Query 033058
Match_columns 128
No_of_seqs 128 out of 1023
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jnb_A NHP2-like protein 1; sp 100.0 2.4E-38 8.4E-43 230.8 11.8 128 1-128 17-144 (144)
2 2ale_A SNU13, NHP2/L7AE family 100.0 4.9E-37 1.7E-41 221.4 13.4 124 5-128 3-126 (134)
3 2aif_A Ribosomal protein L7A; 100.0 1.8E-36 6.2E-41 218.5 12.9 128 1-128 8-135 (135)
4 3o85_A Ribosomal protein L7AE; 100.0 4.7E-36 1.6E-40 213.1 14.1 120 6-127 3-122 (122)
5 2lbw_A H/ACA ribonucleoprotein 100.0 4E-30 1.4E-34 182.1 13.5 112 15-126 1-121 (121)
6 1vq8_F 50S ribosomal protein L 100.0 2.6E-29 8.8E-34 177.4 13.9 117 8-126 2-119 (120)
7 2fc3_A 50S ribosomal protein L 100.0 6.4E-29 2.2E-33 176.4 13.7 117 8-126 1-118 (124)
8 1rlg_A 50S ribosomal protein L 100.0 9.2E-29 3.1E-33 174.3 11.6 111 14-126 7-117 (119)
9 3u5e_c L32, RP73, YL38, 60S ri 100.0 1.4E-28 4.7E-33 170.2 7.5 96 15-111 3-99 (105)
10 4a18_G RPL30; ribosome, eukary 100.0 1.7E-28 5.8E-33 169.4 7.6 98 14-112 2-100 (104)
11 3iz5_f 60S ribosomal protein L 99.9 6.9E-28 2.4E-32 168.9 8.7 96 18-114 10-106 (112)
12 3v7q_A Probable ribosomal prot 99.9 3.2E-27 1.1E-31 162.2 11.6 95 19-118 4-98 (101)
13 3on1_A BH2414 protein; structu 99.9 5E-27 1.7E-31 161.1 11.5 94 20-118 4-97 (101)
14 3cpq_A 50S ribosomal protein L 99.9 2.7E-27 9.3E-32 164.8 10.3 102 15-117 2-104 (110)
15 1xbi_A 50S ribosomal protein L 99.9 2.7E-27 9.3E-32 167.3 9.6 107 14-126 12-118 (120)
16 3j21_Z 50S ribosomal protein L 99.9 8.1E-27 2.8E-31 159.5 9.6 94 22-116 3-97 (99)
17 1w41_A 50S ribosomal protein L 99.9 7.7E-27 2.6E-31 160.0 7.4 94 21-115 3-97 (101)
18 2xzm_U Ribosomal protein L7AE 99.9 1.2E-26 4.1E-31 165.5 6.9 103 15-117 5-122 (126)
19 3v7e_A Ribosome-associated pro 99.9 1.2E-25 4.3E-30 149.2 9.3 79 26-105 3-81 (82)
20 3vi6_A 60S ribosomal protein L 99.9 2.7E-24 9.1E-29 153.1 7.0 98 20-118 13-112 (125)
21 3u5c_M 40S ribosomal protein S 99.9 6.3E-24 2.2E-28 154.4 7.9 105 14-118 20-138 (143)
22 3jyw_G 60S ribosomal protein L 99.9 6.6E-23 2.3E-27 143.8 4.6 88 31-119 22-112 (113)
23 2zkr_f 60S ribosomal protein L 99.9 2.9E-22 1E-26 157.9 5.5 93 31-124 132-227 (266)
24 4a17_F RPL7A, 60S ribosomal pr 99.9 5.3E-21 1.8E-25 149.6 12.0 113 10-123 92-215 (255)
25 2kg4_A Growth arrest and DNA-d 99.8 9E-21 3.1E-25 140.5 11.4 95 16-110 17-133 (165)
26 3izc_H 60S ribosomal protein R 99.8 2.2E-21 7.7E-26 152.0 8.2 114 9-123 96-222 (256)
27 3iz5_H 60S ribosomal protein L 99.8 1.2E-19 4E-24 141.8 9.7 111 9-123 94-218 (258)
28 3cg6_A Growth arrest and DNA-d 99.5 9.2E-14 3.1E-18 100.8 12.6 106 17-123 8-133 (146)
29 3ffm_A Growth arrest and DNA-d 99.5 6.2E-13 2.1E-17 98.1 12.6 105 18-122 30-153 (167)
30 3ir9_A Peptide chain release f 96.5 0.012 4.2E-07 42.8 7.9 77 29-106 41-161 (166)
31 1x52_A Pelota homolog, CGI-17; 95.3 0.058 2E-06 37.4 6.8 76 28-106 32-114 (124)
32 3oby_A Protein pelota homolog; 94.6 0.067 2.3E-06 43.2 6.2 83 20-107 254-340 (352)
33 3j15_A Protein pelota; ribosom 94.3 0.046 1.6E-06 44.1 4.6 64 30-93 276-342 (357)
34 2qi2_A Pelota, cell division p 94.2 0.11 3.8E-06 41.8 6.7 72 33-107 264-336 (347)
35 3nk6_A 23S rRNA methyltransfer 94.1 0.28 9.4E-06 38.2 8.6 77 35-115 36-114 (277)
36 3e20_C Eukaryotic peptide chai 93.8 0.19 6.4E-06 41.8 7.4 64 30-93 301-409 (441)
37 3obw_A Protein pelota homolog; 93.6 0.13 4.6E-06 41.6 6.0 74 31-106 282-360 (364)
38 1gz0_A Hypothetical tRNA/RRNA 93.4 0.4 1.4E-05 36.7 8.2 72 34-107 13-86 (253)
39 1b93_A Protein (methylglyoxal 92.5 0.25 8.4E-06 35.6 5.5 61 38-98 70-135 (152)
40 3agk_A Peptide chain release f 92.3 0.4 1.4E-05 38.5 7.2 60 30-92 295-354 (373)
41 3agj_B Protein pelota homolog; 91.7 0.41 1.4E-05 38.4 6.5 76 30-107 268-349 (358)
42 3mca_B Protein DOM34, elongati 91.4 0.4 1.4E-05 39.0 6.3 63 30-93 287-356 (390)
43 1dt9_A ERF1, protein (eukaryot 91.3 0.59 2E-05 38.4 7.2 74 30-105 296-413 (437)
44 2xw6_A MGS, methylglyoxal synt 90.9 0.23 8E-06 35.0 3.8 55 37-92 61-121 (134)
45 1vmd_A MGS, methylglyoxal synt 90.5 0.31 1E-05 36.0 4.3 60 38-98 86-151 (178)
46 2vgn_A DOM34; translation term 89.8 1.4 4.7E-05 35.8 8.1 75 30-106 293-373 (386)
47 2ohw_A YUEI protein; structura 89.4 2.9 0.0001 29.2 8.5 45 40-85 53-97 (133)
48 3nkl_A UDP-D-quinovosamine 4-d 88.8 0.85 2.9E-05 30.5 5.3 55 36-90 51-105 (141)
49 1ipa_A RRMH, RNA 2'-O-ribose m 87.7 1.4 4.9E-05 33.9 6.6 70 35-106 30-101 (274)
50 2yvq_A Carbamoyl-phosphate syn 86.5 0.91 3.1E-05 31.7 4.4 44 40-83 86-131 (143)
51 2l82_A Designed protein OR32; 85.3 7.4 0.00025 27.0 10.3 82 39-121 15-101 (162)
52 3fcs_B Integrin beta-3; beta p 81.3 5.9 0.0002 34.5 8.2 101 21-125 202-353 (690)
53 1x7o_A Avirb, rRNA methyltrans 80.0 3.3 0.00011 32.1 5.6 68 35-106 42-111 (287)
54 3szu_A ISPH, 4-hydroxy-3-methy 75.2 5.9 0.0002 31.7 5.9 72 50-126 225-297 (328)
55 2ggt_A SCO1 protein homolog, m 74.9 15 0.00052 24.1 8.4 48 49-97 60-111 (164)
56 3tsm_A IGPS, indole-3-glycerol 74.2 16 0.00054 28.2 8.0 68 38-108 131-199 (272)
57 2ioj_A Hypothetical protein AF 72.7 6.3 0.00021 26.7 4.9 53 35-90 56-112 (139)
58 2iue_A Pactolus I-domain; memb 72.0 7 0.00024 29.2 5.3 68 50-121 104-210 (212)
59 3dnf_A ISPH, LYTB, 4-hydroxy-3 71.3 15 0.0005 29.0 7.2 72 50-126 209-281 (297)
60 3vi3_B Integrin beta-1; beta p 69.6 19 0.00064 30.1 7.8 102 20-125 210-360 (454)
61 2lqo_A Putative glutaredoxin R 68.4 19 0.00066 22.8 6.2 29 52-82 5-33 (92)
62 3t3p_B Integrin beta-3; integr 67.8 22 0.00074 29.8 7.9 102 20-125 201-353 (472)
63 3nav_A Tryptophan synthase alp 67.4 40 0.0014 25.8 10.1 114 7-123 55-207 (271)
64 2prs_A High-affinity zinc upta 64.5 36 0.0012 25.7 8.1 65 59-125 206-279 (284)
65 3mfq_A TROA, high-affinity zin 63.1 8.6 0.0003 29.4 4.3 25 59-84 195-219 (282)
66 4a29_A Engineered retro-aldol 63.0 19 0.00064 27.8 6.2 72 34-108 111-183 (258)
67 3erw_A Sporulation thiol-disul 61.3 19 0.00065 22.8 5.3 52 45-97 62-114 (145)
68 1pq4_A Periplasmic binding pro 60.7 13 0.00044 28.5 4.9 61 59-125 220-286 (291)
69 1pjq_A CYSG, siroheme synthase 59.2 14 0.00048 30.1 5.2 64 50-117 72-140 (457)
70 3gkn_A Bacterioferritin comigr 59.0 28 0.00096 23.0 6.0 53 40-97 59-112 (163)
71 3gas_A Heme oxygenase; FMN-bin 58.6 6.3 0.00022 30.2 2.8 57 7-63 55-113 (259)
72 2l5o_A Putative thioredoxin; s 57.9 35 0.0012 22.0 9.4 49 46-97 57-106 (153)
73 3u5r_E Uncharacterized protein 57.6 37 0.0013 24.1 6.8 58 40-97 82-143 (218)
74 1ytl_A Acetyl-COA decarboxylas 56.5 14 0.00048 26.5 4.2 49 33-84 19-68 (174)
75 1kyq_A Met8P, siroheme biosynt 56.4 21 0.00072 27.4 5.5 64 50-117 106-178 (274)
76 3drn_A Peroxiredoxin, bacterio 55.6 42 0.0014 22.2 8.0 51 42-97 55-106 (161)
77 1knx_A Probable HPR(Ser) kinas 55.1 11 0.00036 29.8 3.6 40 42-84 75-114 (312)
78 3swj_A CHUZ, putative uncharac 54.6 7.3 0.00025 29.5 2.5 57 7-63 56-113 (251)
79 3qja_A IGPS, indole-3-glycerol 54.3 34 0.0012 26.1 6.4 71 35-108 121-192 (272)
80 2a4v_A Peroxiredoxin DOT5; yea 54.2 44 0.0015 22.0 9.1 80 41-127 60-157 (159)
81 3kcm_A Thioredoxin family prot 53.3 42 0.0014 21.6 7.4 49 46-97 57-106 (154)
82 1jdq_A TM006 protein, hypothet 52.4 26 0.00088 22.7 4.7 40 41-83 42-83 (98)
83 3cf4_G Acetyl-COA decarboxylas 50.9 35 0.0012 23.7 5.6 46 39-84 24-69 (170)
84 2f9s_A Thiol-disulfide oxidore 49.7 49 0.0017 21.3 6.6 48 46-97 55-103 (151)
85 2rli_A SCO2 protein homolog, m 49.5 53 0.0018 21.6 8.9 47 49-96 63-113 (171)
86 3gi1_A LBP, laminin-binding pr 49.4 39 0.0013 25.7 6.0 66 59-125 211-283 (286)
87 3av3_A Phosphoribosylglycinami 49.3 35 0.0012 24.9 5.6 42 39-84 17-60 (212)
88 2wji_A Ferrous iron transport 48.5 19 0.00066 23.9 3.7 42 50-91 81-122 (165)
89 1c7n_A Cystalysin; transferase 48.4 31 0.0011 26.1 5.3 44 39-82 153-202 (399)
90 2l69_A Rossmann 2X3 fold prote 48.3 59 0.002 21.8 8.9 50 54-104 4-56 (134)
91 3vus_A Poly-beta-1,6-N-acetyl- 48.1 54 0.0018 24.6 6.6 64 20-83 31-97 (268)
92 1wn2_A Peptidyl-tRNA hydrolase 48.1 34 0.0012 23.0 4.9 44 40-86 45-88 (121)
93 2i6d_A RNA methyltransferase, 48.0 7.7 0.00026 29.4 1.7 63 35-105 29-91 (257)
94 1d2f_A MALY protein; aminotran 47.1 31 0.0011 26.1 5.1 44 39-82 151-200 (390)
95 3md9_A Hemin-binding periplasm 47.0 77 0.0026 22.7 8.2 53 42-98 51-113 (255)
96 2i4r_A V-type ATP synthase sub 46.9 24 0.00084 23.1 3.9 51 37-88 36-91 (102)
97 1shu_X Anthrax toxin receptor 46.7 62 0.0021 21.6 6.9 84 35-121 84-179 (182)
98 3bzy_B ESCU; auto cleavage pro 45.8 18 0.00061 23.1 3.0 35 55-94 20-54 (83)
99 1ivn_A Thioesterase I; hydrola 45.2 43 0.0015 22.6 5.2 46 39-84 88-140 (190)
100 1toa_A Tromp-1, protein (perip 44.4 72 0.0025 24.6 6.9 66 59-125 229-309 (313)
101 3g0t_A Putative aminotransfera 44.3 35 0.0012 26.2 5.1 43 40-82 172-220 (437)
102 2lnd_A De novo designed protei 43.9 64 0.0022 21.0 6.0 54 37-91 38-93 (112)
103 2b7k_A SCO1 protein; metalloch 43.6 79 0.0027 21.9 6.7 47 49-96 77-127 (200)
104 3ecd_A Serine hydroxymethyltra 43.4 16 0.00053 27.9 2.9 43 39-82 161-205 (425)
105 3qvl_A Putative hydantoin race 43.3 93 0.0032 23.1 7.2 69 10-83 7-97 (245)
106 1rlk_A Hypothetical protein TA 43.1 34 0.0012 22.8 4.3 44 40-86 41-84 (117)
107 3vnd_A TSA, tryptophan synthas 43.0 92 0.0032 23.6 7.2 114 7-122 53-204 (267)
108 3gbx_A Serine hydroxymethyltra 42.8 19 0.00066 27.4 3.3 43 39-82 158-202 (420)
109 3cx3_A Lipoprotein; zinc-bindi 42.8 47 0.0016 25.1 5.5 65 59-125 209-281 (284)
110 1pq4_A Periplasmic binding pro 42.6 35 0.0012 26.0 4.7 42 40-85 227-268 (291)
111 3f7j_A YVGN protein; aldo-keto 42.5 36 0.0012 25.5 4.8 65 19-83 119-189 (276)
112 3h75_A Periplasmic sugar-bindi 42.5 38 0.0013 25.3 4.9 41 42-85 53-94 (350)
113 3t1o_A Gliding protein MGLA; G 42.0 48 0.0016 22.0 5.0 48 76-124 134-191 (198)
114 1t1v_A SH3BGRL3, SH3 domain-bi 42.0 57 0.002 19.8 5.1 29 67-95 22-56 (93)
115 3v4v_B Integrin beta-7; cell a 41.9 57 0.0019 27.5 6.2 101 21-125 222-372 (503)
116 1wik_A Thioredoxin-like protei 41.9 56 0.0019 20.6 5.1 51 42-96 8-69 (109)
117 3lvj_C Sulfurtransferase TUSA; 41.8 40 0.0014 20.8 4.2 39 42-83 27-67 (82)
118 3dzz_A Putative pyridoxal 5'-p 41.4 49 0.0017 24.7 5.4 44 39-82 149-198 (391)
119 3h5n_A MCCB protein; ubiquitin 41.4 27 0.00094 27.5 4.1 34 50-84 208-241 (353)
120 1xzo_A BSSCO, hypothetical pro 41.3 64 0.0022 21.2 5.5 30 50-80 69-98 (174)
121 1n3y_A Integrin alpha-X; alpha 40.5 49 0.0017 22.5 5.0 74 49-124 109-194 (198)
122 3cwq_A Para family chromosome 40.5 27 0.00093 24.7 3.6 85 39-126 108-202 (209)
123 3o0k_A Aldo/keto reductase; ss 40.4 45 0.0015 25.2 5.1 65 19-83 140-210 (283)
124 2ywi_A Hypothetical conserved 40.2 83 0.0028 21.2 6.6 52 46-97 75-130 (196)
125 3k6s_B Integrin beta-2; cell r 40.1 14 0.00046 32.3 2.2 101 20-124 193-342 (687)
126 3hh1_A Tetrapyrrole methylase 40.0 71 0.0024 20.7 5.5 43 42-84 72-115 (117)
127 3psh_A Protein HI_1472; substr 39.9 73 0.0025 23.8 6.2 53 42-99 76-157 (326)
128 4e38_A Keto-hydroxyglutarate-a 39.8 33 0.0011 25.8 4.1 74 39-121 96-170 (232)
129 3vqt_A RF-3, peptide chain rel 39.7 51 0.0017 27.5 5.7 46 40-86 115-161 (548)
130 2cvb_A Probable thiol-disulfid 39.7 84 0.0029 21.1 6.3 47 51-97 66-116 (188)
131 1jkx_A GART;, phosphoribosylgl 39.5 50 0.0017 24.2 5.0 42 39-84 14-57 (212)
132 1xty_A PTH, peptidyl-tRNA hydr 39.4 48 0.0016 22.2 4.6 43 41-86 45-87 (120)
133 1svv_A Threonine aldolase; str 39.1 49 0.0017 24.3 5.0 46 39-84 128-184 (359)
134 1xvl_A Mn transporter, MNTC pr 38.8 91 0.0031 24.1 6.7 66 59-125 236-311 (321)
135 3grc_A Sensor protein, kinase; 38.7 70 0.0024 19.9 9.1 82 36-118 36-123 (140)
136 3n2n_F Anthrax toxin receptor 38.7 72 0.0025 21.3 5.5 64 35-98 85-162 (185)
137 3qel_B Glutamate [NMDA] recept 38.7 47 0.0016 25.6 5.0 47 38-84 51-97 (364)
138 3b3e_A YVGN protein; aldo-keto 38.4 44 0.0015 25.7 4.8 66 19-84 153-224 (310)
139 3ixr_A Bacterioferritin comigr 37.9 90 0.0031 21.2 6.0 52 40-96 75-127 (179)
140 1zud_1 Adenylyltransferase THI 37.8 34 0.0012 25.4 4.0 33 50-84 118-150 (251)
141 3gi1_A LBP, laminin-binding pr 37.5 53 0.0018 24.9 5.1 42 39-84 217-258 (286)
142 3zy2_A Putative GDP-fucose pro 37.4 32 0.0011 27.9 3.8 73 43-121 272-345 (362)
143 1zgd_A Chalcone reductase; pol 36.9 50 0.0017 25.1 4.9 65 20-84 145-215 (312)
144 2dqw_A Dihydropteroate synthas 36.5 1.2E+02 0.0042 23.4 7.1 78 3-85 73-154 (294)
145 1y8q_A Ubiquitin-like 1 activa 36.4 27 0.00094 27.4 3.3 35 50-86 125-159 (346)
146 1qwk_A Aldose reductase, aldo- 36.3 57 0.0019 24.9 5.1 65 20-84 132-202 (317)
147 2d00_A V-type ATP synthase sub 35.8 87 0.003 20.5 5.3 38 49-87 45-83 (109)
148 3h7u_A Aldo-keto reductase; st 35.7 42 0.0014 26.0 4.3 65 20-84 157-227 (335)
149 3ipz_A Monothiol glutaredoxin- 35.7 54 0.0018 20.8 4.2 49 43-96 12-72 (109)
150 2vt1_B Surface presentation of 35.6 24 0.00081 23.0 2.4 36 55-95 20-55 (93)
151 3cx3_A Lipoprotein; zinc-bindi 35.4 47 0.0016 25.1 4.5 43 40-86 216-258 (284)
152 3krb_A Aldose reductase; ssgci 35.3 45 0.0015 25.7 4.4 64 20-83 155-224 (334)
153 1mi3_A Xylose reductase, XR; a 35.1 56 0.0019 24.9 4.9 65 20-84 148-218 (322)
154 3up8_A Putative 2,5-diketo-D-g 34.9 72 0.0025 24.3 5.5 65 20-84 137-207 (298)
155 3kkq_A RAS-related protein M-R 34.8 72 0.0025 21.0 5.0 21 69-89 115-135 (183)
156 1ax4_A Tryptophanase; tryptoph 34.5 60 0.0021 25.2 5.1 44 40-83 170-223 (467)
157 1tp9_A Peroxiredoxin, PRX D (t 34.5 1E+02 0.0034 20.5 6.8 50 42-96 62-115 (162)
158 3rjt_A Lipolytic protein G-D-S 34.5 27 0.00091 23.7 2.7 48 37-84 117-175 (216)
159 3jy6_A Transcriptional regulat 34.4 99 0.0034 22.0 6.0 66 15-85 18-93 (276)
160 1vbj_A Prostaglandin F synthas 34.3 59 0.002 24.4 4.9 65 20-84 123-193 (281)
161 3l6u_A ABC-type sugar transpor 34.3 87 0.003 22.3 5.6 69 14-85 18-97 (293)
162 3zyw_A Glutaredoxin-3; metal b 34.2 70 0.0024 20.5 4.6 36 58-96 29-70 (111)
163 3qq5_A Small GTP-binding prote 34.2 46 0.0016 26.9 4.4 48 41-90 106-153 (423)
164 8abp_A L-arabinose-binding pro 34.1 73 0.0025 22.9 5.2 40 43-85 50-90 (306)
165 2l2q_A PTS system, cellobiose- 34.1 48 0.0016 21.4 3.8 45 37-85 40-84 (109)
166 2wzm_A Aldo-keto reductase; ox 34.0 65 0.0022 24.2 5.1 64 20-83 126-195 (283)
167 3ib7_A ICC protein; metallopho 34.0 58 0.002 23.9 4.7 46 39-84 53-107 (330)
168 2gzm_A Glutamate racemase; enz 34.0 63 0.0021 24.1 4.9 41 40-83 55-95 (267)
169 2o1e_A YCDH; alpha-beta protei 34.0 66 0.0023 24.7 5.1 25 59-84 222-246 (312)
170 3gbv_A Putative LACI-family tr 33.9 72 0.0025 22.8 5.1 42 42-85 61-102 (304)
171 3ist_A Glutamate racemase; str 33.9 74 0.0025 24.1 5.3 39 42-83 59-97 (269)
172 2ywr_A Phosphoribosylglycinami 33.6 70 0.0024 23.3 5.0 42 39-84 15-58 (216)
173 3h7r_A Aldo-keto reductase; st 33.6 47 0.0016 25.7 4.3 64 20-83 153-222 (331)
174 3hp4_A GDSL-esterase; psychrot 33.5 70 0.0024 21.2 4.7 46 40-85 93-145 (185)
175 3qmx_A Glutaredoxin A, glutare 33.4 53 0.0018 20.6 3.9 27 54-83 20-46 (99)
176 1xvw_A Hypothetical protein RV 33.2 42 0.0014 21.9 3.5 43 49-96 69-114 (160)
177 1uf3_A Hypothetical protein TT 33.2 65 0.0022 22.1 4.7 44 41-84 23-70 (228)
178 2dyk_A GTP-binding protein; GT 33.2 29 0.00099 22.3 2.6 26 65-90 96-121 (161)
179 2wem_A Glutaredoxin-related pr 33.2 76 0.0026 20.8 4.7 52 40-96 11-75 (118)
180 3nra_A Aspartate aminotransfer 33.0 57 0.0019 24.6 4.6 43 39-82 169-217 (407)
181 1svi_A GTP-binding protein YSX 33.0 1.1E+02 0.0037 20.3 7.7 56 68-123 125-193 (195)
182 3eyt_A Uncharacterized protein 32.9 98 0.0034 19.8 6.2 49 49-97 61-117 (158)
183 4f40_A Prostaglandin F2-alpha 32.8 65 0.0022 24.2 4.9 65 20-84 132-202 (288)
184 3l8a_A METC, putative aminotra 32.6 62 0.0021 24.9 4.8 44 39-82 183-232 (421)
185 1zuw_A Glutamate racemase 1; ( 32.6 62 0.0021 24.3 4.7 41 40-83 55-96 (272)
186 3cwc_A Putative glycerate kina 32.4 40 0.0014 27.4 3.7 52 33-84 266-326 (383)
187 2wci_A Glutaredoxin-4; redox-a 32.3 79 0.0027 21.3 4.8 52 40-96 26-89 (135)
188 1q7s_A BIT1, protein CGI-147; 32.1 46 0.0016 22.2 3.5 43 40-85 41-83 (117)
189 3fw2_A Thiol-disulfide oxidore 32.1 1E+02 0.0035 19.7 10.3 52 49-104 68-123 (150)
190 3t5g_A GTP-binding protein RHE 32.0 52 0.0018 21.7 3.8 54 71-124 105-168 (181)
191 1o69_A Aminotransferase; struc 32.0 39 0.0013 25.9 3.5 44 39-82 109-154 (394)
192 2bgs_A Aldose reductase; holoe 31.8 60 0.002 25.3 4.6 65 20-84 169-239 (344)
193 3iby_A Ferrous iron transport 31.7 99 0.0034 22.7 5.7 44 49-92 82-125 (256)
194 3buv_A 3-OXO-5-beta-steroid 4- 31.6 69 0.0024 24.5 4.9 65 20-84 148-220 (326)
195 2oqx_A Tryptophanase; lyase, p 31.5 70 0.0024 24.8 5.0 44 40-83 170-223 (467)
196 1vhx_A Putative holliday junct 31.4 1.1E+02 0.0038 21.0 5.5 48 37-84 42-97 (150)
197 3hh8_A Metal ABC transporter s 31.3 46 0.0016 25.4 3.8 63 59-124 215-289 (294)
198 3ksm_A ABC-type sugar transpor 31.3 91 0.0031 21.9 5.3 39 44-85 53-92 (276)
199 3l49_A ABC sugar (ribose) tran 31.3 74 0.0025 22.7 4.8 69 15-85 16-94 (291)
200 3piu_A 1-aminocyclopropane-1-c 31.0 77 0.0026 24.4 5.1 43 40-82 176-229 (435)
201 1tjy_A Sugar transport protein 31.0 78 0.0027 23.3 5.0 39 43-84 53-92 (316)
202 1pav_A Hypothetical protein TA 30.8 19 0.00065 21.9 1.2 39 41-82 22-62 (78)
203 3ln3_A Dihydrodiol dehydrogena 30.8 66 0.0023 24.5 4.6 64 20-83 146-217 (324)
204 3bvp_A INT, TP901-1 integrase; 30.7 68 0.0023 21.2 4.2 47 38-84 59-109 (138)
205 1v7p_C Integrin alpha-2; snake 30.7 82 0.0028 21.6 4.8 89 35-125 86-197 (200)
206 2oho_A Glutamate racemase; iso 30.5 78 0.0027 23.7 4.9 40 41-83 65-104 (273)
207 2vi8_A Serine hydroxymethyltra 30.5 32 0.0011 26.0 2.8 44 39-82 152-196 (405)
208 4hb7_A Dihydropteroate synthas 30.4 1.1E+02 0.0039 23.5 5.9 78 3-84 51-132 (270)
209 1sff_A 4-aminobutyrate aminotr 30.4 62 0.0021 24.7 4.4 43 40-82 185-238 (426)
210 3b3d_A YTBE protein, putative 30.3 47 0.0016 25.4 3.7 64 21-84 159-228 (314)
211 3kc2_A Uncharacterized protein 30.2 45 0.0015 26.2 3.6 46 34-80 29-74 (352)
212 2prs_A High-affinity zinc upta 30.1 68 0.0023 24.1 4.6 41 40-84 213-253 (284)
213 3c01_E Surface presentation of 30.1 25 0.00086 23.1 1.8 27 65-94 28-54 (98)
214 1hw6_A 2,5-diketo-D-gluconic a 30.0 61 0.0021 24.2 4.3 65 20-84 118-188 (278)
215 1meo_A Phosophoribosylglycinam 30.0 36 0.0012 24.9 2.9 45 35-83 6-56 (209)
216 2o1e_A YCDH; alpha-beta protei 30.0 30 0.001 26.7 2.6 41 40-84 229-269 (312)
217 3p9d_H T-complex protein 1 sub 29.7 75 0.0026 26.7 5.1 44 39-87 284-327 (568)
218 3p9d_A T-complex protein 1 sub 29.6 74 0.0025 26.7 5.1 22 42-63 284-305 (559)
219 3dbi_A Sugar-binding transcrip 29.5 1E+02 0.0036 22.7 5.5 40 42-85 111-151 (338)
220 3m9w_A D-xylose-binding peripl 29.5 96 0.0033 22.5 5.2 42 41-85 49-91 (313)
221 3tb6_A Arabinose metabolism tr 29.4 84 0.0029 22.3 4.8 45 41-85 62-107 (298)
222 1aba_A Glutaredoxin; electron 29.4 92 0.0032 18.5 5.4 17 66-82 17-33 (87)
223 1srv_A Protein (groel (HSP60 c 29.3 99 0.0034 21.8 4.9 18 51-68 54-71 (145)
224 3uhf_A Glutamate racemase; str 29.3 52 0.0018 25.2 3.8 39 42-83 78-116 (274)
225 3a1s_A Iron(II) transport prot 29.2 1.7E+02 0.0057 21.4 7.6 44 49-92 82-125 (258)
226 1iay_A ACC synthase 2, 1-amino 29.2 1E+02 0.0034 23.6 5.5 43 40-82 173-226 (428)
227 1us0_A Aldose reductase; oxido 28.9 82 0.0028 23.9 4.9 65 20-84 139-211 (316)
228 2k6v_A Putative cytochrome C o 28.9 82 0.0028 20.5 4.4 45 50-95 72-120 (172)
229 1mzr_A 2,5-diketo-D-gluconate 28.9 64 0.0022 24.6 4.3 64 20-83 138-207 (296)
230 1qmv_A Human thioredoxin perox 28.9 1.1E+02 0.0037 21.0 5.2 49 43-96 61-117 (197)
231 3auf_A Glycinamide ribonucleot 28.8 92 0.0032 23.0 5.0 42 39-84 36-79 (229)
232 3o3r_A Aldo-keto reductase fam 28.8 86 0.0029 23.8 5.0 64 20-83 139-210 (316)
233 2fn4_A P23, RAS-related protei 28.7 71 0.0024 20.7 4.0 52 73-124 110-171 (181)
234 3dxv_A Alpha-amino-epsilon-cap 28.6 94 0.0032 23.9 5.3 44 39-82 187-240 (439)
235 3ujp_A Mn transporter subunit; 28.6 1.6E+02 0.0055 22.6 6.6 66 59-125 222-297 (307)
236 3t7y_A YOP proteins translocat 28.6 28 0.00095 22.9 1.8 27 65-94 43-69 (97)
237 1toa_A Tromp-1, protein (perip 28.5 87 0.003 24.1 5.0 41 40-81 236-278 (313)
238 1gd9_A Aspartate aminotransfer 28.3 76 0.0026 23.8 4.6 42 40-82 151-198 (389)
239 2jfn_A Glutamate racemase; cel 28.1 1.6E+02 0.0054 22.1 6.4 36 46-84 80-115 (285)
240 3kax_A Aminotransferase, class 28.1 76 0.0026 23.6 4.5 43 39-82 146-194 (383)
241 2etv_A Iron(III) ABC transport 28.0 1.9E+02 0.0064 21.9 6.9 53 42-99 88-154 (346)
242 1v72_A Aldolase; PLP-dependent 28.0 83 0.0028 23.0 4.7 43 40-82 124-178 (356)
243 3hz7_A Uncharacterized protein 28.0 54 0.0018 20.6 3.1 40 42-84 18-60 (87)
