Query 033047
Match_columns 128
No_of_seqs 102 out of 211
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9u_B Filamin-binding LIM pro 43.2 1.8 6.1E-05 22.0 -1.7 10 1-10 1-10 (26)
2 2vqe_T 30S ribosomal protein S 41.5 11 0.00037 25.4 1.5 16 1-16 6-22 (106)
3 3ehu_C Corticoliberin; G prote 31.7 37 0.0013 16.3 2.1 16 4-19 4-19 (21)
4 4a2n_B Isoprenylcysteine carbo 27.5 82 0.0028 22.6 4.4 39 45-83 76-119 (194)
5 2lwx_A Zuotin; J-protein, mole 26.6 28 0.00096 23.4 1.6 17 4-20 20-36 (108)
6 2rfp_A Putative NTP pyrophosph 25.7 26 0.00088 25.5 1.3 19 64-82 127-149 (171)
7 2rmg_A Urocortin-2; CRF ligand 25.6 40 0.0014 18.5 1.8 15 4-18 22-36 (38)
8 2olm_A Nucleoporin-like protei 24.0 57 0.0019 22.6 2.8 19 4-22 3-21 (140)
9 1go9_A Corticotropin releasing 23.5 63 0.0022 18.1 2.4 16 4-19 25-40 (42)
10 2v2f_A Penicillin binding prot 22.1 25 0.00084 17.0 0.5 11 72-82 9-19 (26)
11 2rmf_A Urocortin, HUCN1; CRF l 22.1 59 0.002 18.0 2.0 14 4-17 24-37 (40)
12 2dnf_A Doublecortin domain-con 22.1 29 0.00099 23.0 0.9 22 69-90 60-81 (108)
No 1
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=43.22 E-value=1.8 Score=21.99 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=7.8
Q ss_pred CCchhHhhHH
Q 033047 1 MANQGAKKRK 10 (128)
Q Consensus 1 MA~~s~Kk~a 10 (128)
||+|.+|+.+
T Consensus 1 ma~kpeKR~a 10 (26)
T 2k9u_B 1 MASKPEKRVA 10 (26)
T ss_dssp CCCCSSSSCE
T ss_pred CCCcchhhee
Confidence 8888888754
No 2
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=41.47 E-value=11 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.7
Q ss_pred CCc-hhHhhHHHHHHHH
Q 033047 1 MAN-QGAKKRKEENARH 16 (128)
Q Consensus 1 MA~-~s~Kk~a~~N~~~ 16 (128)
||| +|+||+.++|++.
T Consensus 6 MAN~KSA~KRirq~ekr 22 (106)
T 2vqe_T 6 PKRNLSALKRHRQSLKR 22 (106)
T ss_dssp --CCCTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 555 7888888887753
No 3
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=31.65 E-value=37 Score=16.28 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.4
Q ss_pred hhHhhHHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHMEK 19 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~ 19 (128)
+.++++|+.|.+.+..
