Query 033051
Match_columns 128
No_of_seqs 130 out of 1139
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0793 Prc Periplasmic protea 100.0 2.5E-29 5.5E-34 208.1 12.5 109 5-115 236-344 (406)
2 smart00245 TSPc tail specific 99.9 4.1E-26 8.8E-31 171.5 13.3 108 6-116 62-170 (192)
3 cd06567 Peptidase_S41 C-termin 99.9 6.1E-26 1.3E-30 172.7 14.0 109 5-114 92-200 (224)
4 cd07560 Peptidase_S41_CPP C-te 99.9 6.1E-26 1.3E-30 173.4 13.5 113 5-121 81-193 (211)
5 PLN00049 carboxyl-terminal pro 99.9 3.4E-26 7.4E-31 188.3 12.9 108 5-114 227-335 (389)
6 TIGR00225 prc C-terminal pepti 99.9 1.1E-25 2.4E-30 181.5 13.1 107 5-114 184-290 (334)
7 PRK11186 carboxy-terminal prot 99.9 4.1E-26 8.9E-31 198.2 10.9 96 5-101 386-481 (667)
8 cd07561 Peptidase_S41_CPP_like 99.9 1.4E-25 3E-30 176.0 12.3 106 5-111 97-215 (256)
9 cd07563 Peptidase_S41_IRBP Int 99.9 1.9E-23 4.2E-28 162.0 11.5 108 5-113 98-212 (250)
10 PF03572 Peptidase_S41: Peptid 99.9 6.1E-22 1.3E-26 143.4 9.1 107 5-113 35-145 (169)
11 cd07562 Peptidase_S41_TRI Tric 99.8 8.8E-21 1.9E-25 148.7 9.5 101 5-114 118-219 (266)
12 cd07021 Clp_protease_NfeD_like 85.4 1.7 3.6E-05 32.4 4.4 25 56-80 57-81 (178)
13 cd07020 Clp_protease_NfeD_1 No 59.8 23 0.00049 26.2 4.8 26 56-81 57-85 (187)
14 TIGR02175 PorC_KorC 2-oxoacid: 59.1 11 0.00024 27.6 3.0 59 66-125 12-78 (177)
15 PRK08537 2-oxoglutarate ferred 48.3 32 0.0007 25.0 3.9 60 66-125 13-79 (177)
16 PRK14512 ATP-dependent Clp pro 47.8 28 0.00062 26.2 3.7 27 55-81 79-105 (197)
17 PRK08534 pyruvate ferredoxin o 47.5 31 0.00066 25.3 3.7 59 66-125 12-78 (181)
18 cd07015 Clp_protease_NfeD Nodu 47.2 33 0.00072 25.5 3.9 26 56-81 57-85 (172)
19 COG1014 PorG Pyruvate:ferredox 42.1 32 0.0007 25.7 3.2 60 65-125 13-80 (203)
20 PRK14028 pyruvate ferredoxin o 38.3 51 0.0011 26.3 3.9 60 66-126 13-80 (312)
21 cd00394 Clp_protease_like Case 37.8 55 0.0012 23.0 3.7 25 56-80 56-80 (161)
22 PRK14029 pyruvate/ketoisovaler 37.6 51 0.0011 24.3 3.6 60 66-126 12-79 (185)
23 PF01972 SDH_sah: Serine dehyd 36.2 78 0.0017 25.7 4.6 26 56-81 117-142 (285)
24 PRK05844 pyruvate flavodoxin o 33.7 67 0.0015 23.6 3.7 59 66-125 12-78 (186)
25 PF15026 FAM74: FAM74 protein 32.7 34 0.00074 23.7 1.8 20 8-27 4-23 (127)
26 PF04028 DUF374: Domain of unk 32.3 1.3E+02 0.0028 19.2 4.4 37 57-95 9-45 (74)
27 PLN02994 1-aminocyclopropane-1 30.4 62 0.0013 23.4 3.0 33 62-94 120-152 (153)
28 smart00368 LRR_RI Leucine rich 30.1 31 0.00066 17.6 1.0 13 4-16 4-16 (28)
29 PRK06274 indolepyruvate oxidor 29.3 93 0.002 22.9 3.9 59 66-125 13-79 (197)
30 PF00560 LRR_1: Leucine Rich R 27.3 35 0.00075 16.3 0.9 8 5-12 3-10 (22)
31 PRK12551 ATP-dependent Clp pro 25.8 84 0.0018 23.8 3.1 26 55-80 81-106 (196)
32 PF11061 DUF2862: Protein of u 25.8 1.8E+02 0.0039 18.3 4.1 39 73-113 18-57 (64)
33 PF13344 Hydrolase_6: Haloacid 24.3 89 0.0019 20.7 2.7 21 56-76 29-49 (101)
34 cd01532 4RHOD_Repeat_1 Member 24.1 1.3E+02 0.0028 19.0 3.5 27 57-83 50-76 (92)
35 PRK00277 clpP ATP-dependent Cl 24.1 1.2E+02 0.0026 22.7 3.7 24 56-79 88-111 (200)
36 PF02873 MurB_C: UDP-N-acetyle 24.0 71 0.0015 21.8 2.2 18 61-78 65-82 (105)
37 PRK09271 flavodoxin; Provision 22.6 67 0.0014 22.9 2.0 16 83-98 52-67 (160)
38 PRK08338 2-oxoglutarate ferred 22.5 1.3E+02 0.0028 21.8 3.5 58 67-125 12-76 (170)
39 COG1030 NfeD Membrane-bound se 22.2 1E+02 0.0023 26.4 3.3 35 6-41 61-95 (436)
40 PLN02607 1-aminocyclopropane-1 20.7 1.1E+02 0.0024 25.7 3.1 34 62-95 123-156 (447)
41 TIGR00493 clpP ATP-dependent C 20.5 1.5E+02 0.0033 22.0 3.6 24 56-79 83-106 (191)
42 PRK07308 flavodoxin; Validated 20.4 83 0.0018 21.8 2.0 15 84-98 50-64 (146)
No 1
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.5e-29 Score=208.13 Aligned_cols=109 Identities=41% Similarity=0.578 Sum_probs=98.8
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+.+|..++++|++++ ++.+.++|+|+..++........+++|++||||+.|||||||||+|||+++|
T Consensus 236 lIlDLR~N~GG~L~~av~i~~~f~~~g-~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~SASAsEI~agalqd~~r 314 (406)
T COG0793 236 LILDLRNNPGGLLSQAVKLAGLFLPSG-PIVSTRGRNGKVNVYFSASGEALYDGPLVVLVNEGSASASEIFAGALQDYGR 314 (406)
T ss_pred EEEEeCCCCCccHHHHHHHHHcccCCC-cEEEEecCCCceeeccccccccCCCCCEEEEECCCCccHHHHHHHHHHHcCC
Confidence 399999999999999999999999985 7899999999887776555555789999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEEEEEccCCCcceeee
Q 033051 85 AILVGHKTFGKGKIQVYNVSYCQASSAQMLN 115 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~~ 115 (128)
|+|||++|||||++|+. .+|+||+..+++.