244 1je3_A EC005, hypothetical 8.6 28.0 67 0.0023 20.7 3.6 40 41-83 43-84 (97)
245 3g1w_A Sugar ABC transporter; 27.9 1.1E+02 0.0038 21.9 5.3 68 15-85 15-94 (305)
246 3p9x_A Phosphoribosylglycinami 27.8 89 0.0031 23.0 4.7 46 35-84 8-59 (211)
247 1jw9_B Molybdopterin biosynthe 27.7 54 0.0018 24.2 3.6 33 50-84 121-153 (249)
248 2gkg_A Response regulator homo 27.7 1E+02 0.0035 18.4 8.1 63 18-83 17-86 (127)
249 3rot_A ABC sugar transporter, 27.7 98 0.0034 22.3 5.0 41 42-85 53-94 (297)
250 2fvy_A D-galactose-binding per 27.7 1.4E+02 0.0047 21.4 5.8 41 42-85 51-92 (309)
251 1rzw_A Protein AF2095(GR4); be 27.7 37 0.0013 23.1 2.4 43 40-85 38-80 (123)
252 4gac_A Alcohol dehydrogenase [ 27.5 77 0.0026 23.9 4.5 65 20-84 140-210 (324)
253 4dq6_A Putative pyridoxal phos 27.5 88 0.003 23.3 4.8 42 39-82 155-202 (391)
254 4fo5_A Thioredoxin-like protei 27.3 62 0.0021 20.6 3.5 44 50-97 65-113 (143)
255 1pii_A N-(5'phosphoribosyl)ant 27.3 1.3E+02 0.0046 24.7 6.1 69 35-107 117-186 (452)
256 3gx8_A Monothiol glutaredoxin- 27.3 1.1E+02 0.0037 20.0 4.7 33 42-79 9-47 (121)
257 1s1p_A Aldo-keto reductase fam 27.2 82 0.0028 24.1 4.6 65 20-84 145-217 (331)
258 3iyg_B T-complex protein 1 sub 27.2 1.2E+02 0.004 25.1 5.8 38 41-83 264-301 (513)
259 2ct6_A SH3 domain-binding glut 27.2 1.2E+02 0.0042 19.2 4.9 26 68-93 29-60 (111)
260 1n8j_A AHPC, alkyl hydroperoxi 27.1 1.5E+02 0.0051 20.2 6.6 50 42-96 56-110 (186)
261 1kao_A RAP2A; GTP-binding prot 27.1 1.2E+02 0.0042 19.1 6.0 56 69-124 100-165 (167)
262 1ky3_A GTP-binding protein YPT 27.0 1.1E+02 0.0038 19.8 4.8 14 76-89 117-130 (182)
263 4ds3_A Phosphoribosylglycinami 26.9 1.1E+02 0.0037 22.4 5.1 46 35-84 13-64 (209)
264 3lhk_A Putative DNA binding pr 26.9 45 0.0015 22.9 2.8 48 37-85 53-102 (154)
265 3b8x_A WBDK, pyridoxamine 5-ph 26.6 50 0.0017 25.0 3.2 41 40-82 119-160 (390)
266 3iyg_A T-complex protein 1 sub 26.5 1.2E+02 0.0041 25.1 5.8 22 42-63 268-289 (529)
267 3dc7_A Putative uncharacterize 26.5 96 0.0033 21.5 4.6 47 38-84 115-181 (232)
268 1vp5_A 2,5-diketo-D-gluconic a 26.5 86 0.003 23.8 4.6 65 20-84 131-201 (298)
269 3a8u_X Omega-amino acid--pyruv 26.5 77 0.0026 24.6 4.4 44 39-82 205-258 (449)
270 3ruy_A Ornithine aminotransfer 26.5 77 0.0026 23.8 4.3 43 40-83 173-222 (392)
271 1tt5_A APPBP1, amyloid protein 26.5 52 0.0018 27.5 3.6 35 50-86 124-158 (531)
272 3bc8_A O-phosphoseryl-tRNA(SEC 26.4 65 0.0022 26.4 4.1 44 39-82 184-233 (450)
273 3i8s_A Ferrous iron transport 26.4 56 0.0019 24.2 3.5 43 49-91 84-126 (274)
274 2cy8_A D-phgat, D-phenylglycin 26.3 90 0.0031 24.3 4.8 44 39-82 188-240 (453)
275 3n5m_A Adenosylmethionine-8-am 26.3 86 0.0029 24.4 4.6 44 39-82 201-254 (452)
276 1jg8_A L-ALLO-threonine aldola 26.2 78 0.0027 23.2 4.2 44 39-82 116-171 (347)
277 3l44_A Glutamate-1-semialdehyd 26.1 92 0.0031 23.9 4.8 43 40-82 190-241 (434)
278 3keo_A Redox-sensing transcrip 26.0 42 0.0014 24.8 2.6 54 33-89 131-184 (212)
279 3aq1_B Thermosome subunit; gro 25.8 1.2E+02 0.004 25.0 5.5 45 40-89 228-272 (500)
280 2q0q_A ARYL esterase; SGNH hyd 25.8 92 0.0032 21.1 4.3 21 65-85 164-184 (216)
281 3c5c_A RAS-like protein 12; GD 25.8 1.2E+02 0.004 20.4 4.8 48 76-123 126-184 (187)
282 2bgw_A XPF endonuclease; hydro 25.8 1.8E+02 0.0062 20.7 7.3 45 49-93 79-130 (219)
283 2vvt_A Glutamate racemase; iso 25.8 1.3E+02 0.0044 22.7 5.5 41 41-84 77-117 (290)
284 3p3v_A PTS system, N-acetylgal 25.7 1.6E+02 0.0053 20.8 5.5 84 30-117 11-96 (163)
285 2glf_A Probable M18-family ami 25.6 42 0.0014 27.6 2.8 25 59-84 367-391 (450)
286 2khp_A Glutaredoxin; thioredox 25.6 1.1E+02 0.0037 18.0 5.3 29 53-83 8-36 (92)
287 3ff1_A Glucose-6-phosphate iso 25.5 2.3E+02 0.0078 23.3 7.2 99 16-117 59-189 (446)
288 1z7d_A Ornithine aminotransfer 25.5 1.1E+02 0.0039 23.7 5.3 44 39-82 201-251 (433)
289 3o74_A Fructose transport syst 25.4 1.1E+02 0.0038 21.4 4.8 67 15-85 13-90 (272)
290 2wjg_A FEOB, ferrous iron tran 25.4 65 0.0022 21.3 3.4 43 50-92 85-127 (188)
291 3n6r_B Propionyl-COA carboxyla 25.4 49 0.0017 28.0 3.2 33 51-83 338-379 (531)
292 2yan_A Glutaredoxin-3; oxidore 25.4 75 0.0026 19.7 3.5 36 58-96 30-71 (105)
293 3dz8_A RAS-related protein RAB 25.4 62 0.0021 21.8 3.3 14 76-89 127-140 (191)
294 2h3h_A Sugar ABC transporter, 25.3 1.4E+02 0.0047 21.7 5.4 40 43-85 50-90 (313)
295 3uug_A Multiple sugar-binding 25.2 95 0.0032 22.6 4.5 40 43-85 52-92 (330)
296 3p9d_D T-complex protein 1 sub 25.2 1.4E+02 0.0048 24.8 5.9 41 42-87 274-319 (528)
297 2jfq_A Glutamate racemase; cel 24.9 82 0.0028 23.8 4.2 41 41-84 75-115 (286)
298 2dri_A D-ribose-binding protei 24.9 1.7E+02 0.0059 20.6 5.8 40 43-85 50-90 (271)
299 2jfz_A Glutamate racemase; cel 24.8 76 0.0026 23.4 3.9 37 44-83 56-92 (255)
300 4dzz_A Plasmid partitioning pr 24.6 1.4E+02 0.0048 20.1 5.1 62 38-99 113-182 (206)
301 4dsu_A GTPase KRAS, isoform 2B 24.6 1.1E+02 0.0039 19.9 4.5 20 70-89 102-121 (189)
302 1fov_A Glutaredoxin 3, GRX3; a 24.6 1E+02 0.0035 17.5 4.3 16 67-82 15-30 (82)
303 3nbm_A PTS system, lactose-spe 24.6 50 0.0017 21.7 2.6 35 49-85 52-86 (108)
304 2eq5_A 228AA long hypothetical 24.6 1.6E+02 0.0053 20.9 5.5 35 44-83 69-103 (228)
305 1jfu_A Thiol:disulfide interch 24.5 1.6E+02 0.0054 19.5 6.0 52 41-95 84-137 (186)
306 3bzs_A ESCU; auto cleavage pro 24.5 45 0.0015 23.2 2.4 27 65-94 82-108 (137)
307 1ko7_A HPR kinase/phosphatase; 24.4 71 0.0024 25.0 3.8 50 43-95 73-127 (314)
308 3k4h_A Putative transcriptiona 24.3 1.4E+02 0.0049 21.1 5.3 41 40-85 59-100 (292)
309 2epj_A Glutamate-1-semialdehyd 24.3 92 0.0031 24.0 4.5 43 40-82 191-242 (434)
310 2jli_A YSCU, YOP proteins tran 24.3 47 0.0016 22.7 2.4 27 65-94 72-98 (123)
311 3iyg_E T-complex protein 1 sub 24.2 1.6E+02 0.0054 24.3 6.1 22 42-63 266-287 (515)
312 4eu1_A Mitochondrial aspartate 24.2 1.4E+02 0.0048 22.6 5.5 43 40-82 171-221 (409)
313 1i4n_A Indole-3-glycerol phosp 24.2 2.3E+02 0.0078 21.2 8.7 70 35-108 110-181 (251)
314 1tx2_A DHPS, dihydropteroate s 24.1 2.5E+02 0.0084 21.6 8.8 79 3-85 84-167 (297)
315 2h57_A ADP-ribosylation factor 24.1 1E+02 0.0036 20.5 4.3 50 76-125 125-187 (190)
316 2dkj_A Serine hydroxymethyltra 24.0 49 0.0017 24.9 2.8 44 39-82 152-196 (407)
317 3euc_A Histidinol-phosphate am 24.0 67 0.0023 23.9 3.5 44 39-82 146-197 (367)
318 3mwd_B ATP-citrate synthase; A 24.0 82 0.0028 24.8 4.1 40 40-80 94-134 (334)
319 2nxf_A Putative dimetal phosph 23.9 1.9E+02 0.0064 20.7 5.9 50 40-89 41-99 (322)
320 3ztl_A Thioredoxin peroxidase; 23.9 1.9E+02 0.0066 20.3 6.2 55 41-96 94-152 (222)
321 2dwu_A Glutamate racemase; iso 23.9 1.6E+02 0.0056 21.9 5.7 41 40-83 59-99 (276)
322 2oat_A Ornithine aminotransfer 23.8 1.1E+02 0.0039 23.8 5.0 43 40-82 213-262 (439)
323 3i4j_A Aminotransferase, class 23.8 83 0.0028 24.2 4.1 43 40-82 177-230 (430)
324 3fq8_A Glutamate-1-semialdehyd 23.7 1.3E+02 0.0043 23.1 5.1 43 40-82 187-238 (427)
325 3ors_A N5-carboxyaminoimidazol 23.7 57 0.0019 23.4 2.8 39 53-92 7-50 (163)
326 3lou_A Formyltetrahydrofolate 23.7 1.2E+02 0.0039 23.4 4.9 44 35-84 101-150 (292)
327 4gie_A Prostaglandin F synthas 23.7 1.1E+02 0.0036 23.0 4.6 64 21-84 128-197 (290)
328 3isl_A Purine catabolism prote 23.7 51 0.0017 24.9 2.8 44 39-82 125-171 (416)
329 2jlj_A YSCU, YOP proteins tran 23.6 48 0.0016 23.3 2.4 27 65-94 81-107 (144)
330 2zyj_A Alpha-aminodipate amino 23.6 87 0.003 23.6 4.2 44 39-82 151-201 (397)
331 1afs_A 3-alpha-HSD, 3-alpha-hy 23.6 84 0.0029 23.9 4.1 65 20-84 145-217 (323)
332 2wfc_A Peroxiredoxin 5, PRDX5; 23.6 1.7E+02 0.0059 19.7 6.6 46 46-96 62-111 (167)
333 1eye_A DHPS 1, dihydropteroate 23.6 1.8E+02 0.0061 22.2 5.9 79 3-85 50-132 (280)
334 3d02_A Putative LACI-type tran 23.5 1.6E+02 0.0054 21.0 5.4 41 43-85 54-94 (303)
335 3h7f_A Serine hydroxymethyltra 23.5 49 0.0017 26.0 2.8 45 39-83 174-219 (447)
336 3n0l_A Serine hydroxymethyltra 23.3 51 0.0018 24.9 2.8 43 39-82 153-197 (417)
337 3kcq_A Phosphoribosylglycinami 23.3 1.2E+02 0.0041 22.3 4.7 46 35-84 14-65 (215)
338 3nhm_A Response regulator; pro 23.3 1.3E+02 0.0046 18.3 7.4 50 36-85 33-85 (133)
339 3trh_A Phosphoribosylaminoimid 23.2 58 0.002 23.5 2.8 28 53-81 10-37 (169)
340 3lor_A Thiol-disulfide isomera 23.2 1.5E+02 0.0052 18.9 5.9 48 50-97 64-120 (160)
341 3ftb_A Histidinol-phosphate am 23.0 79 0.0027 23.3 3.7 41 40-82 136-182 (361)
342 1a6d_B Thermosome (beta subuni 23.0 1.3E+02 0.0045 25.0 5.4 41 41-86 276-316 (543)
343 3rg8_A Phosphoribosylaminoimid 22.9 48 0.0017 23.7 2.3 31 53-84 6-37 (159)
344 3fdb_A Beta C-S lyase, putativ 22.9 1.4E+02 0.0048 22.0 5.2 43 39-82 140-188 (377)
345 3op7_A Aminotransferase class 22.9 1.1E+02 0.0039 22.6 4.6 42 40-82 145-192 (375)
346 2fn9_A Ribose ABC transporter, 22.7 1.7E+02 0.006 20.7 5.5 69 14-85 12-91 (290)
347 4adb_A Succinylornithine trans 22.7 57 0.002 24.6 2.9 34 49-82 182-222 (406)
348 1y0n_A Hypothetical UPF0270 pr 22.6 67 0.0023 20.3 2.7 21 35-55 36-56 (78)
349 3jtx_A Aminotransferase; NP_28 22.6 57 0.002 24.5 2.9 42 40-82 159-206 (396)
350 2ioy_A Periplasmic sugar-bindi 22.4 1.7E+02 0.0059 20.7 5.4 40 43-85 50-90 (283)
351 2c0d_A Thioredoxin peroxidase 22.4 1.8E+02 0.0063 20.7 5.5 46 45-95 85-138 (221)
352 3dod_A Adenosylmethionine-8-am 22.4 1.3E+02 0.0044 23.4 5.0 43 40-82 198-250 (448)
353 3p94_A GDSL-like lipase; serin 22.3 1.7E+02 0.006 19.3 5.2 46 39-84 103-162 (204)
354 3iav_A Propionyl-COA carboxyla 22.2 62 0.0021 27.3 3.2 32 52-83 333-373 (530)
355 3nl6_A Thiamine biosynthetic b 22.2 1.6E+02 0.0053 24.7 5.7 55 40-96 29-87 (540)
356 1vp4_A Aminotransferase, putat 22.2 1.4E+02 0.0048 22.8 5.1 43 40-82 170-226 (425)
357 3by5_A Cobalamin biosynthesis 22.2 81 0.0028 22.2 3.4 24 67-91 54-77 (155)
358 2zv3_A PTH, peptidyl-tRNA hydr 22.1 82 0.0028 20.8 3.3 42 40-84 39-80 (115)
359 2yvt_A Hypothetical protein AQ 22.1 1.3E+02 0.0043 21.3 4.6 24 39-62 21-44 (260)
360 3tfu_A Adenosylmethionine-8-am 21.9 1.1E+02 0.0037 24.3 4.5 42 40-82 221-273 (457)
361 3n0v_A Formyltetrahydrofolate 21.9 80 0.0027 24.2 3.6 44 35-84 96-145 (286)
362 2o52_A RAS-related protein RAB 21.9 1.3E+02 0.0043 20.4 4.4 15 76-90 129-143 (200)
363 1ujp_A Tryptophan synthase alp 21.9 1.9E+02 0.0063 21.8 5.7 89 7-98 50-169 (271)
364 3lp6_A Phosphoribosylaminoimid 21.8 65 0.0022 23.4 2.8 39 53-92 11-54 (174)
365 1a6d_A Thermosome (alpha subun 21.8 1.1E+02 0.0039 25.4 4.8 23 41-63 275-297 (545)
366 2xgg_A Microneme protein 2; A/ 21.7 1.1E+02 0.0039 20.6 4.1 49 35-83 100-157 (178)
367 3b1s_B Flagellar biosynthetic 27.2 19 0.00066 23.1 0.0 36 54-94 19-54 (87)
368 3out_A Glutamate racemase; str 21.6 75 0.0026 24.0 3.3 40 41-83 60-100 (268)
369 2ywx_A Phosphoribosylaminoimid 21.5 67 0.0023 22.9 2.9 40 53-93 3-47 (157)
370 1vjg_A Putative lipase from th 21.5 81 0.0028 21.6 3.3 46 39-85 119-175 (218)
371 2b9s_B DNA topoisomerase I-lik 21.5 26 0.00091 21.3 0.6 22 70-91 29-50 (62)
372 3ha9_A Uncharacterized thiored 21.5 1.7E+02 0.0059 18.8 5.6 47 50-97 68-130 (165)
373 2obb_A Hypothetical protein; s 21.4 1.6E+02 0.0053 20.1 4.7 47 35-83 25-71 (142)
374 2c78_A Elongation factor TU-A; 21.4 1.1E+02 0.0038 23.9 4.5 48 41-89 91-140 (405)
375 3dfz_A SIRC, precorrin-2 dehyd 21.3 56 0.0019 24.2 2.5 63 50-116 91-157 (223)
376 1z08_A RAS-related protein RAB 21.3 1.2E+02 0.0041 19.4 4.0 48 76-123 110-167 (170)
377 3tqr_A Phosphoribosylglycinami 21.3 2.4E+02 0.0083 20.5 6.9 45 35-83 11-60 (215)
378 1zod_A DGD, 2,2-dialkylglycine 21.3 87 0.003 24.0 3.7 44 39-82 189-242 (433)
379 3eag_A UDP-N-acetylmuramate:L- 21.3 2.7E+02 0.0092 21.0 7.5 65 50-121 66-131 (326)
380 2oil_A CATX-8, RAS-related pro 21.2 1.4E+02 0.0048 19.8 4.5 49 76-124 129-187 (193)
381 2gfq_A UPF0204 protein PH0006; 21.2 1.4E+02 0.0049 23.3 4.9 45 41-85 252-298 (298)
382 3h8v_A Ubiquitin-like modifier 21.2 73 0.0025 24.6 3.2 34 49-84 136-169 (292)
383 2w6k_A COBE; biosynthetic prot 21.2 59 0.002 22.5 2.5 25 67-92 58-82 (145)
384 3snk_A Response regulator CHEY 21.1 1.5E+02 0.0052 18.2 4.4 42 54-97 17-59 (135)
385 3aow_A Putative uncharacterize 21.1 1.4E+02 0.0049 23.3 5.1 43 40-82 201-255 (448)
386 1xvl_A Mn transporter, MNTC pr 21.1 1.2E+02 0.0041 23.4 4.5 38 40-81 243-280 (321)
387 2glj_A Probable M18-family ami 21.1 58 0.002 26.8 2.8 23 59-82 379-401 (461)
388 1xmp_A PURE, phosphoribosylami 21.0 69 0.0024 23.2 2.9 40 53-93 15-59 (170)
389 3ceu_A Thiamine phosphate pyro 21.0 1.2E+02 0.0042 21.4 4.3 37 58-95 35-71 (210)
390 3hh8_A Metal ABC transporter s 20.9 1.1E+02 0.0038 23.2 4.3 39 39-81 221-259 (294)
391 3zrp_A Serine-pyruvate aminotr 20.9 64 0.0022 23.9 2.8 44 39-82 116-162 (384)
392 3kuu_A Phosphoribosylaminoimid 20.9 70 0.0024 23.2 2.9 39 53-92 16-59 (174)
393 2ez2_A Beta-tyrosinase, tyrosi 20.9 1.7E+02 0.0059 22.5 5.4 43 40-82 161-213 (456)
394 2x7j_A 2-succinyl-5-enolpyruvy 20.8 1.5E+02 0.005 24.7 5.2 43 40-83 234-276 (604)
395 3lab_A Putative KDPG (2-keto-3 20.7 72 0.0025 23.7 3.0 74 39-121 75-155 (217)
396 3qpm_A Peroxiredoxin; oxidored 20.7 2.4E+02 0.0083 20.3 6.3 52 40-96 101-160 (240)
397 2q8u_A Exonuclease, putative; 20.7 1E+02 0.0035 23.2 4.0 43 40-84 51-103 (336)
398 3da8_A Probable 5'-phosphoribo 20.7 1.6E+02 0.0055 21.5 4.9 45 35-84 18-67 (215)
399 2xfr_A Beta-amylase; hydrolase 20.6 1.5E+02 0.0051 25.2 5.2 46 36-81 320-376 (535)
400 4b4k_A N5-carboxyaminoimidazol 20.4 72 0.0025 23.3 2.9 31 53-84 26-57 (181)
401 3nnk_A Ureidoglycine-glyoxylat 20.4 49 0.0017 24.9 2.1 44 39-82 127-173 (411)
402 2f7s_A C25KG, RAS-related prot 20.4 1.2E+02 0.004 20.7 4.0 14 76-89 140-153 (217)
403 3td9_A Branched chain amino ac 20.4 1.2E+02 0.0043 22.3 4.4 43 39-84 70-112 (366)
404 3tr5_A RF-3, peptide chain rel 20.4 83 0.0028 26.1 3.6 50 40-89 97-146 (528)
405 3av0_A DNA double-strand break 20.3 1.2E+02 0.0039 23.6 4.3 48 39-86 49-104 (386)
406 3qk7_A Transcriptional regulat 20.3 1.8E+02 0.006 20.9 5.1 63 18-85 24-96 (294)
407 1u08_A Hypothetical aminotrans 20.3 1.7E+02 0.0057 21.8 5.1 42 40-82 154-201 (386)
408 3pqc_A Probable GTP-binding pr 20.3 1.9E+02 0.0065 18.9 7.0 75 50-124 104-193 (195)
409 3gju_A Putative aminotransfera 20.3 1.4E+02 0.0049 23.3 4.9 43 40-82 208-260 (460)
410 4hwg_A UDP-N-acetylglucosamine 20.2 1.2E+02 0.0042 23.7 4.5 43 38-84 82-124 (385)
411 2atv_A RERG, RAS-like estrogen 20.2 2E+02 0.0069 19.1 6.5 23 69-91 124-146 (196)
412 3ke3_A Putative serine-pyruvat 20.2 95 0.0032 23.5 3.7 45 39-83 124-174 (379)
413 1prx_A HORF6; peroxiredoxin, h 20.2 2.4E+02 0.0083 20.0 7.7 53 42-95 57-116 (224)
414 2f9i_B Acetyl-coenzyme A carbo 20.1 1.4E+02 0.0047 22.9 4.6 34 51-84 121-163 (285)
415 1mio_B Nitrogenase molybdenum 20.1 70 0.0024 25.8 3.1 39 47-85 93-139 (458)
416 2e7j_A SEP-tRNA:Cys-tRNA synth 20.1 1.9E+02 0.0065 21.2 5.4 44 39-82 132-182 (371)
417 2zc0_A Alanine glyoxylate tran 20.1 1.7E+02 0.0056 22.0 5.1 43 40-82 159-213 (407)
418 2q8p_A Iron-regulated surface 20.1 2.4E+02 0.0082 20.0 7.0 53 42-99 52-113 (260)
419 2a7v_A Serine hydroxymethyltra 20.0 83 0.0028 25.8 3.5 45 38-82 191-236 (490)
420 3qi7_A Putative transcriptiona 20.0 1.9E+02 0.0064 23.2 5.5 48 36-83 142-194 (371)
421 2x5d_A Probable aminotransfera 20.0 73 0.0025 24.3 3.0 34 49-82 171-210 (412)
No 1
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=100.00 E-value=2.4e-38 Score=230.77 Aligned_cols=128 Identities=79% Similarity=1.159 Sum_probs=124.7
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCE
Q 033058 1 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 1 ~~~~~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
|+..+++|+|+|+++.+++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|.+++++++.+|++++|||
T Consensus 17 ~~~~~~~~~a~Pla~~~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~ 96 (144)
T 2jnb_A 17 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPY 96 (144)
T ss_dssp CCCSCCCCCSSSBCCHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCC
T ss_pred hccccCCcccCCCCCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCE
Confidence 67789999999999999999999999999999999999999999999999999999999999779999999999999999
Q ss_pred EEeCCHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhhhC
Q 033058 81 VFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 128 (128)
Q Consensus 81 ~~~~sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~~~ 128 (128)
++++|+.+||+|||+++++++++|+++++++|.++++++++.|+.||+
T Consensus 97 ~~v~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~~l~~ 144 (144)
T 2jnb_A 97 VFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 144 (144)
T ss_dssp EEESCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999986
No 2
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=100.00 E-value=4.9e-37 Score=221.44 Aligned_cols=124 Identities=78% Similarity=1.129 Sum_probs=119.9
Q ss_pred CCCccccCCCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 5 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 5 ~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++|+++|+++++++++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++++++.+|+++||||++++
T Consensus 3 ~~~~~a~p~a~~~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~ 82 (134)
T 2ale_A 3 APNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVP 82 (134)
T ss_dssp CCCTTCCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEES
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999997799999999999999999999
Q ss_pred CHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhhhC
Q 033058 85 SKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 128 (128)
Q Consensus 85 sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~~~ 128 (128)
|+.+||+|||+++++++++|+|+++++|.++++++++++.+|++
T Consensus 83 sk~eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~~~ 126 (134)
T 2ale_A 83 SRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126 (134)
T ss_dssp CHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999889999999999999999999999998863
No 3
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=100.00 E-value=1.8e-36 Score=218.46 Aligned_cols=128 Identities=65% Similarity=1.019 Sum_probs=112.4
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCE
Q 033058 1 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 1 ~~~~~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
|+++.++|+++|+++.+++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|.+..++++.+|++++|||
T Consensus 8 m~~~~~~~~a~p~~~~~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~ 87 (135)
T 2aif_A 8 SEDTGFNPKAFPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPY 87 (135)
T ss_dssp ----------CCBCCSHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCE
T ss_pred ccccCCCccccccccHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcE
Confidence 66677899999999999999999999999999999999999999999999999999999999855699999999999999
Q ss_pred EEeCCHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhhhC
Q 033058 81 VFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 128 (128)
Q Consensus 81 ~~~~sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~~~ 128 (128)
++++|+.+||+|||+++++++++|++++++++.++++++++.|+.||+
T Consensus 88 ~~v~sk~eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~~~~~~ 135 (135)
T 2aif_A 88 VFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQIEQILV 135 (135)
T ss_dssp EEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTTCC---
T ss_pred EEECCHHHHHHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999989999999999999999999999999986
No 4
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=100.00 E-value=4.7e-36 Score=213.10 Aligned_cols=120 Identities=46% Similarity=0.855 Sum_probs=115.5
Q ss_pred CCccccCCCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 6 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 6 ~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++|+++|+++++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|.++.++++.+|++++|||++++|
T Consensus 3 ~~~~a~p~a~~~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s 82 (122)
T 3o85_A 3 IDPRAIPFANEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGS 82 (122)
T ss_dssp CCTTSCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999986689999999999999999999
Q ss_pred HHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhhh
Q 033058 86 KQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLL 127 (128)
Q Consensus 86 k~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~~ 127 (128)
+.+||+|||+++++++++|+|+++ +.+.++++++.|+.|.
