Query 033051
Match_columns 128
No_of_seqs 130 out of 1139
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 99.9 1.9E-26 6.4E-31 187.5 13.9 106 6-113 233-338 (388)
2 1j7x_A IRBP, interphotorecepto 99.9 2.4E-25 8.3E-30 176.0 13.4 103 5-108 143-252 (302)
3 3k50_A Putative S41 protease; 99.9 2.2E-24 7.7E-29 177.2 11.2 108 5-112 227-345 (403)
4 1k32_A Tricorn protease; prote 99.8 4.8E-21 1.6E-25 168.8 9.5 100 5-113 882-982 (1045)
5 3dor_A Protein CT_858, CPAF; m 99.8 2.2E-19 7.5E-24 152.8 10.6 60 52-112 449-508 (583)
6 1y7o_A ATP-dependent CLP prote 52.7 6.9 0.00023 28.8 2.1 27 55-81 101-127 (218)
7 2raa_A Pyruvate synthase subun 36.2 23 0.00078 25.6 2.7 61 65-126 29-97 (204)
8 3jvv_A Twitching mobility prot 21.1 77 0.0026 24.7 3.4 29 64-92 178-206 (356)
9 3on3_A Keto/oxoacid ferredoxin 20.6 47 0.0016 23.3 1.9 58 66-125 16-82 (183)
10 2hna_A Protein MIOC, flavodoxi 19.2 55 0.0019 21.4 1.9 14 84-97 48-61 (147)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=99.94 E-value=1.9e-26 Score=187.47 Aligned_cols=106 Identities=40% Similarity=0.551 Sum_probs=91.2
Q ss_pred eeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCCe
Q 033051 6 PPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRA 85 (128)
Q Consensus 6 iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~a 85 (128)
|||||+|+||.+.++..++++|++++ .+.+.++|++....+........+++|++||||++||||||+||++||+++++
T Consensus 233 IlDLR~N~GG~~~~~~~~~~~f~~~~-~i~~~~~r~~~~~~~~~~~~~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~ 311 (388)
T 1fc6_A 233 VLDIRNNGGGLFPAGVNVARMLVDRG-DLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRG 311 (388)
T ss_dssp EEECTTCCCBCHHHHHHHHHHHCSSS-EEEEEEETTEEEEEEECCSCCSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSE
T ss_pred EEEcCCCCCCCHHHHHHHHHHHcCCC-cEEEEecCCCceeEEecCCccccCCCCEEEEeCCCCccHHHHHHHHHhhCCCE
Confidence 89999999999999999999999987 56777888887665654332224789999999999999999999999999999
Q ss_pred EEEcccCCCCceEEEEEEEccCCCccee
Q 033051 86 ILVGHKTFGKGKIQVYNVSYCQASSAQM 113 (128)
Q Consensus 86 ~vIG~~T~G~g~~q~~~~~l~dG~~~~~ 113 (128)
++||++|+|+|.+|.. ++|+||+...+
T Consensus 312 ~~vG~~T~Gkg~~~~~-~~L~~g~~l~~ 338 (388)
T 1fc6_A 312 LIAGERTFGKGLIQTV-VDLSDGSGVAV 338 (388)
T ss_dssp EEEESCCCCCCEEEEE-EECTTSCEEEE
T ss_pred EEEeecCCCCCeeeeE-EEcCCCCEEEE
Confidence 9999999999998864 68999975543
No 2
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.93 E-value=2.4e-25 Score=175.97 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=85.6
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCc--eeEEEEcCCCce-eEEeccCC----CccCCCcEEEEEcCCCCChHHHHHH
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDE--TLVNAVDREGHT-LPINMVDG----HAITHDPLVVLVNEGSASASEILAG 77 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~--~~~~~~~r~g~~-~~~~~~~~----~~~~~~pivVLvn~~TaSaaE~~a~ 77 (128)
.|||||+|+||.+..+..++++|++++. .+.+.++|+++. ..++..+. ...+++|++||||++|+||||+||+
T Consensus 143 LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~ 222 (302)
T 1j7x_A 143 LIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNSTDEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAY 222 (302)
T ss_dssp EEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCCEEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHH
T ss_pred EEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCceeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHH
Confidence 3999999999999999999999998764 356777787763 33443221 1236799999999999999999999
Q ss_pred HhhcCCCeEEEcccCCCCceEEEEEEEccCC
Q 033051 78 ALHDNGRAILVGHKTFGKGKIQVYNVSYCQA 108 (128)
Q Consensus 78 alk~~~~a~vIG~~T~G~g~~q~~~~~l~dG 108 (128)
+||+++++++||++|+|++.+|.. ++++||
T Consensus 223 alq~~~~a~vVG~~T~Gk~~~~~~-~~L~~g 252 (302)
T 1j7x_A 223 LMQSLSRATIIGEITSGNLMHSKV-FPFGDT 252 (302)
T ss_dssp HHHHTTCCEEEESCCCCCCSCEEE-EECTTS
T ss_pred HHHhCCCEEEEcccCCCCCCCceE-EEeCCC
Confidence 999999999999999999988764 789988