T Consensus 315 a~lVG~~TfGkg~vQ~~-~~L~dg~~lklT~ 344 (406)
T COG0793 315 ATLVGETTFGKGTVQTL-RPLSDGSALKLTI 344 (406)
T ss_pred cEEEecccccceEEEee-EEcCCCCeEEEEE
Confidence 99999999999999984 7899998877653
No 2
>smart00245 TSPc tail specific protease. tail specific protease
Probab=99.94 E-value=4.1e-26 Score=171.48 Aligned_cols=108 Identities=42% Similarity=0.576 Sum_probs=88.2
Q ss_pred eeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCC-CceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 6 PPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDRE-GHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 6 iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~-g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
|||||+|+||.+..+..++++|++++. +.....++ ++...+.. .....+++|++||+|++|+||||+||++||++++
T Consensus 62 IiDLR~N~GG~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~pv~vL~~~~TaSaaE~~a~~lk~~~~ 139 (192)
T smart00245 62 ILDLRNNPGGLLSAAIDVSSLFLDKGV-IVYTIYRRTGELETYPA-NLGRKYSKPLVVLVNEGTASASEIFAGALKDLGR 139 (192)
T ss_pred EEEecCCCCCCHHHHHHHHHHhcCCCc-EEEEEecCCCceEEEec-CCCcccCCCEEEEECCCCeeHHHHHHHHHhhCCC
Confidence 999999999999999999999999874 44555554 54433332 2334568999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEEEEEccCCCcceeeee
Q 033051 85 AILVGHKTFGKGKIQVYNVSYCQASSAQMLNL 116 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~~~ 116 (128)
+++||++|+|++..|. .++++||+..++...
T Consensus 140 a~viG~~T~G~~~~~~-~~~l~~g~~l~it~~ 170 (192)
T smart00245 140 ALIVGERTFGKGLVQQ-TVPLGDGSGLKLTVA 170 (192)
T ss_pred EEEEecCCcCCcceee-EEEeCCCCEEEEEEE
Confidence 9999999999987765 568999987665544
No 3
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=99.94 E-value=6.1e-26 Score=172.67 Aligned_cols=109 Identities=41% Similarity=0.588 Sum_probs=88.4
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+..+..++++|++++..+.....+++....+........+.+|++||||+.|+||||+||++||++++
T Consensus 92 lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~lk~~~~ 171 (224)
T cd06567 92 LILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGALQDLGR 171 (224)
T ss_pred EEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 49999999999999999999999998765544443333223333344556789999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEEEEEccCCCcceee
Q 033051 85 AILVGHKTFGKGKIQVYNVSYCQASSAQML 114 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~ 114 (128)
+++||++|+|++..|. ..++++|....+.
