BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033055
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V (Rcmti-V)
(Nmr, Minimized Average Structure)
Length = 69
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%)
Query: 62 DCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKV 121
CP KSSWP LVG G VA AIIE++NP V A++L EGTPVT+D+R +RVR+WVNK+G V
Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 62
Query: 122 IRVPRIG 128
+ PRIG
Sbjct: 63 VSPPRIG 69
>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita
Maxima Trypsin Inhibitor-V Determined By Nmr
Spectroscopy
Length = 69
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%)
Query: 62 DCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKV 121
CP KSSWP LVG G VA AIIE++NP V A++L EGTPVT+D+R +RVR+WVNK+G V
Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 62
Query: 122 IRVPRIG 128
+ PRIG
Sbjct: 63 VSPPRIG 69
>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin
Inhibitor (Luti)
Length = 70
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 63 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI 122
CP K++WPELVGK+G +AAA +E+EN VHAIVL EG+ +T+D+R DRV V VN G V
Sbjct: 5 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVT 64
Query: 123 RVPRI 127
VP I
Sbjct: 65 SVPHI 69
>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor
Length = 68
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 63 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI 122
C KSSWP+LVG G A A+IE+ENP V A+++ G+ T+D+R DRVRVWV ++G V
Sbjct: 3 CQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVA 62
Query: 123 RVPRIG 128
R P IG
Sbjct: 63 RPPTIG 68
>pdb|1Y4A|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 64
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VTR YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTRSYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1LW6|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
Length = 64
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V+K + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At
1.84 Angstrom Resolution
pdb|3RDZ|C Chain C, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|D Chain D, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
Length = 79
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%)
Query: 63 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI 122
C K WPELVG+ G AA IIE EN V AIVL EG+ V RD R DRV V+V+++G V+
Sbjct: 14 CSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVV 73
Query: 123 RVP 125
P
Sbjct: 74 DTP 76
>pdb|1TM3|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TO2|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
Length = 64
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT++YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TM1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
Length = 64
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TM7|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
Length = 64
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTYEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TMG|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
Length = 64
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TM5|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
Length = 64
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTAEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|3CI2|A Chain A, Refinement Of The Three-Dimensional Solution Structure Of
Barley Serine Proteinase Inhibitor 2 And Comparison With
The Structures In Crystals
Length = 66
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V+K + +VP
Sbjct: 4 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 63
Query: 126 RIG 128
R+G
Sbjct: 64 RVG 66
>pdb|1Y3B|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
Length = 64
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMSYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1COA|I Chain I, The Effect Of Cavity Creating Mutations In The Hydrophobic
Core Of Chymotrypsin Inhibitor 2
Length = 64
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V+K V VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNVAEVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TM4|I Chain I, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
Length = 64
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTGEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y34|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
Length = 64
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMAYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|2CI2|I Chain I, Crystal And Molecular Structure Of The Serine Proteinase
Inhibitor Ci-2 From Barley Seeds
pdb|2SNI|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 83
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR++V+K + VP
Sbjct: 21 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVP 80
Query: 126 RIG 128
R+G
Sbjct: 81 RVG 83
>pdb|1YPC|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ A +I ++ P IVL GT VT +YRIDRVR++V+K + +VP
Sbjct: 2 KTEWPELVGKSVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y3F|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
Length = 64
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRVR+ V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLAVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y1K|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
Length = 64
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT V +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVAMEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1YPB|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK A +I ++ P IVL GT VT +YRIDRVR++V+K + +VP
Sbjct: 2 KTEWPELVGKGVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1YPA|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK A +I ++ P IVL GT VT +YRIDRVR++V+K + +VP
Sbjct: 2 KTEWPELVGKAVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y3D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
Length = 64
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRIDRV ++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVALFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y48|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
Length = 64
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +YRID VR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDAVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y3C|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
Length = 64
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT +Y IDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYAIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1Y33|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
Length = 64
