Query 033056
Match_columns 128
No_of_seqs 102 out of 193
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 52.8 2.1 0.00015 23.3 0.8 11 18-28 4-14 (29)
2 d1zr9a1 g.37.1.4 (A:28-94) Zin 45.7 1.9 0.00014 27.0 -0.1 15 70-84 14-28 (67)
3 d1ef4a_ a.4.11.1 (A:) RNA poly 41.2 3 0.00021 25.5 0.2 12 20-31 3-14 (55)
4 d1twfj_ a.4.11.1 (J:) RNA poly 39.6 3.6 0.00026 25.8 0.5 11 20-30 4-14 (65)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 29.3 4.2 0.0003 26.2 -0.6 21 27-47 17-37 (87)
6 d1cc1l_ e.18.1.1 (L:) Nickel-i 28.0 3.7 0.00027 32.1 -1.2 9 72-80 479-487 (487)
7 d1e3db_ e.18.1.1 (B:) Nickel-i 27.2 3.9 0.00029 32.3 -1.2 8 73-80 530-537 (537)
8 d1yq9h1 e.18.1.1 (H:7-536) Nic 26.0 4.2 0.00031 31.8 -1.2 9 72-80 522-530 (530)
9 d1frfl_ e.18.1.1 (L:) Nickel-i 25.0 4.6 0.00033 32.2 -1.2 9 72-80 535-543 (543)
10 d1x63a2 g.39.1.3 (A:45-76) Fou 24.8 6.3 0.00046 21.6 -0.3 9 71-79 20-28 (32)
11 d1wuil1 e.18.1.1 (L:19-552) Ni 24.4 4.8 0.00035 31.9 -1.2 9 72-80 526-534 (534)
12 d2dkta2 g.93.1.1 (A:82-137) RI 23.1 19 0.0014 21.7 1.7 17 17-33 31-47 (56)
13 d1kvva_ d.201.1.1 (A:) SRP19 { 22.5 6.5 0.00047 25.9 -0.6 22 27-48 20-41 (104)
14 d1twfl_ g.41.9.2 (L:) RBP12 su 21.7 11 0.00083 22.0 0.5 14 18-31 19-32 (46)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=52.84 E-value=2.1 Score=23.31 Aligned_cols=11 Identities=64% Similarity=1.238 Sum_probs=9.3
Q ss_pred ccceeecCCcc
Q 033056 18 VNFIRCSNCGK 28 (128)
Q Consensus 18 v~~V~C~NCgr 28 (128)
-++|.|-|||+
T Consensus 4 r~~ikCfNCGk 14 (29)
T d1nc8a_ 4 RKVIRCWNCGK 14 (29)
T ss_dssp CCCCBCTTTSC
T ss_pred cceeEeecCCc
Confidence 46899999997
No 2
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.70 E-value=1.9 Score=26.99 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=11.9
Q ss_pred eeEEeeeeceecccc
Q 033056 70 KMQYCVSCAIHSHVV 84 (128)
Q Consensus 70 Kl~YCVSCAIHskVV 84 (128)
-.+|||.|+-|..--
T Consensus 14 gqfYCv~C~K~F~se 28 (67)
T d1zr9a1 14 GLHRCLACARYFIDS 28 (67)
T ss_dssp GCSEETTTTEECSSH
T ss_pred CEEecccccCccCCH
Confidence 468999999987643
No 3
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.24 E-value=3 Score=25.47 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.3
Q ss_pred ceeecCCcceee
Q 033056 20 FIRCSNCGKCCP 31 (128)
Q Consensus 20 ~V~C~NCgr~vP 31 (128)
||||-.||+.+-
T Consensus 3 PVRCFTCGkvia 14 (55)
T d1ef4a_ 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CcCcCCCchhHH
Confidence 899999999663
No 4
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.65 E-value=3.6 Score=25.77 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=9.8
Q ss_pred ceeecCCccee
Q 033056 20 FIRCSNCGKCC 30 (128)
Q Consensus 20 ~V~C~NCgr~v 30 (128)
||||-.||+.+
T Consensus 4 PVRCFTCgkvi 14 (65)
T d1twfj_ 4 PVRCFSCGKVV 14 (65)
T ss_dssp CSBCTTTCCBC
T ss_pred CcccCCCCcCh
Confidence 89999999965
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.30 E-value=4.2 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.1
Q ss_pred cceeecccceeeeeecccchh
Q 033056 27 GKCCPKDKAIKRFLVRNIVEQ 47 (128)
Q Consensus 27 gr~vPKDKAIKrf~irNiVEa 47 (128)
||.||++.|+....+.-|.++
T Consensus 17 GRRv~k~~aV~~P~~~eI~~a 37 (87)
T d1lnga_ 17 GRKVPEELAIEKPSLKDIEKA 37 (87)
T ss_dssp TCCSCTTTCBSSCCHHHHHHH
T ss_pred cCccCHHHHccCCCHHHHHHH
Confidence 699999999987666655553
No 6
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=27.97 E-value=3.7 Score=32.07 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.5
