~lG~~~p~ltG~G~L~~~~ 160 (347)
T TIGR00783 131 IFAIICAGLLSRIGKKRPKLNGHGELVRSE 160 (347)
T ss_pred HHHHHHHHHHHHHhccCCCcCCCceEeecC
Confidence 34445555666665 59999999999765
No 11
>PF14293 YWFCY: YWFCY protein
Probab=41.20 E-value=59 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033047 11 EENARHMEKLRRLIIACNVIYFVVRM 36 (128)
Q Consensus 11 ~~N~~~l~~l~~~~~~~n~~~~l~~~ 36 (128)
++|.+.|+..--.+=+++++.+++++
T Consensus 3 eddlr~L~KImdf~R~iSI~~l~ih~ 28 (61)
T PF14293_consen 3 EDDLRALRKIMDFMRAISILFLVIHF 28 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554443333333333334433
No 12
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=39.36 E-value=1e+02 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=19.0
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHH
Q 033047 84 FDMSTGGICGYLHDVIYITSFVQVMS 109 (128)
Q Consensus 84 ~DL~~~Gl~ey~~DvIylt~~v~~~s 109 (128)
..|-++|.+.+.=.=+|+.......+
T Consensus 40 ~~Lvt~G~Y~~vRhPmY~g~~l~~~G 65 (106)
T PF04191_consen 40 QRLVTTGPYRYVRHPMYLGFLLILLG 65 (106)
T ss_pred CcccccCCccCcCChHHHHHHHHHHH
Confidence 34666788888888888887766443
No 13
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=38.63 E-value=77 Score=26.00 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHH
Q 033047 5 GAKKRKEENARHMEKLRRLIIACN 28 (128)
Q Consensus 5 s~Kk~a~~N~~~l~~l~~~~~~~n 28 (128)
|+|=|++||.++++.++++.+.+.
T Consensus 237 s~RFQi~ENir~l~l~~~~vi~~~ 260 (365)
T PF03125_consen 237 SQRFQIKENIRSLKLLKRVVIVIA 260 (365)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999998876553
No 14
>PF04890 DUF648: Family of unknown function (DUF648) ; InterPro: IPR006974 This is a family of hypothetical proteins from Chlamydia pneumoniae.
Probab=37.09 E-value=57 Score=27.17 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033047 12 ENARHMEKLRRLIIACNVIYFVVRMIIFH 40 (128)
Q Consensus 12 ~N~~~l~~l~~~~~~~n~~~~l~~~~~~~ 40 (128)
.=+++||.+..+.+++.++.+++|.++|+
T Consensus 57 t~eKILKILSyll~PivLIAL~lR~lLH~ 85 (328)
T PF04890_consen 57 TIEKILKILSYLLFPIVLIALLLRYLLHR 85 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999985
No 15
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=36.61 E-value=1.1e+02 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033047 10 KEENARHMEKLRRLIIACNVI 30 (128)
Q Consensus 10 a~~N~~~l~~l~~~~~~~n~~ 30 (128)
+.+||+.+|+.+.+++++.-+
T Consensus 91 ~NrnQqllRF~SIitIG~~S~ 111 (192)
T PF13210_consen 91 ANRNQQLLRFISIITIGIMSI 111 (192)
T ss_pred cCcchhhhhHHHHHHHHHHHH
Confidence 457999999999888876433
No 16
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=34.04 E-value=2e+02 Score=21.46 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHH
Q 033047 16 HMEKLRRLIIACNVIYFVVRMIIFHSTF-TWKHWVGLVLTSVAYAIPYQQ 64 (128)
Q Consensus 16 ~l~~l~~~~~~~n~~~~l~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ 64 (128)
.+.....++.+..+++-.+..+++++.+ .++|-+...+.++....+...
T Consensus 46 ~v~~~~~is~~lv~vfG~lTl~~~d~~fik~KpTii~~l~a~~ll~s~~~ 95 (176)
T PF04279_consen 46 KVPKMQWISLVLVLVFGGLTLLFHDPRFIKWKPTIINWLFAAVLLGSLLF 95 (176)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhCCcceeehhHHHHHHHHHHHHHHHHHh
Confidence 4555667777777777778888888776 577777777777777776665
No 17
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=33.96 E-value=36 Score=23.01 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=13.4
Q ss_pred CCch-hHhhHHHHHHHH
Q 033047 1 MANQ-GAKKRKEENARH 16 (128)
Q Consensus 1 MA~~-s~Kk~a~~N~~~ 16 (128)
|||- |+||+.++|++.
