Query 033047
Match_columns 128
No_of_seqs 102 out of 211
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 14:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033047hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b59b1 a.139.1.1 (B:104-163) 73.7 0.64 4.6E-05 26.8 1.4 29 66-102 20-48 (60)
2 d1s6la1 a.4.5.79 (A:21-80) Alk 49.9 3 0.00022 24.0 1.2 25 63-87 35-59 (60)
3 d1pvma3 g.41.13.1 (A:143-178) 30.2 6.7 0.00049 19.7 0.5 10 70-79 13-22 (36)
4 d2jn0a1 b.38.1.6 (A:4-53) Hypo 25.2 4 0.00029 22.6 -1.1 10 67-76 14-23 (50)
5 d2k57a1 b.38.1.6 (A:2-53) Unch 23.2 5.3 0.00039 22.2 -0.8 9 68-76 17-25 (52)
6 d2ra2a1 b.38.1.6 (A:4-56) Unch 22.6 5.8 0.00043 22.1 -0.7 10 67-76 15-24 (53)
7 d1hbnb2 d.58.31.2 (B:2-188) Be 22.4 8.9 0.00065 26.5 0.1 15 73-87 10-24 (187)
8 d2rd1a1 b.38.1.6 (A:22-73) Put 22.4 4.8 0.00035 22.4 -1.1 10 67-76 15-24 (52)
9 d1e6yb2 d.58.31.2 (B:2002-2185 22.3 9 0.00066 26.4 0.1 15 73-87 7-21 (184)
10 d1lb3a_ a.25.1.1 (A:) (Apo)fer 21.5 19 0.0014 23.8 1.7 27 63-97 148-174 (179)
11 d1e6vb2 d.58.31.2 (B:7-189) Be 21.3 9.7 0.00071 26.2 0.1 15 73-87 6-20 (183)
No 1
>d2b59b1 a.139.1.1 (B:104-163) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}
Probab=73.74 E-value=0.64 Score=26.77 Aligned_cols=29 Identities=14% Similarity=0.477 Sum_probs=20.6
Q ss_pred HhhcCcccCCCCCcccccccCCCCchhHHHHHHHHHH
Q 033047 66 SAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYIT 102 (128)
Q Consensus 66 ~~~~rP~y~~~G~Lv~~G~DL~~~Gl~ey~~DvIylt 102 (128)
.+.+.|+|.+ +.|||..|.. .|+|++++.
T Consensus 20 ~~~g~~~y~~-------~lDlN~dGaI-nm~Di~Iv~ 48 (60)
T d2b59b1 20 ATKGSANYVE-------ELDINRNGAI-NMQDIMIVH 48 (60)
T ss_dssp CBTTSTTCCG-------GGSTTCSSBC-SHHHHHHHH
T ss_pred cccCCcchhh-------hccccccccc-cHHHHHHHH
Confidence 4556666654 8999987755 478988763
No 2
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=49.85 E-value=3 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.3
Q ss_pred HHHHhhcCcccCCCCCcccccccCC
Q 033047 63 QQLSAMAKPTYTDDGELIDGGFDMS 87 (128)
Q Consensus 63 ~~l~~~~rP~y~~~G~Lv~~G~DL~ 87 (128)
..++++..-.||++|++|-.|.-|.