Q ss_pred EEeeeecee
Q 033056 72 QYCVSCAIH 80 (128)
Q Consensus 72 ~YCVSCAIH 80 (128)
-=|+|||.|
T Consensus 479 DPCisCa~H 487 (487)
T d1cc1l_ 479 DPCLGCAVH 487 (487)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999998
No 7
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=27.15 E-value=3.9 Score=32.33 Aligned_cols=8 Identities=38% Similarity=1.273 Sum_probs=6.5
Q ss_pred Eeeeecee
Q 033056 73 YCVSCAIH 80 (128)
Q Consensus 73 YCVSCAIH 80 (128)
=|+|||.|
T Consensus 530 PC~sCa~H 537 (537)
T d1e3db_ 530 PCIACSTH 537 (537)
T ss_dssp CBHHHHHC
T ss_pred cccccccc
Confidence 48888888
No 8
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=26.03 E-value=4.2 Score=31.78 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=6.6
Q ss_pred EEeeeecee
Q 033056 72 QYCVSCAIH 80 (128)
Q Consensus 72 ~YCVSCAIH 80 (128)
-=|+|||.|
T Consensus 522 DPC~sCa~H 530 (530)
T d1yq9h1 522 DPCIACGVH 530 (530)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 348888887
No 9
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=24.97 E-value=4.6 Score=32.19 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.3
Q ss_pred EEeeeecee
Q 033056 72 QYCVSCAIH 80 (128)
Q Consensus 72 ~YCVSCAIH 80 (128)
-=|+|||.|
T Consensus 535 DPC~sCa~H 543 (543)
T d1frfl_ 535 DPCIACGVH 543 (543)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 349999988
No 10
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.82 E-value=6.3 Score=21.57 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.7
Q ss_pred eEEeeeece
Q 033056 71 MQYCVSCAI 79 (128)
Q Consensus 71 l~YCVSCAI 79 (128)
-.|||+|--
T Consensus 20 d~ycvtche 28 (32)
T d1x63a2 20 DFYCVTCHE 28 (32)
T ss_dssp EEEEHHHHH
T ss_pred cEEEEEeec
Confidence 578999843
No 11
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.37 E-value=4.8 Score=31.87 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.1
Q ss_pred EEeeeecee
Q 033056 72 QYCVSCAIH 80 (128)
Q Consensus 72 ~YCVSCAIH 80 (128)
-=|+|||.|
T Consensus 526 DPCisCa~H 534 (534)
T d1wuil1 526 DPCIACGVH 534 (534)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 349999988
No 12
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.15 E-value=19 Score=21.72 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.4
Q ss_pred cccceeecCCcceeecc
Q 033056 17 HVNFIRCSNCGKCCPKD 33 (128)
Q Consensus 17 hv~~V~C~NCgr~vPKD 33 (128)
-..+.||+.|+.|+++.
T Consensus 31 ~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp GGGEEEETTTTEEEEGG
T ss_pred CccccccCccccccCcc
Confidence 35899999999999874
No 13
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.50 E-value=6.5 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=17.2
Q ss_pred cceeecccceeeeeecccchhh
Q 033056 27 GKCCPKDKAIKRFLVRNIVEQA 48 (128)
Q Consensus 27 gr~vPKDKAIKrf~irNiVEaa 48 (128)
||.||++.||..-.+.-|.+++
T Consensus 20 GRRv~k~~aV~~P~~~eI~~a~ 41 (104)
T d1kvva_ 20 GRRIPRRFAVPNVKLHELVEAS 41 (104)
T ss_dssp CCCSCTTTCCSSCCHHHHHHHH
T ss_pred cCccCHHHhcCCCCHHHHHHHH
Confidence 6999999999877766666643
No 14
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.72 E-value=11 Score=22.04 Aligned_cols=14 Identities=29% Similarity=0.824 Sum_probs=11.2
Q ss_pred ccceeecCCcceee
Q 033056 18 VNFIRCSNCGKCCP 31 (128)
Q Consensus 18 v~~V~C~NCgr~vP 31 (128)
..+|+|-+||--+-
T Consensus 19 ~d~irCreCG~RIl 32 (46)
T d1twfl_ 19 TDAVRCKDCGHRIL 32 (46)
T ss_dssp TSTTCCSSSCCCCC
T ss_pred CCcEEeccCCcEEE
Confidence 36899999998654
Done!