T Consensus 4 Eq~~qQA~~NRk~md~ 19 (21)
T 3ehu_C 4 EQLAQQAHSNRKLMEI 19 (26)
T ss_pred HHHHHHHHHhHHHHHh
Confidence 5678899999887754
No 4
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=27.47 E-value=82 Score=22.57 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhcCc--ccCCCCCccccc
Q 033047 45 WKHWVGLVLTSVAYAI---PYQQLSAMAKP--TYTDDGELIDGG 83 (128)
Q Consensus 45 ~~~~~~~~~~~~~~~~---~~~~l~~~~rP--~y~~~G~Lv~~G 83 (128)
+..+++.++..+...+ +...+.+.-++ +-+++++|++.|
T Consensus 76 ~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G 119 (194)
T 4a2n_B 76 SIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEG 119 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecC
Confidence 3334555444443333 33334333232 223445665555
No 5
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=26.57 E-value=28 Score=23.45 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=13.9
Q ss_pred hhHhhHHHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHMEKL 20 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~l 20 (128)
+++|+..++|++.+|.-
T Consensus 20 eaak~a~kknKRvIR~s 36 (108)
T 2lwx_A 20 QGSKAAKKKNKRAIRNS 36 (108)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57899999999999864
No 6
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=25.69 E-value=26 Score=25.48 Aligned_cols=19 Identities=11% Similarity=0.557 Sum_probs=15.4
Q ss_pred HHHhh---cCcccCC-CCCcccc
Q 033047 64 QLSAM---AKPTYTD-DGELIDG 82 (128)
Q Consensus 64 ~l~~~---~rP~y~~-~G~Lv~~ 82 (128)
=|++. |+|.|++ +|+++++
T Consensus 127 NmsKl~~dGkp~~r~~dgKvlK~ 149 (171)
T 2rfp_A 127 NMAKLGPDGQPIFRESDQKVMKP 149 (171)
T ss_dssp HHTTCCTTSSCCBCTTTCCBCCC
T ss_pred hhhhcCCCCCeeecCCCCceeCC
Confidence 37777 7999999 9998774
No 7
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=25.61 E-value=40 Score=18.52 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=11.1
Q ss_pred hhHhhHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHME 18 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~ 18 (128)
+..+.+|++|.+.+-
T Consensus 22 ~~~r~qAa~Na~lla 36 (38)
T 2rmg_A 22 RAAREQATTNARILA 36 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHh
Confidence 567788888887653
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=23.95 E-value=57 Score=22.63 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=15.1
Q ss_pred hhHhhHHHHHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHMEKLRR 22 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~l~~ 22 (128)
.+.||+.++|+++|+.+..
T Consensus 3 ~~~~~~~e~~~~~l~~l~~ 21 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTG 21 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhc
Confidence 4667888899999988753
No 9
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=23.53 E-value=63 Score=18.05 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.0
Q ss_pred hhHhhHHHHHHHHHHH
Q 033047 4 QGAKKRKEENARHMEK 19 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l~~ 19 (128)
+.+|++|+.|...+..
T Consensus 25 e~~~qqA~~NR~l~d~ 40 (42)
T 1go9_A 25 EQLAQQAHSNRKLMEI 40 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHh
Confidence 4678889989877653
No 10
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=22.12 E-value=25 Score=16.99 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=8.4
Q ss_pred ccCCCCCcccc
Q 033047 72 TYTDDGELIDG 82 (128)
Q Consensus 72 ~y~~~G~Lv~~ 82 (128)
-||.+|+++..
T Consensus 9 IYD~~g~~i~~ 19 (26)
T 2v2f_A 9 IYDNKNQLIAD 19 (26)
T ss_pred EEeCCCCEeee
Confidence 47899988764
No 11
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=22.09 E-value=59 Score=18.00 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=10.3
Q ss_pred hhHhhHHHHHHHHH
Q 033047 4 QGAKKRKEENARHM 17 (128)
Q Consensus 4 ~s~Kk~a~~N~~~l 17 (128)
+.+|++|+.|...+
T Consensus 24 e~~~qqA~~NR~~l 37 (40)
T 2rmf_A 24 QSQRERAEQNRIIF 37 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 46788888887755
No 12
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=22.08 E-value=29 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=18.0
Q ss_pred cCcccCCCCCcccccccCCCCc
Q 033047 69 AKPTYTDDGELIDGGFDMSTGG 90 (128)
Q Consensus 69 ~rP~y~~~G~Lv~~G~DL~~~G 90 (128)
.|--|+.+|+.|++-.||..++
T Consensus 60 Vr~Lyt~~G~~V~~l~dl~dg~ 81 (108)
T 2dnf_A 60 VHRLYTLEGKLVESGAELENGQ 81 (108)
T ss_dssp CCEEEETTCCEESSTTSCCSSC
T ss_pred EEEEEcCCCCEeCCHHHhCCCC
Confidence 3666788999999999997655
Done!