T Consensus 172 ~~vvG~~T~G~~~~~~-~~~l~~g~~~~~~ 200 (224)
T cd06567 172 ATLVGERTFGKGSVQT-VFPLLDGSALKLT 200 (224)
T ss_pred eEEEeeCCCCCCcceE-EEEcCCCCEEEEE
Confidence 9999999999988654 4677788766665
No 4
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=99.94 E-value=6.1e-26 Score=173.39 Aligned_cols=113 Identities=40% Similarity=0.610 Sum_probs=93.3
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+..+..++++|++++ .+++++.|+|+...+.. +....+.+|++||||+.|+||||+||++||++++
T Consensus 81 lIlDLR~N~GG~~~~~~~i~~~f~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk~~~~ 158 (211)
T cd07560 81 LILDLRNNPGGLLDEAVEIADLFLPGG-PIVSTKGRNGKREAYAS-DDGGLYDGPLVVLVNGGSASASEIVAGALQDNGR 158 (211)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHhcCCC-eEEEEEecCCceEEEec-CCCccCCCCEEEEeCCCcccHHHHHHHHHhhcCC
Confidence 399999999999999999999999964 67778888876654432 3334689999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEEEEEccCCCcceeeeeeEEee
Q 033051 85 AILVGHKTFGKGKIQVYNVSYCQASSAQMLNLIHCVD 121 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~~~~~~~~ 121 (128)
+++||++|+|++..+. .++++||...++. ..++++
T Consensus 159 ~~vIG~~T~G~~~~~~-~~~L~~g~~l~i~-~~~~~~ 193 (211)
T cd07560 159 AVLVGERTFGKGSVQT-VFPLSDGSALKLT-TAKYYT 193 (211)
T ss_pred EEEEecCCCCCCeeeE-EEEcCCCCEEEEE-EEEEEC
Confidence 9999999999987654 5789998766554 334443
No 5
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=99.94 E-value=3.4e-26 Score=188.26 Aligned_cols=108 Identities=42% Similarity=0.591 Sum_probs=90.0
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCC-CccCCCcEEEEEcCCCCChHHHHHHHhhcCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDG-HAITHDPLVVLVNEGSASASEILAGALHDNG 83 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~-~~~~~~pivVLvn~~TaSaaE~~a~alk~~~ 83 (128)
.|||||+|+||.+.+|..++++|++++. +.+..++++....+..... ...+.+|++||+|+.||||||+||++||+++
T Consensus 227 lIlDLR~N~GG~~~~a~~ia~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~alk~~~ 305 (389)
T PLN00049 227 FVLDLRDNSGGLFPAGIEIAKLWLDKGV-IVYIADSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGALKDNK 305 (389)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHhcCCCc-EEEEecCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHHhhCC
Confidence 3999999999999999999999999875 5565566665444443322 2357899999999999999999999999999
Q ss_pred CeEEEcccCCCCceEEEEEEEccCCCcceee
Q 033051 84 RAILVGHKTFGKGKIQVYNVSYCQASSAQML 114 (128)
Q Consensus 84 ~a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~ 114 (128)
++++||++|+|||++|.. ++|+||+..++.
T Consensus 306 ~~~vvG~~T~Gkg~~q~~-~~L~dG~~l~lt 335 (389)
T PLN00049 306 RAVVLGEPTFGKGLIQSV-FELSDGSGLAVT 335 (389)
T ss_pred CeEEEecCCcCCccccee-EEeCCCCEEEEE
Confidence 999999999999998874 699999876544
No 6
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=99.93 E-value=1.1e-25 Score=181.48 Aligned_cols=107 Identities=41% Similarity=0.610 Sum_probs=91.9
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+.++..++++|++++ .+++.++++++...+. .+....+++|++||||+.||||||+||++||++++
T Consensus 184 lIiDLR~N~GG~~~~a~~~a~~f~~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~pv~vLvn~~TaSaaE~~a~~l~~~~~ 261 (334)
T TIGR00225 184 YILDLRGNPGGLLQSAVDISRLFITKG-PIVQTKDRNGSKRHYK-ANGRQPYNLPLVVLVNRGSASASEIFAGALQDNGR 261 (334)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHhcCCC-cEEEEEcCCCcceEEe-cCCCccCCCCEEEEECCCCCcHHHHHHHHHHhCCC
Confidence 399999999999999999999999987 5778888888765333 23445789999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEEEEEccCCCcceee
Q 033051 85 AILVGHKTFGKGKIQVYNVSYCQASSAQML 114 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~ 114 (128)
+++||++|+|++..|. .++|+||+..++.
T Consensus 262 a~viG~~T~G~~~~~~-~~~l~~g~~l~~~ 290 (334)
T TIGR00225 262 ATIVGEKTFGKGTVQQ-VRPLNDGSGIKVT 290 (334)
T ss_pred eEEEeeCCccCceeee-EEEcCCCCEEEEE
Confidence 9999999999988765 4789999765544
No 7
>PRK11186 carboxy-terminal protease; Provisional
Probab=99.93 E-value=4.1e-26 Score=198.16 Aligned_cols=96 Identities=36% Similarity=0.509 Sum_probs=85.5
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+.+|..++++|++++ ++.+.++++|+...+...++...|++|++||||++||||||+||++||+++|
T Consensus 386 LIlDLR~NgGG~l~~a~~la~lFi~~g-~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~alqd~~r 464 (667)
T PRK11186 386 IIIDLRGNGGGALTEAVSLSGLFIPSG-PVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGR 464 (667)
T ss_pred EEEEcCCCCCCcHHHHHHHHHHHhcCC-ceEEEecCCCceeccccCCcccccCCCEEEEeCCCCccHHHHHHHHHHhcCC
Confidence 499999999999999999999999986 5678888888765544344556789999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEEE
Q 033051 85 AILVGHKTFGKGKIQVY 101 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~~ 101 (128)
++|||++|+|||++|+.
T Consensus 465 a~vVG~~T~GKGtvQ~~ 481 (667)
T PRK11186 465 ALIVGEPTFGKGTVQQH 481 (667)
T ss_pred EEEEeccCCCccccccc
Confidence 99999999999999875
No 8
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=99.93 E-value=1.4e-25 Score=175.95 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=83.3
Q ss_pred ceeeecCCCCCCHHHHHHHHhcccc---CCceeEEEEcCCCc-----eeEEeccC---CCccCCCcEEEEEcCCCCChHH
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLD---GDETLVNAVDREGH-----TLPINMVD---GHAITHDPLVVLVNEGSASASE 73 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~---~~~~~~~~~~r~g~-----~~~~~~~~---~~~~~~~pivVLvn~~TaSaaE 73 (128)
.|||||+|+||.+.+|..++++|++ .++++...+.+++. ...+.... ......+|++||||+.||||||
T Consensus 97 LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE 176 (256)
T cd07561 97 LVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANNEDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASE 176 (256)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCCceeecccccccccCcCCcccEEEEECCCcccHHH
Confidence 3999999999999999999999998 35667777666652 12222211 2334568999999999999999
Q ss_pred HHHHHhhcCCCeEEEcccCCCCceEEEEEEEcc--CCCcc
Q 033051 74 ILAGALHDNGRAILVGHKTFGKGKIQVYNVSYC--QASSA 111 (128)
Q Consensus 74 ~~a~alk~~~~a~vIG~~T~G~g~~q~~~~~l~--dG~~~ 111 (128)
+||++||+++++++||++|+||+++|.. ++++ +|...