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=99.91 E-value=2.2e-24 Score=177.21 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCce---eEEEE--cCCCceeE-EeccC-----CCccCCCcEEEEEcCCCCChHH
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDET---LVNAV--DREGHTLP-INMVD-----GHAITHDPLVVLVNEGSASASE 73 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~---~~~~~--~r~g~~~~-~~~~~-----~~~~~~~pivVLvn~~TaSaaE 73 (128)
.|||||+|+||.+.+|..++++|++++.. +.+.+ +|++.... +...+ +.....+|++||+|+.||||||
T Consensus 227 lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~taSa~E 306 (403)
T 3k50_A 227 FVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATRGAAE 306 (403)
T ss_dssp EEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTCCTHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCCccHHH
Confidence 49999999999999999999999998643 66766 45554322 22211 1233457999999999999999
Q ss_pred HHHHHhhcCCCeEEEcccCCCCceEEEEEEEccCCCcce
Q 033051 74 ILAGALHDNGRAILVGHKTFGKGKIQVYNVSYCQASSAQ 112 (128)
Q Consensus 74 ~~a~alk~~~~a~vIG~~T~G~g~~q~~~~~l~dG~~~~ 112 (128)
+|+++||+++++++||++|+|++.+|....++.+|...+
T Consensus 307 ~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~ 345 (403)
T 3k50_A 307 MVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILN 345 (403)
T ss_dssp HHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEE
T ss_pred HHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEE
Confidence 999999999999999999999998876543456665443
No 4
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=4.8e-21 Score=168.81 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=82.5
Q ss_pred ceeeecCCCCCCHHHHHHHHhccccCCceeEEEEcCCCceeEEeccCCCccCCCcEEEEEcCCCCChHHHHHHHhhcCCC
Q 033051 5 SPPSLSIFQGGLVKAGLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGR 84 (128)
Q Consensus 5 ~iiDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~ 84 (128)
.|||||+|+||.+.++. +++|. + +++.+.++|+++...+.. ..+++|++||||++||||||+||++||++++
T Consensus 882 liiDlR~N~GG~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~----~~~~~~~~vL~~~~taSa~e~~~~~l~~~~~ 953 (1045)
T 1k32_A 882 LIVDVRFNGGGFVSQLI--IEKLM-N-KRIGYDNPRRGTLSPYPT----NSVRGKIIAITNEYAGSDGDIFSFSFKKLGL 953 (1045)
T ss_dssp EEEECTTCCCBSCHHHH--HHHHT-C-BCCEEEEESSSCCEEEST----TCBCSEEEEEECTTCCTHHHHHHHHHHHTTS
T ss_pred EEEEcCcCCCCCHHHHH--Hhhcc-C-CcEEEEecCCCceeeccc----cCCCCCEEEEECCCCccHHHHHHHHHhhcCC
Confidence 49999999999998754 77764 3 467888899987665531 2478999999999999999999999999999
Q ss_pred eEEEcccCCCCceEEE-EEEEccCCCccee
Q 033051 85 AILVGHKTFGKGKIQV-YNVSYCQASSAQM 113 (128)
Q Consensus 85 a~vIG~~T~G~g~~q~-~~~~l~dG~~~~~ 113 (128)
++|||++|+| |.+|. ..++|+||+...+
T Consensus 954 ~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~ 982 (1045)
T 1k32_A 954 GKLIGTRTWG-GVVGITPKRRLIDGTVLTQ 982 (1045)
T ss_dssp EEEEESCCCC-CCEECCCCCBCTTSCEECC
T ss_pred EEEEccCCCC-CccccCceEEcCCCCeEEE
Confidence 9999999999 77763 3468999987643
No 5
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=99.79 E-value=2.2e-19 Score=152.79 Aligned_cols=60 Identities=28% Similarity=0.470 Sum_probs=53.9
Q ss_pred CCccCCCcEEEEEcCCCCChHHHHHHHhhcCCCeEEEcccCCCCceEEEEEEEccCCCcce
Q 033051 52 GHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQVYNVSYCQASSAQ 112 (128)
Q Consensus 52 ~~~~~~~pivVLvn~~TaSaaE~~a~alk~~~~a~vIG~~T~G~g~~q~~~~~l~dG~~~~ 112 (128)
+...+++|++||||+.||||||+||++||++++|++||++|+|+|.+|.. .+|+||+...
T Consensus 449 ~~~~~~gPvvVLVN~~SASASEifA~aLKd~~ra~lVGe~T~Gkg~vq~~-~~Lpdg~~l~ 508 (583)
T 3dor_A 449 PRVQYSKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFN-VQFPNRTGIK 508 (583)
T ss_dssp SSCCCCSCEEEEECTTBCTHHHHHHHHHHHTTCEEEEESCCCCCCSCEEE-ECCCCSSCEE
T ss_pred CCccCCCCEEEEECCCCccHHHHHHHHHHhCCCEEEEeeCCCCCCceeeE-EEcCCCCeEE
Confidence 34578999999999999999999999999999999999999999988764 6899987654
No 6
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=52.67 E-value=6.9 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCChHHHHHHHhhc
Q 033051 55 ITHDPLVVLVNEGSASASEILAGALHD 81 (128)
Q Consensus 55 ~~~~pivVLvn~~TaSaaE~~a~alk~ 81 (128)
...+|+++.+++..+|++=+++.+=..