T Consensus 83 k~eLG~a~Gk~~~vs~vaI~d~~~--~~~~~~~~~~~i~~~~ 122 (122)
T 3o85_A 83 KNALGRACNVSVPTIVASIGKHDA--LGNVVAEIVGKVEALV 122 (122)
T ss_dssp HHHHHHHTTCSSCCSEEEECCCTT--THHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCEEEEEEEcccc--hHHHHHHHHHHHHhhC
Confidence 999999999999999999999876 8999999999999863
No 5
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.97 E-value=4e-30 Score=182.09 Aligned_cols=112 Identities=31% Similarity=0.602 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 15 DSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 15 ~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+++++++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++++++.+|++++|||++++|+.+||+|||
T Consensus 1 ~~~l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g 80 (121)
T 2lbw_A 1 SKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999976899999999999999999999999999999
Q ss_pred CCCceEEEEEecCCc---------hHHHHHHHHHHHHHhhh
Q 033058 95 VTRPVIACSVTSNEA---------SQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 95 ~~~~~~~v~i~~~~~---------~~~~~li~~i~~~~~~~ 126 (128)
+++++++++|+|++. .+|.+.++++...|.+|
T Consensus 81 ~k~~~s~v~I~d~g~a~~~~~~~~~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 81 TKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 121 (121)
T ss_dssp CSSCCSEEEECCSCTTGGGCSSTHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 998888899987632 56999999999998875
No 6
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.96 E-value=2.6e-29 Score=177.38 Aligned_cols=117 Identities=32% Similarity=0.580 Sum_probs=103.7
Q ss_pred ccccC-CCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 8 PKAYP-LADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 8 p~~~P-~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
|++-| -.+++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+++.++++.+|++++|||++++|+
T Consensus 2 ~~~v~~~~p~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk 81 (120)
T 1vq8_F 2 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQ 81 (120)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCH
Confidence 44443 35679999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 87 QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 87 ~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
.+||+|||+++++++++|+|.+.+ .++++.+.+.|.+|
T Consensus 82 ~eLG~a~G~~~~~~~vaI~d~g~a--~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 82 DDLGHAAGLEVGSAAAAVTDAGEA--DADVEDIADKVEEL 119 (120)
T ss_dssp HHHHHHTTCSSCCSEEEESSCSSC--HHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEEEecCchH--HHHHHHHHHHHHhc
Confidence 999999999988889999987654 45577777777665
No 7
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.96 E-value=6.4e-29 Score=176.35 Aligned_cols=117 Identities=32% Similarity=0.641 Sum_probs=101.3
Q ss_pred ccccC-CCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 8 PKAYP-LADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 8 p~~~P-~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
|+|-| -.+++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|++++++++.+|++++|||++++|+
T Consensus 1 ~~~v~~~~p~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk 80 (124)
T 2fc3_A 1 PIYVRFEVPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSK 80 (124)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCH
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 34333 35689999999999999999999999999999999999999999999999867999999999999999999999
Q ss_pred HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 87 QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 87 ~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
.+||+|||+++++++++|+|.+.+ .++++.+.+.+.+|
T Consensus 81 ~eLG~a~G~~~~~~~vaI~d~g~a--~~~~~~l~~~~~~l 118 (124)
T 2fc3_A 81 KRLGEAAGIEVAAASVAIIEPGDA--ETLVREIVEKVKEL 118 (124)
T ss_dssp HHHHHHTTCSSCCSEEEEEECGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEECcchH--HHHHHHHHHHHHHh
Confidence 999999999988889999987543 34455566555544
No 8
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.96 E-value=9.2e-29 Score=174.33 Aligned_cols=111 Identities=35% Similarity=0.664 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 14 ADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 14 ~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
.+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|.++.++++.+|++++|||++++|+.+||+||
T Consensus 7 ~p~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~ 86 (119)
T 1rlg_A 7 VPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAV 86 (119)
T ss_dssp CCSHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999997579999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 94 GVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 94 G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
|+++++++++|+|++.++ .+++.+.+.+.+|
T Consensus 87 G~~~~~~~vaI~d~g~a~--~~~~~l~~~~~~l 117 (119)
T 1rlg_A 87 GIEVPCASAAIINEGELR--KELGSLVEKIKGL 117 (119)
T ss_dssp TCSSCCSEEEEEECGGGH--HHHHHHHHHHHTT
T ss_pred CCCCCeEEEEEecCchHH--HHHHHHHHHHHHh
Confidence 999888899999876553 5677777777665
No 9
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.95 E-value=1.4e-28 Score=170.24 Aligned_cols=96 Identities=22% Similarity=0.190 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHh
Q 033058 15 DSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRAC 93 (128)
Q Consensus 15 ~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~ 93 (128)
+....++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|++++|||+ +++|+.|||+||
T Consensus 3 ~~k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~ 81 (105)
T 3u5e_c 3 PVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVL-RKSELEYYAMLSKTKVYYFQGGNNELGTAV 81 (105)
T ss_dssp ------CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHHh
Confidence 4467789999999999999999999999999999999999999999997 99999999999999999 789999999999
Q ss_pred CCCCceEEEEEecCCchH
Q 033058 94 GVTRPVIACSVTSNEASQ 111 (128)
Q Consensus 94 G~~~~~~~v~i~~~~~~~ 111 (128)
|+++++++++|+|++.++
T Consensus 82 Gk~~~~~~vaI~D~G~a~ 99 (105)
T 3u5e_c 82 GKLFRVGVVSILEAGDSD 99 (105)
T ss_dssp TCSSCCSEEEEEECCSCC
T ss_pred CCcccEEEEEEeccchHH
Confidence 999999899999977654
No 10
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.95 E-value=1.7e-28 Score=169.44 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHH
Q 033058 14 ADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRA 92 (128)
Q Consensus 14 ~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a 92 (128)
..++..++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|++++|||+ |++|+.|||+|
T Consensus 2 ~~~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a 80 (104)
T 4a18_G 2 VKKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTA 80 (104)
T ss_dssp ------CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHH
Confidence 34667889999999999999999999999999999999999999999998 89999999999999999 69999999999
Q ss_pred hCCCCceEEEEEecCCchHH
Q 033058 93 CGVTRPVIACSVTSNEASQL 112 (128)
Q Consensus 93 ~G~~~~~~~v~i~~~~~~~~ 112 (128)
||+++++++++|+|++.++.
T Consensus 81 ~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 81 CGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp TTCSSCCSEEEEEECSSCGG
T ss_pred hCCccCEEEEEEeccchHHH
Confidence 99999998999999876553
No 11
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.95 E-value=6.9e-28 Score=168.88 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCC
Q 033058 18 LTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVT 96 (128)
Q Consensus 18 ~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~ 96 (128)
-.++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++|+.+|+.++|||+++ +|+.|||+|||++
T Consensus 10 ~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~-~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~ 88 (112)
T 3iz5_f 10 SGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPL-RKSEIETYAMLAKISVHHFHGNNVDLGTACGKY 88 (112)
T ss_dssp GGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHH-HHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCc
Confidence 3477999999999999999999999999999999999999999997 9999999999999999999 9999999999999
Q ss_pred CceEEEEEecCCchHHHH
Q 033058 97 RPVIACSVTSNEASQLKT 114 (128)
Q Consensus 97 ~~~~~v~i~~~~~~~~~~ 114 (128)
+++++++|+|++.++...
T Consensus 89 ~~v~~vaI~D~G~a~~l~ 106 (112)
T 3iz5_f 89 YRVCCLSILDPGDSDIIS 106 (112)
T ss_dssp CSSCEEEEECCSCCSHHH
T ss_pred cceEEEEEeccchHHHHH
Confidence 999899999987665543
No 12
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.95 E-value=3.2e-27 Score=162.22 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCc
Q 033058 19 TITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98 (128)
Q Consensus 19 ~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~ 98 (128)
+++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|++++|||++++|+.|||+|||++.+
T Consensus 4 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~ 82 (101)
T 3v7q_A 4 GMEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEAR 82 (101)
T ss_dssp CCTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSCC
T ss_pred cchhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhhhCccce
Confidence 467999999999999999999999999999999999999999998 9999999999999999999999999999999977
Q ss_pred eEEEEEecCCchHHHHHHHH
Q 033058 99 VIACSVTSNEASQLKTQIQQ 118 (128)
Q Consensus 99 ~~~v~i~~~~~~~~~~li~~ 118 (128)
+ +++|+| +.|.+.+.+
T Consensus 83 ~-~~ai~D---~g~a~~i~~ 98 (101)
T 3v7q_A 83 V-VVAVTD---QGFANKLIS 98 (101)
T ss_dssp S-EEEECC---HHHHHHHHH
T ss_pred E-EEEEec---cHHHHHHHH
Confidence 5 589988 566655544
No 13
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.94 E-value=5e-27 Score=161.09 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCce
Q 033058 20 ITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPV 99 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~ 99 (128)
++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|++++|||++++|+.|||+|||++.++
T Consensus 4 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~ 82 (101)
T 3on1_A 4 AKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKHERV 82 (101)
T ss_dssp CHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeE
Confidence 68999999999999999999999999999999999999999997 89999999999999999999999999999999665
Q ss_pred EEEEEecCCchHHHHHHHH
Q 033058 100 IACSVTSNEASQLKTQIQQ 118 (128)
Q Consensus 100 ~~v~i~~~~~~~~~~li~~ 118 (128)
+++|+| ..|.+.+.+
T Consensus 83 -~vai~d---~g~a~~i~~ 97 (101)
T 3on1_A 83 -VIGVKD---AGFSRKLAA 97 (101)
T ss_dssp -EEEECC---HHHHHHHHH
T ss_pred -EEEEEC---ccHHHHHHH
Confidence 689988 556555544
No 14
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.7e-27 Score=164.83 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHh
Q 033058 15 DSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRAC 93 (128)
Q Consensus 15 ~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~ 93 (128)
....+++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++++ ++++++.+|++++|||+.+ +|+.+||+||
T Consensus 2 ~~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~ 80 (110)
T 3cpq_A 2 RRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKD-LEEDVKYYAKLSNIPVYQHKITSLELGAVC 80 (110)
T ss_dssp -----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHH-HHHHHHHHHHHTTCCEEECCSCHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEEcCCHHHHHHHh
Confidence 3456688999999999999999999999999999999999999999665 9999999999999998887 9999999999
Q ss_pred CCCCceEEEEEecCCchHHHHHHH
Q 033058 94 GVTRPVIACSVTSNEASQLKTQIQ 117 (128)
Q Consensus 94 G~~~~~~~v~i~~~~~~~~~~li~ 117 (128)
|+++++++++|+|++.+++.++++
T Consensus 81 G~~~~~s~vaI~d~g~a~i~~~~~ 104 (110)
T 3cpq_A 81 GKPFPVAALLVLDEGLSNIMELVE 104 (110)
T ss_dssp TCSSCCSEEEEEECTTCCHHHHHH
T ss_pred CCccceEEEEEecCCHHHHHHHhh
Confidence 999998889999887666766654
No 15
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.94 E-value=2.7e-27 Score=167.27 Aligned_cols=107 Identities=35% Similarity=0.674 Sum_probs=93.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 14 ADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 14 ~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
++++++++++++|++| |+++.|.++|+++|++|+++|||+|+|++|+++.++++.+|++++|||++++|+.+||+||
T Consensus 12 ~p~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 88 (120)
T 1xbi_A 12 VPEEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAA 88 (120)
T ss_dssp CCHHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 4589999999999999 9999999999999999999999999999998679999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 94 GVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 94 G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
|+++++++++|+|.+.++ .+.++.+.+.+|
T Consensus 89 G~~~~~s~vaI~d~g~a~---~l~~l~~~i~~l 118 (120)
T 1xbi_A 89 GLEVAASSVAIINEGDAE---ELKVLIEKVNVL 118 (120)
T ss_dssp TCSSCCSEEEEEECSCHH---HHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeccchHH---HHHHHHHHHHHh
Confidence 999888899999866432 244455544443
No 16
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.94 E-value=8.1e-27 Score=159.52 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCCCceE
Q 033058 22 ILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPVI 100 (128)
Q Consensus 22 i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~~ 100 (128)
+.+.|++|+++|+++.|.++|+++|++|+++|||+|+|++++ ++++++.+|++++||++.+ +|++|||+|||++++++
T Consensus 3 i~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~ 81 (99)
T 3j21_Z 3 LAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKE-IKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVA 81 (99)
T ss_dssp HHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHH-HHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSE
T ss_pred HHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEE
Confidence 678999999999999999999999999999999999999886 9999999999999998665 99999999999999999
Q ss_pred EEEEecCCchHHHHHH
Q 033058 101 ACSVTSNEASQLKTQI 116 (128)
Q Consensus 101 ~v~i~~~~~~~~~~li 116 (128)
+++|+|++.++..+++
T Consensus 82 ~vaI~d~g~a~~l~~~ 97 (99)
T 3j21_Z 82 SLAIVDPGESKILAIA 97 (99)
T ss_dssp EEEESSCSSCSHHHHH
T ss_pred EEEEEccchHHHHHhh
Confidence 9999998877766554
No 17
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.94 E-value=7.7e-27 Score=160.05 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCCCce
Q 033058 21 TILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPV 99 (128)
Q Consensus 21 ~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~ 99 (128)
.++++|++|+++|+++.|.++|+++|++|+++|||+|+|++++ ++++++.+|++++|||+.+ +|+.+||+|||+++++
T Consensus 3 ~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~ 81 (101)
T 1w41_A 3 DFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPD-IKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTV 81 (101)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCC
T ss_pred hHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcE
Confidence 4789999999999999999999999999999999999998876 9999999999999998875 9999999999999998
Q ss_pred EEEEEecCCchHHHHH
Q 033058 100 IACSVTSNEASQLKTQ 115 (128)
Q Consensus 100 ~~v~i~~~~~~~~~~l 115 (128)
++++|+|++.+++.++
T Consensus 82 ~~vai~d~g~a~i~~~ 97 (101)
T 1w41_A 82 SALAVVDPGASRILAL 97 (101)
T ss_dssp CEEEEEECTTCCGGGG
T ss_pred EEEEEecCCHHHHHHH
Confidence 8899998776555443
No 18
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.93 E-value=1.2e-26 Score=165.53 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 15 DSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 15 ~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+.+++++++.+|+.|+++|+++.|.++++++|++|+++|||||+|++|.+++++++.+|++++|||++++|+.+||+|||
T Consensus 5 ~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 5 NQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp THHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 35677999999999999999999999999999999999999999998755999999999999999999999999999999
Q ss_pred C-----------CCceEEEEEecCCch----HHHHHHH
Q 033058 95 V-----------TRPVIACSVTSNEAS----QLKTQIQ 117 (128)
Q Consensus 95 ~-----------~~~~~~v~i~~~~~~----~~~~li~ 117 (128)
+ .+++++++|+|.+++ .+..+++
T Consensus 85 ~~k~d~~g~~rk~v~~s~vaI~d~g~~~~~~~~~~l~~ 122 (126)
T 2xzm_U 85 HFTANAKGEIKKVKGCSSLAIRKYAPEITEDEKKIIEG 122 (126)
T ss_dssp CCCBCTTCCBSCCCCCCEEEESSCCTTCCHHHHHHHTT
T ss_pred CCccccccCcCceeeEEEEEEEecCcccCHHHHHHHHH
Confidence 6 445888999988766 5555544
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.93 E-value=1.2e-25 Score=149.23 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=75.5
Q ss_pred HHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEe
Q 033058 26 VQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT 105 (128)
Q Consensus 26 L~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~ 105 (128)
+...+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|++++|||++++|+.+||+|||+++++++++|+
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 45688999999999999999999999999999999996 99999999999999999999999999999999999999885
No 20
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.90 E-value=2.7e-24 Score=153.15 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHhCCCCc
Q 033058 20 ITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTRP 98 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~ 98 (128)
++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ ++++++.+|..+++|+. +++|++|||+|||++++
T Consensus 13 ~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~-~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~ 91 (125)
T 3vi6_A 13 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL-RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYR 91 (125)
T ss_dssp SCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCccc
Confidence 67899999999999999999999999999999999999999997 99999999998888764 68999999999999999
Q ss_pred eEEEEEecCCc-hHHHHHHHH
Q 033058 99 VIACSVTSNEA-SQLKTQIQQ 118 (128)
Q Consensus 99 ~~~v~i~~~~~-~~~~~li~~ 118 (128)
+++++|+|++. ..+.+++++
T Consensus 92 v~~vaI~D~G~a~~l~~~~~~ 112 (125)
T 3vi6_A 92 VCTLAIIDPGDSDIIRSMPEQ 112 (125)
T ss_dssp CCEEEEEECTTCCCC------
T ss_pred EEEEEEeCchhHHHHHHHHHh
Confidence 88899988754 344555544
No 21
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.90 E-value=6.3e-24 Score=154.37 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHH--hCCCCEEEeCCHHHHhH
Q 033058 14 ADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAE--DKNVPYVFVPSKQALGR 91 (128)
Q Consensus 14 ~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~--~~~IP~~~~~sk~eLG~ 91 (128)
...+++++++.+|+.|+++|+++.|.+++.|+|++|+++|||||+|++|.++.++++.+|+ +++|||++++|+.+||+
T Consensus 20 ~~md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~ 99 (143)
T 3u5c_M 20 AEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGE 99 (143)
T ss_dssp CCSCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhH
Confidence 4566889999999999999999999999999999999999999999996669999999999 99999999999999999
Q ss_pred HhCCC--------C---ceEEEEEecCCc-hHHHHHHHH
Q 033058 92 ACGVT--------R---PVIACSVTSNEA-SQLKTQIQQ 118 (128)
Q Consensus 92 a~G~~--------~---~~~~v~i~~~~~-~~~~~li~~ 118 (128)
|||.. | ++++++|+|.+. ++..+.+.+
T Consensus 100 a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~l~~ 138 (143)
T 3u5c_M 100 WAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIME 138 (143)
T ss_dssp HSSCCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHHHHH
T ss_pred HhCcCccccCCCccccceeEEEEEcccchhhHHHHHHHH
Confidence 99964 3 466788887764 566665554
No 22
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.87 E-value=6.6e-23 Score=143.84 Aligned_cols=88 Identities=22% Similarity=0.421 Sum_probs=77.4
Q ss_pred HcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecCC--
Q 033058 31 NYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE-- 108 (128)
Q Consensus 31 ~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~~-- 108 (128)
+...|..|.++|+++|++|+++|||||+|++|.++..+++.+|+++||||++++|+.+||+|||+++. ++++|+|.+
T Consensus 22 ~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~-a~vai~d~~~e 100 (113)
T 3jyw_G 22 KPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTS-AVAALTEVRAE 100 (113)
T ss_dssp SSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSSC-CSEEEECSCSS
T ss_pred CCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCCc-EEEEEEeCCHH
Confidence 44568899999999999999999999999999878999999999999999999999999999999986 467777643
Q ss_pred -chHHHHHHHHH
Q 033058 109 -ASQLKTQIQQL 119 (128)
Q Consensus 109 -~~~~~~li~~i 119 (128)
...|.++++.|
T Consensus 101 d~~~l~~l~e~~ 112 (113)
T 3jyw_G 101 DEAALAKLVSTI 112 (113)
T ss_dssp TTTTTHHHHTTT
T ss_pred hHHHHHHHHHhh
Confidence 46788777654
No 23
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.85 E-value=2.9e-22 Score=157.86 Aligned_cols=93 Identities=22% Similarity=0.415 Sum_probs=79.8
Q ss_pred HcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecCCc-
Q 033058 31 NYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEA- 109 (128)
Q Consensus 31 ~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~~~- 109 (128)
+.++++.|.++|+++|++|+++|||||+|++|.++..+++.+|++++|||++++|+.+||+|||+++. ++++|+|.++
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~-s~VAItD~G~e 210 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTC-TTVAFTQVNSE 210 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSCC-SEEEETTCSST
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCc-eEEEEeecCcc
Confidence 45789999999999999999999999999999878999999999999999999999999999999965 5788876653
Q ss_pred --hHHHHHHHHHHHHHh
Q 033058 110 --SQLKTQIQQLKDAIE 124 (128)
Q Consensus 110 --~~~~~li~~i~~~~~ 124 (128)
+.|..+++.++++..
T Consensus 211 D~~al~klve~ik~~y~ 227 (266)
T 2zkr_f 211 DKGALAKLVEAIRTNYN 227 (266)
T ss_dssp TTTHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 578888888776643
No 24
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.85 E-value=5.3e-21 Score=149.60 Aligned_cols=113 Identities=23% Similarity=0.391 Sum_probs=91.5
Q ss_pred ccCCCChhHHHHHHHHHH-HHHHc-------CCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE
Q 033058 10 AYPLADSNLTITILDLVQ-QAANY-------KQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV 81 (128)
Q Consensus 10 ~~P~~~~~~~~~i~~lL~-~a~~a-------g~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~ 81 (128)
|+|.+.++-.++++.--. .|... -.|..|.++|+++|++|+++|||||+|++|.++..+++.+|++++|||+
T Consensus 92 yrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~ 171 (255)
T 4a17_F 92 YAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFA 171 (255)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEE
T ss_pred cCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEE
Confidence 677777766666554322 12111 1367899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHhHHhCCCCceEEEEEecCCc---hHHHHHHHHHHHHH
Q 033058 82 FVPSKQALGRACGVTRPVIACSVTSNEA---SQLKTQIQQLKDAI 123 (128)
Q Consensus 82 ~~~sk~eLG~a~G~~~~~~~v~i~~~~~---~~~~~li~~i~~~~ 123 (128)
++.|+.+||+++|+++.+ +++|++.++ ..|.++++.++++-
T Consensus 172 ~V~sK~~LG~avGrKt~s-~Vaitdv~~EDk~al~kLve~iktny 215 (255)
T 4a17_F 172 FVKGKAALGKLVNKKTAT-AVALTEVRNEDKAKLQQFSELFKTNY 215 (255)
T ss_dssp EESCHHHHHHHHTSSCCS-EEEECCCCHHHHHHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHhCCCcce-EEEeeccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999764 677876654 45888888888764
No 25
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=140.46 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHcCCccccHHHHHHHH--HcCceeEEEEecCCC-hhhH-----HhhHHHHHHhCCCCEEEeCCHH
Q 033058 16 SNLTITILDLVQQAANYKQLKKGANEATKTL--NRGISEFIVMAADTE-PLEI-----LLHLPLLAEDKNVPYVFVPSKQ 87 (128)
Q Consensus 16 ~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai--~~~kakLVilA~D~~-p~~~-----~~~l~~lc~~~~IP~~~~~sk~ 87 (128)
++++++++++|+.|+..++++.|.+++.|+| .+|++++||||.|++ |.++ ..+++.+|++++|||++++|+.
T Consensus 17 ~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k 96 (165)
T 2kg4_A 17 DKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPG 96 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHH
T ss_pred HHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHH
Confidence 6889999999999999999999999999999 999999999999997 5533 4556699999999999999999
Q ss_pred HHhHHhCC--------------CCceEEEEEecCCch
Q 033058 88 ALGRACGV--------------TRPVIACSVTSNEAS 110 (128)
Q Consensus 88 eLG~a~G~--------------~~~~~~v~i~~~~~~ 110 (128)
+||+|+|. .+.+++++|.++++.
T Consensus 97 ~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~ 133 (165)
T 2kg4_A 97 RLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSS 133 (165)
T ss_dssp HHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSC
T ss_pred HHHHHHCCcccccccccccCCCcccceEEEEeccccc
Confidence 99999996 367788888887654
No 26
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.84 E-value=2.2e-21 Score=151.96 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=92.0
Q ss_pred cccCCCChhHHHHHHHHHH-HHH---------HcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCC
Q 033058 9 KAYPLADSNLTITILDLVQ-QAA---------NYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV 78 (128)
Q Consensus 9 ~~~P~~~~~~~~~i~~lL~-~a~---------~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~I 78 (128)
.|+|.+.++-.++++.--. .|. +...|..|.++|+++|++|+++|||||+|++|.++..+++.+|++++|
T Consensus 96 kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gV 175 (256)
T 3izc_H 96 KYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGV 175 (256)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCC
Confidence 4778777766665543221 111 112366899999999999999999999999998888889999999999
Q ss_pred CEEEeCCHHHHhHHhCCCCceEEEEEecCC---chHHHHHHHHHHHHH
Q 033058 79 PYVFVPSKQALGRACGVTRPVIACSVTSNE---ASQLKTQIQQLKDAI 123 (128)
Q Consensus 79 P~~~~~sk~eLG~a~G~~~~~~~v~i~~~~---~~~~~~li~~i~~~~ 123 (128)
||++++|+.+||+|||+++. ++++|+|.+ ...|.++++.++++-
T Consensus 176 Py~~V~sK~eLG~A~Gkk~~-s~VAItD~g~eDk~al~kLve~iktny 222 (256)
T 3izc_H 176 PYAIVKGKARLGTLVNQKTS-AVAALTEVRAEDEAALAKLVSTIDANF 222 (256)
T ss_dssp CEEEESCHHHHHHHTTCSSC-CSEEEESSCCSCCHHHHHHHHHHHHHC
T ss_pred CEEEECCHHHHHHHhCCCCc-EEEEeecCChhhHHHHHHHHHHHHhhh
Confidence 99999999999999999965 577888654 367999999998874
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.80 E-value=1.2e-19 Score=141.79 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=92.0
Q ss_pred cccCCCChhHHHHHHHHHHHHHH--cC---------CccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCC
Q 033058 9 KAYPLADSNLTITILDLVQQAAN--YK---------QLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKN 77 (128)
Q Consensus 9 ~~~P~~~~~~~~~i~~lL~~a~~--ag---------~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~ 77 (128)
.|+|.+.++-.++++. .|.+ +| .+..|.++|+++|++++++|||||+|++|.++..+++.||+++|
T Consensus 94 KYrPEtk~ekk~rL~~---~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~g 170 (258)
T 3iz5_H 94 KYRPEDKAAKKERLLK---RAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKME 170 (258)
T ss_dssp CCCCTHHHHHHHHHHH---HHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTT
T ss_pred hcCCCChHHHHHHHHH---HHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcC
Confidence 4788877777765543 3332 22 35689999999999999999999999999999999999999999
Q ss_pred CCEEEeCCHHHHhHHhCCCCceEEEEEecC---CchHHHHHHHHHHHHH
Q 033058 78 VPYVFVPSKQALGRACGVTRPVIACSVTSN---EASQLKTQIQQLKDAI 123 (128)
Q Consensus 78 IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~---~~~~~~~li~~i~~~~ 123 (128)
||||++.++.+||+++|+++.+ ++++++. |...|.++++.++++-
T Consensus 171 VPY~iVk~KarLG~~vgrKtct-~Va~t~v~~eDk~aLakLveairtny 218 (258)
T 3iz5_H 171 VPYCIVKGKARLGSIVHKKTAS-VLCLTTVKNEDKLEFSKILEAIKANF 218 (258)
T ss_dssp CCEEEESCHHHHHHHTTCSSCC-SEEEEESCCSCCHHHHHHHHHHTTTS
T ss_pred CCeEEECCHHHHHHHhCCccce-EEEEEecCHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999865 5555543 4578999999988753
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.55 E-value=9.2e-14 Score=100.81 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC--ceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEEeCCHH
Q 033058 17 NLTITILDLVQQAANYKQLKKGANEATKTLNRG--ISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVFVPSKQ 87 (128)
Q Consensus 17 ~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~--kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~~~sk~ 87 (128)
.+...+..+|+.|...+.|+.|..++.|+|.++ ++.|+|+|.|++ +. +.+.+..+|.+|+||++.+++.+
T Consensus 8 ~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~-y~kLveAlC~E~~I~lIkVdd~k 86 (146)
T 3cg6_A 8 GAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQI-HFTLIQAFCCENDIDIVRVGDVQ 86 (146)
T ss_dssp CHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHH-HHHHHHHHHHHTTCEEEEECCHH
T ss_pred CHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHH-HHHHHHHHHhhcCCCeEEeCchh
Confidence 678899999999999999999999999999997 999999999998 35 88999999999999999999999
Q ss_pred HHhHHhCC------CCceEEEEEecCCc-----hHHHHHHHHHHHHH
Q 033058 88 ALGRACGV------TRPVIACSVTSNEA-----SQLKTQIQQLKDAI 123 (128)
Q Consensus 88 eLG~a~G~------~~~~~~v~i~~~~~-----~~~~~li~~i~~~~ 123 (128)
.||+++|+ .+..++++|.+.+. ..+..+.+.++++-
T Consensus 87 kLgew~Gk~d~~g~pr~~sCvvV~d~g~e~~~s~al~~l~~y~~e~~ 133 (146)
T 3cg6_A 87 RLAAIVGSDEEGGAPGDLHCILISNPNEDTWKDPALEKLSLFCEESR 133 (146)
T ss_dssp HHHHHC----------CCSEEEEECCC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcCCCCCCCCCEEEEEecCCcccccCHHHHHHHHHHHHhc
Confidence 99999995 35567888887763 34556666666543
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.48 E-value=6.2e-13 Score=98.08 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcC--ceeEEEEecCCC-hhh-----HHhhHHHHHHhCCCCEEEeCCHHHH
Q 033058 18 LTITILDLVQQAANYKQLKKGANEATKTLNRG--ISEFIVMAADTE-PLE-----ILLHLPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 18 ~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~--kakLVilA~D~~-p~~-----~~~~l~~lc~~~~IP~~~~~sk~eL 89 (128)
+...+..+|+.|...+.|+.|..++.|+|.++ ++.|+|+|.|++ +.| +.+.+..+|.+|+||++.+++...|
T Consensus 30 v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkL 109 (167)
T 3ffm_A 30 AGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRL 109 (167)
T ss_dssp HHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchH
Confidence 44889999999999999999999999999884 899999999985 222 5788999999999999999999999
Q ss_pred hHHhCCC------CceEEEEEecCCch-----HHHHHHHHHHHH
Q 033058 90 GRACGVT------RPVIACSVTSNEAS-----QLKTQIQQLKDA 122 (128)
Q Consensus 90 G~a~G~~------~~~~~v~i~~~~~~-----~~~~li~~i~~~ 122 (128)
|+++|+. +..++++|.++++. .+.++...+.+.
T Consensus 110 gew~G~~~~~~k~~~csCVlVtd~ge~s~k~~AL~~l~~fCees 153 (167)
T 3ffm_A 110 AAIVGAGEEAGAPGDLHCILISNPNEDAWKDPALEKLSLFCEES 153 (167)
T ss_dssp HHHHTTSCCSSSCSCCSEEEEECSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCCCCccEEEEECCCCcccccCHHHHHHHHHHHHh
Confidence 9999953 45788889988764 477777777664
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=96.50 E-value=0.012 Score=42.83 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred HHHcCCccccHHHHHHHHHcCceeEEEEecCCChh--------------------------------------------h
Q 033058 29 AANYKQLKKGANEATKTLNRGISEFIVMAADTEPL--------------------------------------------E 64 (128)
Q Consensus 29 a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~--------------------------------------------~ 64 (128)
+...|+.+.|.++|.+|+..|.+..++|..|-... +
T Consensus 41 ~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~ 120 (166)
T 3ir9_A 41 IADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTD 120 (166)
T ss_dssp HTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEE
T ss_pred hhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHH
Confidence 34579999999999999999999999999885321 3
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEec
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTS 106 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~ 106 (128)
+...+...++++|--+.++.++.+-|.-+=+..+ -+.||+.
T Consensus 121 ~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fG-GIaaiLR 161 (166)
T 3ir9_A 121 IVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFG-GIAAILR 161 (166)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTST-TEEEEES
T ss_pred HHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCC-CEEEEEe
Confidence 5678888999999999999999888876522222 1345554
No 31
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=95.32 E-value=0.058 Score=37.41 Aligned_cols=76 Identities=7% Similarity=-0.008 Sum_probs=57.9
Q ss_pred HHHHcCCccccHHHHHHHHHcCceeEEEEecCC----Ch---hhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceE
Q 033058 28 QAANYKQLKKGANEATKTLNRGISEFIVMAADT----EP---LEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 100 (128)
Q Consensus 28 ~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~----~p---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~ 100 (128)
+++..|+.+.|.++|.+|+..|.+..++|..|. +| .++.+ +...++++|..+.++.+..+-|.-+ +..+ -
T Consensus 32 i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~~g-G 108 (124)
T 1x52_A 32 LQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQLT-G 108 (124)
T ss_dssp HHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HTTT-T
T ss_pred HhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hcCC-C
Confidence 344458999999999999999999999999873 12 12344 6788889999999999988888777 4333 2
Q ss_pred EEEEec
Q 033058 101 ACSVTS 106 (128)
Q Consensus 101 ~v~i~~ 106 (128)
+.||+.