T Consensus 1 MAN~~SA~KR~r~~~kr 17 (88)
T COG0268 1 MANIKSAKKRARQSEKR 17 (88)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 8888 999999988764
No 18
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=29.89 E-value=22 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=16.6
Q ss_pred cCcccCCCCCcccccccCCCCc
Q 033047 69 AKPTYTDDGELIDGGFDMSTGG 90 (128)
Q Consensus 69 ~rP~y~~~G~Lv~~G~DL~~~G 90 (128)
.|--|+.+|+.|++-.||..++
T Consensus 28 Vr~lyt~~G~~V~~l~~l~dg~ 49 (60)
T PF03607_consen 28 VRKLYTLDGKRVKSLDELEDGG 49 (60)
T ss_dssp -SEEEETTSSEESSGGGS-TTE
T ss_pred cceEECCCCCEeCCHHHHCCCC
Confidence 3446889999999999998665
No 19
>smart00424 STE STE like transcription factors.
Probab=29.32 E-value=58 Score=22.68 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHhhcCcccC----CCC-----CcccccccCCCCchhHHHHHHHHHHH
Q 033047 61 PYQQLSAMAKPTYT----DDG-----ELIDGGFDMSTGGICGYLHDVIYITS 103 (128)
Q Consensus 61 ~~~~l~~~~rP~y~----~~G-----~Lv~~G~DL~~~Gl~ey~~DvIylt~ 103 (128)
|.+-+++.|||.-+ |+| +=+++|.|-.-++--+-..|.+|=..
T Consensus 36 ~~~rf~~fgR~v~~~KKfEEGiFSDLRnLK~g~DA~LE~PkS~fL~fL~kN~ 87 (111)
T smart00424 36 LVYRFQAFGRPVVNRKKFEEGIFSDLRNLKCGTDATLEEPKSPFLDFLFKNM 87 (111)
T ss_pred HHHHHHHcCcchhhhhhhhhhhhhhhhcCCCCCcccccCCccHHHHHHHHcc
Confidence 34459999999887 345 56788999764444455666666443
No 20
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.27 E-value=3.1e+02 Score=21.81 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--------------------CchhHHHHHHHHHHHHHHHH
Q 033047 6 AKKRKEENARHMEKLRRLIIACNVIYFVVRMIIF--H--------------------STFTWKHWVGLVLTSVAYAI 60 (128)
Q Consensus 6 ~Kk~a~~N~~~l~~l~~~~~~~n~~~~l~~~~~~--~--------------------~s~~~~~~~~~~~~~~~~~~ 60 (128)
-|+-.++++++.+.+.....+.-+++.++.++.. + .|=+.+.++++....+|+.+
T Consensus 136 vK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 136 VKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3555666667777766665555444444433331 1 11145666777777777766
No 21
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=28.18 E-value=22 Score=19.67 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=6.6
Q ss_pred CcccCCCCCc
Q 033047 70 KPTYTDDGEL 79 (128)
Q Consensus 70 rP~y~~~G~L 79 (128)
.|.||++|++
T Consensus 13 ~pvy~~kgei 22 (36)
T PF09151_consen 13 EPVYNQKGEI 22 (36)
T ss_dssp EEEE-TTS-E
T ss_pred EEeecCCCcE
Confidence 5899999964
No 22
>PF02200 STE: STE like transcription factor; InterPro: IPR003120 This family consists of transcription factors related to STE and is found associated with the C2H2 zinc finger in some proteins.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.25 E-value=70 Score=22.29 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHhhcCcccC----CCC-----CcccccccCCCCchhHHHHHHHHHH
Q 033047 62 YQQLSAMAKPTYT----DDG-----ELIDGGFDMSTGGICGYLHDVIYIT 102 (128)
Q Consensus 62 ~~~l~~~~rP~y~----~~G-----~Lv~~G~DL~~~Gl~ey~~DvIylt 102 (128)
.+-++..|||..+ |+| +=+++|.|-.-+.--+-..|.+|=.