T Consensus 35 ~aL~~~p~tEyD~~G~ivG~GLTLR 59 (60)
T d1s6la1 35 AVLEQATSTEYDKDGNIIGYGLTLR 59 (60)
T ss_dssp HHHTTCCSSCEETTTEECCCCSSSS
T ss_pred HHHHhCCCceecCCCCEEeeeeeec
Confidence 4488999999999999999997664
No 3
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=30.19 E-value=6.7 Score=19.67 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.3
Q ss_pred CcccCCCCCc
Q 033047 70 KPTYTDDGEL 79 (128)
Q Consensus 70 rP~y~~~G~L 79 (128)
.|.||++|++
T Consensus 13 ~pvy~~kgei 22 (36)
T d1pvma3 13 EPVYNEKGEI 22 (36)
T ss_dssp EEEECTTSCE
T ss_pred EEeecCCCcE
Confidence 5899999964
No 4
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}
Probab=25.17 E-value=4 Score=22.59 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=7.3
Q ss_pred hhcCcccCCC
Q 033047 67 AMAKPTYTDD 76 (128)
Q Consensus 67 ~~~rP~y~~~ 76 (128)
.-++|++|++
T Consensus 14 T~gKP~~D~d 23 (50)
T d2jn0a1 14 TDGKPEIDDD 23 (50)
T ss_dssp BCCCCEEETT
T ss_pred eCCCccccCC
Confidence 4578999864
No 5
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=23.23 E-value=5.3 Score=22.18 Aligned_cols=9 Identities=22% Similarity=0.826 Sum_probs=6.7
Q ss_pred hcCcccCCC
Q 033047 68 MAKPTYTDD 76 (128)
Q Consensus 68 ~~rP~y~~~ 76 (128)
-++|++|++
T Consensus 17 ~gkP~~d~d 25 (52)
T d2k57a1 17 VDTPKYDEE 25 (52)
T ss_dssp SSCCEECTT
T ss_pred CCCccccCC
Confidence 468999864
No 6
>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}
Probab=22.62 E-value=5.8 Score=22.10 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=7.5
Q ss_pred hhcCcccCCC
Q 033047 67 AMAKPTYTDD 76 (128)
Q Consensus 67 ~~~rP~y~~~ 76 (128)
.-++|++|++
T Consensus 15 T~gKP~~D~d 24 (53)
T d2ra2a1 15 TDGKPQTDND 24 (53)
T ss_dssp CSSCCEECTT
T ss_pred eCCCccccCC
Confidence 4578999864
No 7
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.43 E-value=8.9 Score=26.46 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=13.8
Q ss_pred cCCCCCcccccccCC
Q 033047 73 YTDDGELIDGGFDMS 87 (128)
Q Consensus 73 y~~~G~Lv~~G~DL~ 87 (128)
||++|+|++++.+|+
T Consensus 10 Ydd~Gkll~s~VpLe 24 (187)
T d1hbnb2 10 YDDRGNLVEEQVPLE 24 (187)
T ss_dssp ECTTSCEEEEEEEGG
T ss_pred ecCCCceeccCCChh
Confidence 789999999999986
No 8
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}
Probab=22.41 E-value=4.8 Score=22.39 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=7.2
Q ss_pred hhcCcccCCC
Q 033047 67 AMAKPTYTDD 76 (128)
Q Consensus 67 ~~~rP~y~~~ 76 (128)
.-++|++|++
T Consensus 15 t~gKP~~D~d 24 (52)
T d2rd1a1 15 TQGKPQLDKE 24 (52)
T ss_dssp EESCCEEETT
T ss_pred cCCCccccCC
Confidence 3478999864
No 9
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=22.33 E-value=9 Score=26.38 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=14.0
Q ss_pred cCCCCCcccccccCC
Q 033047 73 YTDDGELIDGGFDMS 87 (128)
Q Consensus 73 y~~~G~Lv~~G~DL~ 87 (128)
||++|+|++++.+|+
T Consensus 7 Ydd~Gkll~s~VpLe 21 (184)
T d1e6yb2 7 YDDRGKLLESNVDIM 21 (184)
T ss_dssp ECTTSCEEEEEEEGG
T ss_pred ecCCCceeccCCChh
Confidence 899999999999986
No 10
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.46 E-value=19 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHhhcCcccCCCCCcccccccCCCCchhHHHHH
Q 033047 63 QQLSAMAKPTYTDDGELIDGGFDMSTGGICGYLHD 97 (128)
Q Consensus 63 ~~l~~~~rP~y~~~G~Lv~~G~DL~~~Gl~ey~~D 97 (128)
..+++++.|.... ....++|+.||+||
T Consensus 148 ~~l~ri~~~~~~~--------~~~~~~~lg~~lfD 174 (179)
T d1lb3a_ 148 TNLRRVAGPQPAQ--------TGAPQGSLGEYLFE 174 (179)
T ss_dssp HHHHHHC--------------------CHHHHHHH
T ss_pred HHHHHhcCcccch--------hccCCccchhhhhh
Confidence 4577777764321 11224789999999
No 11
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=21.28 E-value=9.7 Score=26.18 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=14.0
Q ss_pred cCCCCCcccccccCC
Q 033047 73 YTDDGELIDGGFDMS 87 (128)
Q Consensus 73 y~~~G~Lv~~G~DL~ 87 (128)
||++|+|++++.+|+
T Consensus 6 Ydd~Gkll~s~VpLe 20 (183)
T d1e6vb2 6 YDDRGNCVAEEVPIE 20 (183)
T ss_dssp ECTTSCEEEEEEEGG
T ss_pred ccCCCceeccCCCHh
Confidence 899999999999986
Done!