T Consensus 101 ~~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 101 FIKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp HSSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred hcCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 346899999999999999888877544
No 7
>2raa_A Pyruvate synthase subunit PORC; TM0015, pyruvate oxidoreductase subunit PORC (EC 1.2.7.1), S genomics; HET: MSE; 2.12A {Thermotoga maritima MSB8}
Probab=36.22 E-value=23 Score=25.55 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=39.1
Q ss_pred cCCCCChHHHHHHHhhcCCCeEEEcccCCCC---ceEEEEEEEccC-----CCcceeeeeeEEeecCccc
Q 033051 65 NEGSASASEILAGALHDNGRAILVGHKTFGK---GKIQVYNVSYCQ-----ASSAQMLNLIHCVDLSSLN 126 (128)
Q Consensus 65 n~~TaSaaE~~a~alk~~~~a~vIG~~T~G~---g~~q~~~~~l~d-----G~~~~~~~~~~~~~~~~~~ 126 (128)
.+++.+++++++.+....+. -+.+.++||. |......+.+.+ .+...-.+++.|+|+.++.
T Consensus 29 GqGvvta~~iLa~aa~~~G~-~v~~~~~yg~~~RGG~~~s~vRis~~pI~~~s~~~~~Dilv~~d~~~l~ 97 (204)
T 2raa_A 29 GQGAKSASQMLAEAALEAGK-YVQAFPEYGAERTGAPMRAFNRIGDEYIRVRSAVENPDVVVVIDETLLS 97 (204)
T ss_dssp TSCHHHHHHHHHHHHHHTTC-CEEEEEECCC-CTTCEEEEEEEEECC------CCSSCSEEEESSGGGCS
T ss_pred ccHHHHHHHHHHHHHHHcCC-cEEEEeCCChhHcCCeEEEEEEEeCCcccCCCcccCCCEEEEeCHHHHh
Confidence 46678899999999765544 3566677765 222222344555 3445567899999998765
No 8
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=21.12 E-value=77 Score=24.69 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=25.8
Q ss_pred EcCCCCChHHHHHHHhhcCCCeEEEcccC
Q 033051 64 VNEGSASASEILAGALHDNGRAILVGHKT 92 (128)
Q Consensus 64 vn~~TaSaaE~~a~alk~~~~a~vIG~~T 92 (128)
++....+-++.++.+|+..+...++||+|
T Consensus 178 ~~~~~~~~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 178 VHRDTLGFSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp BTTTBSCHHHHHHHHTTSCCSEEEESCCC
T ss_pred eccccCCHHHHHHHHhhhCcCEEecCCCC
Confidence 45566788999999999999999999999
No 9
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural genomics, PSI-2, protein structure initiative; 2.19A {Geobacter sulfurreducens}
Probab=20.63 E-value=47 Score=23.34 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCCCChHHHHHHHh-hcCCCeEEEcccCCCC----ceEEEEEEEccCCC----cceeeeeeEEeecCcc
Q 033051 66 EGSASASEILAGAL-HDNGRAILVGHKTFGK----GKIQVYNVSYCQAS----SAQMLNLIHCVDLSSL 125 (128)
Q Consensus 66 ~~TaSaaE~~a~al-k~~~~a~vIG~~T~G~----g~~q~~~~~l~dG~----~~~~~~~~~~~~~~~~ 125 (128)
+++.+++++++.+. ...+. -+.+.++||. |.+. ..+.+.|.. .....+++.|+|+.++
T Consensus 16 qGvvta~~ila~aa~~~~G~-~v~~~~~yg~~~RGG~~~-s~vris~~~I~sp~i~~~D~lv~~~~~~~ 82 (183)
T 3on3_A 16 QGLILAGVIMAEAASIYDGK-QAVQSQSYGPEARGGASK-SEVIISDGPVDYPKATQCDALLALTQEAC 82 (183)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-EEEEEEEECSSCSSSCEE-EEEEEECC--------CCSEEEESSHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCC-cEEEeeCcChhhcCCeEE-EEEEEeCCccCCCCcCCCCEEEEcCHHHH
Confidence 45678899999998 44443 4455555553 2221 223344321 2345688889987654
No 10
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=19.22 E-value=55 Score=21.42 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=11.7
Q ss_pred CeEEEcccCCCCce
Q 033051 84 RAILVGHKTFGKGK 97 (128)
Q Consensus 84 ~a~vIG~~T~G~g~ 97 (128)
...++|.+|+|.|.
T Consensus 48 d~vi~g~pt~g~g~ 61 (147)
T 2hna_A 48 GIWLVISSTHGAGD 61 (147)
T ss_dssp EEEEEECCTTTTCC
T ss_pred CeEEEEECccCCCC
Confidence 57899999998764
Done!