T Consensus 36 ~~rf~~fgR~v~~~KKFEEGiFSDLRnLK~g~dA~LE~PkS~fL~fL~kn 85 (110)
T PF02200_consen 36 VYRFEAFGRPVINRKKFEEGIFSDLRNLKPGVDATLEEPKSPFLDFLYKN 85 (110)
T ss_pred HHHHHHhCchhhhhcchhhhhhhhhhccCCCCCceecccccHHHHHHHHc
Confidence 4459999999887 345 5678899865444445566666543
No 23
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=27.15 E-value=3.7e+02 Score=24.12 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=37.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 033047 5 GAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAI 60 (128)
Q Consensus 5 s~Kk~a~~N~~~l~~l~~~~~~~n~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~ 60 (128)
+.-|..+=-.++.|.+.....+..+.+.++.+++-+-. +|-.|+.-.+.+.++.+
T Consensus 425 sE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hK-sWYSWvLn~l~~~vy~F 479 (592)
T KOG2489|consen 425 SESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHK-SWYSWVLNSLYNGVYAF 479 (592)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cHHHHHHHHHHhHHHHH
Confidence 44455666678999999999888888888877775433 66666655555544443
No 24
>PF02783 MCR_beta_N: Methyl-coenzyme M reductase beta subunit, N-terminal domain; InterPro: IPR022680 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. This entry represents the N-terminal domain from the beta subunit of methyl-conenzyme M reductase (MCR). The N-terminal domain has an alpha/beta ferredoxin-like fold. This entry is found in assocation with PF02241 from PFAM. ; GO: 0050524 coenzyme-B sulfoethylthiotransferase activity; PDB: 3SQG_B 1MRO_E 1HBM_B 3M30_B 3M32_B 1HBU_B 3M2U_E 3M2V_E 3M1V_B 1HBO_B ....
Probab=26.81 E-value=20 Score=27.29 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.6
Q ss_pred cCCCCCcccccccCCC
Q 033047 73 YTDDGELIDGGFDMST 88 (128)
Q Consensus 73 y~~~G~Lv~~G~DL~~ 88 (128)
||++|+|++++.+|+.
T Consensus 6 Ydd~Gkll~s~VpLea 21 (182)
T PF02783_consen 6 YDDRGKLLESNVPLEA 21 (182)
T ss_dssp E-TTS-EEEEEEEGGG
T ss_pred ccCCCceeccCCCHHH
Confidence 8999999999999973
No 25
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.69 E-value=2.5e+02 Score=21.15 Aligned_cols=58 Identities=7% Similarity=-0.043 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHHHHHHH
Q 033047 6 AKKRKEENARHMEKLRRLII--ACNVIYFVVRMIIFHSTFTW--KHWVGLVLTSVAYAIPYQ 63 (128)
Q Consensus 6 ~Kk~a~~N~~~l~~l~~~~~--~~n~~~~l~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~ 63 (128)
.|++.++|......-....+ .+-++.-++.-+|..++-+- +..++..+..+.+.+..+
T Consensus 7 dk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~ 68 (165)
T PF11286_consen 7 DKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLR 68 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHH
Confidence 35555555444333322222 22333334445555444333 333555555555544444
No 26
>KOG4850 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.41 E-value=25 Score=26.64 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.9
Q ss_pred CcccCCCCCcccccccC
Q 033047 70 KPTYTDDGELIDGGFDM 86 (128)
Q Consensus 70 rP~y~~~G~Lv~~G~DL 86 (128)
..+||+.|.+...|.||
T Consensus 121 ~~~YD~~G~~~~~G~Dl 137 (190)
T KOG4850|consen 121 TGKYDVTGKGQTLGFDL 137 (190)
T ss_pred ccccccccceeeccccH
Confidence 35799999999999997
No 27
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.29 E-value=1.2e+02 Score=23.79 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033047 15 RHMEKLRRLIIACNVIYFVVRMII 38 (128)
Q Consensus 15 ~~l~~l~~~~~~~n~~~~l~~~~~ 38 (128)
.+|+.+ ++++.+.++.+...+++
T Consensus 14 ~iLNia-I~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 14 KILNIA-IGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhHHHH-HHHHHHHHHHHhhhhee
Confidence 344433 33333334443443333
No 28
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=25.58 E-value=1.1e+02 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHHHHH---HHHHhhhHHHHHHHHhhhhc
Q 033047 97 DVIYITSFVQ---VMSILSEKFWYTYLVVVEDV 126 (128)
Q Consensus 97 DvIylt~~v~---~~s~~s~~~W~l~LviP~~a 126 (128)
.+|+++.+.. ++.++=.|-+..||++|+|.