T Consensus 109 IaAiLR 114 (124)
T 1x52_A 109 VAAILR 114 (124)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 456665
No 32
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.067 Score=43.23 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCceeEEEEecCCChhh----HHhhHHHHHHhCCCCEEEeCCHHHHhHHhCC
Q 033058 20 ITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLE----ILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~----~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 95 (128)
++++..|. .. |+.+.|.++|.+|++.|.+.-++|..|-...+ ....+...++++|--+.++.+..+-|.-+ .
T Consensus 254 e~f~~~l~--~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~ 329 (352)
T 3oby_A 254 DRLLEGIA--KG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-M 329 (352)
T ss_dssp HHHHHHHH--HT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-H
T ss_pred HHHHHHHh--cC-CcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-h
Confidence 44444443 34 99999999999999999999999998763321 35678888899999999999987777766 3
Q ss_pred CCceEEEEEecC
Q 033058 96 TRPVIACSVTSN 107 (128)
Q Consensus 96 ~~~~~~v~i~~~ 107 (128)
..+ -++||+..
T Consensus 330 ~lG-GIaAiLRy 340 (352)
T 3oby_A 330 SLG-GIAALLRF 340 (352)
T ss_dssp HTT-SEEEEESS
T ss_pred cCC-CEEEEEec
Confidence 333 34667654
No 33
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=94.33 E-value=0.046 Score=44.13 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=52.7
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCCh---hhHHhhHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTEP---LEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p---~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
+..|+.+.|.++|.+|++.|.+.-+++..|... ++....+...++++|--+.++.+..+-|.-+
T Consensus 276 ~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL 342 (357)
T 3j15_A 276 RNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL 342 (357)
T ss_dssp HSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred cCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh
Confidence 346899999999999999999999999877532 3367888999999999999998776656554
No 34
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=94.20 E-value=0.11 Score=41.76 Aligned_cols=72 Identities=8% Similarity=-0.005 Sum_probs=58.6
Q ss_pred CCccccHHHHHHHHHcCceeEEEEecCCC-hhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecC
Q 033058 33 KQLKKGANEATKTLNRGISEFIVMAADTE-PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 107 (128)
Q Consensus 33 g~lv~G~~~v~kai~~~kakLVilA~D~~-p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~ 107 (128)
++.+.|.++|.+|++.|.+..+++..|-. ..+ ...+...++++|-.+.++.+..+-|.-+ ...+ -++||+..
T Consensus 264 d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~lG-GIAaiLRy 336 (347)
T 2qi2_A 264 DMGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKFG-GFAGILRY 336 (347)
T ss_dssp TCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHTT-SEEEEECS
T ss_pred CCEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH-HhcC-CEEEEEec
Confidence 39999999999999999999999999874 333 6788889999999999999998888777 4433 24567654
No 35
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=94.13 E-value=0.28 Score=38.18 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHcC-ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecCC-chHH
Q 033058 35 LKKGANEATKTLNRG-ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE-ASQL 112 (128)
Q Consensus 35 lv~G~~~v~kai~~~-kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~~-~~~~ 112 (128)
++.|.+.|..+++.+ .+.-|++.++.... ..+...|+..++|+..+ +.+.|.+..+...+--++++.... ..++
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~~~~~l 111 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVPRPARL 111 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECCCCCCH
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecCCCCCH
Confidence 889999999999987 57778888877543 45677788899998776 678888888764333345555432 3344
Q ss_pred HHH
Q 033058 113 KTQ 115 (128)
Q Consensus 113 ~~l 115 (128)
.++
T Consensus 112 ~~~ 114 (277)
T 3nk6_A 112 ADI 114 (277)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 36
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=93.80 E-value=0.19 Score=41.75 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=52.9
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCC----------------------h-----------------------hh
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTE----------------------P-----------------------LE 64 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~----------------------p-----------------------~~ 64 (128)
+..|+.+.|.++|.+|++.|.+.-++|..|.. + .+
T Consensus 301 ~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~ 380 (441)
T 3e20_C 301 LDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSML 380 (441)
T ss_dssp TTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEE
T ss_pred cCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhh
Confidence 34689999999999999999999999987763 0 02
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
+.+.+...++++|.-+.++.+..+-|.-+
T Consensus 381 ~ve~l~e~a~~~G~~v~~vs~~~~eG~ql 409 (441)
T 3e20_C 381 LSEWLAEHYKDYGANLEFVSDRSQEGMQF 409 (441)
T ss_dssp HHHHHHHHGGGGSCCEEEECTTSHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCHHHHHH
Confidence 44567889999999999999998888766
No 37
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=93.55 E-value=0.13 Score=41.62 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=56.9
Q ss_pred HcCCccccHHHHHHHHHcCceeEEEEecCCCh-----hhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEe
Q 033058 31 NYKQLKKGANEATKTLNRGISEFIVMAADTEP-----LEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT 105 (128)
Q Consensus 31 ~ag~lv~G~~~v~kai~~~kakLVilA~D~~p-----~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~ 105 (128)
..|+.+.|.++|.+|++.|.+.-+++..|..- ++....+...++++|--+.++.+..+-|.-+ ...+ -++||+
T Consensus 282 d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL-~~lG-GIAAiL 359 (364)
T 3obw_A 282 QPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL-KNLT-GILAIL 359 (364)
T ss_dssp SCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH-HHTT-TEEEEE
T ss_pred CCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh-hcCC-cEEEEE
Confidence 35899999999999999999999999988642 2356778888899999999999887766655 2222 234555
Q ss_pred c
Q 033058 106 S 106 (128)
Q Consensus 106 ~ 106 (128)
.
T Consensus 360 R 360 (364)
T 3obw_A 360 R 360 (364)
T ss_dssp S
T ss_pred e
Confidence 4
No 38
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=93.41 E-value=0.4 Score=36.65 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=51.9
Q ss_pred CccccHHHHHHHHHcC--ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecC
Q 033058 34 QLKKGANEATKTLNRG--ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 107 (128)
Q Consensus 34 ~lv~G~~~v~kai~~~--kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~ 107 (128)
.++.|.+.|..+++.+ .+.-|++.++.... -...+..+++..++|+..+. ++.|-+..+....--++++...
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~i~v~~v~-~~~l~~ls~~~~~qGv~a~~~~ 86 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDK-RLLPLIHALESQGVVIQLAN-RQYLDEKSDGAVHQGIIARVKP 86 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCT-TTHHHHHHHHHHTCEEEEEC-SHHHHHTTTSCCCTTEEEEECC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccch-hHHHHHHHHHHCCCcEEEeC-HHHHHHHhCCCCCcEEEEEEec
Confidence 4789999999999987 57888888876543 24567777888899986665 5788888876432234555543
No 39
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=92.49 E-value=0.25 Score=35.58 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=46.0
Q ss_pred cHHHHHHHHHcCceeEEEEecC---CCh-hhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCCCc
Q 033058 38 GANEATKTLNRGISEFIVMAAD---TEP-LEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRP 98 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D---~~p-~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~ 98 (128)
|..++...|++|++.+||--.| ..| ..=...+...|-.+||||.+- .+.+-+=+++=.+..
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai~~~~~ 135 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSPHFNDA 135 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGGGGSC
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcccc
Confidence 7789999999999999999998 344 213577899999999999764 455666555444443
No 40
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=92.33 E-value=0.4 Score=38.47 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHH
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRA 92 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a 92 (128)
+..|+.+.|.++|.+|+..|.+..++|..| . +....+...+..+|-.+.++.+..+-|..
T Consensus 295 ~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g~q 354 (373)
T 3agk_A 295 KGTGMIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEAEW 354 (373)
T ss_dssp TTCCCEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTHHH
T ss_pred cCCCcEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccHHH
Confidence 346899999999999999999999999998 3 46888999999999999999888666643
No 41
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=91.66 E-value=0.41 Score=38.42 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=57.8
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCC----h--hhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEE
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTE----P--LEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 103 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~----p--~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~ 103 (128)
+..|+.+.|.++|.+|+..|.+.-++|..|.. + ++....+...++++|-.+.++.+..+-|.-+ ...+ -++|
T Consensus 268 ~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL-~~~g-GIaA 345 (358)
T 3agj_B 268 KSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL-VSFG-GVIA 345 (358)
T ss_dssp HCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH-GGGT-TEEE
T ss_pred cCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh-hcCC-cEEE
Confidence 44689999999999999999999999988742 1 1235677778889999999999988888766 3322 2456
Q ss_pred EecC
Q 033058 104 VTSN 107 (128)
Q Consensus 104 i~~~ 107 (128)
|+..
T Consensus 346 iLRy 349 (358)
T 3agj_B 346 LLRY 349 (358)
T ss_dssp EESS
T ss_pred EEec
Confidence 6653
No 42
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.44 E-value=0.4 Score=39.04 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=50.5
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCC----hhhHHh---hHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTE----PLEILL---HLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~----p~~~~~---~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
...|+.+.|.++|.+|++.|.+.-++|..+.- +. ..+ .+...++++|--+.++.+..+-|.-+
T Consensus 287 ~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~-~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL 356 (390)
T 3mca_B 287 EDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIA-TRKKWVSLVEGVKEINCPVYIFSSLHESGKQL 356 (390)
T ss_dssp HCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHH-HHHHHHHHHHHHHHTTCCEEEECTTSHHHHHH
T ss_pred cCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChh-HHHHHHHHHHHHHhcCCEEEEECCCCCchhhh
Confidence 34689999999999999999999999987752 11 122 56677889999999999987777776
No 43
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=91.34 E-value=0.59 Score=38.35 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=54.7
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCC--------hh-----------------------------------hHH
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTE--------PL-----------------------------------EIL 66 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~--------p~-----------------------------------~~~ 66 (128)
+..|+.+.|.++|.+|++.|.+..++|..|.. +. ++.
T Consensus 296 ~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~v 375 (437)
T 1dt9_A 296 QDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLL 375 (437)
T ss_dssp SSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHH
T ss_pred cCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHH
Confidence 44689999999999999999999999988764 10 123
Q ss_pred hhHHHHHHhCCCCEEEeCCHHHHhHH-hCCCCceEEEEEe
Q 033058 67 LHLPLLAEDKNVPYVFVPSKQALGRA-CGVTRPVIACSVT 105 (128)
Q Consensus 67 ~~l~~lc~~~~IP~~~~~sk~eLG~a-~G~~~~~~~v~i~ 105 (128)
..+...++++|-.+.++.+..+-|.- +.---++ .||+
T Consensus 376 e~L~e~~~~~G~~V~ivs~~~e~G~q~l~~~gGI--aAiL 413 (437)
T 1dt9_A 376 EWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGI--GGIL 413 (437)
T ss_dssp HHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTE--EEEC
T ss_pred HHHHHHHHHcCCEEEEECCCChhHHHHHHhCCCE--EEEE
Confidence 34777888999999999998877765 3333343 3444
No 44
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=90.90 E-value=0.23 Score=34.96 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHcCceeEEEEecC--C-Ch--hhHHhhHHHHHHhCCCCEEEe-CCHHHHhHH
Q 033058 37 KGANEATKTLNRGISEFIVMAAD--T-EP--LEILLHLPLLAEDKNVPYVFV-PSKQALGRA 92 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA~D--~-~p--~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a 92 (128)
-|..++...|++|++.+||--.| . .| .| ...+...|-.+||||.+- .+.+.+=++
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D-~~~IrR~A~~~~IP~~T~latA~a~v~a 121 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPD-VQALLRVCDVHGVPLATNPMAAEALIPW 121 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCC-SHHHHHHHHHHTCCEECSHHHHHHHHHH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccch-HHHHHHHHHHcCCCeEcCHHHHHHHHHH
Confidence 57889999999999999999998 3 22 22 477899999999999764 444444444
No 45
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=90.53 E-value=0.31 Score=36.04 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred cHHHHHHHHHcCceeEEEEecC---CCh--hhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCCc
Q 033058 38 GANEATKTLNRGISEFIVMAAD---TEP--LEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTRP 98 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D---~~p--~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~~ 98 (128)
|..++...|++|++.+||--.| ..| .| ...+...|-.+||||.+ ..+.+-+=+++=.+..
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D-~~~IRR~A~~~~IP~~TnlatA~A~v~ail~~~~ 151 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVD-VKALIRIATVYNIPVAITRSTADFLISSPLMNDV 151 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCC-HHHHHHHHHHTTCCEESSHHHHHHHHHSGGGGSC
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCccccc-HHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcccc
Confidence 7789999999999999999988 333 22 57789999999999976 4566666666544443
No 46
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=89.85 E-value=1.4 Score=35.75 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=56.8
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCC----hh--hHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEE
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTE----PL--EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 103 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~----p~--~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~ 103 (128)
+..|+.+.|.++|.+|+..|.+..++|..|.- +. +-...+...++++|-.+.++.+..+-|.-+.---+ ++|
T Consensus 293 ~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL~~lgG--IAA 370 (386)
T 2vgn_A 293 KDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTG--IAC 370 (386)
T ss_dssp TTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHHTTT--EEE
T ss_pred cCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhHhccCc--EEE
Confidence 44589999999999999999999999999852 21 12466677788999999999999888877622223 345
Q ss_pred Eec
Q 033058 104 VTS 106 (128)
Q Consensus 104 i~~ 106 (128)
|+.
T Consensus 371 iLR 373 (386)
T 2vgn_A 371 ILK 373 (386)
T ss_dssp EES
T ss_pred EEe
Confidence 554
No 47
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=89.39 E-value=2.9 Score=29.18 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=41.4
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.++.+++++...-.|+|-.+.+.. ....+..+|+++|+|+-.+.+
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~~-~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQYQ-SYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCHH-HHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCHH-HHHHHHHHHHHcCCCeEEecC
Confidence 566789999999999999999987 899999999999999999877
No 48
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=88.76 E-value=0.85 Score=30.52 Aligned_cols=55 Identities=7% Similarity=-0.003 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHh
Q 033058 36 KKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90 (128)
Q Consensus 36 v~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG 90 (128)
+.|.++..+.+++..+..|++|-.........++...|..+++.+.++++..++-
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~~ 105 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLV 105 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHHh
Confidence 3456778888888889899999754333367889999999999999999887653
No 49
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=87.72 E-value=1.4 Score=33.95 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=46.3
Q ss_pred ccccHHHHHHHHHcC-ceeEEEEecCCChhhHHhhHHHHHHhCC-CCEEEeCCHHHHhHHhCCCCceEEEEEec
Q 033058 35 LKKGANEATKTLNRG-ISEFIVMAADTEPLEILLHLPLLAEDKN-VPYVFVPSKQALGRACGVTRPVIACSVTS 106 (128)
Q Consensus 35 lv~G~~~v~kai~~~-kakLVilA~D~~p~~~~~~l~~lc~~~~-IP~~~~~sk~eLG~a~G~~~~~~~v~i~~ 106 (128)
++.|.+.|..+++.+ .+.-|++.++.... ....+...++.++ +|+.. -+.+.|-+..+...+--++++..
T Consensus 30 ~veG~~~v~eal~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~~~~v~~-v~~~~l~~ls~~~~~qGv~a~~~ 101 (274)
T 1ipa_A 30 LIEGAREIERALQAGIELEQALVWEGGLNP-EEQQVYAALGRVGRLALLE-VSEAVLKKLSVRDNPAGLIALAR 101 (274)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTCCCH-HHHHHHHCC-----CEEEE-ECHHHHHHHCCSSSCCSEEEEEE
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEEcCcccc-hHHHHHHHHHhcCCccEEE-eCHHHHHHHhCCCCCCeEEEEEe
Confidence 789999999999987 57888888887543 2355666777788 88654 45788888887653222344443
No 50
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=86.47 E-value=0.91 Score=31.65 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHcCceeEEEEecCCC--hhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNRGISEFIVMAADTE--PLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~--p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.++...|++|++.+||--.|-. +..=-..+...|-.++|||++-
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 5789999999999999988763 2212467889999999999764
No 51
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=85.31 E-value=7.4 Score=26.99 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC-----CCCceEEEEEecCCchHHH
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG-----VTRPVIACSVTSNEASQLK 113 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G-----~~~~~~~v~i~~~~~~~~~ 113 (128)
.+++.+.|+++-++.|++-+|-++..-...+.. -+++|+.+-.+.++++.-.-+- -+.--.++.++..+..-++
T Consensus 15 lkeivreikrqgvrvvllysdqdekrrrerlee-fekqgvdvrtvedkedfrenireiwerypqldvvvivttddkewik 93 (162)
T 2l82_A 15 LKEIVREIKRQGVRVVLLYSDQDEKRRRERLEE-FEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIK 93 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHH-HHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEecCchHHHHHHHHHH-HHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHH
Confidence 356778889999999999999998744444443 4678999999999987654321 1222234455555666777
Q ss_pred HHHHHHHH
Q 033058 114 TQIQQLKD 121 (128)
Q Consensus 114 ~li~~i~~ 121 (128)
+.+++.++
T Consensus 94 dfieeake 101 (162)
T 2l82_A 94 DFIEEAKE 101 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77877765
No 52
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=81.25 E-value=5.9 Score=34.55 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCc---cccHHHHHHHH--------HcCceeEEEEecCCChhh-------------------------
Q 033058 21 TILDLVQQAANYKQL---KKGANEATKTL--------NRGISEFIVMAADTEPLE------------------------- 64 (128)
Q Consensus 21 ~i~~lL~~a~~ag~l---v~G~~~v~kai--------~~~kakLVilA~D~~p~~------------------------- 64 (128)
++.+.++..+-+|.+ -.|...+..++ +++..+|+|++.|+.+..
T Consensus 202 ~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y 281 (690)
T 3fcs_B 202 RFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHY 281 (690)
T ss_dssp HHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBB
T ss_pred HHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCcc
Confidence 344444444334432 13566666766 334679999999997540
Q ss_pred ---------HHhhHHHHHHhCCCCEEEeCCH------HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 65 ---------ILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 65 ---------~~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
....+.....+++|..+|.-+. ++|...++. +.++++..+++++.++|.+....|.+
T Consensus 282 ~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i~~----s~v~~l~~dSsni~~li~~~y~~i~s 353 (690)
T 3fcs_B 282 SASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPG----TTVGVLSMDSSNVLQLIVDAYGKIRS 353 (690)
T ss_dssp GGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHSTT----CEEEEECTTCTTHHHHHHHHHHHHTT
T ss_pred ccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhcCC----ceeeeeccccHHHHHHHHHHHHhhhc
Confidence 0345666666788987776443 456666543 36788888999999999988877654
No 53
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=80.03 E-value=3.3 Score=32.08 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=44.1
Q ss_pred ccccHHHHHHHHHcCc-eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCC-CceEEEEEec
Q 033058 35 LKKGANEATKTLNRGI-SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVT-RPVIACSVTS 106 (128)
Q Consensus 35 lv~G~~~v~kai~~~k-akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~-~~~~~v~i~~ 106 (128)
++.|.+.|..+++.+. +.-|++.++.... ..+..+.+..++|+.. -+.+.|.+..+.. .+--++++..
T Consensus 42 ~veG~~~V~eal~~~~~i~~l~~~~~~~~~---~~~~~l~~~~~~~v~~-v~~~~l~~ls~~~~~~qGv~a~~~ 111 (287)
T 1x7o_A 42 LVMGVRPISLAVEHGWPVRTLLYDGQRELS---KWARELLRTVRTEQIA-MAPDLLMELGEKNEAPPEVVAVVE 111 (287)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEESSCCCC---HHHHHHHHHSCSEEEE-ECHHHHTTSSCSSSCCCSEEEEEE
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEecCcccc---hhHHHHHHHcCCcEEE-eCHHHHHHHhCCCCCCCcEEEEEe
Confidence 7899999999999875 7788888776431 1122333333477644 4678898888776 3222345443
No 54
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=75.15 E-value=5.9 Score=31.71 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=49.0
Q ss_pred ceeEEEEe-cCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 50 ISEFIVMA-ADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 50 kakLVilA-~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
++-++|+- +--|.| ..+|...|++.+.|.+.+.+..||-...=... ..++|+- ++|.-..+++++.+.+..+
T Consensus 225 ~vD~miVVGg~nSSN--T~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~--~~VGITA-GASTP~~lieeVi~~l~~~ 297 (328)
T 3szu_A 225 QAEVVLVVGSKNSSN--SNRLAELAQRMGKRAFLIDDAKDIQEEWVKEV--KCVGVTA-GASAPDILVQNVVARLQQL 297 (328)
T ss_dssp HCSEEEEECCTTCHH--HHHHHHHHHHTTCEEEEESSGGGCCHHHHTTC--SEEEEEE-CTTCCHHHHHHHHHHHHHT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHHHhCCCEEEeCChHHCCHHHhCCC--CEEEEee-cCCCCHHHHHHHHHHHHHh
Confidence 45454444 444555 58999999999999999999988864322222 3567775 4566667788877777654
No 55
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=74.88 E-value=15 Score=24.13 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=33.5
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCH---HHHhHHhCCCC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSK---QALGRACGVTR 97 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk---~eLG~a~G~~~ 97 (128)
..+.+|.+..|.... ..+.+..+++++++++..+ ++. .++.+..|...
T Consensus 60 ~~~~vv~vs~d~~~d-~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~ 111 (164)
T 2ggt_A 60 PDLTPLFISIDPERD-TKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYY 111 (164)
T ss_dssp CCEEEEEEESCTTTC-CHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCCE
T ss_pred CcEEEEEEEeCCCCC-CHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeEE
Confidence 368888888886543 4567788888999887654 333 35777888753
No 56
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=74.20 E-value=16 Score=28.20 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=53.3
Q ss_pred cHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCC-EEEeCCHHHHhHHhCCCCceEEEEEecCC
Q 033058 38 GANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVP-YVFVPSKQALGRACGVTRPVIACSVTSNE 108 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~~~~~~v~i~~~~ 108 (128)
=..++..+..-|--.+++++.+.++. ....+...|++.|.. ++.+.+.+|+-++.-.. +-.++++..+
T Consensus 131 d~~qi~ea~~~GAD~VlLi~a~L~~~-~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~g--a~iIGinnr~ 199 (272)
T 3tsm_A 131 DPYQVYEARSWGADCILIIMASVDDD-LAKELEDTAFALGMDALIEVHDEAEMERALKLS--SRLLGVNNRN 199 (272)
T ss_dssp STHHHHHHHHTTCSEEEEETTTSCHH-HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSC--CSEEEEECBC
T ss_pred CHHHHHHHHHcCCCEEEEcccccCHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCEEEECCCC
Confidence 34478888888887888888888876 678889999999985 57899999999996544 4467887544
No 57
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=72.71 E-value=6.3 Score=26.70 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=36.0
Q ss_pred ccc-cHHHH--HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC-CHHHHh
Q 033058 35 LKK-GANEA--TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP-SKQALG 90 (128)
Q Consensus 35 lv~-G~~~v--~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~-sk~eLG 90 (128)
++. |.++- ..++.--....+|++.+..|. ..+..+|++++||++... +.-+..
T Consensus 56 ~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~---~~i~~~A~~~~ipvl~t~~~T~~~~ 112 (139)
T 2ioj_A 56 LVTGGDRSDLLLTALEMPNVRCLILTGNLEPV---QLVLTKAEERGVPVILTGHDTLTAV 112 (139)
T ss_dssp EEEETTCHHHHHHHTTCTTEEEEEEETTCCCC---HHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred EEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC---HHHHHHHHHCCCeEEEECCCHHHHH
Confidence 445 76642 334431458999999998876 566799999999998765 443333
No 58
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=71.95 E-value=7 Score=29.19 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=46.7
Q ss_pred ceeEEEEecCCChhh---------------------------------HHhhHHHHHHhCCCCEEEeCCHH------HHh
Q 033058 50 ISEFIVMAADTEPLE---------------------------------ILLHLPLLAEDKNVPYVFVPSKQ------ALG 90 (128)
Q Consensus 50 kakLVilA~D~~p~~---------------------------------~~~~l~~lc~~~~IP~~~~~sk~------eLG 90 (128)
.-+++|+..|+.+.. ....+.....++||+.+|.-+.. +|-
T Consensus 104 a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l~ 183 (212)
T 2iue_A 104 GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLT 183 (212)
T ss_dssp SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHHH
T ss_pred ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHHH
Confidence 679999999997641 11224555556789888776663 444
Q ss_pred HHhCCCCceEEEEEecCCchHHHHHHHHHHH
Q 033058 91 RACGVTRPVIACSVTSNEASQLKTQIQQLKD 121 (128)
Q Consensus 91 ~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~ 121 (128)
..++ -+.++.+..+++++.+++.+-..
T Consensus 184 ~~i~----~s~v~~L~~dSsni~~li~~~y~ 210 (212)
T 2iue_A 184 TFIP----KLTIGELSDDSSNVAQLIRNAYS 210 (212)
T ss_dssp HHST----TCEEEEESSCCHHHHHHHHHHHH
T ss_pred HHcc----cceeeeecCCcHHHHHHHHHHHh
Confidence 4444 24678888899999999887554
No 59
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=71.35 E-value=15 Score=29.02 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.0
Q ss_pred ceeEEEEecC-CChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhhh
Q 033058 50 ISEFIVMAAD-TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 50 kakLVilA~D-~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~~ 126 (128)
++-++|+-.+ -|.| ..+|-..|++.+.|-+.+.+..||-...=.. ...++|+- ++|.-..+++++.+.+..+
T Consensus 209 ~~D~miVVGg~nSSN--T~rL~eia~~~~~~ty~Ie~~~el~~~wl~~--~~~VGITA-GASTP~~li~eVi~~l~~~ 281 (297)
T 3dnf_A 209 EVDVMIIIGGKNSGN--TRRLYYISKELNPNTYHIETAEELQPEWFRG--VKRVGISA-GASTPDWIIEQVKSRIQEI 281 (297)
T ss_dssp GSSEEEEESCTTCHH--HHHHHHHHHHHCSSEEEESSGGGCCGGGGTT--CSEEEEEE-CTTCCHHHHHHHHHHHHHC
T ss_pred hCCEEEEECCCCCch--hHHHHHHHHhcCCCEEEeCChHHCCHHHhCC--CCEEEEee-cCCCCHHHHHHHHHHHHHh
Confidence 4655555444 4555 5899999999999999999999986542222 23567775 3566666777777766543
No 60
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=69.63 E-value=19 Score=30.05 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCc---cccHHHHHHHHH-------cCceeEEEEecCCChhh-------------------------
Q 033058 20 ITILDLVQQAANYKQL---KKGANEATKTLN-------RGISEFIVMAADTEPLE------------------------- 64 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~l---v~G~~~v~kai~-------~~kakLVilA~D~~p~~------------------------- 64 (128)
.++.+.++..+-+|.+ -.|......++. ++.-+++|++.|+.+.-
T Consensus 210 ~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt 289 (454)
T 3vi3_B 210 EVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYT 289 (454)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEEC
T ss_pred HHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCccc
Confidence 3444555544444442 245666666652 22569999999997530
Q ss_pred --------HHhhHHHHHHhCCCCEEEeCCH------HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 65 --------ILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 65 --------~~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
...++.....++||-.+|.-++ ++|...++. +.++++..+++++.++|.+-...|.+
T Consensus 290 ~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsNiv~LI~~aY~~i~S 360 (454)
T 3vi3_B 290 MSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK----SAVGTLSANSSNVIQLIIDAYNSLSS 360 (454)
T ss_dssp CTTTSCCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHSTT----EEEEEECTTCTTHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhCCC----ceeeEccccchhHHHHHHHHHHHhhe
Confidence 1455667777889987775443 567777654 47889999999999999988877754
No 61
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=68.41 E-value=19 Score=22.83 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=17.1
Q ss_pred eEEEEecCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 52 EFIVMAADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 52 kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.++|...+.=|. -.....+.+++||||..
T Consensus 5 ~I~vYs~~~Cp~--C~~aK~~L~~~gi~y~~ 33 (92)
T 2lqo_A 5 ALTIYTTSWCGY--CLRLKTALTANRIAYDE 33 (92)
T ss_dssp CEEEEECTTCSS--HHHHHHHHHHTTCCCEE
T ss_pred cEEEEcCCCCHh--HHHHHHHHHhcCCceEE
Confidence 344444444453 45666677777888754
No 62
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=67.85 E-value=22 Score=29.80 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCc---cccHHHHHHHH--------HcCceeEEEEecCCChhh------------------------
Q 033058 20 ITILDLVQQAANYKQL---KKGANEATKTL--------NRGISEFIVMAADTEPLE------------------------ 64 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~l---v~G~~~v~kai--------~~~kakLVilA~D~~p~~------------------------ 64 (128)
.++.+.++..+-+|.+ -.|......++ +++.-+++|++.|+.+..
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~ 280 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCB
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCc
Confidence 4455566655555553 24566666665 224479999999986430
Q ss_pred ----------HHhhHHHHHHhCCCCEEEeCCH------HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 65 ----------ILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 65 ----------~~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
....+.....++||..+|.-+. ++|...+.. +.++.+..|++++.+||.+....|.+
T Consensus 281 Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~L~~dSsNiv~LI~~aY~~i~s 353 (472)
T 3t3p_B 281 YSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPG----TTVGVLSMDSSNVLQLIVDAYGKIRS 353 (472)
T ss_dssp BTTTTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTSTT----CEEEECCTTSTTHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHHhCCC----ceeeeccccchhHHHHHHHHHHHhhe
Confidence 1344555566778887776544 466666543 46889999999999999988877754
No 63
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=67.35 E-value=40 Score=25.81 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=66.3
Q ss_pred CccccCCCChhHHH--------------HHHHHHHHHHHcC-C---cc---------ccHHHHHHHH-HcCceeEEEEec
Q 033058 7 NPKAYPLADSNLTI--------------TILDLVQQAANYK-Q---LK---------KGANEATKTL-NRGISEFIVMAA 58 (128)
Q Consensus 7 ~p~~~P~~~~~~~~--------------~i~~lL~~a~~ag-~---lv---------~G~~~v~kai-~~~kakLVilA~ 58 (128)
.|++.|+++-..-+ +++++++..++.. + ++ .|...-.+.. +.| +.-||+ .
T Consensus 55 iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aG-vdGvIi-p 132 (271)
T 3nav_A 55 MPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAG-VDSVLI-A 132 (271)
T ss_dssp CCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHT-CCEEEE-T
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCC-CCEEEE-C
Confidence 58999988854443 6778888877652 2 22 3555444444 445 444444 6
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEe--C-C-HHHHhHHhCCCCce----EEEEEe---cCCchHHHHHHHHHHHHH
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFV--P-S-KQALGRACGVTRPV----IACSVT---SNEASQLKTQIQQLKDAI 123 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~--~-s-k~eLG~a~G~~~~~----~~v~i~---~~~~~~~~~li~~i~~~~ 123 (128)
|..+. -...+...|+++++..++. + | .+.+-++......- +..+++ .....++.++++.+|...