T Consensus 177 ~~a~~Lk~~~~a~vIGe~T~Gk~~~~~~-~~l~~~~g~~l 215 (256)
T cd07561 177 LVINSLKPYMDVVLIGETTYGKNVGSLT-FEDDRKHKWAL 215 (256)
T ss_pred HHHHHhhccCCEEEEeCCCCCCCccceE-EEccCCCCeEE
Confidence 9999999999999999999999887753 5665 55433
No 9
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=99.90 E-value=1.9e-23 Score=162.02 Aligned_cols=108 Identities=23% Similarity=0.162 Sum_probs=83.3
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeE--EEEcCCCceeE-----EeccCCCccCCCcEEEEEcCCCCChHHHHHH
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLV--NAVDREGHTLP-----INMVDGHAITHDPLVVLVNEGSASASEILAG 77 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~--~~~~r~g~~~~-----~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~ 77 (128)
.|||||+|+||+...+..++++|+++++.+. ....+++.... +..+.....+++|++||+|+.|+||||+|++
T Consensus 98 LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~a~ 177 (250)
T cd07563 98 LIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAY 177 (250)
T ss_pred EEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHHHH
Confidence 3999999999999999999999996443332 33344433221 2223344578999999999999999999999
Q ss_pred HhhcCCCeEEEcccCCCCceEEEEEEEccCCCccee
Q 033051 78 ALHDNGRAILVGHKTFGKGKIQVYNVSYCQASSAQM 113 (128)
Q Consensus 78 alk~~~~a~vIG~~T~G~g~~q~~~~~l~dG~~~~~ 113 (128)
+||+++++++||++|+|++..+ ..++|++|....+
T Consensus 178 ~lk~~~~~~viGe~T~G~~~~~-~~~~Lp~g~~~~~ 212 (250)
T cd07563 178 ALKQLKRATVVGETTAGGASPV-LPFPLPNGLYLTV 212 (250)
T ss_pred HHHhCCCcEEEeecCCCCCCCc-eEEEcCCCeEEEE
Confidence 9999999999999999997743 4578999654433
No 10
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=99.87 E-value=6.1e-22 Score=143.36 Aligned_cols=107 Identities=29% Similarity=0.299 Sum_probs=73.0
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCcee----EEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhh
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTL----PINMVDGHAITHDPLVVLVNEGSASASEILAGALH 80 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~----~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk 80 (128)
.|||||+|+||+...+..++++|.+++. ......+.+... ..........+++|++||+|+.|+|+||.|+++||
T Consensus 35 lIIDlR~N~GG~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vL~~~~t~Saae~fa~~lk 113 (169)
T PF03572_consen 35 LIIDLRGNGGGSDEYAIELLSYLIPKPI-IFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYVLTDENTASAAEIFASALK 113 (169)
T ss_dssp EEEE-TTB--BSHHHHHHHHHCHSSSSE-EEEEEEEEEEETTCCHEEEECSSTT-SSSEEEEEE-TTBBTHHHHHHHHHH
T ss_pred EEEEcccCCCcchHHHHHHHhcccCCCc-EEEEecccccccccccCCCCccccccCCCCEEEEeCCCCCChhHHHHHHHH
Confidence 4999999999999999999999999753 333222221111 01111114578999999999999999999999999
Q ss_pred cCCCeEEEcccCCCCceEEEEEEEccCCCccee
Q 033051 81 DNGRAILVGHKTFGKGKIQVYNVSYCQASSAQM 113 (128)
Q Consensus 81 ~~~~a~vIG~~T~G~g~~q~~~~~l~dG~~~~~ 113 (128)
+++++++|||+|+|++..+. ...+++|...++
T Consensus 114 ~~~~~~ivGe~T~G~~~~~~-~~~l~~g~~~~i 145 (169)
T PF03572_consen 114 DNKRATIVGEPTAGAGGGQT-GFSLPSGSILSI 145 (169)
T ss_dssp HTTSEEEEES--SB-EEEEE-EEE-TTSEEEEE
T ss_pred hcCCCeEEeecCCCCCEEee-EEEECCCcEEEe
Confidence 99999999999999876544 467777766653
No 11
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=99.84 E-value=8.8e-21 Score=148.69 Aligned_cols=101 Identities=26% Similarity=0.222 Sum_probs=78.8
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCC-CceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDRE-GHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNG 83 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~-g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~ 83 (128)
.|||||+|+||++. ..++++|.+. .+.+...|+ +..... +. ..+++|++||+|+.|+||||+|+.+||+++
T Consensus 118 lIiDlR~N~GG~~~--~~l~~~~~~~--~~~~~~~r~~~~~~~~---p~-~~~~~pv~vL~~~~t~SaaE~~a~~lk~~~ 189 (266)
T cd07562 118 LIIDVRFNGGGNVA--DLLLDFLSRR--RYGYDIPRGGGKPVTY---PS-GRWRGPVVVLVNEGSASDAEIFAYGFRALG 189 (266)
T ss_pred EEEEecCCCCCcHH--HHHHHHhCCC--ceEEEccCCCCCCCCC---cc-cccCCCEEEEECCCCCchHHHHHHHHHHcC
Confidence 39999999999955 4678888764 456666666 332111 11 237899999999999999999999999999
Q ss_pred CeEEEcccCCCCceEEEEEEEccCCCcceee
Q 033051 84 RAILVGHKTFGKGKIQVYNVSYCQASSAQML 114 (128)
Q Consensus 84 ~a~vIG~~T~G~g~~q~~~~~l~dG~~~~~~ 114 (128)
++++||++|+|++.. ...++|++|...++.
