Query 033054
Match_columns 128
No_of_seqs 114 out of 687
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033054.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033054hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 21.3 51 0.0037 16.5 3.1 20 23-42 13-32 (37)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.4 1.7E+02 0.012 20.2 5.7 45 63-107 5-49 (248)
3 d2axth1 f.23.33.1 (H:2-65) Pho 12.7 70 0.0051 18.0 2.4 23 16-38 21-43 (64)
4 d2axti1 f.23.37.1 (I:1-35) Pho 12.2 93 0.0068 15.3 3.0 24 90-113 8-31 (35)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 10.4 84 0.0061 14.9 1.9 13 88-100 10-22 (32)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 10.4 1.5E+02 0.011 16.4 7.7 46 55-100 36-83 (86)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 8.4 82 0.006 14.7 1.4 9 32-40 14-22 (30)
8 d1q90m_ f.23.25.1 (M:) PetM su 7.3 1.1E+02 0.0079 14.7 1.6 13 92-104 16-28 (34)
9 d1xu2r_ g.24.1.2 (R:) Tumor ne 6.0 49 0.0036 16.4 -0.2 18 111-128 13-30 (36)
10 d1swya_ d.2.1.3 (A:) Phage T4 5.8 84 0.0061 19.8 0.8 12 77-88 97-108 (164)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.33 E-value=51 Score=16.49 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 033054 23 SFSCYILALIFVFMISLTVE 42 (128)
Q Consensus 23 t~~~~~~s~i~vf~la~~~e 42 (128)
+....++.++.+|++|++..
T Consensus 13 NrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 35566777888999988765
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.43 E-value=1.7e+02 Score=20.18 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccc
Q 033054 63 QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQV 107 (128)
Q Consensus 63 ~~~l~~~~~~l~YlLMLivMTfN~~l~~avi~G~~iG~~~f~~~~ 107 (128)
.+++-.+..+..|...++..-=+.++.+.+++-..++.++|-+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 457777888888888887777777777767777777777776654
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.74 E-value=70 Score=17.98 Aligned_cols=23 Identities=26% Similarity=0.713 Sum_probs=16.3
Q ss_pred cCCCccCChHHHHHHHHHHHHHH
Q 033054 16 FPGWPGESFSCYILALIFVFMIS 38 (128)
Q Consensus 16 F~~W~~~t~~~~~~s~i~vf~la 38 (128)
-++|-++---..+.+++++|++-
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~i 43 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLLI 43 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHHH
Confidence 47888777777777777775443
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.16 E-value=93 Score=15.30 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcccccccCCc
Q 033054 90 LAAVAGYSVGFLIFGSQVFRNNLK 113 (128)
Q Consensus 90 ~avi~G~~iG~~~f~~~~~~~~~~ 113 (128)
.-+++-..++-++||-.+-...+|
T Consensus 8 Vy~vV~fFv~lFiFGFLSnDP~Rn 31 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCS
T ss_pred hhhHHHHHHHHHHHhhccCCCCCC
Confidence 344555667778888776544444
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.43 E-value=84 Score=14.86 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q 033054 88 VLLAAVAGYSVGF 100 (128)
Q Consensus 88 l~~avi~G~~iG~ 100 (128)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666666664
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=10.38 E-value=1.5e+02 Score=16.43 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHH
Q 033054 55 SNVASGILQTLMYAFRIGLAYLVMLAVMSFNIGVLLAA--VAGYSVGF 100 (128)
Q Consensus 55 ~~~~~~l~~~~l~~~~~~l~YlLMLivMTfN~~l~~av--i~G~~iG~ 100 (128)
++...+++..+.+.+-..++.+..|-.+-.|..-+++. ++|.++|+
T Consensus 36 ~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 36 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34456666667776667777777777777777644443 34555554
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.38 E-value=82 Score=14.75 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 033054 32 IFVFMISLT 40 (128)
Q Consensus 32 i~vf~la~~ 40 (128)
+++|+++++
T Consensus 14 i~lfffaif 22 (30)
T d2axtt1 14 IALFFFAIF 22 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.28 E-value=1.1e+02 Score=14.73 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhc
Q 033054 92 AVAGYSVGFLIFG 104 (128)
Q Consensus 92 vi~G~~iG~~~f~ 104 (128)
.++|.++|+.+..
T Consensus 16 tl~glaigfvllr 28 (34)
T d1q90m_ 16 TLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhee
Confidence 3578888887654
No 9
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.00 E-value=49 Score=16.37 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=11.4
Q ss_pred CCcCCCCCCCCCCCCCCC
Q 033054 111 NLKIEPYQDLSDLPPLNC 128 (128)
Q Consensus 111 ~~~~~~~~~~~~~~~~~c 128 (128)
+.++-..|-++.+||+-|
T Consensus 13 ac~pc~lrcs~~~ppl~c 30 (36)
T d1xu2r_ 13 ACIPCQLRCSSNTPPLTC 30 (36)
T ss_dssp EEEEGGGTTTSSSCCGGG
T ss_pred hcccceeecCCCCCchhh
Confidence 344445566677888776
No 10
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=5.82 E-value=84 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred HHHHHHhhhHHH
Q 033054 77 VMLAVMSFNIGV 88 (128)
Q Consensus 77 LMLivMTfN~~l 88 (128)
-.|+.|+||+|.
T Consensus 97 ~alvs~~fNlG~ 108 (164)
T d1swya_ 97 CALINMVFQMGE 108 (164)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHeechhhcCC
Confidence 368999999875
Done!