T Consensus 133 Dlp~e-e~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 207 (271)
T 3nav_A 133 DVPTN-ESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD 207 (271)
T ss_dssp TSCGG-GCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT
T ss_pred CCCHH-HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc
Confidence 88776 4788999999999976543 2 3 35555544333221 111222 222356778888888754
No 64
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=64.50 E-value=36 Score=25.72 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=41.8
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC--HHHHhHHhCCCCceEEEEEecCCc-------hHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS--KQALGRACGVTRPVIACSVTSNEA-------SQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~~v~i~~~~~-------~~~~~li~~i~~~~~~ 125 (128)
+.+|. -...+..++++++|+++|+.+ ...+.+.+-+..++-++. +++-. .++.++++..-+++..
T Consensus 206 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~-ld~l~~~~~~~~~~Y~~~m~~n~~~l~~ 279 (284)
T 2prs_A 206 QPGAQ-RLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGT-LDPLGTNIKLGKTSYSEFLSQLANQYAS 279 (284)
T ss_dssp CCCHH-HHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEE-CCTTCTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEE-eccCcccCCCCcccHHHHHHHHHHHHHH
Confidence 44566 568888999999999999863 246666666666654443 44322 2577776665555543
No 65
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=63.10 E-value=8.6 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.1
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+.+|. -...+.+++++++|+++|+.
T Consensus 195 eps~~-~l~~l~~~ik~~~v~~if~e 219 (282)
T 3mfq_A 195 EVANS-DMIETVNLIIDHNIKAIFTE 219 (282)
T ss_dssp CCCHH-HHHHHHHHHHHHTCCEEECB
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEe
Confidence 34565 46777888888888888764
No 66
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=63.01 E-value=19 Score=27.83 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=55.6
Q ss_pred CccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCC-EEEeCCHHHHhHHhCCCCceEEEEEecCC
Q 033058 34 QLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVP-YVFVPSKQALGRACGVTRPVIACSVTSNE 108 (128)
Q Consensus 34 ~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~~~~~~v~i~~~~ 108 (128)
.++.-.-|+.++-.-|-=-+++|++--++. ....+..+|++.|.. ++.+.+.+||-+++.... .+++|.+.+
T Consensus 111 DFiid~yQI~eAr~~GADaILLI~a~L~~~-~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a--~iIGINNRn 183 (258)
T 4a29_A 111 DFIVKESQIDDAYNLGADTVLLIVKILTER-ELESLLEYARSYGMEPLILINDENDLDIALRIGA--RFIGIMSRD 183 (258)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEEEGGGSCHH-HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTC--SEEEECSBC
T ss_pred cccccHHHHHHHHHcCCCeeehHHhhcCHH-HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCC--cEEEEeCCC
Confidence 355666777777777776777788888886 578899999999995 688999999999976544 467887544
No 67
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=61.34 E-value=19 Score=22.81 Aligned_cols=52 Identities=6% Similarity=0.036 Sum_probs=34.3
Q ss_pred HHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCC
Q 033058 45 TLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTR 97 (128)
Q Consensus 45 ai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~ 97 (128)
......+.++.+..|.+.. ....+..+.+++++++-. .....++.+..|...
T Consensus 62 ~~~~~~~~~v~v~~d~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 114 (145)
T 3erw_A 62 AHPSDSVKLVTVNLVNSEQ-NQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT 114 (145)
T ss_dssp HCCCSSEEEEEEECGGGSS-CHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCE
T ss_pred HcCCCCEEEEEEEccCCcC-CHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCc
Confidence 3333457777777776333 356667777888887643 455678999988874
No 68
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=60.69 E-value=13 Score=28.49 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC--H----HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS--K----QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s--k----~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
+.+|. ....+..++++++|+++|+.+ . +.|.+..|.+ + ..+++-..+|.++++..-+++..
T Consensus 220 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~----v-~~ld~l~~~Y~~~m~~n~~~l~~ 286 (291)
T 1pq4_A 220 EPSAQ-ELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG----V-ELLDPLAADWSSNLKAVAQKIAN 286 (291)
T ss_dssp CCCHH-HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE----E-EEECTTCSSHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe----E-EEEcCchhhHHHHHHHHHHHHHH
Confidence 44666 578889999999999998642 1 3455555533 2 34566556777777766665544
No 69
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=59.20 E-value=14 Score=30.11 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=39.6
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC----CCCceEEEEEecCC-chHHHHHHH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG----VTRPVIACSVTSNE-ASQLKTQIQ 117 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G----~~~~~~~v~i~~~~-~~~~~~li~ 117 (128)
.+.+||.|.|..+ +-..+-..|++++||+..+++. +++..+- ...+ .+++|+.++ +..++..+.
T Consensus 72 ~~~lVi~at~~~~--~n~~i~~~a~~~~i~vn~~d~~-e~~~~~~pa~~~~~~-l~iaIsT~Gksp~la~~ir 140 (457)
T 1pjq_A 72 SCWLAIAATDDDT--VNQRVSDAAESRRIFCNVVDAP-KAASFIMPSIIDRSP-LMVAVSSGGTSPVLARLLR 140 (457)
T ss_dssp TCSEEEECCSCHH--HHHHHHHHHHHTTCEEEETTCT-TSSSEECCEEEEETT-EEEEEECTTSCHHHHHHHH
T ss_pred CccEEEEcCCCHH--HHHHHHHHHHHcCCEEEECCCc-ccCceEeeeEEEeCC-eEEEEECCCCChHHHHHHH
Confidence 4678999888753 4578899999999997666654 4443221 1223 256776555 334444433
No 70
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=59.01 E-value=28 Score=22.96 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTR 97 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~ 97 (128)
.+..+.++...+.+|.|..|. +. .+..+++++++++-. .+...++.+..|...
T Consensus 59 ~~~~~~~~~~~~~vv~vs~d~-~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 112 (163)
T 3gkn_A 59 NALLPEFDKAGAKILGVSRDS-VK----SHDNFCAKQGFAFPLVSDGDEALCRAFDVIK 112 (163)
T ss_dssp HHHHHHHHHTTCEEEEEESSC-HH----HHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEEEEEeCCC-HH----HHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence 334444555568899999883 33 334556677777643 445568999998854
No 71
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=58.58 E-value=6.3 Score=30.15 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=34.7
Q ss_pred CccccCCCC-hhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc-eeEEEEecCCChh
Q 033058 7 NPKAYPLAD-SNLTITILDLVQQAANYKQLKKGANEATKTLNRGI-SEFIVMAADTEPL 63 (128)
Q Consensus 7 ~p~~~P~~~-~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~k-akLVilA~D~~p~ 63 (128)
.||..|+.+ +++...+.++.+.|+.+-.+..=..++..-+++.+ +-|--+..|..|.
T Consensus 55 i~F~~~~~~~~~~r~~lV~m~~~A~~~l~l~~l~~ei~~ll~~~~~~~LAT~~~~G~P~ 113 (259)
T 3gas_A 55 IEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKEGFDSVCLATLHPNGHVV 113 (259)
T ss_dssp EECSSCCCCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSEEEEEEECTTSCEE
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhCCEEEEEeeCcCCCEE
Confidence 588889854 78899999999999887555533334444444322 2222333444454
No 72
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=57.94 E-value=35 Score=21.98 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=33.2
Q ss_pred HHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHhCCCC
Q 033058 46 LNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTR 97 (128)
Q Consensus 46 i~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~ 97 (128)
.....+.++.+..|.++. ..+..+.+++++++- ......++.+..|...
T Consensus 57 ~~~~~~~vv~v~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 57 YKNKNFQVLAVAQPIDPI---ESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp GGGTTEEEEEEECTTSCH---HHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred hccCCeEEEEEecCCCCH---HHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 333447777777665443 556677888899864 3455678999999864
No 73
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=57.59 E-value=37 Score=24.10 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=37.9
Q ss_pred HHHHHHHHcCceeEEEEecCCCh---hhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEP---LEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTR 97 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p---~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~ 97 (128)
.+..+..+...+.+|.|..|-.. .+....+..+++++++++-. .+...++.+..|...
T Consensus 82 ~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~ 143 (218)
T 3u5r_E 82 AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAAC 143 (218)
T ss_dssp HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCE
T ss_pred HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCC
Confidence 34444444444777777776321 13567777888888888744 355578999999874
No 74
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=56.47 E-value=14 Score=26.50 Aligned_cols=49 Identities=8% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCccccHHHH-HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 33 KQLKKGANEA-TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 33 g~lv~G~~~v-~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++++ .++. .+.|++-+--++++.. +...+-.+.+..++++ +||++...
T Consensus 19 a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~ 68 (174)
T 1ytl_A 19 ATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATG 68 (174)
T ss_dssp CEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEET
T ss_pred ceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcc
Confidence 34555 7777 8899998888888888 8644467889999999 99998763
No 75
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=56.42 E-value=21 Score=27.43 Aligned_cols=64 Identities=6% Similarity=0.029 Sum_probs=39.7
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhC---CCCEEEeCCHHHHhH-----HhCCCCceEEEEEecCC-chHHHHHHH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDK---NVPYVFVPSKQALGR-----ACGVTRPVIACSVTSNE-ASQLKTQIQ 117 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~---~IP~~~~~sk~eLG~-----a~G~~~~~~~v~i~~~~-~~~~~~li~ 117 (128)
.+.+||.|.|. +. +-..+-..|+++ ++|+..+++. ++.. .+-+ -+...++|..++ +..++..+.
T Consensus 106 ~adlViaat~d-~~-~n~~I~~~Ar~~f~~~i~VNvvd~p-el~~f~~Pa~~~~-g~~l~IaIST~Gksp~lA~~ir 178 (274)
T 1kyq_A 106 AWYIIMTCIPD-HP-ESARIYHLCKERFGKQQLVNVADKP-DLCDFYFGANLEI-GDRLQILISTNGLSPRFGALVR 178 (274)
T ss_dssp CEEEEEECCSC-HH-HHHHHHHHHHHHHCTTSEEEETTCG-GGBSEECCEEEEE-TTTEEEEEEESSSCHHHHHHHH
T ss_pred CeEEEEEcCCC-hH-HHHHHHHHHHHhcCCCcEEEECCCc-ccCeeEeeeEEEe-CCCEEEEEECCCCCcHHHHHHH
Confidence 57899999985 43 568899999998 8888766654 3333 2111 120256776444 445554443
No 76
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=55.55 E-value=42 Score=22.22 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCCC
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTR 97 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~ 97 (128)
..+..+...+.+|.|..|. + ..+..+++++++++-.+ +...++.+..|...
T Consensus 55 ~~~~~~~~~v~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (161)
T 3drn_A 55 NWDLLKDYDVVVIGVSSDD-I----NSHKRFKEKYKLPFILVSDPDKKIRELYGAKG 106 (161)
T ss_dssp THHHHHTTCEEEEEEESCC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred HHHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence 3444554458888888874 3 34566778889987544 45678999999863
No 77
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=55.07 E-value=11 Score=29.80 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=32.3
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..+.+-..+.-.+|++++..|. +.+..+|++++||+....
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 4555666788899999999876 677899999999987643
No 78
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=54.58 E-value=7.3 Score=29.49 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.1
Q ss_pred CccccCCCChhHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc-eeEEEEecCCChh
Q 033058 7 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGI-SEFIVMAADTEPL 63 (128)
Q Consensus 7 ~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv~G~~~v~kai~~~k-akLVilA~D~~p~ 63 (128)
.||..|+-.+++.+.+.++.+.|+.+..+-.=..++...+++.+ +-|--+..|..|.
T Consensus 56 i~F~~~~~~~~~r~~lv~m~~~a~~~~d~~~l~~e~~~ll~~~~~~~LAT~~~dG~P~ 113 (251)
T 3swj_A 56 VEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVALATLNANGEVV 113 (251)
T ss_dssp EECSSCCCTTTHHHHHHHHHHHHSSSCCCSHHHHHHHHHHHTCSEEEEEEECTTSCEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHhccccCChhhHHHHHHHHHhhCCEEEEEEECCCCCEE
Confidence 58899996689999999999988888766666667777776654 3344444555553
No 79
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=54.32 E-value=34 Score=26.09 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCE-EEeCCHHHHhHHhCCCCceEEEEEecCC
Q 033058 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY-VFVPSKQALGRACGVTRPVIACSVTSNE 108 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~sk~eLG~a~G~~~~~~~v~i~~~~ 108 (128)
+..-..++..+..-|--.++++..|.++. ....+...|++.|+.+ +.+.|.+|+-++. ..++..++++..+
T Consensus 121 fiid~~qv~~A~~~GAD~VlLi~a~l~~~-~l~~l~~~a~~lGl~~lvev~t~ee~~~A~--~~Gad~IGv~~r~ 192 (272)
T 3qja_A 121 FVVQPYQIHEARAHGADMLLLIVAALEQS-VLVSMLDRTESLGMTALVEVHTEQEADRAL--KAGAKVIGVNARD 192 (272)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEEGGGSCHH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHTCSEEEEESBC
T ss_pred cccCHHHHHHHHHcCCCEEEEecccCCHH-HHHHHHHHHHHCCCcEEEEcCCHHHHHHHH--HCCCCEEEECCCc
Confidence 33444578888888866666668888876 5678889999999975 5688999998875 3345567887543
No 80
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=54.25 E-value=44 Score=22.03 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCHHHHhHHhCCCCce------EEEEEecCC-----
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPV------IACSVTSNE----- 108 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk~eLG~a~G~~~~~------~~v~i~~~~----- 108 (128)
+..+.++... .+|.|..|. +. .+..+++++++++-.+ +...++.+..|....- ++..| ..+
T Consensus 60 ~~~~~~~~~~-~vv~is~d~-~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 60 DNYQELKEYA-AVFGLSADS-VT----SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp HHHHHHTTTC-EEEEEESCC-HH----HHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCC-cEEEEeCCC-HH----HHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEE
Confidence 3334444333 788888873 32 3455667788876544 4456899999886421 12333 222
Q ss_pred ------chHHHHHHHHHHHHHhhhh
Q 033058 109 ------ASQLKTQIQQLKDAIEKLL 127 (128)
Q Consensus 109 ------~~~~~~li~~i~~~~~~~~ 127 (128)
.....+.+++++..+.+|.
T Consensus 133 ~~g~~~~~~~~~~~~~l~~~l~~l~ 157 (159)
T 2a4v_A 133 RVKISPEVSVNDAKKEVLEVAEKFK 157 (159)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCccccHHHHHHHHHHHHHHhh
Confidence 1344666777777776653
No 81
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=53.28 E-value=42 Score=21.56 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHhCCCC
Q 033058 46 LNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTR 97 (128)
Q Consensus 46 i~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~ 97 (128)
.....+.++.+..|.+ ....+..+.+++++++- ......++.+..|...
T Consensus 57 ~~~~~~~~v~v~~d~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 57 MAGKPFRMLCVSIDEG---GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTTSSEEEEEEECCTT---HHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred hccCCeEEEEEEcCCc---chHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 3333466666666654 23556677777777763 3455678999998864
No 82
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=52.37 E-value=26 Score=22.72 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=28.7
Q ss_pred HHHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 41 EATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 41 ~v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+.++|++-+ -.|.|++.|... ...|+.+|++.|-.+...
T Consensus 42 ~tkkaL~~l~~Ge~L~Vl~dd~~a---~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 42 ETKRALQNMKPGEILEVWIDYPMS---KERIPETVKKLGHEVLEI 83 (98)
T ss_dssp HHHHHHHTCCTTCEEEEEESSCTH---HHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEEE
Confidence 4556666533 248888888754 488999999999887654
No 83
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=50.91 E-value=35 Score=23.73 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+++.+.|++-+--++++..-+......+.+..++++.++|++...
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 3455566655555555555555433467899999999999998753
No 84
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=49.67 E-value=49 Score=21.27 Aligned_cols=48 Identities=8% Similarity=0.136 Sum_probs=30.3
Q ss_pred HHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHhCCCC
Q 033058 46 LNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTR 97 (128)
Q Consensus 46 i~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~ 97 (128)
.....+.++.+..|.++. .+..+.+++++++- ......++.+..|...
T Consensus 55 ~~~~~v~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 103 (151)
T 2f9s_A 55 FKSQGVEIVAVNVGESKI----AVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP 103 (151)
T ss_dssp HGGGTEEEEEEEESCCHH----HHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred hccCCeEEEEEECCCCHH----HHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence 333357788887776654 34455666677653 3344568889988864
No 85
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=49.55 E-value=53 Score=21.56 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=32.4
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCH---HHHhHHhCCC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSK---QALGRACGVT 96 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk---~eLG~a~G~~ 96 (128)
..+.+|.|.-|-... ....+..++++++.++..+ ++. .++.+.+|..
T Consensus 63 ~~v~vv~is~d~~~d-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPERD-DVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTTC-CHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCCC-CHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 468888888885332 4566778888888887554 333 3677888875
No 86
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=49.43 E-value=39 Score=25.65 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=37.7
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCCH--HHHhHHhCCCCceEEEEEe--cC---CchHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPSK--QALGRACGVTRPVIACSVT--SN---EASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~sk--~eLG~a~G~~~~~~~v~i~--~~---~~~~~~~li~~i~~~~~~ 125 (128)
+.+|. -...+.+++++++|+++|+.+- ..+.+.+-...++-++.+. .. +..++.++++..-+++..
T Consensus 211 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~pl~~~~~~~~~Y~~~m~~n~~~l~~ 283 (286)
T 3gi1_A 211 EPSPR-QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPLEAAPSGNKTYLENLRANLEVLYQ 283 (286)
T ss_dssp -CCHH-HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCCSCSCCSSSCCHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEecccccCCCCcCCHHHHHHHHHHHHHH
Confidence 34566 5688899999999999997532 3344444333333333332 11 123677776666555543
No 87
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=49.29 E-value=35 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHcC--ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRG--ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~--kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+++++.++ ...++.+-.|- |. ..+..+|+++|||+..+.
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~-~~---~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDR-PG---AKVIERAARENVPAFVFS 60 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESS-TT---CHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCC-CC---cHHHHHHHHcCCCEEEeC
Confidence 34567777777 35665555553 11 245678999999998654
No 88
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=48.47 E-value=19 Score=23.94 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=25.3
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGR 91 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~ 91 (128)
.+.++++.-|++..+-.........+.++|++.+.+|.+|-.
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 466667766765432222222233446899999998887744
No 89
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=48.42 E-value=31 Score=26.12 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++++.+.++|++.+=.. |.+..+.+..+|++++++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 45667777656788888753221 223478899999999998764
No 90
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=48.29 E-value=59 Score=21.75 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=30.9
Q ss_pred EEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHh---CCCCceEEEEE
Q 033058 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC---GVTRPVIACSV 104 (128)
Q Consensus 54 VilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~---G~~~~~~~v~i 104 (128)
||+--..++. +..+|.+..+++|..+..+.|.+||...+ -+++.+.++.+
T Consensus 4 vivvfstdee-tlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvv 56 (134)
T 2l69_A 4 VIVVFSTDEE-TLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVV 56 (134)
T ss_dssp EEEECCCCHH-HHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEeCCHH-HHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEE
Confidence 4444444454 67778888888888888888877776542 34454444443
No 91
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=48.15 E-value=54 Score=24.58 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCc---eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLKKGANEATKTLNRGI---SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv~G~~~v~kai~~~k---akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+.+-+-+..-++.|.-+....+..+.+..++ .+.|+|.=|-.+.+....+..+.+++++|..++
T Consensus 31 ~~f~~ql~~L~~~gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~atfF 97 (268)
T 3vus_A 31 SALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWA 97 (268)
T ss_dssp HHHHHHHHHHHHTTCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCCEEEE
Confidence 4555667777788888999999999998875 366676666666656667778889999997654
No 92
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=48.08 E-value=34 Score=23.04 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
.........|..+.|+=+.|-+. ...+...+++.|+|+..+-+.
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~e~e---l~~l~~~a~~~gl~~~~i~DA 88 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVESEEE---LFKLKAEAEKLGLPNALIRDA 88 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH---HHHHHHHHHHTTCCEEEEECT
T ss_pred HHHHHHHHCCCcEEEEecCCHHH---HHHHHHHHHHCCCCEEEEEcC
Confidence 44555566788888888877533 467788889999998776544
No 93
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=47.98 E-value=7.7 Score=29.43 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=40.8
Q ss_pred ccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEe
Q 033058 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT 105 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~ 105 (128)
++.|.+.|..+++...+.-|++.++... .+. +..++|+..+...+.|-+..+...+--++++.
T Consensus 29 ~veG~~~v~eal~~~~i~~l~~~~~~~~-----~l~---~~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~ 91 (257)
T 2i6d_A 29 AVEGPKLVGEMLPFYRCRMLVGTAAMLR-----AVS---TPHDAEVVELPESFDFKRISTQTTPQPLMAVF 91 (257)
T ss_dssp EEESHHHHHHHGGGSCEEEEEEEHHHHH-----TSC---CCTTCEEEEECTTCCGGGTCCSSSCCSEEEEE
T ss_pred EEEcHHHHHHHHhcCCcCEEEEEcCchH-----HHH---HhcCCCEEEeChHHHHHHHhcCCCCCeEEEEE
Confidence 7899999999998844777888765422 111 15578876666537777777754322234444
No 94
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=47.09 E-value=31 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
.++..+++++.+.++|++.+=..| .+..+.+.++|++++++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 456667776657888887532222 12468889999999998764
No 95
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=46.99 E-value=77 Score=22.71 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=36.3
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC---C-------HHHHhHHhCCCCc
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP---S-------KQALGRACGVTRP 98 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~---s-------k~eLG~a~G~~~~ 98 (128)
-.+.|..=+.-|||......+.+..+. .++.+||++.+. + -..||+++|++.+
T Consensus 51 n~E~i~~l~PDlIi~~~~~~~~~~~~~----L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~~~ 113 (255)
T 3md9_A 51 NAEGILAMKPTMLLVSELAQPSLVLTQ----IASSGVNVVTVPGQTTPESVAMKINAVATALHQTEK 113 (255)
T ss_dssp CHHHHHTTCCSEEEEETTCSCHHHHHH----HHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHccCCCEEEEcCCcCchhHHHH----HHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCHHH
Confidence 467788888999998776654323333 356789998774 2 2468999998744
No 96
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=46.92 E-value=24 Score=23.13 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=31.9
Q ss_pred ccHHHHHHHH----HcCceeEEEEecCCChhhHHhhHHHHHHhCCCCE-EEeCCHHH
Q 033058 37 KGANEATKTL----NRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY-VFVPSKQA 88 (128)
Q Consensus 37 ~G~~~v~kai----~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~sk~e 88 (128)
...+++.+++ +++...++++.++.... +...+..+-+++-.|. +.++++..
T Consensus 36 ~~~ee~~~~~~~l~~~~digIIlIte~ia~~-i~~~i~~~~~~~~~P~IieIPs~~g 91 (102)
T 2i4r_A 36 TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKK-LPPVLRREIDEKVEPTFVSVGGTGG 91 (102)
T ss_dssp CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTT-SCHHHHTTTTTCCSSEEEEEC----
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHH-HHHHHHHHHhCCCccEEEEECCCCC
Confidence 3444444444 34578999999988876 6677666666667886 45777653
No 97
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=46.66 E-value=62 Score=21.59 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred ccccHHHHHHHHHc----CceeEEEEecCCChhhH----HhhHHHHHHhCCCCEEEeC----CHHHHhHHhCCCCceEEE
Q 033058 35 LKKGANEATKTLNR----GISEFIVMAADTEPLEI----LLHLPLLAEDKNVPYVFVP----SKQALGRACGVTRPVIAC 102 (128)
Q Consensus 35 lv~G~~~v~kai~~----~kakLVilA~D~~p~~~----~~~l~~lc~~~~IP~~~~~----sk~eLG~a~G~~~~~~~v 102 (128)
+-.|.....+.+.+ +..+.||+-.|..+++- .......++..+|++..++ +..+|-...+...+.
T Consensus 84 ~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia~~~~~~--- 160 (182)
T 1shu_X 84 IHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQV--- 160 (182)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHSSSGGGE---
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHhCCCCce---
Confidence 55566666666643 34688888888764321 2334556788999976553 567888877776543
Q ss_pred EEecCCchHHHHHHHHHHH
Q 033058 103 SVTSNEASQLKTQIQQLKD 121 (128)
Q Consensus 103 ~i~~~~~~~~~~li~~i~~ 121 (128)
.....+..++.+.+++|.+
T Consensus 161 ~~~~~~~~~L~~~~~~i~~ 179 (182)
T 1shu_X 161 FPVKGGFQALKGIINSILA 179 (182)
T ss_dssp EESSSTTHHHHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHHHHh
Confidence 2223345677777766654
No 98
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=45.84 E-value=18 Score=23.07 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=24.9
Q ss_pred EEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 55 VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 55 ilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
|+|.=.+. +..++...++++|||++.-. .|.+++-
T Consensus 20 VvAKG~~~--~A~~I~~~A~e~~VPi~e~~---~LAr~L~ 54 (83)
T 3bzy_B 20 VIETGKDA--KALQIIKLAELYDIPVIEDI---PLARSLD 54 (83)
T ss_dssp EEEEEETH--HHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred EEEEeCcH--HHHHHHHHHHHcCCCEEeCH---HHHHHHH
Confidence 44444433 68999999999999997654 5666654
No 99
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=45.17 E-value=43 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh-------hhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP-------LEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p-------~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++.++.+++..++++++..-..+ ..+-..+..+|++++++++-+.
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 445566676656787777532221 1245667889999999999875
No 100
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=44.35 E-value=72 Score=24.57 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=38.5
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC--HHHHhHHhC-----CCCceEEE--EEecCCc------hHHHHHHHHHHHHH
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS--KQALGRACG-----VTRPVIAC--SVTSNEA------SQLKTQIQQLKDAI 123 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G-----~~~~~~~v--~i~~~~~------~~~~~li~~i~~~~ 123 (128)
+.+|. -...+.+++++++|+++|+.+ ...+.+.+- +..++-++ ..+++-. .++.++++..-+++
T Consensus 229 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l 307 (313)
T 1toa_A 229 EASAH-DMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTI 307 (313)
T ss_dssp CCCHH-HHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHccchhhhcCCceeeeeeccCCCCCCCCccCHHHHHHHHHHHH
Confidence 44566 568888999999999998742 233444443 44443332 2244421 46777666655555
Q ss_pred hh
Q 033058 124 EK 125 (128)
Q Consensus 124 ~~ 125 (128)
..
T Consensus 308 ~~ 309 (313)
T 1toa_A 308 VA 309 (313)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 101
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=44.28 E-value=35 Score=26.17 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=29.0
Q ss_pred HHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.+++++.+.++|++..=..| .+-.+.+.++|+++++.++.
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 45666675677888887432222 22367788999999998764
No 102
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.85 E-value=64 Score=20.95 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe--CCHHHHhH
Q 033058 37 KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV--PSKQALGR 91 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~--~sk~eLG~ 91 (128)
..++.+++.++.+-.-||+.-+-++.++ ...|..-+++.+|.|-.. -+.+||-+
T Consensus 38 qdirdiiksmkdngkplvvfvngasqnd-vnefqneakkegvsydvlkstdpeeltq 93 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQND-VNEFQNEAKKEGVSYDVLKSTDPEELTQ 93 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHH-HHHHHHHHHHHTCEEEEEECCCHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCccccc-HHHHHHHHHhcCcchhhhccCCHHHHHH
Confidence 4567888888887778888888999985 788999999999988443 35666654
No 103
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=43.57 E-value=79 Score=21.89 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=30.2
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe-CCH---HHHhHHhCCC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV-PSK---QALGRACGVT 96 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~-~sk---~eLG~a~G~~ 96 (128)
+.+.+|.|..|-.. ++...+..++++++.++..+ ++. .++.+.+|..
T Consensus 77 ~~v~vv~Is~D~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~ 127 (200)
T 2b7k_A 77 ITLQPLFITCDPAR-DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp CCCEEEEEESCTTT-CCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred CceEEEEEECCCCC-CCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcE
Confidence 46888888888532 24556677888888876544 333 4566777765
No 104
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=43.37 E-value=16 Score=27.93 Aligned_cols=43 Identities=7% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCceeEEEEec--CCChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAA--DTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~--D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
..++.+++.+.+.++|++.. +..+. -.+.+.++|+++|++++.
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~-~l~~i~~l~~~~~~~li~ 205 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKL-DFARFRAIADSVGAKLMV 205 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCC-CHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcC-CHHHHHHHHHHcCCEEEE
Confidence 35566677655678888863 22333 457899999999998765
No 105
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=43.26 E-value=93 Score=23.06 Aligned_cols=69 Identities=16% Similarity=0.007 Sum_probs=41.2
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCC-------------cccc------HHHHHHH---HHcCceeEEEEecCCChhhHHh
Q 033058 10 AYPLADSNLTITILDLVQQAANYKQ-------------LKKG------ANEATKT---LNRGISEFIVMAADTEPLEILL 67 (128)
Q Consensus 10 ~~P~~~~~~~~~i~~lL~~a~~ag~-------------lv~G------~~~v~ka---i~~~kakLVilA~D~~p~~~~~ 67 (128)
.-|-.++.+++.+...++.....|- +-.. ...+.+. +.+..++.+++|.+..+. +
T Consensus 7 INPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~~~-l-- 83 (245)
T 3qvl_A 7 INPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGDPG-L-- 83 (245)
T ss_dssp ECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCTT-H--
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhH-H--
Confidence 3467778888877777765443331 1111 1112333 344569999999998775 4
Q ss_pred hHHHHHHhCCCCEEEe
Q 033058 68 HLPLLAEDKNVPYVFV 83 (128)
Q Consensus 68 ~l~~lc~~~~IP~~~~ 83 (128)
..+-+..+||++-+
T Consensus 84 --~~lr~~~~iPvigi 97 (245)
T 3qvl_A 84 --LAARELAQGPVIGI 97 (245)
T ss_dssp --HHHHHHCSSCEEEH
T ss_pred --HHHHHHcCCCEECc
Confidence 34556678999875
No 106
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=43.14 E-value=34 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
.........|..+.|+=+.|-+. ...+...+++.|+|+..+-+.