T Consensus 190 ~~~vvG~~T~G~~~~-~~~~~L~~g~~~~~~ 219 (266)
T cd07562 190 LGPVVGTRTAGGVII-SGRYRLPDGGSLTVP 219 (266)
T ss_pred CeeEEeeccCCceee-cCceecCCCCEEEee
Confidence 999999999999774 345788898766544
No 12
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=85.39 E-value=1.7 Score=32.45 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhh
Q 033051 56 THDPLVVLVNEGSASASEILAGALH 80 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a~alk 80 (128)
..+|++..+++..+|++-+++.+-.
T Consensus 57 ~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 57 SPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred CCCCEEEEECCchHHHHHHHHHhCC
Confidence 3489999999999999999888654
No 13
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=59.81 E-value=23 Score=26.17 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCCcEEEEEc---CCCCChHHHHHHHhhc
Q 033051 56 THDPLVVLVN---EGSASASEILAGALHD 81 (128)
Q Consensus 56 ~~~pivVLvn---~~TaSaaE~~a~alk~ 81 (128)
.++|++..++ +..+|++=.++.+=..
T Consensus 57 ~~kPvia~v~~~~G~AasgG~~iala~D~ 85 (187)
T cd07020 57 SPVPVVVYVYPSGARAASAGTYILLAAHI 85 (187)
T ss_pred CCCCEEEEEecCCCCchhHHHHHHHhCCc
Confidence 4689999998 8888888887776443
No 14
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=59.14 E-value=11 Score=27.58 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccC-----CCcceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQ-----ASSAQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~d-----G~~~~~~~~~~~~~~~~~ 125 (128)
++..+++++++.++. +..-.+.+.++||. |......+.+.+ .+...-.+++.|+|+.++
T Consensus 12 qGv~~ag~ila~a~~-~~G~~v~~~~~ygs~~rGg~~~~~vris~~~i~~~s~~~~~D~lva~~~~~~ 78 (177)
T TIGR02175 12 QGAVTASQLLAEAAF-LEGKYAQAFPEFGAERRGAPVRAFLRISDRPIRVHSQIYEPDYVVVLDPTLL 78 (177)
T ss_pred chHHHHHHHHHHHHH-hcCceEEEeeccCchhcCCcEEEEEEEcCccccCCCccCCCCEEEEcCHHHh
Confidence 456789999999995 55666777888875 222233344555 344567788999998655
No 15
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=48.26 E-value=32 Score=24.99 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCCC----cceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQAS----SAQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG~----~~~~~~~~~~~~~~~~ 125 (128)
++.-+++++++.++.-.....+...++||. |......+.++|.. ...-.+++.|+|+.++
T Consensus 13 qGv~ta~~ila~a~~~~~G~~v~~~~~ygs~~RGG~~~~~vris~~~i~s~~~~~~D~lval~~~~~ 79 (177)
T PRK08537 13 QGIILAGVILGRAAALYDGKYAVQTQSYGPEARGGASKSEVVISDEEIDYPKVISPDILVAMSQEAY 79 (177)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccccCccccCCcEEEEEEECCCcccCccCCCCCEEEEeCHHHH
Confidence 345678999999875333344556666664 22222234455531 2134577888887654
No 16
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=47.77 E-value=28 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=22.9
Q ss_pred cCCCcEEEEEcCCCCChHHHHHHHhhc
Q 033051 55 ITHDPLVVLVNEGSASASEILAGALHD 81 (128)
Q Consensus 55 ~~~~pivVLvn~~TaSaaE~~a~alk~ 81 (128)
..+.|+++++++..+|+|-+++.+=..
T Consensus 79 ~~~~~V~t~v~G~AaSaaslIl~ag~~ 105 (197)
T PRK14512 79 FVKPKVFTIGVGLVASAAALIFLAAKK 105 (197)
T ss_pred hCCCCEEEEEEeeeHhHHHHHHhcCCc
Confidence 356799999999999999998887754
No 17
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=47.47 E-value=31 Score=25.33 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCC-----CcceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQA-----SSAQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG-----~~~~~~~~~~~~~~~~~ 125 (128)
++.-+++++++.++... .--+.+.++||. |......+.+++. +...-.+++.|+|+.++
T Consensus 12 qGv~tag~ila~a~~~~-G~~V~~~~~ygs~~RGG~~~~~vris~~~i~~~~~~~~~D~lva~~~~~~ 78 (181)
T PRK08534 12 QGAVTAAEILAKAAFED-GKFSQAFPFFGVERRGAPVMAFTRIDDKPIRLRSQIYEPDYVIVQDPTLL 78 (181)
T ss_pred chHHHHHHHHHHHHHhc-CCeEEEEeccChhhcCCcEEEEEEEcCCcccCcccCCCCCEEEEcCHHHh
Confidence 45568899999999764 556677777775 2222334556663 45566789999998665
No 18
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=47.24 E-value=33 Score=25.46 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCcEEEEEc---CCCCChHHHHHHHhhc
Q 033051 56 THDPLVVLVN---EGSASASEILAGALHD 81 (128)
Q Consensus 56 ~~~pivVLvn---~~TaSaaE~~a~alk~ 81 (128)
.+.|+++.++ +..+|++-+++.+=..
