Query 033054
Match_columns 128
No_of_seqs 114 out of 687
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.9 1.1E-12 3.8E-17 71.1 0.0 28 59-86 1-28 (29)
2 2ls4_A High affinity copper up 97.9 1.2E-08 4.1E-13 53.7 0.0 24 84-107 1-24 (26)
3 2ls2_A High affinity copper up 97.1 1.8E-06 6.2E-11 45.3 0.0 25 22-46 2-26 (26)
4 2vv5_A MSCS, small-conductance 30.9 1.7E+02 0.0058 22.0 7.5 84 17-100 21-109 (286)
5 2jwa_A Receptor tyrosine-prote 29.2 49 0.0017 18.7 2.7 19 87-105 20-38 (44)
6 1iij_A ERBB-2 receptor protein 17.9 60 0.0021 17.5 1.5 17 87-103 16-32 (35)
7 3l1l_A Arginine/agmatine antip 17.6 3.4E+02 0.012 20.7 8.9 20 87-106 410-429 (445)
8 3arc_L Photosystem II reaction 16.5 1.5E+02 0.0051 16.0 3.1 20 23-42 13-32 (37)
9 3gia_A Uncharacterized protein 14.9 4E+02 0.014 20.3 10.4 25 85-109 401-425 (444)
10 3arc_H Photosystem II reaction 11.4 1.7E+02 0.0059 17.8 2.4 23 16-38 21-43 (65)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-12 Score=71.07 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 033054 59 SGILQTLMYAFRIGLAYLVMLAVMSFNI 86 (128)
Q Consensus 59 ~~l~~~~l~~~~~~l~YlLMLivMTfN~ 86 (128)
.|++|+++|++|.++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999996
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.91 E-value=1.2e-08 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccc
Q 033054 84 FNIGVLLAAVAGYSVGFLIFGSQV 107 (128)
Q Consensus 84 fN~~l~~avi~G~~iG~~~f~~~~ 107 (128)
||+|+++||++|+++||++|++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999999875
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.10 E-value=1.8e-06 Score=45.31 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 033054 22 ESFSCYILALIFVFMISLTVEWISH 46 (128)
Q Consensus 22 ~t~~~~~~s~i~vf~la~~~e~l~~ 46 (128)
+|.+++++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5789999999999999999999973
No 4
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.86 E-value=1.7e+02 Score=22.00 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCccCChHHHHHHHHHHHHHHHHHHHHHHh-hhh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HH
Q 033054 17 PGWPGESFSCYILALIFVFMISLTVEWISHA-KLI--KSGISNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVL--LA 91 (128)
Q Consensus 17 ~~W~~~t~~~~~~s~i~vf~la~~~e~l~~~-r~~--~p~~~~~~~~l~~~~l~~~~~~l~YlLMLivMTfN~~l~--~a 91 (128)
..|-.+.....+.+.+.+++.-++.+.++.. ++. +.+.+....++++.++..+-..++-++.|...-.|..-+ .+
T Consensus 21 ~~~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~ 100 (286)
T 2vv5_A 21 QALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVL 100 (286)
T ss_dssp ----CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444555666655554444455544322 221 222223344555555555555555555555555554323 23
Q ss_pred HHHHHHHHH
Q 033054 92 AVAGYSVGF 100 (128)
Q Consensus 92 vi~G~~iG~ 100 (128)
-++|.++|.
T Consensus 101 g~~g~aig~ 109 (286)
T 2vv5_A 101 GAAGLVVGL 109 (286)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555554
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.23 E-value=49 Score=18.68 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 033054 87 GVLLAAVAGYSVGFLIFGS 105 (128)
Q Consensus 87 ~l~~avi~G~~iG~~~f~~ 105 (128)
|+++.+++|..++.++=.+
T Consensus 20 Gvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheehh
Confidence 3667778887777665433
No 6
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=17.93 E-value=60 Score=17.46 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033054 87 GVLLAAVAGYSVGFLIF 103 (128)
Q Consensus 87 ~l~~avi~G~~iG~~~f 103 (128)
++++.+++|.++|.++=
T Consensus 16 glll~vii~l~~~~~iR 32 (35)
T 1iij_A 16 GVLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHhheEEe
Confidence 37778888888887663
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.64 E-value=3.4e+02 Score=20.69 Aligned_cols=20 Identities=0% Similarity=-0.193 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 033054 87 GVLLAAVAGYSVGFLIFGSQ 106 (128)
Q Consensus 87 ~l~~avi~G~~iG~~~f~~~ 106 (128)
.+...+++..++-.+.+.++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444444333
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=16.50 E-value=1.5e+02 Score=16.03 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 033054 23 SFSCYILALIFVFMISLTVE 42 (128)
Q Consensus 23 t~~~~~~s~i~vf~la~~~e 42 (128)
+....++.++.+|++|++..
T Consensus 13 NRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhh
Confidence 45667778888999998764
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=14.87 E-value=4e+02 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccc
Q 033054 85 NIGVLLAAVAGYSVGFLIFGSQVFR 109 (128)
Q Consensus 85 N~~l~~avi~G~~iG~~~f~~~~~~ 109 (128)
+.++.+.+.++..+.+....++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
T 3gia_A 401 VFYGIIATFIGVLIFEIIYRKVTKR 425 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3446666777777777777655443
No 10
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=11.39 E-value=1.7e+02 Score=17.78 Aligned_cols=23 Identities=26% Similarity=0.713 Sum_probs=15.5
Q ss_pred cCCCccCChHHHHHHHHHHHHHH
Q 033054 16 FPGWPGESFSCYILALIFVFMIS 38 (128)
Q Consensus 16 F~~W~~~t~~~~~~s~i~vf~la 38 (128)
-++|-++---..+.+++++|++-
T Consensus 21 aPGWGTtplMgv~m~Lf~vFl~i 43 (65)
T 3arc_H 21 APGWGTTPLMAVFMGLFLVFLLI 43 (65)
T ss_dssp BSTTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCccChhHHHHHHHHHHHHHHH
Confidence 46887777677777777765443
Done!