T Consensus 41 ~~~~~W~~~g~~kiVlk~~~e~~---l~~l~~~a~~~gl~~~~v~DA 84 (117)
T 1rlk_A 41 DVFNEWYDEGQRKIVVKVNDLDE---IMEIKRMADSMGIVNEIVQDR 84 (117)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH---HHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHCCCeEEEEecCCHHH---HHHHHHHHHHCCCCEEEEEeC
Confidence 44555556788888887777533 466778888999998666443
No 107
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=43.05 E-value=92 Score=23.62 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=62.3
Q ss_pred CccccCCCChhHHH--------------HHHHHHHHHHHcC-C---ccc---------cHHHHHHHHHcCceeEEEEecC
Q 033058 7 NPKAYPLADSNLTI--------------TILDLVQQAANYK-Q---LKK---------GANEATKTLNRGISEFIVMAAD 59 (128)
Q Consensus 7 ~p~~~P~~~~~~~~--------------~i~~lL~~a~~ag-~---lv~---------G~~~v~kai~~~kakLVilA~D 59 (128)
.|++.|+++-..-+ +++++++..++.. + ++. |...-.+...+--+.-|++ .|
T Consensus 53 iPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii-~D 131 (267)
T 3vnd_A 53 FPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLI-AD 131 (267)
T ss_dssp CCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEE-TT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEe-CC
Confidence 58999999855443 4567888777652 2 333 3333334443323444444 58
Q ss_pred CChhhHHhhHHHHHHhCCCCEEEe---CC-HHHHhHHhCCCCce-EE---EEEe---cCCchHHHHHHHHHHHH
Q 033058 60 TEPLEILLHLPLLAEDKNVPYVFV---PS-KQALGRACGVTRPV-IA---CSVT---SNEASQLKTQIQQLKDA 122 (128)
Q Consensus 60 ~~p~~~~~~l~~lc~~~~IP~~~~---~s-k~eLG~a~G~~~~~-~~---v~i~---~~~~~~~~~li~~i~~~ 122 (128)
..+. -...+...|+++++..+++ .| .+.+-++......- -+ .+++ .....++.+++++++..
T Consensus 132 lp~e-e~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~ 204 (267)
T 3vnd_A 132 VPVE-ESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEF 204 (267)
T ss_dssp SCGG-GCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTT
T ss_pred CCHh-hHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHh
Confidence 8776 4788999999999875532 23 35555554443321 11 1111 11123466677777654
No 108
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=42.80 E-value=19 Score=27.36 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCceeEEEEec-CC-ChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAA-DT-EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~-D~-~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
..++.+++.+.+.++|++.. +. ... -.+.+..+|++++++++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~-~l~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVV-DWAKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCC-CHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCcc-CHHHHHHHHHHcCCEEEE
Confidence 45667777766688888843 22 122 257889999999998765
No 109
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=42.77 E-value=47 Score=25.06 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=39.7
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCCH--HHHhHHhCCCCceEEEEEecCC------chHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPSK--QALGRACGVTRPVIACSVTSNE------ASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~sk--~eLG~a~G~~~~~~~v~i~~~~------~~~~~~li~~i~~~~~~ 125 (128)
+.+|. -...+..++++++|+++|+.+- ..+.+.+-...++-++.+ ++. ..++.++++..-+++..
T Consensus 209 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l-~~l~~~~~~~~~Y~~~m~~n~~~l~~ 281 (284)
T 3cx3_A 209 EPSPR-QLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTL-NPLESDPQNDKTYLENLEENMSILAE 281 (284)
T ss_dssp CCCSH-HHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEEC-CCSSSCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEe-cCcccCCCCcccHHHHHHHHHHHHHH
Confidence 44566 5688899999999999987522 344444444444433433 321 23677777766665544
No 110
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=42.57 E-value=35 Score=26.01 Aligned_cols=42 Identities=5% Similarity=-0.032 Sum_probs=33.9
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.++.+.+++.+++.||.-...+++ +.+. ++++.|+|++++.+
T Consensus 227 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~---ia~~~g~~v~~ld~ 268 (291)
T 1pq4_A 227 KQLIDTAKENNLTMVFGETQFSTK-SSEA---IAAEIGAGVELLDP 268 (291)
T ss_dssp HHHHHHHHTTTCCEEEEETTSCCH-HHHH---HHHHHTCEEEEECT
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHcCCeEEEEcC
Confidence 467778889999999999999887 5554 58889999988754
No 111
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=42.53 E-value=36 Score=25.52 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 19 TITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 19 ~~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
....+..|...++.|++. .+..++.+.+.......++.--..++......+..+|+++||.++-+
T Consensus 119 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 119 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEe
Confidence 345678888889999865 45677788877766655555444555434467889999999998765
No 112
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=42.50 E-value=38 Score=25.33 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHc-CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 42 ATKTLNR-GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 42 v~kai~~-~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
+...+.+ +++.-+|+..|... ...+...+.+.+||++.+.+
T Consensus 53 i~~~i~~~~~vDgiIi~~~~~~---~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 53 ARELFQGRDKPDYLMLVNEQYV---APQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHSSSCCSEEEEECCSSH---HHHHHHHHTTSCCEEEEEES
T ss_pred HHHHHhcCCCCCEEEEeCchhh---HHHHHHHHHhCCCcEEEEcC
Confidence 4445554 56766666654432 34556678889999988753
No 113
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=42.02 E-value=48 Score=22.01 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCCCEEEeCCHHHHhH---------HhCCCCce-EEEEEecCCchHHHHHHHHHHHHHh
Q 033058 76 KNVPYVFVPSKQALGR---------ACGVTRPV-IACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG~---------a~G~~~~~-~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
.++|++.+++|.+|-. .+. ..+. ..+-+--....++.++++.+...+.
T Consensus 134 ~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDALPVEMVRAVVD-PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TSSCEEEEEECTTSTTCCCHHHHHHHHC-TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcccccCHHHHHHHHH-hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 6899999888766532 222 1222 2233332233566666666555443
No 114
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=42.01 E-value=57 Score=19.83 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=18.4
Q ss_pred hhHHHHHHhCCCCEEEe--C-C---HHHHhHHhCC
Q 033058 67 LHLPLLAEDKNVPYVFV--P-S---KQALGRACGV 95 (128)
Q Consensus 67 ~~l~~lc~~~~IP~~~~--~-s---k~eLG~a~G~ 95 (128)
.+...+-+.++|||..+ . + +++|-+..|.
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~ 56 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGN 56 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC
Confidence 56677777888887554 2 2 3456666663
No 115
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=41.93 E-value=57 Score=27.51 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCc---cccHHHHHHHHH-------cCceeEEEEecCCChh--------------h------------
Q 033058 21 TILDLVQQAANYKQL---KKGANEATKTLN-------RGISEFIVMAADTEPL--------------E------------ 64 (128)
Q Consensus 21 ~i~~lL~~a~~ag~l---v~G~~~v~kai~-------~~kakLVilA~D~~p~--------------~------------ 64 (128)
++.+.++..+-+|.+ -.|...+..++. +...+++|++.|+.+. |
T Consensus 222 ~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt 301 (503)
T 3v4v_B 222 AFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYS 301 (503)
T ss_dssp HHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBG
T ss_pred HHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCCCccccceecCCCCCeEECCCCccc
Confidence 455555444444442 244566666652 2356999999998643 0
Q ss_pred --------HHhhHHHHHHhCCCCEEEeCCH------HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 65 --------ILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 65 --------~~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
....+.....++||..+|.-+. ++|...+.. ++++.+..+++++.++|.+....|.+
T Consensus 302 ~s~~~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsNiv~LI~~aY~~i~S 372 (503)
T 3v4v_B 302 RSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKLIPK----SAVGELSEDSSNVVQLIMDAYNSLSS 372 (503)
T ss_dssp GGGGSCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHHHTTSTT----CEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred cccccCCCCHHHHHHHHHhcCCeEEEEEcccchhHHHHHHHhCCC----ceeeEccccchhHHHHHHHHHHHhhe
Confidence 0233444455668876664333 466666543 36889999999999999988877754
No 116
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=41.86 E-value=56 Score=20.57 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=29.5
Q ss_pred HHHHHHcCceeEEEEe-----cCCChhhHHhhHHHHHHhCCCCEEEe--CC----HHHHhHHhCCC
Q 033058 42 ATKTLNRGISEFIVMA-----ADTEPLEILLHLPLLAEDKNVPYVFV--PS----KQALGRACGVT 96 (128)
Q Consensus 42 v~kai~~~kakLVilA-----~D~~p~~~~~~l~~lc~~~~IP~~~~--~s----k~eLG~a~G~~ 96 (128)
+.+.+.+.++. |+.. ..| |. -.....+.++++|+|..+ .. +++|-...|..
T Consensus 8 ~~~~i~~~~vv-vy~~g~~~~~~C-p~--C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 69 (109)
T 1wik_A 8 LKVLTNKASVM-LFMKGNKQEAKC-GF--SKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP 69 (109)
T ss_dssp HHHHHTTSSEE-EEESSTTTCCCS-ST--HHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC
T ss_pred HHHHhccCCEE-EEEecCCCCCCC-ch--HHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC
Confidence 44556555432 3444 466 32 456667778889998654 32 24677777754
No 117
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=41.80 E-value=40 Score=20.78 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 42 ATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 42 v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+.+++++-+ -.|.|++.|-.. ...++.+|+++|-.+...
T Consensus 27 ~kkal~~l~~G~~l~V~~dd~~a---~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 27 VRKTVRNMQPGETLLIIADDPAT---TRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHTSCTTCEEEEEECCTTH---HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEEE
Confidence 455555422 357778877644 588999999999887654
No 118
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=41.44 E-value=49 Score=24.71 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh------hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL------EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~------~~~~~l~~lc~~~~IP~~~ 82 (128)
..++.+++++.+.++|++.+=.+|. +-.+.+.++|++++++++.
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 4667777876778888875422221 2468888999999998764
No 119
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=41.39 E-value=27 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=28.5
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+||.+.|..+. +...+.+.|.++++|++..+
T Consensus 208 ~~DlVvd~~Dn~~~-~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 208 EADIWVVSADHPFN-LINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCSEEEECCCCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEecCChHH-HHHHHHHHHHHhCCCEEEEE
Confidence 46789999988664 67888999999999999765
No 120
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=41.32 E-value=64 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=21.8
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCE
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
++.+|.|..|-... ....+..+++++++++
T Consensus 69 ~~~vv~is~d~~~d-~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 69 DVRIISFSVDPEND-KPKQLKKFAANYPLSF 98 (174)
T ss_dssp CCEEEEEESCTTTC-CHHHHHHHHTTSCCCG
T ss_pred cEEEEEEEeCCCCC-CHHHHHHHHHHcCCCC
Confidence 47888888875322 4566778889999986
No 121
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=40.49 E-value=49 Score=22.53 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=45.6
Q ss_pred CceeEEEEecCCChh-hH--HhhHHHHHHhCCCCEEEe--CC-------HHHHhHHhCCCCceEEEEEecCCchHHHHHH
Q 033058 49 GISEFIVMAADTEPL-EI--LLHLPLLAEDKNVPYVFV--PS-------KQALGRACGVTRPVIACSVTSNEASQLKTQI 116 (128)
Q Consensus 49 ~kakLVilA~D~~p~-~~--~~~l~~lc~~~~IP~~~~--~s-------k~eLG~a~G~~~~~~~v~i~~~~~~~~~~li 116 (128)
+..+.||+-.|..++ +- .......+++.+|++..+ ++ ..+|-...+......+..+. +..++.+.+
T Consensus 109 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~--~~~~l~~~~ 186 (198)
T 1n3y_A 109 DAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE--DFDALKDIQ 186 (198)
T ss_dssp TSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES--SGGGGGGGH
T ss_pred CCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeC--CHHHHHHHH
Confidence 456888888887654 11 234456668899997654 33 57787777765433222332 346777777
Q ss_pred HHHHHHHh
Q 033058 117 QQLKDAIE 124 (128)
Q Consensus 117 ~~i~~~~~ 124 (128)
++|...|-
T Consensus 187 ~~i~~~ic 194 (198)
T 1n3y_A 187 NQLKEKIF 194 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhee
Confidence 77776654
No 122
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=40.47 E-value=27 Score=24.75 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=46.6
Q ss_pred HHHHHHHHHc-CceeEEEEecCCChhh--HHhhHHHHHHhCCCCEE--EeCCHHHHhHHhCCCCceEEEEEe-cCC----
Q 033058 39 ANEATKTLNR-GISEFIVMAADTEPLE--ILLHLPLLAEDKNVPYV--FVPSKQALGRACGVTRPVIACSVT-SNE---- 108 (128)
Q Consensus 39 ~~~v~kai~~-~kakLVilA~D~~p~~--~~~~l~~lc~~~~IP~~--~~~sk~eLG~a~G~~~~~~~v~i~-~~~---- 108 (128)
.....+.+++ +..++.++.+.++++. ..+.+....++.++|+. .++....+.++...-.++ .-. .+.
T Consensus 108 ~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v---~~~~~p~~~~~ 184 (209)
T 3cwq_A 108 LMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVV---SEVSDSKAGIA 184 (209)
T ss_dssp HHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCT---TTSSSTTHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCH---HHhCCccchhH
Confidence 3344444544 2344666777666541 34566666777888875 356666777765433222 111 222
Q ss_pred chHHHHHHHHHHHHHhhh
Q 033058 109 ASQLKTQIQQLKDAIEKL 126 (128)
Q Consensus 109 ~~~~~~li~~i~~~~~~~ 126 (128)
..+|.++.+++.+.+.++
T Consensus 185 ~~~~~~l~~el~~~~~~~ 202 (209)
T 3cwq_A 185 WSDYKATGKEIVEEILTL 202 (209)
T ss_dssp HHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 246777777776665543
No 123
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=40.41 E-value=45 Score=25.20 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 19 TITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 19 ~~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
....+..|...++.|++. ....++.+.+.......++.--..++......+..+|+++||.++-+
T Consensus 140 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (283)
T 3o0k_A 140 FMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAW 210 (283)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCcceEEeccCcHHHHHHHHHhCCCCeEEEEeecCcccCcHHHHHHHHHCCcEEEEe
Confidence 356778888889999864 35566777776554443343333444323457889999999998655
No 124
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=40.18 E-value=83 Score=21.17 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHcCceeEEEEecCCCh---hhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCC
Q 033058 46 LNRGISEFIVMAADTEP---LEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTR 97 (128)
Q Consensus 46 i~~~kakLVilA~D~~p---~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~ 97 (128)
.....+.+|.+..|... .+....+..+.+++++++-. .....++.+.+|...
T Consensus 75 ~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 130 (196)
T 2ywi_A 75 YMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAAC 130 (196)
T ss_dssp HGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCE
T ss_pred HHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCC
Confidence 33334677777766421 12456667777777777633 344568888888763
No 125
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=40.11 E-value=14 Score=32.31 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCc---cccHHHHHHHHH-------cCceeEEEEecCCChhh-------------------------
Q 033058 20 ITILDLVQQAANYKQL---KKGANEATKTLN-------RGISEFIVMAADTEPLE------------------------- 64 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~l---v~G~~~v~kai~-------~~kakLVilA~D~~p~~------------------------- 64 (128)
.++.+.++..+-+|.+ -.|...+..++. +...+|+|++.|+.+..
T Consensus 193 ~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~ 272 (687)
T 3k6s_B 193 NQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYK 272 (687)
T ss_dssp HHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCS
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCccccCCCccccceecCCCCccccCCCccc
Confidence 3344555544444442 135666777761 22579999999997530
Q ss_pred --------HHhhHHHHHHhCCCCEEEeCCH------HHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHHHHh
Q 033058 65 --------ILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 65 --------~~~~l~~lc~~~~IP~~~~~sk------~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
....+.....+++|..+|.-+. ++|-..++. +.++++..+++++.++|.+....|.
T Consensus 273 ~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i~~----s~v~~L~~dSsni~~li~~ay~~i~ 342 (687)
T 3k6s_B 273 RSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPK----SAVGELSEDSSNVVQLIKNAYNKLS 342 (687)
T ss_dssp SGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSS----CCEEECCTTCCSCGGGTTTHHHHHS
T ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhcCC----ceeeeeccccHHHHHHHHHHHHhhh
Confidence 0345666666778876665443 356666554 2467788888888888777666654
No 126
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=39.97 E-value=71 Score=20.65 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred HHHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 42 ATKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 42 v~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..+.+++|+--.++. +.|-.-.+....+...|++.+|++..++
T Consensus 72 i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 72 VIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 344445554222222 3444333344555566666777765543
No 127
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=39.94 E-value=73 Score=23.81 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC-----------------------------HHHHhHH
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS-----------------------------KQALGRA 92 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s-----------------------------k~eLG~a 92 (128)
-.+.|..=+.-|||......+. ..+. .++.|||++.+.. -..||++
T Consensus 76 n~E~i~~l~PDlIi~~~~~~~~-~~~~----L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~ 150 (326)
T 3psh_A 76 NIESLLALKPDVVFVTNYAPSE-MIKQ----ISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEV 150 (326)
T ss_dssp CHHHHHHTCCSEEEEETTCCHH-HHHH----HHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHccCCCEEEEeCCCChH-HHHH----HHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHH
Confidence 3566667778888887554332 3333 3577999987642 2579999
Q ss_pred hCCCCce
Q 033058 93 CGVTRPV 99 (128)
Q Consensus 93 ~G~~~~~ 99 (128)
+|++.++
T Consensus 151 lg~e~~A 157 (326)
T 3psh_A 151 FEKKQQG 157 (326)
T ss_dssp HTCHHHH
T ss_pred cCCHHHH
Confidence 9998654
No 128
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=39.80 E-value=33 Score=25.76 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHHHHhHHhCCCCceEEEEEecCCchHHHHHHH
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQ 117 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~ 117 (128)
.+++..++..| +.+|+. |. +-..+...|+++++|++ =+.|..|+-+|. +.++..+-+.......=.+.++
T Consensus 96 ~~~a~~Ai~AG-A~fIvs-----P~-~~~~vi~~~~~~gi~~ipGv~TptEi~~A~--~~Gad~vK~FPa~~~gG~~~lk 166 (232)
T 4e38_A 96 GEQALAAKEAG-ATFVVS-----PG-FNPNTVRACQEIGIDIVPGVNNPSTVEAAL--EMGLTTLKFFPAEASGGISMVK 166 (232)
T ss_dssp HHHHHHHHHHT-CSEEEC-----SS-CCHHHHHHHHHHTCEEECEECSHHHHHHHH--HTTCCEEEECSTTTTTHHHHHH
T ss_pred HHHHHHHHHcC-CCEEEe-----CC-CCHHHHHHHHHcCCCEEcCCCCHHHHHHHH--HcCCCEEEECcCccccCHHHHH
Confidence 68888888888 777763 43 34556778999999985 467999998884 4444456666533210124445
Q ss_pred HHHH
Q 033058 118 QLKD 121 (128)
Q Consensus 118 ~i~~ 121 (128)
.++.
T Consensus 167 al~~ 170 (232)
T 4e38_A 167 SLVG 170 (232)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5443
No 129
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=39.72 E-value=51 Score=27.50 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 40 NEATKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 40 ~~v~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
-+|.++|+-=..-++|+ |.+.-.. -...+-..|.++++|.+.+=+|
T Consensus 115 ~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 115 EDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRMRATPVMTFVNK 161 (548)
T ss_dssp HHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHHhCCceEEEEec
Confidence 47889998766444444 4444333 4567779999999998655443
No 130
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=39.71 E-value=84 Score=21.09 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=30.7
Q ss_pred eeEEEEecCCCh---hhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCCC
Q 033058 51 SEFIVMAADTEP---LEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVTR 97 (128)
Q Consensus 51 akLVilA~D~~p---~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~~ 97 (128)
+.+|.+..|... .+....+..+.+++++++-. .....++.+.+|...
T Consensus 66 ~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 116 (188)
T 2cvb_A 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR 116 (188)
T ss_dssp EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE
T ss_pred eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 666766665421 12456677778888887633 455678999998864
No 131
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=39.52 E-value=50 Score=24.16 Aligned_cols=42 Identities=2% Similarity=-0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+++++++++ ..++.+-.|-... ....+|+++|||+..+.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~----~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADA----FGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTC----HHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCch----HHHHHHHHcCCcEEEeC
Confidence 455666777774 4555444443221 23688999999998764
No 132
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=39.44 E-value=48 Score=22.19 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
........|..+.|+=+.|-+. ...+...+++.|+|+..+-+.
T Consensus 45 ~~~~W~~~g~~KiVlk~~~e~e---l~~l~~~a~~~gl~~~~i~DA 87 (120)
T 1xty_A 45 WLNEWLHQGQPKIIVKVNSLDE---IISRAKKAETMNLPFSIIEDA 87 (120)
T ss_dssp HHHHHHHTTCCEEEEEESSHHH---HHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHCCCcEEEEecCCHHH---HHHHHHHHHHCCCCEEEEEcC
Confidence 3444455788888888877533 467788889999998766443
No 133
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=39.12 E-value=49 Score=24.25 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHHcC------ceeEEEEecC-----CChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRG------ISEFIVMAAD-----TEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~------kakLVilA~D-----~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+++.++++++ +.++|++..- +-|.+..+.+.++|+++++.++.=+
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De 184 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 184 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEc
Confidence 45677777665 4788888643 1122347889999999999876533
No 134
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=38.84 E-value=91 Score=24.10 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=38.3
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC--HHHHhHHhCCCCceEEEEEe--cCC------chHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS--KQALGRACGVTRPVIACSVT--SNE------ASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~~v~i~--~~~------~~~~~~li~~i~~~~~~ 125 (128)
+.+|. -...+.++.++++|+++|+.+ ...+.+.+-+..++-++.++ +.- ..+|.++++..-+++..
T Consensus 236 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~ 311 (321)
T 1xvl_A 236 QFTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 311 (321)
T ss_dssp SCCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEEEEECSSCCCCSSSSCCSHHHHHHHHHHHHHT
T ss_pred CCCHH-HHHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCceeeeecCCccCCCCCCccCHHHHHHHHHHHHHH
Confidence 45666 568888999999999998742 23344444344443333222 331 13677777666555543
No 135
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=38.71 E-value=70 Score=19.92 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHcCceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEEeCCHHHHhHH--hCCCCceEEEEEecC-Cc
Q 033058 36 KKGANEATKTLNRGISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVFVPSKQALGRA--CGVTRPVIACSVTSN-EA 109 (128)
Q Consensus 36 v~G~~~v~kai~~~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~~~sk~eLG~a--~G~~~~~~~v~i~~~-~~ 109 (128)
.....+..+.+++....+||+--+.... ++.+.+.......++|++.+.+..+-... -....++.. .+..+ +.
T Consensus 36 ~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~-~l~kP~~~ 114 (140)
T 3grc_A 36 VHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVST-WLEKPIDE 114 (140)
T ss_dssp ECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCE-EECSSCCH
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCE-EEeCCCCH
Confidence 4556778888889999999997554332 33444443334568999888766544333 234444322 23333 33
Q ss_pred hHHHHHHHH
Q 033058 110 SQLKTQIQQ 118 (128)
Q Consensus 110 ~~~~~li~~ 118 (128)
.++.+.+..
T Consensus 115 ~~l~~~i~~ 123 (140)
T 3grc_A 115 NLLILSLHR 123 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455544444
No 136
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=38.68 E-value=72 Score=21.32 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHH----c--CceeEEEEecCCChhhHH----hhHHHHHHhCCCCEEEeC----CHHHHhHHhCCCCc
Q 033058 35 LKKGANEATKTLN----R--GISEFIVMAADTEPLEIL----LHLPLLAEDKNVPYVFVP----SKQALGRACGVTRP 98 (128)
Q Consensus 35 lv~G~~~v~kai~----~--~kakLVilA~D~~p~~~~----~~l~~lc~~~~IP~~~~~----sk~eLG~a~G~~~~ 98 (128)
+-.|.+...+.+. . +..+.||+-.|..+.+-. ......+++.+|+++.++ +..+|-...+...+
T Consensus 85 ~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA~~~~~ 162 (185)
T 3n2n_F 85 MHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSKDH 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTSSSGGG
T ss_pred HHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHhCCCCC
Confidence 5667777777662 2 246888888888765322 355667788999986654 56788887766544
No 137
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=38.65 E-value=47 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=33.0
Q ss_pred cHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 38 GANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..+.+++.+.++++.-||.+...+.......+..+|..++||.+.++
T Consensus 51 ~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 51 IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 35667777777778777766665543244567889999999998654
No 138
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=38.36 E-value=44 Score=25.69 Aligned_cols=66 Identities=6% Similarity=-0.022 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 19 TITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 19 ~~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
....+..|...+++|++. ....++.+++.......++.--..++......+..+|+++||.++-+.
T Consensus 153 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 224 (310)
T 3b3e_A 153 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAWS 224 (310)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHHcCCcceEeecCCCHHHHHHHHHhcCCCcceeeeeccCccCCHHHHHHHHHcCCEEEEec
Confidence 345677888888999864 456777888777766655555555554344678999999999987653
No 139
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=37.94 E-value=90 Score=21.16 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEE-eCCHHHHhHHhCCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVF-VPSKQALGRACGVT 96 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~-~~sk~eLG~a~G~~ 96 (128)
++..+.++...+.+|.|+.|. +. .+..+++++++++-. .+...++.++.|..
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~-~~----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDS-VK----SHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCC-HH----HHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCCC-HH----HHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 344455555668889998885 32 235566677777643 34557899999884
No 140
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=37.84 E-value=34 Score=25.35 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=27.8
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+..+||-|.|. .. ....+.+.|.++++|++...
T Consensus 118 ~~DvVi~~~d~-~~-~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 118 RADVVLDCTDN-MA-TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HCSEEEECCSS-HH-HHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEECCCC-HH-HHHHHHHHHHHhCCCEEEEe
Confidence 47899999994 54 68899999999999998854
No 141
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=37.46 E-value=53 Score=24.92 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..++.+.+++.+++.||.-...+++ +.+ .++++.|+|++.+.
T Consensus 217 l~~l~~~ik~~~v~~if~e~~~~~~-~~~---~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 217 LKEIQDFVKEYNVKTIFAEDNVNPK-IAH---AIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCTH-HHH---HHHHTTTCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChH-HHH---HHHHHhCCeEEEec
Confidence 3467788889999999999998887 554 56899999998764
No 142
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=37.43 E-value=32 Score=27.90 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=43.2
Q ss_pred HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC-CHHHHhHHhCCCCceEEEEEecCCchHHHHHHHHHHH
Q 033058 43 TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP-SKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKD 121 (128)
Q Consensus 43 ~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~-sk~eLG~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~ 121 (128)
.+.+++-+++-|+||.|.++. .+.+..+-...+|+++... +...+-.++.-.-. ..|-+ ..+.|..-+.+-|+
T Consensus 272 k~~vk~~~lksVFIATDa~~~--~~ELk~~L~~~~v~vv~~~pe~a~ID~~I~~~A~---~FIGN-~~SSFSa~I~rERd 345 (362)
T 3zy2_A 272 VEKVGSIGAKSVFVASDKDHM--IDEINEALKPYEIEAHRQEPDDMYTSLAIMGRAD---LFVGN-CVSTFSHIVKRERD 345 (362)
T ss_dssp HHHHHHHTCSEEEEEESSCCC--HHHHHHHHGGGTCCEECCSSCCHHHHHHHHHHSS---EEEEC-TTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEecCCHHH--HHHHHHHhhccCceEEEeCCchhHHHHHHHHhCC---EeecC-ccccccHHHHHHHH
Confidence 333344479999999999873 5777776676789887653 33333333322222 23333 34677776666554
No 143
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=36.90 E-value=50 Score=25.11 Aligned_cols=65 Identities=6% Similarity=-0.040 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....++.+++.....+..++--..++......+..+|+++||.++-+.
T Consensus 145 ~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 215 (312)
T 1zgd_A 145 KGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFS 215 (312)
T ss_dssp HHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHhCCCCceEEeeecCcccCCHHHHHHHHHcCCEEEEec
Confidence 45777888888999864 456677777766655555554455554334678899999999987654
No 144
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=36.46 E-value=1.2e+02 Score=23.43 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHHHHcCCcc----ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCC
Q 033058 3 GEAVNPKAYPLADSNLTITILDLVQQAANYKQLK----KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV 78 (128)
Q Consensus 3 ~~~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv----~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~I 78 (128)
|+-..|-+.|+..++-.+++..+++..+..+-.+ +=.+....+++.|.. +=+|++.. .-..+..++.++++
T Consensus 73 geSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT~~~~Va~aAl~aGa~----iINdVsg~-~d~~m~~v~a~~~~ 147 (294)
T 2dqw_A 73 AESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAH----LLNDVTGL-RDERMVALAARHGV 147 (294)
T ss_dssp CC-----------CCHHHHHHHHHHHHHTTCSCEEEECSCHHHHHHHHHHTCS----EEECSSCS-CCHHHHHHHHHHTC
T ss_pred CCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhCCC----EEEECCCC-CChHHHHHHHHhCC
Confidence 4556677788877888889999999877653222 344556677777754 33777754 34567888999999
Q ss_pred CEEEeCC
Q 033058 79 PYVFVPS 85 (128)
Q Consensus 79 P~~~~~s 85 (128)
|+|....
T Consensus 148 ~vVlmh~ 154 (294)
T 2dqw_A 148 AAVVMHM 154 (294)
T ss_dssp EEEEECC
T ss_pred CEEEEcC
Confidence 9988664
No 145
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=36.39 E-value=27 Score=27.37 Aligned_cols=35 Identities=0% Similarity=0.069 Sum_probs=28.6
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
+..+||.+.|. .. ....+..+|.++++|++..++.
T Consensus 125 ~~dvVv~~~d~-~~-~r~~ln~~~~~~~ip~i~~~~~ 159 (346)
T 1y8q_A 125 QFDAVCLTCCS-RD-VIVKVDQICHKNSIKFFTGDVF 159 (346)
T ss_dssp TCSEEEEESCC-HH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEcCCC-HH-HHHHHHHHHHHcCCCEEEEeec
Confidence 47899999886 43 6788999999999999987543
No 146
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=36.25 E-value=57 Score=24.85 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. .+..++.+++.......+++=-..++..-...+..+|+++||.++-+.
T Consensus 132 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 202 (317)
T 1qwk_A 132 EDVWRQFDAVYKAGLAKAVGVSNWNNDQISRALALGLTPVHNSQVELHLYFPQHDHVDFCKKHNISVTSYA 202 (317)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHTTCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCccceecceeccccCcHHHHHHHHHcCCEEEEec
Confidence 45677788888999864 456677777776665555554445554233678899999999987543
No 147
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=35.78 E-value=87 Score=20.51 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=19.8
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEE-EeCCHH
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQ 87 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~sk~ 87 (128)
+...+|++.++.... +...+..+-.....|.+ .++|+.
T Consensus 45 ~digIIlIte~~a~~-i~~~i~~~~~~~~~P~Il~IPs~~ 83 (109)
T 2d00_A 45 GGYALVAVDEALLPD-PERAVERLMRGRDLPVLLPIAGLK 83 (109)
T ss_dssp CCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEEEEESCGG
T ss_pred CCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEEEEECCCc
Confidence 456666666666554 44444444444555643 345443
No 148
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=35.68 E-value=42 Score=25.98 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....++.+.+.......+++--..++..-...+..+|+++||.++-+.