T Consensus 57 ~~~pvv~~v~p~g~~AaSag~~I~~a~~~ 85 (172)
T cd07015 57 SKIPVIIYVYPPGASAASAGTYIALGSHL 85 (172)
T ss_pred cCcCEEEEEecCCCeehhHHHHHHHhcCc
Confidence 4689999999 8899999998887554
No 19
>COG1014 PorG Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Energy production and conversion]
Probab=42.07 E-value=32 Score=25.72 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=39.1
Q ss_pred cCCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccC-----CCcceeeeeeEEeecCcc
Q 033051 65 NEGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQ-----ASSAQMLNLIHCVDLSSL 125 (128)
Q Consensus 65 n~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~d-----G~~~~~~~~~~~~~~~~~ 125 (128)
.++.-+++++++.++-. ..--+.+.++||. |......+.+.| -+.....+++.|+|++.+
T Consensus 13 GqGvvta~~il~~a~~~-~G~~v~~~~~ygs~~rGg~~~~~vRi~d~~~~~~~~~~~~D~vi~ld~~~~ 80 (203)
T COG1014 13 GQGVVTAGKILAKAAAR-EGYYVQAYPEYGSEIRGGHVVSHVRISDEPIRPRSLIGQADVVIALDPSEL 80 (203)
T ss_pred CccHHHHHHHHHHHHHH-cCCceEEEEeccccccCCceEEEEEecCccccccceecCCCEEEEeCHHHH
Confidence 45677899999999998 4455667777775 222222344555 233344588999998754
No 20
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=38.28 E-value=51 Score=26.31 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCC-----CcceeeeeeEEeecCccc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQA-----SSAQMLNLIHCVDLSSLN 126 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG-----~~~~~~~~~~~~~~~~~~ 126 (128)
++.-+++++++.++...+ --+...++||. |......+.++|. +...-.+++.|+|+.+++
T Consensus 13 qG~~ta~~ila~a~~~~G-~~v~~~~~ygs~~RGg~~~~~vRis~~pi~~~~~~~~~D~lv~~~~~~~~ 80 (312)
T PRK14028 13 QGIVTATYIIANAAVIDG-FYAIANPEFGAERRGAPVKAFLTISKNPIEDQEPVKTPDVAVIFDDKLID 80 (312)
T ss_pred CcHHHHHHHHHHHHHhcC-ceEEeccccCchhcCCceEEEEEecCcccccccccCCCCEEEEeChhhhc
Confidence 456688999999985543 45667777775 2222233444443 345568899999988764
No 21
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=37.85 E-value=55 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhh
Q 033051 56 THDPLVVLVNEGSASASEILAGALH 80 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a~alk 80 (128)
+++|++..+++..+|++=.++.+-.
T Consensus 56 ~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 56 SRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred hCCCEEEEECChhHHHHHHHHhCCC
Confidence 3589999999888888866665443
No 22
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=37.56 E-value=51 Score=24.32 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCC-----CcceeeeeeEEeecCccc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQA-----SSAQMLNLIHCVDLSSLN 126 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG-----~~~~~~~~~~~~~~~~~~ 126 (128)
++.-+++++++.++...+ --+.+.++||. |......+.+++. +.....+++.|+|+.++.
T Consensus 12 qGv~tag~iLa~a~~~~G-~~v~~~~~ygs~~RGG~~~~~vRis~~~i~~~~~~~~~Dilva~~~~~~~ 79 (185)
T PRK14029 12 QGAVTAANILAEAAFLEG-KYVQAFPFFGVERRGAPVTAFTRIDEKPIRIKTQIYEPDVVVVLDPSLLD 79 (185)
T ss_pred chHHHHHHHHHHHHHhcC-CeEEEeeccChhhcCCcEEEEEEEcCCcccCccccCCCCEEEEcCHHHhh
Confidence 445678999999997744 44577788775 2222223334442 345567889999987663
No 23
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=36.17 E-value=78 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=19.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhhc
Q 033051 56 THDPLVVLVNEGSASASEILAGALHD 81 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a~alk~ 81 (128)
+..|+.|+|+....||+-++|.+-.+
T Consensus 117 ~~~~v~v~VP~~A~SAGTlIALaADe 142 (285)
T PF01972_consen 117 HPAKVTVIVPHYAMSAGTLIALAADE 142 (285)
T ss_pred CCCCEEEEECcccccHHHHHHHhCCe
Confidence 35677888888888888888776544
No 24
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=33.70 E-value=67 Score=23.62 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCCC-----cceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQAS-----SAQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG~-----~~~~~~~~~~~~~~~~ 125 (128)
++.-+++++++.++... .--+...++||. |......+.++|.. ..+-.+++.|+|.+++
T Consensus 12 QGi~ta~~ila~a~~~~-G~~v~~~~~ygs~~RGg~~~~~vris~~pI~~~~~v~~~Dilv~ld~~~~ 78 (186)
T PRK05844 12 QGAVTGAKGLADVIAKT-GKEVQAFAFYGSAKRGAAMTAYNRIDDEPILNHEKFMQPDYVLVIDPGLV 78 (186)
T ss_pred CcHHHHHHHHHHHHHhC-CceEEEeeccChhhcCCcEEEEEEECCCcccCCCCcCCCCEEEEecHHHh
Confidence 45678999999998854 456677778875 22223334455532 2336889999998775
No 25
>PF15026 FAM74: FAM74 protein
Probab=32.67 E-value=34 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=16.7
Q ss_pred eecCCCCCCHHHHHHHHhcc
Q 033051 8 SLSIFQGGLVKAGLDVAQIW 27 (128)
Q Consensus 8 DLR~N~GG~~~~a~~l~~~f 27 (128)
.||+.|||+++.|..+...=
T Consensus 4 elr~cpg~dvetaq~ls~rr 23 (127)
T PF15026_consen 4 ELRGCPGEDVETAQRLSQRR 23 (127)
T ss_pred hhcCCCcccHHHHHHHHHHh
Confidence 48999999999998776654
No 26
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=32.29 E-value=1.3e+02 Score=19.20 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhhcCCCeEEEcccCCCC
Q 033051 57 HDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGK 95 (128)
Q Consensus 57 ~~pivVLvn~~TaSaaE~~a~alk~~~~a~vIG~~T~G~ 95 (128)
..++++|+++. -.+|+++..++..+--+|=|..+-|.