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT V +YRIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVPMEYRIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1TO1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
Length = 64
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVP 125
K+ WPELVGK+ E A +I ++ P IVL GT VT + RIDRVR++V++ + +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEARIDRVRLFVDRLDNIAQVP 61
Query: 126 RIG 128
R+G
Sbjct: 62 RVG 64
>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 45
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 62 DCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTR 104
CP KSSWP LVG G VA AIIE++NP V A++L EGTPVT+
Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45
>pdb|1CIS|A Chain A, Context Dependence Of Protein Secondary Structure
Formation. The Three-Dimensional Structure And Stability
Of A Hybrid Between Chymotrypsin Inhibitor 2 And Helix E
From Subtilisin Carlsberg
Length = 66
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTR---DYRIDRVRVWVNKKGKVI 122
K+ WPELVGK+ E A +I ++ P I++LE V +YRIDRVR+ V+K +
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQ-IIVLEKQAVDNAYAEYRIDRVRLAVDKLDNIA 60
Query: 123 RVPRIG 128
+VPR+G
Sbjct: 61 QVPRVG 66
>pdb|1SBN|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P + L EG+PVTRD R +RVRV+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTRDLRYNRVRVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|4B1T|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 70
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT+D R +RVRV+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|4B2B|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2C|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 71
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT+D R +RVRV+ N V+ VP
Sbjct: 10 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVPH 69
Query: 127 IG 128
+G
Sbjct: 70 VG 71
>pdb|4B2A|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 66
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT+D R +RVRV+ N V+ VP
Sbjct: 5 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTNVVNHVPH 64
Query: 127 IG 128
+G
Sbjct: 65 VG 66
>pdb|1CSE|I Chain I, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 70
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P + L EG+PVT D R +RVRV+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|1MEE|I Chain I, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 64
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P + L EG+PVT D R +RVRV+ N V+ VP
Sbjct: 3 SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 62
Query: 127 IG 128
+G
Sbjct: 63 VG 64
>pdb|4H4F|B Chain B, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 70
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT D R +RVRV+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|1TEC|I Chain I, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|I Chain I, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|I Chain I, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
pdb|1ACB|I Chain I, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1EGL|A Chain A, The Solution Structure Of Eglin C Based On Measurements Of
Many Noes And Coupling Constants And Its Comparison With
X- Ray Structures
Length = 70
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT D R +RVRV+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|1SIB|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVI-RVPR 126
S+PE+VGK + A P L EG+PVT D R +RV+V+ N V+ VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVKVFYNPGTNVVNHVPH 68
Query: 127 IG 128
+G
Sbjct: 69 VG 70
>pdb|1HYM|B Chain B, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 24
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 105 DYRIDRVRVWVNKKGKVIRVPRIG 128
D+R +RVR+WVNK+G V+ PRIG
Sbjct: 1 DFRCNRVRIWVNKRGLVVSPPRIG 24
>pdb|1CQ4|A Chain A, Ci2 Mutant With Tetraglutamine (mgqqqqgm) Replacing Met59
Length = 47
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVT 103
K+ WPELVGK+ E A +I ++ P IVL GT VT
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVT 39
>pdb|1CIQ|A Chain A, Complex Of Two Fragments Of Ci2, Residues 1-40 And 41-64
Length = 40
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVT 103
K+ WPELVGK+ E A +I ++ P IVL GT VT
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVT 39
>pdb|1CIR|A Chain A, Complex Of Two Fragments Of Ci2 [(1-40)(Dot)(41-64)]
Length = 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 66 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVT 103
K+ WPELVGK+ E A +I ++ P IVL GT VT
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVT 39
>pdb|1CIQ|B Chain B, Complex Of Two Fragments Of Ci2, Residues 1-40 And 41-64
pdb|1CQ4|B Chain B, Ci2 Mutant With Tetraglutamine (mgqqqqgm) Replacing Met59
pdb|1CIR|B Chain B, Complex Of Two Fragments Of Ci2 [(1-40)(Dot)(41-64)]
Length = 24
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 105 DYRIDRVRVWVNKKGKVIRVPRIG 128
+YRIDRVR++V+K + +VPR+G
Sbjct: 1 EYRIDRVRLFVDKLDNIAQVPRVG 24
>pdb|1EGP|A Chain A, Proteinase Inhibitor Eglin C With Hydrolysed Reactive
Center
Length = 45
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 68 SWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVT 103
S+PE+VGK + A P + L EG+PVT
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVT 44
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 KGVVEDGPNLVMSAFDCPRKSSWPELVGKNGEV 79
K +EDG N ++S D PR + P + + E+
Sbjct: 82 KNPIEDGXNFIVSHTDSPRLDAKPSPISEENEL 114
>pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
pdb|1FJ1|E Chain E, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|F Chain F, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 257
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 51 EDGPNLVMSAFDCPRKSSWPELVGKNGEVAAAII 84
EDG LV KSS E + GEV+ II
Sbjct: 88 EDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKII 121
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 28 EPCLTDGKE-LGSEVIVSALKGVVEDGPNLVMSAFDCPRKSSWPELVGKNGEVAAAIIEK 86
EP + K LGS+V+ S + + E N V++ D R+ EL+ G+V + +
Sbjct: 141 EPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDT 200
Query: 87 ENPCVHAIVLLEGTPVTRDY 106
+ L++G V +D+
Sbjct: 201 K--------LIKGVIVDKDF 212
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 35 KELGSEVIVSALKGVVEDGPNLVMSAFDC 63
KEL EV + K V+DG ++ +AF+C
Sbjct: 1083 KELIREVEMGPFKHTVDDGLDIRKAAFEC 1111
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 35 KELGSEVIVSALKGVVEDGPNLVMSAFDC 63
KEL EV + K V+DG ++ +AF+C
Sbjct: 1060 KELIREVEMGPFKHTVDDGLDIRKAAFEC 1088
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,351,988
Number of Sequences: 62578
Number of extensions: 127480
Number of successful extensions: 273
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 52
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)