T Consensus 188 ElIil~~~~~~~~i~~~IltktYi~YlliPiF~ 220 (285)
T PF03563_consen 188 ELIILTCLTLIIFIFLIILTKTYICYLLIPIFY 220 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544 33444578999999999873
No 29
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=25.36 E-value=2.9e+02 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 033047 45 WKHWVGLVLTSVAYAIPYQQLSAMAKP 71 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~l~~~~rP 71 (128)
..+.+..++.++....+...+..+.+|
T Consensus 167 ~~~~~~~~l~a~~i~~~l~li~~ld~P 193 (209)
T PF14023_consen 167 RAHLIAIALFAASIALALFLILDLDNP 193 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444455555555556666788888
No 30
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=24.80 E-value=27 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.3
Q ss_pred hhcCcccCCCCCccccc
Q 033047 67 AMAKPTYTDDGELIDGG 83 (128)
Q Consensus 67 ~~~rP~y~~~G~Lv~~G 83 (128)
+.|+|++|++|+++.+.
T Consensus 3 ~~gk~~Rn~~Gkiik~a 19 (130)
T PF08153_consen 3 KSGKPKRNRKGKIIKAA 19 (130)
T ss_pred CCCCcccCCCCCEeech
Confidence 45799999999998873
No 31
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=24.70 E-value=1e+02 Score=20.04 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.4
Q ss_pred CchhHhhHHHHHHHHHHHHHHHHHHH
Q 033047 2 ANQGAKKRKEENARHMEKLRRLIIAC 27 (128)
Q Consensus 2 A~~s~Kk~a~~N~~~l~~l~~~~~~~ 27 (128)
|.+-++|+.++|.+-++.|+.=+=-+
T Consensus 1 a~kkA~K~lkKN~rEI~RL~~HAe~a 26 (70)
T PF10849_consen 1 AEKKAKKILKKNRREIKRLKKHAEEA 26 (70)
T ss_pred CchHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56778999999999999998765544
No 32
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=24.67 E-value=1.9e+02 Score=22.12 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCcccccccCCCCchhHH
Q 033047 16 HMEKLRRLIIACNVIYFVVRMIIFHSTF-TWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMSTGGICGY 94 (128)
Q Consensus 16 ~l~~l~~~~~~~n~~~~l~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~~~G~Lv~~G~DL~~~Gl~ey 94 (128)
.+.....++..+..++-.+..+++++.+ .|++-+.+.+.++....+...+. ||-. ++.+ |.+++ +.|-
T Consensus 46 kv~km~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~Llgs~~~~~---k~li---k~~l--g~~l~---Lp~~ 114 (180)
T COG2917 46 KVEKMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLGSQFLFK---KPLI---KRML--GKELQ---LPEE 114 (180)
T ss_pred hhHHHHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHHHHHHHHhc---CcHH---HHHH--HhhhC---CCHH
Confidence 4445566677776777788888888776 57777878888887776555443 3321 0111 44454 4455
Q ss_pred HHHHHHHHHHHH
Q 033047 95 LHDVIYITSFVQ 106 (128)
Q Consensus 95 ~~DvIylt~~v~ 106 (128)
.+--+=+-|..-
T Consensus 115 ~W~~Ln~~W~~F 126 (180)
T COG2917 115 VWRKLNLRWALF 126 (180)
T ss_pred HHHHHHHHHHHH
Confidence 565555555554
No 33
>PF13239 2TM: 2TM domain
Probab=23.99 E-value=2e+02 Score=18.34 Aligned_cols=24 Identities=4% Similarity=0.180 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033047 15 RHMEKLRRLIIACNVIYFVVRMII 38 (128)
Q Consensus 15 ~~l~~l~~~~~~~n~~~~l~~~~~ 38 (128)
+.+..-...-+++|++.+.+..+.
T Consensus 13 k~fy~Hl~~y~ivn~~l~~in~~~ 36 (83)
T PF13239_consen 13 KGFYRHLAVYLIVNSFLIFINLFT 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334433445556777776776644
No 34
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=23.41 E-value=4.9e+02 Score=22.55 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhc--CcccCCCCCccccccc
Q 033047 55 SVAYAIPYQQLSAMA--KPTYTDDGELIDGGFD 85 (128)
Q Consensus 55 ~~~~~~~~~~l~~~~--rP~y~~~G~Lv~~G~D 85 (128)
++....|-..+++.+ +|.++.+|||+++++.