T Consensus 9 ~~~~~~lvS~s--~DGe~ia~~~~~~G~~~iRGSs~rgg 45 (74)
T PF04028_consen 9 RRKIAALVSRS--RDGELIARVLERFGFRTIRGSSSRGG 45 (74)
T ss_pred CCCEEEEEccC--cCHHHHHHHHHHcCCCeEEeCCCCcH
Confidence 47899999864 47999999999999999999988885
No 27
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=30.41 E-value=62 Score=23.40 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=27.4
Q ss_pred EEEcCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q 033051 62 VLVNEGSASASEILAGALHDNGRAILVGHKTFG 94 (128)
Q Consensus 62 VLvn~~TaSaaE~~a~alk~~~~a~vIG~~T~G 94 (128)
|++-.++.++-|+++.+|-+-+.+++|-+|+|.
T Consensus 120 Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 120 IVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred eEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 444456677789999999999999999999986
No 28
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.11 E-value=31 Score=17.59 Aligned_cols=13 Identities=23% Similarity=-0.010 Sum_probs=10.4
Q ss_pred cceeeecCCCCCC
Q 033051 4 FSPPSLSIFQGGL 16 (128)
Q Consensus 4 ~~iiDLR~N~GG~ 16 (128)
+..+||++|.=|.
T Consensus 4 L~~LdL~~N~i~~ 16 (28)
T smart00368 4 LRELDLSNNKLGD 16 (28)
T ss_pred cCEEECCCCCCCH
Confidence 4689999998764
No 29
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=29.30 E-value=93 Score=22.85 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCC---Cc--ceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQA---SS--AQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG---~~--~~~~~~~~~~~~~~~ 125 (128)
++..+++++|+.++...+. -+.+.+++|. |......+.+.+. +. ..-.+++.|+|+.++
T Consensus 13 qGv~ta~~il~~a~~~~G~-~v~~~~~~g~~~RGG~~~s~vRi~~~~~~~~~~~~~~D~lva~d~~~~ 79 (197)
T PRK06274 13 QGVLLASRILANAAMNEGF-HVRTAETLGMSQREGSVISHLRFGDEISSPLIPEGQADLLLALEPAEV 79 (197)
T ss_pred chHHHHHHHHHHHHHHcCC-CeEeccccCchhhCCeEEEEEEEcCccCCCccCCCCCCEEEEcCHHHH
Confidence 4556899999999987664 5577788875 2222333445552 22 235678899987653
No 30
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=27.35 E-value=35 Score=16.25 Aligned_cols=8 Identities=25% Similarity=-0.251 Sum_probs=5.7
Q ss_pred ceeeecCC
Q 033051 5 SPPSLSIF 12 (128)
Q Consensus 5 ~iiDLR~N 12 (128)
..+||++|
T Consensus 3 ~~Ldls~n 10 (22)
T PF00560_consen 3 EYLDLSGN 10 (22)
T ss_dssp SEEEETSS
T ss_pred cEEECCCC
Confidence 46778777
No 31
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=25.84 E-value=84 Score=23.78 Aligned_cols=26 Identities=15% Similarity=-0.054 Sum_probs=22.2
Q ss_pred cCCCcEEEEEcCCCCChHHHHHHHhh
Q 033051 55 ITHDPLVVLVNEGSASASEILAGALH 80 (128)
Q Consensus 55 ~~~~pivVLvn~~TaSaaE~~a~alk 80 (128)
..+.|+..++.+..+|+|-+++++=.
T Consensus 81 ~~~~~V~t~~~G~AaS~AslIl~aG~ 106 (196)
T PRK12551 81 HVKPDVHTVCVGLAASMGAFLLCAGA 106 (196)
T ss_pred hcCCCEEEEEEEEehhHHHHHHhCCC
Confidence 45679999999999999999888753
No 32
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=25.83 E-value=1.8e+02 Score=18.33 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCeEEEccc-CCCCceEEEEEEEccCCCccee
Q 033051 73 EILAGALHDNGRAILVGHK-TFGKGKIQVYNVSYCQASSAQM 113 (128)
Q Consensus 73 E~~a~alk~~~~a~vIG~~-T~G~g~~q~~~~~l~dG~~~~~ 113 (128)
+-++..|...+.+++.|-+ |=|+|.. ..+.++||+..|.
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG~giG--~vv~~~ng~~~WF 57 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDGSGIG--VVVEFSNGSRTWF 57 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecCCcEE--EEEEecCCceeEE
Confidence 4567788888999999986 6677654 3456889987764
No 33
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.34 E-value=89 Score=20.65 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=14.4
Q ss_pred CCCcEEEEEcCCCCChHHHHH
Q 033051 56 THDPLVVLVNEGSASASEILA 76 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a 76 (128)
..+|+++|+|..+-|..|+..