T Consensus 157 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 227 (335)
T 3h7u_A 157 PSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAYS 227 (335)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHHHCCCEEEEec
Confidence 45778888889999864 456677777777666655555555554334678899999999987553
No 149
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.66 E-value=54 Score=20.85 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHcCceeEEEEec------CCChhhHHhhHHHHHHhCCCCEEEeC---C---HHHHhHHhCCC
Q 033058 43 TKTLNRGISEFIVMAA------DTEPLEILLHLPLLAEDKNVPYVFVP---S---KQALGRACGVT 96 (128)
Q Consensus 43 ~kai~~~kakLVilA~------D~~p~~~~~~l~~lc~~~~IP~~~~~---s---k~eLG~a~G~~ 96 (128)
.+.++++ +++|... .| | +-.+...+-++++|||..+. + +++|-...|..
T Consensus 12 ~~~i~~~--~Vvvy~k~t~~~p~C-p--~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~ 72 (109)
T 3ipz_A 12 EKLVNSE--KVVLFMKGTRDFPMC-G--FSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWP 72 (109)
T ss_dssp HHHHTSS--SEEEEESBCSSSBSS-H--HHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCS
T ss_pred HHHHccC--CEEEEEecCCCCCCC-h--hHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCC
Confidence 3444444 4555555 46 4 35777777788899986542 2 34666666654
No 150
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=35.62 E-value=24 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=25.4
Q ss_pred EEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCC
Q 033058 55 VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95 (128)
Q Consensus 55 ilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 95 (128)
|+|.=.+. +..++...++++|||++.-. .|.+++-.
T Consensus 20 VvAKG~~~--~A~~I~e~A~e~gVPi~e~~---~LAr~Ly~ 55 (93)
T 2vt1_B 20 ISLIETNQ--CALAVRKYANEVGIPTVRDV---KLARKLYK 55 (93)
T ss_dssp EEEEEEHH--HHHHHHHHHHHTTCCEEECH---HHHHHHHH
T ss_pred EEEEeCcH--HHHHHHHHHHHcCCCEEECH---HHHHHHHH
Confidence 44444433 68999999999999997654 56666553
No 151
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=35.37 E-value=47 Score=25.05 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=34.3
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
.++.+.+++.+++.||.-...+++ +.+. ++++.|+|++.+...
T Consensus 216 ~~l~~~ik~~~v~~if~e~~~~~~-~~~~---ia~~~g~~v~~l~~l 258 (284)
T 3cx3_A 216 TEIQEFVKTYKVKTIFTESNASSK-VAET---LVKSTGVGLKTLNPL 258 (284)
T ss_dssp HHHHHHHHHTTCCCEEECSSSCCH-HHHH---HHSSSSCCEEECCCS
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcH-HHHH---HHHHcCCeEEEecCc
Confidence 467788899999999999998887 5444 589999999877543
No 152
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=35.34 E-value=45 Score=25.71 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...+++|++. ....++.+++...+...++.--..+|......+..+|+++||.++-+
T Consensus 155 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~c~~~gI~v~ay 224 (334)
T 3krb_A 155 ADTWRAMEQLVEEGLVKHIGVSNYTVPLLADLLNYAKIKPLVNQIEIHPWHPNDATVKFCLDNGIGVTAY 224 (334)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhCCCceEEeeeecCcccccHHHHHHHHHcCCEEEEE
Confidence 45678888888999864 45677778887776655555444555433467899999999998654
No 153
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=35.07 E-value=56 Score=24.89 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..+...+++|++. ....++.+++.....+.+++=-..++......+..+|+++||.++-+.
T Consensus 148 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 218 (322)
T 1mi3_A 148 LETWKALEKLVAAGKIKSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQPKLIEFAQKAGVTITAYS 218 (322)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCcCEEEEcCCCHHHHHHHHHhCCCCceEeecccCcCcCcHHHHHHHHHcCCEEEEEC
Confidence 45677788888999864 456778888877665555544445553223578899999999987654
No 154
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=34.91 E-value=72 Score=24.31 Aligned_cols=65 Identities=5% Similarity=-0.029 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. .+..++.+++.......++.--..+|..-...+..+|+++||.++-+.
T Consensus 137 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 207 (298)
T 3up8_A 137 AERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQVEYHPYLDQTKVLQTARRLGMSLTSYY 207 (298)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCEEEEEEECBTTBCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCccEEEEcCCCHHHHHHHHHhCCCCceEEEEecccccccHHHHHHHHHCCCEEEEEC
Confidence 44667788888999864 456777888877666677666555554334678999999999987653
No 155
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=34.79 E-value=72 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=14.3
Q ss_pred HHHHHHhCCCCEEEeCCHHHH
Q 033058 69 LPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 69 l~~lc~~~~IP~~~~~sk~eL 89 (128)
+...+...++|++.+++|.+|
T Consensus 115 ~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 115 ILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp HHHHHTSSCCCEEEEEECTTC
T ss_pred HHHhcCCCCCcEEEEEECCCc
Confidence 334445678999888877664
No 156
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=34.52 E-value=60 Score=25.19 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=30.1
Q ss_pred HHHHHHHHc---CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNR---GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~---~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++.+++.+ ++.++|++..=.. +.+..+.+.++|++||++++.=
T Consensus 170 ~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 170 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 556667764 3688888853211 2235688999999999998753
No 157
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=34.52 E-value=1e+02 Score=20.48 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=33.9
Q ss_pred HHHHHHcCcee-EEEEecCCChhhHHhhHHHHHHhCCC--CEEEe-CCHHHHhHHhCCC
Q 033058 42 ATKTLNRGISE-FIVMAADTEPLEILLHLPLLAEDKNV--PYVFV-PSKQALGRACGVT 96 (128)
Q Consensus 42 v~kai~~~kak-LVilA~D~~p~~~~~~l~~lc~~~~I--P~~~~-~sk~eLG~a~G~~ 96 (128)
..+.++...+. +|.|+.|. +. .+..+++++++ ++-.+ +...++.++.|..
T Consensus 62 ~~~~~~~~~v~~vv~Is~d~-~~----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 62 KAGELKSKGVTEILCISVND-PF----VMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHTTCCCEEEEESSC-HH----HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCCEEEEEECCC-HH----HHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 33444445688 99999884 32 34567788888 77554 4457899999876
No 158
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=34.45 E-value=27 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHcCceeEEEEecCCCh-----------hhHHhhHHHHHHhCCCCEEEeC
Q 033058 37 KGANEATKTLNRGISEFIVMAADTEP-----------LEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA~D~~p-----------~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...++.++.+++..++++++..-..| ..+-..+..+|++++++++-+.
T Consensus 117 ~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~ 175 (216)
T 3rjt_A 117 DTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQ 175 (216)
T ss_dssp HHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcH
Confidence 34455666776667888888521111 1245667788999999998764
No 159
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=34.35 E-value=99 Score=21.95 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=35.7
Q ss_pred ChhHHHHHHHH-HHHHHHcCC-cc--c-c-----HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 15 DSNLTITILDL-VQQAANYKQ-LK--K-G-----ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 15 ~~~~~~~i~~l-L~~a~~ag~-lv--~-G-----~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+......+++- -..+.+.|. +. . . ..+..+.+..+++.-+|+.....+ .....+.+.+||++.++
T Consensus 18 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 18 DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNP-----QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCH-----HHHHHHHTTSSCEEEES
T ss_pred CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcH-----HHHHHHHHCCCCEEEEe
Confidence 44455555554 444555664 11 1 1 234566666677655555443322 23445667899999886
Q ss_pred C
Q 033058 85 S 85 (128)
Q Consensus 85 s 85 (128)
+
T Consensus 93 ~ 93 (276)
T 3jy6_A 93 R 93 (276)
T ss_dssp C
T ss_pred c
Confidence 5
No 160
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=34.31 E-value=59 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. .+..+..+++.....+.++.--..++.+....+..+|+++||.++-+.
T Consensus 123 ~~~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 193 (281)
T 1vbj_A 123 IDTWKAFEKLYADKKVRAIGVSNFHEHHIEELLKHCKVAPMVNQIELHPLLNQKALCEYCKSKNIAVTAWS 193 (281)
T ss_dssp HHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTSCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCccEEEeeCCCHHHHHHHHHhCCCCceeeeEEeccccCCHHHHHHHHHcCCEEEEec
Confidence 45777888888999854 456677777766555444443344443233578999999999986543
No 161
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.26 E-value=87 Score=22.32 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHH-HHHHHcCC-cc---cc-----HHHHHHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 14 ADSNLTITILDLV-QQAANYKQ-LK---KG-----ANEATKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 14 ~~~~~~~~i~~lL-~~a~~ag~-lv---~G-----~~~v~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+......+++-+ ..|.+.|. +. .+ ..+..+.+..+++.-+|+ ..|.+. .......+.+.+||++.
T Consensus 18 ~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 18 DKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVY---IGSAIEEAKKAGIPVFA 94 (293)
T ss_dssp SCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTT---THHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH---HHHHHHHHHHcCCCEEE
Confidence 3444555555544 44555664 11 11 224455555566654444 444332 23344566778999998
Q ss_pred eCC
Q 033058 83 VPS 85 (128)
Q Consensus 83 ~~s 85 (128)
+++
T Consensus 95 ~~~ 97 (293)
T 3l6u_A 95 IDR 97 (293)
T ss_dssp ESS
T ss_pred ecC
Confidence 864
No 162
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=34.20 E-value=70 Score=20.52 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=21.5
Q ss_pred cCCChhhHHhhHHHHHHhCCCCEEEeC---C---HHHHhHHhCCC
Q 033058 58 ADTEPLEILLHLPLLAEDKNVPYVFVP---S---KQALGRACGVT 96 (128)
Q Consensus 58 ~D~~p~~~~~~l~~lc~~~~IP~~~~~---s---k~eLG~a~G~~ 96 (128)
..| |. -.+...+-++++|||..+. + +++|-+..|..
T Consensus 29 ~~C-p~--C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~ 70 (111)
T 3zyw_A 29 PRC-GF--SKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWP 70 (111)
T ss_dssp BSS-HH--HHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred Ccc-hh--HHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCC
Confidence 455 43 5666777788888886542 2 24555555643
No 163
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=34.18 E-value=46 Score=26.91 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHh
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG 90 (128)
.+...+++-.+-++++ |++..+....+....++.++|++.+.+|.++-
T Consensus 106 ~~~~~l~~aD~vllVv--D~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 106 KARRVFYRADCGILVT--DSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp HHHHHHTSCSEEEEEC--SSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred HHHHHHhcCCEEEEEE--eCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 3455565555555555 44433345677777888899999999887653
No 164
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=34.10 E-value=73 Score=22.90 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=22.7
Q ss_pred HHHHHcCcee-EEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISE-FIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kak-LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++.+...++. +++.+.|.+ . .......+.+.+||++.+++
T Consensus 50 i~~l~~~~vdgiii~~~~~~-~--~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPK-L--GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGG-G--HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEeCCCch-h--hHHHHHHHHHCCCcEEEeCC
Confidence 3334444454 444444442 2 34445567788999998873
No 165
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.08 E-value=48 Score=21.35 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 37 KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+..++...+ ..+-+|+.+.+.... .+++...+..+++|++.+..
T Consensus 40 ~~~~~~~~~~--~~~D~Ii~t~~l~~~--~~~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 40 IAETRLSEVV--DRFDVVLLAPQSRFN--KKRLEEITKPKGIPIEIINT 84 (109)
T ss_dssp ECSTTHHHHT--TTCSEEEECSCCSSH--HHHHHHHHHHHTCCEEECCH
T ss_pred ecHHHHHhhc--CCCCEEEECCccHHH--HHHHHHHhcccCCCEEEECh
Confidence 3555555543 568999999999765 68888888889999877664
No 166
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=34.03 E-value=65 Score=24.24 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...++.|++. ....+..+++........+.=-..++.+....+..+|+++||.++-+
T Consensus 126 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 195 (283)
T 2wzm_A 126 VDSWGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIELHPLLNQAALREVNAGYNIVTEAY 195 (283)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEEcCCCHHHHHHHHHhcCCCcccccccCCcccCCHHHHHHHHHCCCEEEEe
Confidence 45777888888999864 44566777776544433333333334322356889999999998654
No 167
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=34.02 E-value=58 Score=23.93 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHc--CceeEEEEecCCCh----h---hHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNR--GISEFIVMAADTEP----L---EILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~--~kakLVilA~D~~p----~---~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+.+++.+++ .++.+||++.|... . .+.+.+..+.+..++|++.+.
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~ 107 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVM 107 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeC
Confidence 4556666666 78999999999743 1 123334444455689987764
No 168
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=34.00 E-value=63 Score=24.11 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+..+.+.+..++++++|.+.... . -+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~-~--~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATA-V--VLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchhhH-H--HHHHHHHhCCCCEEee
Confidence 344566667779999999988653 1 2556667789999874
No 169
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=33.96 E-value=66 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=20.0
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+.+|. -...+.+++++++|+++|+.
T Consensus 222 eps~~-~l~~l~~~ik~~~v~~If~e 246 (312)
T 2o1e_A 222 EPSAA-SLAKLKTYAKEHNVKVIYFE 246 (312)
T ss_dssp CCCHH-HHHHHHHHTTSSCCCEEECS
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEe
Confidence 34566 56888899999999999975
No 170
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=33.89 E-value=72 Score=22.79 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.++.+..+++.-+|+..-..+. ...+...+.+.+||++.+++
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQY--TKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGG--THHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHhcCCCEEEECCCChHH--HHHHHHHHHHCCCeEEEEeC
Confidence 3455556666555555432222 23345556677999988764
No 171
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=33.87 E-value=74 Score=24.09 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
..+.+.+..++++++|.|+... --+..+-+..+||++-+
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~---~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATA---AALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCCCccH---HHHHHHHHhcCCCEEee
Confidence 4566777789999999988543 23566667789999874
No 172
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=33.61 E-value=70 Score=23.32 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCce--eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGIS--EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~ka--kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+++++.++.. .++.+-.|-.. ......|+++|||+..+.
T Consensus 15 ~~~~l~~l~~~~~~~~i~~Vvs~~~~----~~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 15 LQAIIDAIESGKVNASIELVISDNPK----AYAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHHTTSSCEEEEEEEESCTT----CHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCC----hHHHHHHHHcCCCEEEeC
Confidence 3456777777653 55555444321 224688999999998654
No 173
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=33.58 E-value=47 Score=25.65 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...+++|++. ....++.+++.......+++--..++..-...+..+|+++||.++-+
T Consensus 153 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 222 (331)
T 3h7r_A 153 TSTWKAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQQGLHELCKSKGVHLSGY 222 (331)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCHHHHHHHHHhcCCCceeEEeecccccCCHHHHHHHHHCCCEEEEe
Confidence 45778888889999864 45677788877776655555555555433467899999999998755
No 174
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=33.45 E-value=70 Score=21.18 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=30.4
Q ss_pred HHHHHHHHcCceeEEEEecCC----Ch---hhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMAADT----EP---LEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~----~p---~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++.++.+++..++++++.--. .+ ..+-..+..+|+++++|++-+..
T Consensus 93 ~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 93 TALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 345566666677888775322 11 12557778899999999987653
No 175
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=33.39 E-value=53 Score=20.56 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=17.3
Q ss_pred EEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 54 VilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
|+-+.+| |. -.....+.++++|||..+
T Consensus 20 vy~~~~C-p~--C~~ak~~L~~~~i~y~~i 46 (99)
T 3qmx_A 20 IYTWSTC-PF--CMRALALLKRKGVEFQEY 46 (99)
T ss_dssp EEECTTC-HH--HHHHHHHHHHHTCCCEEE
T ss_pred EEEcCCC-hh--HHHHHHHHHHCCCCCEEE
Confidence 3445556 53 566677777888888554
No 176
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=33.23 E-value=42 Score=21.92 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=27.9
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC---HHHHhHHhCCC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS---KQALGRACGVT 96 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s---k~eLG~a~G~~ 96 (128)
..+.+|.|..|. + ..+..+++++++++-.+.+ ..++.+..|..
T Consensus 69 ~~~~vv~is~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 114 (160)
T 1xvw_A 69 DDSAALAISVGP-P----PTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF 114 (160)
T ss_dssp SSEEEEEEESCC-H----HHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred CCcEEEEEeCCC-H----HHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence 347788887774 2 2345566677776644433 67888988875
No 177
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=33.22 E-value=65 Score=22.09 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHHcCceeEEEEecCCChhh----HHhhHHHHHHhCCCCEEEeC
Q 033058 41 EATKTLNRGISEFIVMAADTEPLE----ILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~----~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+.+.+++.++-+||++.|..... ....+....++.++|++++.
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 70 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVP 70 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEEC
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEC
Confidence 334444444688999999974321 11223333344578887764
No 178
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=33.19 E-value=29 Score=22.34 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=19.3
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHh
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALG 90 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG 90 (128)
....+..+.++.++|++.+.+|.++-
T Consensus 96 ~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 96 ADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred hHHHHHHHHHhcCCCEEEEEECcccc
Confidence 34566667777899999998886654
No 179
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=33.15 E-value=76 Score=20.79 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHcCceeEEEEec------CCChhhHHhhHHHHHHhCCCC-EEEe--CC----HHHHhHHhCCC
Q 033058 40 NEATKTLNRGISEFIVMAA------DTEPLEILLHLPLLAEDKNVP-YVFV--PS----KQALGRACGVT 96 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~------D~~p~~~~~~l~~lc~~~~IP-~~~~--~s----k~eLG~a~G~~ 96 (128)
..+.+.+.+. ++||... .| |. -.+...+-++++|| |..+ .. +++|-+..|..
T Consensus 11 ~~v~~~i~~~--~Vvvfsk~t~~~p~C-p~--C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~ 75 (118)
T 2wem_A 11 EQLDALVKKD--KVVVFLKGTPEQPQC-GF--SNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWP 75 (118)
T ss_dssp HHHHHHHHHS--SEEEEESBCSSSBSS-HH--HHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccC--CEEEEEecCCCCCcc-HH--HHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCC
Confidence 3455555555 4555555 46 53 57777778888996 6443 32 24555555543
No 180
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=33.05 E-value=57 Score=24.57 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.+.+++++ +.++|++..=.+ +.+-.+.+.++|+++++.++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3556667765 566776642222 223478899999999998764
No 181
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=33.02 E-value=1.1e+02 Score=20.34 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=33.5
Q ss_pred hHHHHHHhCCCCEEEeCCHHHHh-------------HHhCCCCceEEEEEecCCchHHHHHHHHHHHHH
Q 033058 68 HLPLLAEDKNVPYVFVPSKQALG-------------RACGVTRPVIACSVTSNEASQLKTQIQQLKDAI 123 (128)
Q Consensus 68 ~l~~lc~~~~IP~~~~~sk~eLG-------------~a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~ 123 (128)
.+..+..+.++|++.+.+|.+|- +.++.......+-+--....++.++.+.+...+
T Consensus 125 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 125 QMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 34566677899999888775542 224444343334443334467777777766554
No 182
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=32.85 E-value=98 Score=19.84 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=29.5
Q ss_pred CceeEEEEecCCCh--hhHHhhHHHHHHhCCCCEEE-eCCHH-----HHhHHhCCCC
Q 033058 49 GISEFIVMAADTEP--LEILLHLPLLAEDKNVPYVF-VPSKQ-----ALGRACGVTR 97 (128)
Q Consensus 49 ~kakLVilA~D~~p--~~~~~~l~~lc~~~~IP~~~-~~sk~-----eLG~a~G~~~ 97 (128)
..+.+|-+..|-.. .+....+..+++++++++-. ..... ++.+..|...
T Consensus 61 ~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~ 117 (158)
T 3eyt_A 61 DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG 117 (158)
T ss_dssp TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCS
T ss_pred CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCC
Confidence 34666666655210 12456677888888887633 22222 6888888764
No 183
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=32.81 E-value=65 Score=24.20 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...++.|++. .+..++.+.+.......+++--..++.+....+..+|+++||.++-+.
T Consensus 132 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 202 (288)
T 4f40_A 132 LDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCTVTPMVNQVELHPLNNQADLRAFCDAKQIKVEAWS 202 (288)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTTCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhCCCCCeEEeccCccccCCHHHHHHHHHCCCEEEEec
Confidence 34677888888899864 355677777766555544444444444334578899999999987653
No 184
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=32.62 E-value=62 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh------hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL------EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~------~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+.+.++|++..=-.|. +-.+.+.++|+++++.++.
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667777776778888875422221 2478889999999998765
No 185
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=32.61 E-value=62 Score=24.30 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHHHHc-CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNR-GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~-~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+..+.+.+ ..++++++|.|+... . -+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~-~--~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATA-I--ALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhH-H--HHHHHHHHCCCCEEcc
Confidence 344566666 779999999998653 2 2556667789999874
No 186
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=32.39 E-value=40 Score=27.40 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHc----CceeEEEEec---CCChh--hHHhhHHHHHHhCCCCEEEeC
Q 033058 33 KQLKKGANEATKTLNR----GISEFIVMAA---DTEPL--EILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 33 g~lv~G~~~v~kai~~----~kakLVilA~---D~~p~--~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++..|.+-|.+.+.= ..+-|||..+ |.+.. .+---+-.+|+++++|++.+.
T Consensus 266 a~l~~Gi~~v~~~~~l~~~l~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaia 326 (383)
T 3cwc_A 266 AQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIA 326 (383)
T ss_dssp CEEECHHHHHHHHTTHHHHHHHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEccHHHHHHHHhChHhhhcCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3688999999986622 3589999998 66432 133456789999999997654
No 187
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=32.28 E-value=79 Score=21.28 Aligned_cols=52 Identities=4% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHcCceeEEEEec------CCChhhHHhhHHHHHHhCCCCEEEeC------CHHHHhHHhCCC
Q 033058 40 NEATKTLNRGISEFIVMAA------DTEPLEILLHLPLLAEDKNVPYVFVP------SKQALGRACGVT 96 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~------D~~p~~~~~~l~~lc~~~~IP~~~~~------sk~eLG~a~G~~ 96 (128)
..+.+.+..++ ++|... .| |. -.....+.++++|||..+. .+++|....|..
T Consensus 26 ~~v~~~i~~~~--Vvvy~ks~~~~~~C-p~--C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 26 EKIQRQIAENP--ILLYMKGSPKLPSC-GF--SAQAVQALAACGERFAYVDILQNPDIRAELPKYANWP 89 (135)
T ss_dssp HHHHHHHHHCS--EEEEESBCSSSBSS-HH--HHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCC--EEEEEEecCCCCCC-cc--HHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCC
Confidence 34445555553 444433 55 43 5667777788888876543 134666666754
No 188
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=32.12 E-value=46 Score=22.18 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
......-..|+.+.|+-+.|-+. ...+...+++.|+|+..+-+
T Consensus 41 ~~~~~W~~~g~~KVvlk~~~e~~---l~~l~~~a~~~gl~~~~i~D 83 (117)
T 1q7s_A 41 EMLKQWEYCGQPKVVVKAPDEET---LIALLAHAKMLGLTVSLIQD 83 (117)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH---HHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhCCCeeEEEEcCCHHH---HHHHHHHHHHCCCCEEEEEE
Confidence 34445556688777777776533 46778888999999765543
No 189
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=32.07 E-value=1e+02 Score=19.75 Aligned_cols=52 Identities=4% Similarity=0.030 Sum_probs=34.5
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC----HHHHhHHhCCCCceEEEEE
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS----KQALGRACGVTRPVIACSV 104 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s----k~eLG~a~G~~~~~~~v~i 104 (128)
..+.+|.+..|.++ ..+..+.+++++++..+.+ ..++.+..|...--+.+.|
T Consensus 68 ~~~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~li 123 (150)
T 3fw2_A 68 KYIGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILL 123 (150)
T ss_dssp SSEEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEE
T ss_pred CCeEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEE
Confidence 34788888877654 4456666888998866554 4689999998743333333
No 190
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=31.99 E-value=52 Score=21.68 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHhCCCCEEEeCCHHHHhH----------HhCCCCceEEEEEecCCchHHHHHHHHHHHHHh
Q 033058 71 LLAEDKNVPYVFVPSKQALGR----------ACGVTRPVIACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 71 ~lc~~~~IP~~~~~sk~eLG~----------a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
..+...++|++.+++|.+|-. .+-.......+-+--....++.++++.+...+.
T Consensus 105 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 105 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp HHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 334456899998888776521 111122332333333344566666666655543
No 191
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=31.95 E-value=39 Score=25.87 Aligned_cols=44 Identities=0% Similarity=0.016 Sum_probs=29.6
Q ss_pred HHHHHHHHHcC--ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRG--ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~--kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
..++.+++... +.++|++.+-.....-.+.+..+|++++++++.
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~ 154 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 35666777653 578888776332222458889999999998754
No 192
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=31.84 E-value=60 Score=25.32 Aligned_cols=65 Identities=6% Similarity=-0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. .+..++.+++.....+..+.--..++..-...+..+|+++||.++-+.
T Consensus 169 ~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~i~p~v~Q~e~~~~~~~~~ll~~~~~~gI~v~a~s 239 (344)
T 2bgs_A 169 EGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYS 239 (344)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhcCCCceeeecccCcccCcHHHHHHHHHCCCEEEEeC
Confidence 45777888888999864 456777777776665555554445554233678899999999986543
No 193
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=31.74 E-value=99 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=28.8
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHH
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRA 92 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a 92 (128)
.++..+|+--|++..+.-..+.....+.++|++.+.+|.++-..
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 45666666666654433445556666788999998888776554
No 194
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=31.57 E-value=69 Score=24.47 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcee--EEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISE--FIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kak--LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....++.+++...... .+++--..++..-...+..+|+++||.++-+.
T Consensus 148 ~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 220 (326)
T 3buv_A 148 CATWEAMEACKDAGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQPKLLKFCQQHDIVITAYS 220 (326)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEEeCCCHHHHHHHHHhCCCCCCCeeeeeecccccCcHHHHHHHHHcCCEEEEec
Confidence 45777888888999864 4566777777766655 55555455554234578999999999987553
No 195
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=31.53 E-value=70 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=30.1
Q ss_pred HHHHHHHHc---CceeEEEEec--CC-----ChhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNR---GISEFIVMAA--DT-----EPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~---~kakLVilA~--D~-----~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++.++|.+ ++.++|++.. +. -+.+..+.+.++|++||++++.=
T Consensus 170 ~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp HHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 556667764 4678888753 21 12235789999999999998754
No 196
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=31.44 E-value=1.1e+02 Score=21.04 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHcCceeEEEEe-----cCCChhhH---HhhHHHHHHhCCCCEEEeC
Q 033058 37 KGANEATKTLNRGISEFIVMA-----ADTEPLEI---LLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA-----~D~~p~~~---~~~l~~lc~~~~IP~~~~~ 84 (128)
.=.+.+.+-+++.++..++|. +......+ ......+.+..++|+++++
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vD 97 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWD 97 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 345677777888899999998 43332213 2333356666799998854
No 197
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=31.35 E-value=46 Score=25.44 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC----H--HHHhHHhCCCCceEEEEEecC------CchHHHHHHHHHHHHHh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS----K--QALGRACGVTRPVIACSVTSN------EASQLKTQIQQLKDAIE 124 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s----k--~eLG~a~G~~~~~~~v~i~~~------~~~~~~~li~~i~~~~~ 124 (128)
+.+|. -...+.+++++++|+++|+.+ + +.|.+..|.+.. ...+.+. ...++.++++..-+++.
T Consensus 215 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~--~~~~~~~l~~~~~~~~~Y~~~m~~n~~~l~ 289 (294)
T 3hh8_A 215 EGTPD-QISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIY--SEIFTDSIAKKGKPGDSYYAMMKWNLDKIS 289 (294)
T ss_dssp CCCHH-HHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEE--EEECSSSCCCTTSTTCSHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEE--eeecCcccCCCCCCcccHHHHHHHHHHHHH
Confidence 34566 578889999999999998742 2 456666665521 0022221 23467776666555554
No 198
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=31.35 E-value=91 Score=21.86 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHcCceeEEEEec-CCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 44 KTLNRGISEFIVMAA-DTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 44 kai~~~kakLVilA~-D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
..+.++++.-+|+.. |.+. .......+.+.+||++.+++
T Consensus 53 ~l~~~~~vdgii~~~~~~~~---~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 53 YHLSQAPPDALILAPNSAED---LTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp HHHHHSCCSEEEECCSSTTT---THHHHHHHHHTTCCEEEESS
T ss_pred HHHHhCCCCEEEEeCCCHHH---HHHHHHHHHHCCCcEEEEec
Confidence 344445265555544 4322 23344566788999988864
No 199
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=31.29 E-value=74 Score=22.70 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=36.0
Q ss_pred ChhHHHHHHH-HHHHHHHcCC-cc---cc-----HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 15 DSNLTITILD-LVQQAANYKQ-LK---KG-----ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 15 ~~~~~~~i~~-lL~~a~~ag~-lv---~G-----~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+......+.+ +-..+.+.|. +. .+ ..+.++.+..+++.-+|+...... ........+.+.+||++.++
T Consensus 16 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 16 DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD--VLNPWLQKINDAGIPLFTVD 93 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH--HHHHHHHHHHHTTCCEEEES
T ss_pred CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--hhHHHHHHHHHCCCcEEEec
Confidence 4444444444 4444555664 11 11 133445555556655555433212 23445566778899999887
Q ss_pred C
Q 033058 85 S 85 (128)
Q Consensus 85 s 85 (128)
+
T Consensus 94 ~ 94 (291)
T 3l49_A 94 T 94 (291)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=31.02 E-value=77 Score=24.40 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHc-----CceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR-----GISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~-----~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.+++++ .+.++|++..=.. +.+-.+.+.++|+++++.++.
T Consensus 176 ~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 176 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 455555654 3678887763222 223468888999999998764
No 201
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=31.01 E-value=78 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=21.3
Q ss_pred HHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 43 TKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 43 ~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+.+..+++.-+|+ +.|.+. + ......+.+.+||++.+.
T Consensus 53 i~~li~~~vdgiii~~~~~~~--~-~~~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDG--L-CPALKRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSST--T-HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHcCCCEEEEeCCCHHH--H-HHHHHHHHHCcCEEEEec
Confidence 33444455655544 455432 1 233455677899987764
No 202
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=30.82 E-value=19 Score=21.93 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 41 EATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 41 ~v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.++|++-+ -.|.|++.|... ...++.+|++.|-.+..