T Consensus 216 NvfAIi~aall~~iG~K~psltGnG~Lv~~~~~ 248 (438)
T COG3493 216 NVFAIICAALLNKIGKKKPSLTGNGELVRSKSK 248 (438)
T ss_pred HHHHHHHHHHHHHHcccCCCccCCceEEecccc
Confidence 345556666777777 4899999999996543
No 35
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=23.15 E-value=5.4e+02 Score=23.17 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcccCC
Q 033047 17 MEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTD 75 (128)
Q Consensus 17 l~~l~~~~~~~n~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~~ 75 (128)
+..+....++...++..-|+.-+++. .+--+..-.+..++....-++-|..+.|..++
T Consensus 258 ~e~~~illIP~al~~~fG~mv~~~rq-g~~i~~~m~~lf~~~~~~~~~~E~~gnp~l~~ 315 (563)
T TIGR00680 258 VETVAIMVIPAALCFAFGIMAGDRRQ-GWLILWMMFIIYGILIAIAMVGEFQGNPLLNA 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence 44455566677677777776665543 32222112222233333445589999998864
No 36
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=22.97 E-value=70 Score=21.42 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=11.2
Q ss_pred CCc-hhHhhHHHHHHHH
Q 033047 1 MAN-QGAKKRKEENARH 16 (128)
Q Consensus 1 MA~-~s~Kk~a~~N~~~ 16 (128)
||| +|++|+.++|++.
T Consensus 1 MaN~kSa~KR~r~~~kr 17 (87)
T TIGR00029 1 MANIKSAEKRIRQNEKR 17 (87)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 554 6888888877654
No 37
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.91 E-value=1.2e+02 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033047 35 RMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAK 70 (128)
Q Consensus 35 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~r 70 (128)
+++||....+-|.+-.+++.+++.++....|.+..+
T Consensus 24 lW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 24 LWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred HHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 356666655778888888888888887777665554
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=46 Score=31.96 Aligned_cols=28 Identities=36% Similarity=0.703 Sum_probs=22.6
Q ss_pred HHHHHhhcCcccCCCC---CcccccccCCCCch
Q 033047 62 YQQLSAMAKPTYTDDG---ELIDGGFDMSTGGI 91 (128)
Q Consensus 62 ~~~l~~~~rP~y~~~G---~Lv~~G~DL~~~Gl 91 (128)
+-+|++ -|.||..| .+.|.|.|.+.+||
T Consensus 69 ~~FL~k--yPeYDGRgV~IaIlDtGvDP~apGl 99 (1304)
T KOG1114|consen 69 YEFLKK--YPEYDGRGVTIAILDTGVDPSAPGL 99 (1304)
T ss_pred HHHHHh--CcCCCCCceEEEEeecCCCCCCCCc
Confidence 455666 59999988 57899999998886
No 39
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=21.52 E-value=1.2e+02 Score=25.08 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=26.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCC
Q 033047 32 FVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGE 78 (128)
Q Consensus 32 ~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~~~G~ 78 (128)
+++..+++++.++.++|++-.+...-.. -+-+..++|+ ..+|+
T Consensus 283 Ll~SiiyF~Npft~~h~lGa~lVF~Gt~---~fa~~~~~~~-~~k~~ 325 (330)
T KOG1583|consen 283 LLFSIIYFENPFTPWHWLGAALVFFGTL---LFANVWNHPK-ATKGA 325 (330)
T ss_pred HhheeeEecCCCCHHHHHHHHHHHHHHH---HHHHHHcCcc-ccccc
Confidence 3444566777889999988766554433 2345667888 33443
No 40
>CHL00102 rps20 ribosomal protein S20
Probab=20.77 E-value=81 Score=21.40 Aligned_cols=15 Identities=47% Similarity=0.503 Sum_probs=10.7
Q ss_pred CCc-hhHhhHHHHHHH
Q 033047 1 MAN-QGAKKRKEENAR 15 (128)
Q Consensus 1 MA~-~s~Kk~a~~N~~ 15 (128)
||| +|++|+.++|++
T Consensus 1 MaN~kSa~KR~rq~ek 16 (93)
T CHL00102 1 MANNKSAIKRIKISER 16 (93)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 554 788888887764
No 41
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=20.05 E-value=51 Score=13.58 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=4.8
Q ss_pred cccCCCCch
Q 033047 83 GFDMSTGGI 91 (128)
Q Consensus 83 G~DL~~~Gl 91 (128)
|.||+.+|+
T Consensus 1 gf~l~GgGV 9 (10)
T PF08250_consen 1 GFSLGGGGV 9 (10)
T ss_pred CcccccCcC
Confidence 456665553
Done!