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~ 49 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAK 49 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHH
T ss_pred cCCCEEEEeCCCCCCHHHHHH
Confidence 368999999998888666543
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=24.14 E-value=1.3e+02 Score=18.99 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhhcCC
Q 033051 57 HDPLVVLVNEGSASASEILAGALHDNG 83 (128)
Q Consensus 57 ~~pivVLvn~~TaSaaE~~a~alk~~~ 83 (128)
+.|+++.......|.|...+..|+..+
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 678999988766666777777887764
No 35
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=24.08 E-value=1.2e+02 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHh
Q 033051 56 THDPLVVLVNEGSASASEILAGAL 79 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a~al 79 (128)
...|++..+++..+|++-+++.+-
T Consensus 88 ~~~~v~t~~~G~aaS~a~~I~~ag 111 (200)
T PRK00277 88 IKPDVSTICIGQAASMGAFLLAAG 111 (200)
T ss_pred cCCCEEEEEEeEeccHHHHHHhcC
Confidence 457899999999999999888873
No 36
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=24.05 E-value=71 Score=21.79 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=12.1
Q ss_pred EEEEcCCCCChHHHHHHH
Q 033051 61 VVLVNEGSASASEILAGA 78 (128)
Q Consensus 61 vVLvn~~TaSaaE~~a~a 78 (128)
-+|+|.+.|+++|+++..
T Consensus 65 nfivN~g~Ata~dv~~Li 82 (105)
T PF02873_consen 65 NFIVNHGGATAADVLALI 82 (105)
T ss_dssp TEEEE-SS--HHHHHHHH
T ss_pred CeEEECCCCCHHHHHHHH
Confidence 578999999999987653
No 37
>PRK09271 flavodoxin; Provisional
Probab=22.63 E-value=67 Score=22.92 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=12.9
Q ss_pred CCeEEEcccCCCCceE
Q 033051 83 GRAILVGHKTFGKGKI 98 (128)
Q Consensus 83 ~~a~vIG~~T~G~g~~ 98 (128)
-.+.+||.+|+|.|..
T Consensus 52 ~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 52 YDLYLLGTWTDNAGRT 67 (160)
T ss_pred CCEEEEECcccCCCcC
Confidence 4789999999987654
No 38
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=22.55 E-value=1.3e+02 Score=21.81 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=35.7
Q ss_pred CCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccCC---Cc-ceeeeeeEEeecCcc
Q 033051 67 GSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQA---SS-AQMLNLIHCVDLSSL 125 (128)
Q Consensus 67 ~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~dG---~~-~~~~~~~~~~~~~~~ 125 (128)
+.-+++++++.++...+ -.+.+.++||. |......+.++|. +. ....+++.++|+.++
T Consensus 12 Gv~tag~ila~aa~~~G-~~v~~~~~ygs~~RGG~~~~~vris~~~i~s~~~~~~D~lval~~~~~ 76 (170)
T PRK08338 12 GVVLAGVILGEAAAIEG-LNVLQTQDYSSASRGGHSIADVIISKEPIYDVMVTKADVLVALHQLGY 76 (170)
T ss_pred HHHHHHHHHHHHHHHcC-CCEEEccccChhhcCCeEEEEEEEcCccccCCCCCCCCEEEEcCHHHH
Confidence 34578999999997755 45667777775 2222223344443 11 445778888887654
No 39
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=1e+02 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.2
Q ss_pred eeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCC
Q 033051 6 PPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDRE 41 (128)
Q Consensus 6 iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~ 41 (128)
||+| +-|||.++++.++.+.|...+.++..+..++
T Consensus 61 vl~l-dTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ 95 (436)
T COG1030 61 VLEL-DTPGGLLDSMRQIVRAILNSPVPVIGYVVPD 95 (436)
T ss_pred EEEe-cCCCchHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 4554 6799999999999999998776654444444
No 40
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=20.74 E-value=1.1e+02 Score=25.73 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=27.7
Q ss_pred EEEcCCCCChHHHHHHHhhcCCCeEEEcccCCCC
Q 033051 62 VLVNEGSASASEILAGALHDNGRAILVGHKTFGK 95 (128)
Q Consensus 62 VLvn~~TaSaaE~~a~alk~~~~a~vIG~~T~G~ 95 (128)
|++-.++.++-|.++.++-+-+..++|.+|+|+.
T Consensus 123 Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~ 156 (447)
T PLN02607 123 IVLTAGATAANELLTFILADPGDALLVPTPYYPG 156 (447)
T ss_pred eEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcc
Confidence 3344566677899999998889999999999985
No 41
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=20.52 E-value=1.5e+02 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=19.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHh
Q 033051 56 THDPLVVLVNEGSASASEILAGAL 79 (128)
Q Consensus 56 ~~~pivVLvn~~TaSaaE~~a~al 79 (128)
.+.|+..++.+..+|+|-+++.+=
T Consensus 83 ~~~~v~t~~~G~AaSaaslI~~aG 106 (191)
T TIGR00493 83 IKPDVSTICIGQAASMGAFLLSAG 106 (191)
T ss_pred cCCCEEEEEEEeeccHHHHHHhcC
Confidence 456888889999999999887754
No 42
>PRK07308 flavodoxin; Validated
Probab=20.39 E-value=83 Score=21.85 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=12.3
Q ss_pred CeEEEcccCCCCceE
Q 033051 84 RAILVGHKTFGKGKI 98 (128)
Q Consensus 84 ~a~vIG~~T~G~g~~ 98 (128)
.++++|.+|+|.|..
T Consensus 50 d~vi~g~~t~g~G~~ 64 (146)
T PRK07308 50 DIAIVATYTYGDGEL 64 (146)
T ss_pred CEEEEEeCccCCCCC
Confidence 678889999997654
Done!