T Consensus 22 ~~k~al~~l~~G~~L~V~~dd~~a---~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 22 ELIKAYKQAKVGEVISVYSTDAGT---KKDAPAWIQKSGQELVG 62 (78)
T ss_dssp HHHHHHTTSCTTCCEECCBSSSCH---HHHHHHHHHHHTEEECC
T ss_pred HHHHHHHcCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEE
Confidence 3455665522 247888888654 48889999998866543
No 203
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=30.75 E-value=66 Score=24.46 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcee--EEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISE--FIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kak--LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...+++|++. .+..++.+++.....+ .++.--..+|......+..+|+++||.++-+
T Consensus 146 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 217 (324)
T 3ln3_A 146 CDTWERLEECXDAGLVXSIGVSNFNHRQLERILNXPGLXYXPVCNQVECHLYLNQRXLLDYCESXDIVLVAY 217 (324)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCeeEEEecCCcHHHHHHHHHhcCccCCceeeEeeeCcccchHHHHHHHHHcCCEEEEe
Confidence 45677888889999864 4567777877766554 4443333444322467899999999998754
No 204
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=30.70 E-value=68 Score=21.17 Aligned_cols=47 Identities=4% Similarity=0.115 Sum_probs=27.4
Q ss_pred cHHHHHHHHHcCceeEEEEec-CC---ChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 38 GANEATKTLNRGISEFIVMAA-DT---EPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~-D~---~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
|..+.++.+++|++..|++.+ |- +..++...+...++++||.++.+.
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~~~~~~~~~l~~~gv~l~~~~ 109 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLN 109 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESSHHHHCSCHHHHHHHHHHTTGGGTCEEEETT
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCEEEEec
Confidence 445677777778776555543 11 122223355567788888877664
No 205
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=30.67 E-value=82 Score=21.65 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHH-------cCceeEEEEecCCChhhH--HhhHHHHHHhCCCCEEEeCC--------------HHHHhH
Q 033058 35 LKKGANEATKTLN-------RGISEFIVMAADTEPLEI--LLHLPLLAEDKNVPYVFVPS--------------KQALGR 91 (128)
Q Consensus 35 lv~G~~~v~kai~-------~~kakLVilA~D~~p~~~--~~~l~~lc~~~~IP~~~~~s--------------k~eLG~ 91 (128)
+-.|.+.+.+.+. .+..+.||+-.|..+.+- .......+++.+|++..++- ..+|-.
T Consensus 86 ~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~ 165 (200)
T 1v7p_C 86 TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA 165 (200)
T ss_dssp HHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHH
Confidence 4566666666532 234688888888765421 23345556788998765432 467877
Q ss_pred HhCCCCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 92 ACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 92 a~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
..+.....-+-.+ .+..++.+.++.|.+.|-.
T Consensus 166 iA~~~~g~~~~~~--~~~~~l~~i~~~i~~~ic~ 197 (200)
T 1v7p_C 166 IASIPTERYFFNV--SDEAALLEKAGTLGEQIFS 197 (200)
T ss_dssp HSCSSHHHHEEEE--SSSGGGHHHHHHHHHHHHT
T ss_pred HhCCccHhcEEEc--CCHHHHHHHHHHHHhhhcC
Confidence 7776532211122 3457788888888777643
No 206
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=30.50 E-value=78 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+..+.+.+..++.+++|.+.... . -+..+-+..+||++-+
T Consensus 65 ~~~~~L~~~g~d~iviaCNTas~-~--~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 65 ELVNFLLTQNVKMIVFACNTATA-V--AWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCchHhH-H--HHHHHHHhCCCCEEec
Confidence 34455566779999999988553 2 2456667779999874
No 207
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=30.47 E-value=32 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh-hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL-EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~-~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++...+.++|++.....+. .-.+.+.++|+++|++++.
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 196 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 196 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 4566677765356778774222222 1258889999999998765
No 208
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=30.44 E-value=1.1e+02 Score=23.47 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=54.3
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHHHHcCCcc----ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCC
Q 033058 3 GEAVNPKAYPLADSNLTITILDLVQQAANYKQLK----KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV 78 (128)
Q Consensus 3 ~~~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv----~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~I 78 (128)
||-..|=+.|+..++=.+++..++..-++.+-.+ +=..-...+++.| +.+ =+|++.-..-..+..++.++++
T Consensus 51 geSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~~~~Va~~al~aG-a~i---INDVs~g~~d~~m~~~va~~~~ 126 (270)
T 4hb7_A 51 GVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLG-VDM---INDQWAGLYDHRMFQIVAKYDA 126 (270)
T ss_dssp SCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHHHHHT-CCE---EEETTTTSSCTHHHHHHHHTTC
T ss_pred CccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHhc-cce---eccccccccchhHHHHHHHcCC
Confidence 6778899999977777789999998776544322 3345566777777 443 3777643123566788899999
Q ss_pred CEEEeC
Q 033058 79 PYVFVP 84 (128)
Q Consensus 79 P~~~~~ 84 (128)
|||...
T Consensus 127 ~~vlMH 132 (270)
T 4hb7_A 127 EIILMH 132 (270)
T ss_dssp EEEEEC
T ss_pred CeEEec
Confidence 999764
No 209
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=30.42 E-value=62 Score=24.66 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHc----CceeEEEEec---CCC----hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR----GISEFIVMAA---DTE----PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~----~kakLVilA~---D~~----p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.+++++ .+.++|++-. +.. +.+..+.+..+|++++++++.
T Consensus 185 ~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~ 238 (426)
T 1sff_A 185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238 (426)
T ss_dssp HHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 344555553 4677777732 221 334578899999999998765
No 210
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=30.27 E-value=47 Score=25.42 Aligned_cols=64 Identities=5% Similarity=-0.015 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 21 TILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 21 ~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..+..|...+++|++. ....++.+++...+...++.--...+......+..+|+++||.++-+.
T Consensus 159 e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~i~~~~nq~~~~~~~~~~~ll~~c~~~gI~v~a~s 228 (314)
T 3b3d_A 159 EAWRALETLYKEGRIKAIGVSNFQIHHLEDLMTAAEIKPMINQVEFHPRLTQKELIRYCQNQGIQMEAWS 228 (314)
T ss_dssp HHHHHHHHHHHTTSEEEEEEESCCHHHHHHHTTTCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHCCCEeEEEecCCchHHHHHHHHhcCCCeEEEEeccccccchHHHHHHHHHcCCEEEEec
Confidence 4556777788899864 456777787777776655544444444445678899999999986553
No 211
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=30.20 E-value=45 Score=26.23 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=33.8
Q ss_pred CccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCE
Q 033058 34 QLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 34 ~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
..+-|..+.++.+++...+++|+.++.+.. .......+.+..|+|+
T Consensus 29 ~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~-~~~~~~~l~~~lgi~~ 74 (352)
T 3kc2_A 29 KPIAGASDALKLLNRNKIPYILLTNGGGFS-ERARTEFISSKLDVDV 74 (352)
T ss_dssp EECTTHHHHHHHHHHTTCCEEEECSCCSSC-HHHHHHHHHHHHTSCC
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCCCCC-chHHHHHHHHhcCCCC
Confidence 456788899999999889999999997643 3344455555677774
No 212
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=30.08 E-value=68 Score=24.11 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++.+.+++.+++.||.-...+++ +.+. ++++.|+++..+.
T Consensus 213 ~~l~~~ik~~~v~~if~e~~~~~~-~~~~---ia~~~g~~v~~ld 253 (284)
T 2prs_A 213 HEIRTQLVEQKATCVFAEPQFRPA-VVES---VARGTSVRMGTLD 253 (284)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCSH-HHHH---HTTTSCCEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHcCCeEEEec
Confidence 467788889999999999998887 5544 4889999987654
No 213
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=30.05 E-value=25 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=21.7
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+..++...++++|||++.-. .|.+++-
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 54 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDI---KLARSLF 54 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecCH---HHHHHHH
Confidence 68999999999999997654 5666654
No 214
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=29.98 E-value=61 Score=24.25 Aligned_cols=65 Identities=6% Similarity=-0.106 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....+..+++.....+..++=-..+|.+....+..+|+++||.++-+.
T Consensus 118 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 188 (278)
T 1hw6_A 118 VHAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHDVKIESWG 188 (278)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhcCCCceeEEEEeCcccCCHHHHHHHHHcCCEEEEec
Confidence 45777888888899864 345667777765444333333333443223578899999999986544
No 215
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=29.95 E-value=36 Score=24.90 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=25.0
Q ss_pred ccccHHHH----HHHHHcC--ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 35 LKKGANEA----TKTLNRG--ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 35 lv~G~~~v----~kai~~~--kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++|.-.. .++++++ ...++.+-+|-+.. .....|+++|||+..+
T Consensus 6 l~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~----~~~~~A~~~gIp~~~~ 56 (209)
T 1meo_A 6 LISGTGSNLQALIDSTREPNSSAQIDIVISNKAAV----AGLDKAERAGIPTRVI 56 (209)
T ss_dssp EESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTC----HHHHHHHHTTCCEEEC
T ss_pred EEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCCh----HHHHHHHHcCCCEEEE
Confidence 34554444 4444455 34555554443221 1247899999999764
No 216
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=29.95 E-value=30 Score=26.71 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=31.9
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++.+.+++.+++.||.-...+++ +.+. ++++.|++++.+.
T Consensus 229 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~---ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 229 AKLKTYAKEHNVKVIYFEEIASSK-VADT---LASEIGAKTEVLN 269 (312)
T ss_dssp HHHHHHTTSSCCCEEECSSCCCHH-HHHH---HHHHTCCEEECCC
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHhCCcEEEec
Confidence 456778888999999999888886 5544 4788999986654
No 217
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=29.73 E-value=75 Score=26.72 Aligned_cols=44 Identities=27% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHH
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQ 87 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~ 87 (128)
.+..++.|.+-.+.+||++.++++. . .+ ++.++||-++...++.
T Consensus 284 l~~~v~~I~~~g~~vvi~~~~I~~~-a-l~---~L~~~gI~av~~v~~~ 327 (568)
T 3p9d_H 284 IDAMMKEIADMGVECIVAGAGVGEL-A-LH---YLNRYGILVLKVPSKF 327 (568)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCCHH-H-HH---HHHHHTCEEECCCCHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcChH-H-HH---HHHHCCeEEEecCCHH
Confidence 3456667777778999999999876 3 22 2344567666554443
No 218
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=29.63 E-value=74 Score=26.71 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=14.5
Q ss_pred HHHHHHcCceeEEEEecCCChh
Q 033058 42 ATKTLNRGISEFIVMAADTEPL 63 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~ 63 (128)
.++.|.+-.+.+||++.|+++.
T Consensus 284 ~le~I~~~g~~lvI~~~~I~~~ 305 (559)
T 3p9d_A 284 RVKKIIDAGAQVVLTTKGIDDL 305 (559)
T ss_dssp HHHHHHTTCCSEEEESSCCCGG
T ss_pred HHHHHHhhCCCEEEEcCCCCHH
Confidence 3444445556788888888765
No 219
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.51 E-value=1e+02 Score=22.69 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=25.1
Q ss_pred HHHHHHcCceeEEEEec-CCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 42 ATKTLNRGISEFIVMAA-DTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 42 v~kai~~~kakLVilA~-D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
..+.+...++.-+|+.. +.+. ..+..++++.+||++.++.
T Consensus 111 ~~~~l~~~~vdgiIi~~~~~~~----~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 111 AIQYLLDLRCDAIMIYPRFLSV----DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHTTCSEEEECCSSSCH----HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHhCCCCEEEEeCCCCCh----HHHHHHHHcCCCCEEEEcC
Confidence 45556566665555544 3332 3456778889999988763
No 220
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=29.49 E-value=96 Score=22.51 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=24.2
Q ss_pred HHHHHHHcCce-eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 41 EATKTLNRGIS-EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 41 ~v~kai~~~ka-kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
+.++.+..+++ .+++.+.|.+. .......+.+.+||++.+++
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~---~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQV---LSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTS---CHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHcCCCEEEEeCCChhh---hHHHHHHHHHCCCeEEEECC
Confidence 34455555555 55555555432 13345566778999988764
No 221
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.41 E-value=84 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=24.3
Q ss_pred HHHHHHHcCce-eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 41 EATKTLNRGIS-EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 41 ~v~kai~~~ka-kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
+.++.+..+++ .+++...|.+..+....+...+.+.+||++.+++
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 34455555666 4455444442100122344556778999998764
No 222
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=29.38 E-value=92 Score=18.45 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=10.5
Q ss_pred HhhHHHHHHhCCCCEEE
Q 033058 66 LLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 66 ~~~l~~lc~~~~IP~~~ 82 (128)
-.+...+.++++|||.+
T Consensus 17 C~~ak~~L~~~gi~y~~ 33 (87)
T 1aba_A 17 CDNAKRLLTVKKQPFEF 33 (87)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 45556666667777643
No 223
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=29.30 E-value=99 Score=21.76 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=13.0
Q ss_pred eeEEEEecCCChhhHHhh
Q 033058 51 SEFIVMAADTEPLEILLH 68 (128)
Q Consensus 51 akLVilA~D~~p~~~~~~ 68 (128)
-.|+|||+|++..-+...
T Consensus 54 ~pLlIIAedvegeaLatL 71 (145)
T 1srv_A 54 KPLLIIAEDVEGEALATL 71 (145)
T ss_dssp CCEEEEESEECHHHHHHH
T ss_pred CCEEEEecccchhhhhhh
Confidence 469999999988644333
No 224
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=29.28 E-value=52 Score=25.17 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
..+.+.+..++++|||.|+... --+..+-+..+||++-+
T Consensus 78 ~~~~L~~~g~d~IVIACNTa~~---~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 78 ALDFFEQFQIDMLIIACNTASA---YALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHHHTTSCCSEEEECCHHHHH---HSHHHHHHHCSSCEECS
T ss_pred HHHHHHHCCCCEEEEeCCChhH---HHHHHHHHhcCCCEEcC
Confidence 3456777789999999988543 22566667789999864
No 225
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=29.25 E-value=1.7e+02 Score=21.37 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=25.2
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHH
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRA 92 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a 92 (128)
..+..+|+--|++..+-...+.....+.++|++.+.+|.++-..
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 45555555555543212223344445678999888888776443
No 226
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=29.16 E-value=1e+02 Score=23.62 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHHHHc-----CceeEEEEecC------CChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR-----GISEFIVMAAD------TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~-----~kakLVilA~D------~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.++++. .+.++|++.+= +-+.+..+.+.++|++++++++.
T Consensus 173 ~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 445556653 36888887532 22333578889999999998764
No 227
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=28.94 E-value=82 Score=23.87 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCce--eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGIS--EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~ka--kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....++.+++..... +..++=-..+|..-...+..+|+++||.++-+.
T Consensus 139 ~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 211 (316)
T 1us0_A 139 LDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYS 211 (316)
T ss_dssp HHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTCTTCCSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHhCcccCCceeeehhcCCccCCHHHHHHHHHcCCEEEEec
Confidence 45777888888999864 456777777776655 434443344443223578899999999987543
No 228
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=28.93 E-value=82 Score=20.53 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC-CH---HHHhHHhCC
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP-SK---QALGRACGV 95 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~-sk---~eLG~a~G~ 95 (128)
++.+|.|.-|-.+. ....+..++++++.++..+. +. .++.+.+|.
T Consensus 72 ~v~vv~is~d~~~d-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPERD-PPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTTC-CHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCCC-CHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 57788888775432 45677888888999986654 44 367777775
No 229
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=28.90 E-value=64 Score=24.57 Aligned_cols=64 Identities=6% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...+++|++. ....++.+++.......++.--..+|.+....+..+|+++||.++-+
T Consensus 138 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 207 (296)
T 1mzr_A 138 VEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESW 207 (296)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCcCEEEEeCCCHHHHHHHHHhcCCCceEEeeecccccCCHHHHHHHHHCCCeEEEe
Confidence 45777888888999854 34566666666544443333333444322356889999999998654
No 230
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=28.87 E-value=1.1e+02 Score=20.96 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=28.7
Q ss_pred HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhC-------CCCEE-EeCCHHHHhHHhCCC
Q 033058 43 TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDK-------NVPYV-FVPSKQALGRACGVT 96 (128)
Q Consensus 43 ~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~-------~IP~~-~~~sk~eLG~a~G~~ 96 (128)
.+.++...+.+|.|..|.... . ..+.+++ ++++- ..+...++.+..|..
T Consensus 61 ~~~~~~~~v~vv~Is~d~~~~-~----~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~ 117 (197)
T 1qmv_A 61 AEDFRKLGCEVLGVSVDSQFT-H----LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVL 117 (197)
T ss_dssp HHHHHTTTEEEEEEESSCHHH-H----HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHCCCEEEEEECCCHHH-H----HHHHHHHHhhCCCCCCceEEEECCcHHHHHHcCCc
Confidence 344444558888888876332 3 3344433 55542 334456899999886
No 231
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.83 E-value=92 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+++++.++. ..++.+-.|-.. .....+|+++|||+..+.
T Consensus 36 ~~~~l~~l~~~~~~~~I~~Vvt~~~~----~~~~~~A~~~gIp~~~~~ 79 (229)
T 3auf_A 36 LQAILDGCREGRIPGRVAVVISDRAD----AYGLERARRAGVDALHMD 79 (229)
T ss_dssp HHHHHHHHHTTSSSEEEEEEEESSTT----CHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCc----hHHHHHHHHcCCCEEEEC
Confidence 345667777663 455555555321 224678999999988643
No 232
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=28.83 E-value=86 Score=23.76 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcee--EEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISE--FIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kak--LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..|...+++|++. ....++.+++...... .++.--..++......+..+|+++||.++-+
T Consensus 139 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (316)
T 3o3r_A 139 LDAWEGMEELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLTQEKLIQYCHSKGIAVIAY 210 (316)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCCHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHhCCCCCCceEeeccCCcccchHHHHHHHHHcCCEEEEe
Confidence 45678888889999864 3566777777655432 4444444444323467899999999998765
No 233
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=28.70 E-value=71 Score=20.73 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHhCCCCEEEeCCHHHHhHH----------hCCCCceEEEEEecCCchHHHHHHHHHHHHHh
Q 033058 73 AEDKNVPYVFVPSKQALGRA----------CGVTRPVIACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 73 c~~~~IP~~~~~sk~eLG~a----------~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
....++|++.+.+|.+|-.. +........+-+--....++.++.+.+...+.
T Consensus 110 ~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 34568999999888776431 11122332333333334566666666655543
No 234
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=28.61 E-value=94 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=29.4
Q ss_pred HHHHHHHHH---cCceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLN---RGISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~---~~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+...++++ ..+.++|++-..-+ +.+..+.+.++|++|+++++.
T Consensus 187 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 240 (439)
T 3dxv_A 187 LTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240 (439)
T ss_dssp HHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 345566664 45567777765432 223478999999999998875
No 235
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=28.59 E-value=1.6e+02 Score=22.56 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=39.7
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeCC--HHHHhHHhCCCCceEEEE--EecC------CchHHHHHHHHHHHHHhh
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVPS--KQALGRACGVTRPVIACS--VTSN------EASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~s--k~eLG~a~G~~~~~~~v~--i~~~------~~~~~~~li~~i~~~~~~ 125 (128)
+.+|. -...+.+++++++|+++|+.+ ...+-+.+-+..++-+.. ..++ ...++.++.+..-+++..
T Consensus 222 ePs~~-~l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~ 297 (307)
T 3ujp_A 222 QFTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 297 (307)
T ss_dssp CCCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEEEEECSSCCCCSSSSCSSHHHHHHHHHHHHHT
T ss_pred CCCHH-HHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCceeeeeeccCCCCCCCCccCHHHHHHHHHHHHHH
Confidence 34566 578889999999999998753 234455555554443322 2232 123677776666655543
No 236
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=28.58 E-value=28 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=21.4
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+..++...++++|||++.-. .|-+++-
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~---~LAr~L~ 69 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNV---PLAHQLL 69 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEECH---HHHHHHH
Confidence 68999999999999997654 5666544
No 237
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=28.51 E-value=87 Score=24.07 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=33.2
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHH--HHhCCCCEE
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLL--AEDKNVPYV 81 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~l--c~~~~IP~~ 81 (128)
.++.+.+++.+++.||.-...+++ +.+.+... |++.|+|+.
T Consensus 236 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~la~~~~A~e~gv~v~ 278 (313)
T 1toa_A 236 QELAAFIAQRKLPAIFIESSIPHK-NVEALRDAVQARGHVVQIG 278 (313)
T ss_dssp HHHHHHHHHTTCSEEEEETTSCTH-HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHHHHccchhhhcCCcee
Confidence 467778889999999999999987 77777633 589999974
No 238
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=28.32 E-value=76 Score=23.78 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHcCceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++.. +.++|++..=.. +.+-.+.+..+|++++++++.
T Consensus 151 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 151 DELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 445555543 578888743221 222478889999999998764
No 239
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=28.12 E-value=1.6e+02 Score=22.13 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 46 LNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 46 i~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++..++++++|.+.... --+..+-+..+||++-+.
T Consensus 80 l~~~g~d~IviaCNTas~---~~l~~lr~~~~iPVigi~ 115 (285)
T 2jfn_A 80 QERYPLALAVVACNTAST---VSLPALREKFDFPVVGVV 115 (285)
T ss_dssp HHHSCCSEEEECCHHHHH---HHHHHHHHHCSSCEECCC
T ss_pred HHhCCCCEEEEECccccH---HHHHHHHHhCCCCEEehH
Confidence 454669999999988553 134566677899998754
No 240
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=28.07 E-value=76 Score=23.56 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++ +.+.++|++..=..| .+-...+.++|++++++++.
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35666777 566788877432222 12467778889999998764
No 241
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=28.03 E-value=1.9e+02 Score=21.94 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC--------------HHHHhHHhCCCCce
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS--------------KQALGRACGVTRPV 99 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s--------------k~eLG~a~G~~~~~ 99 (128)
-.+.|..=+.-|||.... ++ ..+..+.+..|||++.+.. -..||+++|++.++
T Consensus 88 n~E~Ilal~PDLIi~~~~-~~----~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e~~A 154 (346)
T 2etv_A 88 DLESLITLQPDVVFITYV-DR----XTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGREERA 154 (346)
T ss_dssp CHHHHHHHCCSEEEEESC-CH----HHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHhcCCCCEEEEeCC-cc----chHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCHHHH
Confidence 345555556888887653 22 3345556677999987642 24689999987554
No 242
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=28.02 E-value=83 Score=23.00 Aligned_cols=43 Identities=5% Similarity=0.062 Sum_probs=28.9
Q ss_pred HHHHH-HHHc------CceeEEEEecC--CC---hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATK-TLNR------GISEFIVMAAD--TE---PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~k-ai~~------~kakLVilA~D--~~---p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+ ++.. .+.++|++..- .. +.+-.+.+.++|++++++++.
T Consensus 124 ~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~ 178 (356)
T 1v72_A 124 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 178 (356)
T ss_dssp HHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 44555 5654 26788888752 11 133568889999999998765
No 243
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=27.98 E-value=54 Score=20.57 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=27.1
Q ss_pred HHHHHHcC---ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 42 ATKTLNRG---ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 42 v~kai~~~---kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+.++|++- --.|.|++.|.. ....++.+|++.|-.+....
T Consensus 18 ~kkal~~l~~~G~~L~V~~dd~~---a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 18 AKKALAELGEAGGVVTVLVDNDI---SRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp HHHHHHTTGGGCCEEEEEESSHH---HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHhccCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 44455432 136777877753 46899999999998876543
No 244
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=27.97 E-value=67 Score=20.67 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 41 EATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 41 ~v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+.++|++-+ -.|.|++.|..+ ...++.+|++.|-.+...
T Consensus 43 ktkkaL~~l~~Ge~L~Vl~dd~~a---~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 43 ATLEAMPQLKKGEILEVVSDCPQS---INNIPLDARNHGYTVLDI 84 (97)
T ss_dssp HHHHHTTTCCSSCEEEEEEBCSSS---SCHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHcCCCCCEEEEEECCcch---HHHHHHHHHHCCCEEEEE
Confidence 4566666533 248888888654 478899999998887653
No 245
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.91 E-value=1.1e+02 Score=21.92 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=34.2
Q ss_pred ChhHHHHHHH-HHHHHHHcCC-ccc-c--------HHHHHHHHHcCcee-EEEEecCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 15 DSNLTITILD-LVQQAANYKQ-LKK-G--------ANEATKTLNRGISE-FIVMAADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 15 ~~~~~~~i~~-lL~~a~~ag~-lv~-G--------~~~v~kai~~~kak-LVilA~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+......+++ +-..|.+.|. +.. . ..+.++.+..+++. +++...|.+. . ......+.+.+||++.
T Consensus 15 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~-~~~~~~~~~~~iPvV~ 91 (305)
T 3g1w_A 15 GMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE--L-TDTINKAVDAGIPIVL 91 (305)
T ss_dssp TSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT--T-HHHHHHHHHTTCCEEE
T ss_pred CChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH--H-HHHHHHHHHCCCcEEE
Confidence 4444545554 4444555664 222 1 12334444445554 4444445432 1 3334556678999988
Q ss_pred eCC
Q 033058 83 VPS 85 (128)
Q Consensus 83 ~~s 85 (128)
+++
T Consensus 92 ~~~ 94 (305)
T 3g1w_A 92 FDS 94 (305)
T ss_dssp ESS
T ss_pred ECC
Confidence 764
No 246
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=27.77 E-value=89 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=27.8
Q ss_pred ccccHHHH----HHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANEA----TKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~v----~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-.. +++.++|+ +.++.+-+|- |. ..+..+|+++|||+..+.
T Consensus 8 l~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~-~~---a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 8 FASGSGTNAEAIIQSQKAGQLPCEVALLITDK-PG---AKVVERVKVHEIPVCALD 59 (211)
T ss_dssp ECCTTCHHHHHHHHHHHTTCCSSEEEEEEESC-SS---SHHHHHHHTTTCCEEECC
T ss_pred EEeCCchHHHHHHHHHHcCCCCcEEEEEEECC-CC---cHHHHHHHHcCCCEEEeC
Confidence 44554444 44445664 4566666663 21 245789999999987653
No 247
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=27.72 E-value=54 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.9
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..-+||.|.|. +. +...+...|.++++|++...
T Consensus 121 ~~DvVi~~~d~-~~-~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 121 EHDLVLDCTDN-VA-VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TSSEEEECCSS-HH-HHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEeCCC-HH-HHHHHHHHHHHcCCCEEEee
Confidence 57899999986 54 68889999999999998854
No 248
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.70 E-value=1e+02 Score=18.43 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCC---ccccHHHHHHHHHcCceeEEEEecCCC-h---hhHHhhHHHHHHhCCCCEEEe
Q 033058 18 LTITILDLVQQAANYKQ---LKKGANEATKTLNRGISEFIVMAADTE-P---LEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 18 ~~~~i~~lL~~a~~ag~---lv~G~~~v~kai~~~kakLVilA~D~~-p---~~~~~~l~~lc~~~~IP~~~~ 83 (128)
..+.+.+.|.. .|. ......+..+.+++....+||+--+.. . .++...+.......++|++.+
T Consensus 17 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 17 LSATLRSALEG---RGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHH---HTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHh---cCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 33445555543 232 334567778888888899999876553 2 223333333222468998777
No 249
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.69 E-value=98 Score=22.31 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=22.9
Q ss_pred HHHHHHcCcee-EEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 42 ATKTLNRGISE-FIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 42 v~kai~~~kak-LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
..+.+...++. +++...|.+. . ......+.+.+||++.+++
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~--~-~~~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTA--F-SKSLQRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSST--T-HHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHcCCCEEEEeCCCHHH--H-HHHHHHHHHCCCCEEEEcC
Confidence 34444445554 4444455432 1 3334566778999988763
No 250
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.69 E-value=1.4e+02 Score=21.37 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=23.1
Q ss_pred HHHHHHcCceeEEEEec-CCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 42 ATKTLNRGISEFIVMAA-DTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 42 v~kai~~~kakLVilA~-D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.++.+..+++.-+|+.. |.+ . . ......+.+.+||++.+++
T Consensus 51 ~~~~~~~~~vdgiii~~~~~~-~-~-~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 51 QIDVLLAKGVKALAINLVDPA-A-A-GTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHTTCSEEEECCSSGG-G-H-HHHHHHHHTTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEeCCCcc-h-h-HHHHHHHHHCCCcEEEecC
Confidence 34555556665555543 332 1 1 2334455678999988764
No 251
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=27.69 E-value=37 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
....+....|+.+.|+=++|-+. ...+...+++.|+|+..+-+
T Consensus 38 ~~l~~W~~~G~~Kvvlk~~~e~e---l~~L~~~a~~~gl~~~~I~D 80 (123)
T 1rzw_A 38 SLRRKWLDEGQKKVVLKVKSLEE---LLGIKHKAESLGLVTGLVQD 80 (123)
T ss_dssp THHHHTGGGCSSEEEEECSCHHH---HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHCCCcEEEEecCCHHH---HHHHHHHHHHCCCCEEEEEC
Confidence 33444456788888887776533 46778888999999877644
No 252
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=27.51 E-value=77 Score=23.88 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+..+..|...+++|++. ....++.+.........++.--...+......+..+|++++|.++-+.
T Consensus 140 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a~s 210 (324)
T 4gac_A 140 KETWKALEVLVAKGLVKALGLSNFNSRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHARGLEVTAYS 210 (324)
T ss_dssp HHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHCCCeeEecCCCCCHHHHHHHHHhCCCCcceeeeccCchhhHHHHHHHHHHhceeeeecC
Confidence 45667778888999864 456677777776666555554444554445678999999999987653
No 253
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=27.46 E-value=88 Score=23.28 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
..++.+++++ .++|++.+=..| .+-.+.+.++|++++++++.
T Consensus 155 ~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 155 YEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp HHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 3566667765 777777543333 12468888999999998764
No 254
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=27.35 E-value=62 Score=20.64 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=26.6
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCE-EEe-CC---HHHHhHHhCCCC
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPY-VFV-PS---KQALGRACGVTR 97 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~-~s---k~eLG~a~G~~~ 97 (128)
.+.+|-+..|.++ ..+....+++++++ ..+ .. ..++.+..|...
T Consensus 65 ~~~vv~vs~d~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 113 (143)
T 4fo5_A 65 KIAMCSISMDEKE----SIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRK 113 (143)
T ss_dssp TEEEEEEECCSCH----HHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGG
T ss_pred CEEEEEEEccCCH----HHHHHHHHHhCCCCceeeecccccchHHHHHcCCCC
Confidence 4666667666544 34455667777775 322 22 257888888763
No 255
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=27.29 E-value=1.3e+02 Score=24.65 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCC-EEEeCCHHHHhHHhCCCCceEEEEEecC
Q 033058 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVP-YVFVPSKQALGRACGVTRPVIACSVTSN 107 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~~~~~~~v~i~~~ 107 (128)
++.++ |+..+-.-|---+++++..-++. ....+...|++.|.. ++.+.|.+|+-+|+-.... +++|++.
T Consensus 117 I~d~~-Qi~ea~~~GAD~ILLi~a~l~~~-~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~--iIGinnr 186 (452)
T 1pii_A 117 IIDPY-QIYLARYYQADACLLMLSVLDDD-QYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAK--VVGINNR 186 (452)
T ss_dssp CCSHH-HHHHHHHTTCSEEEEETTTCCHH-HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCS--EEEEESE
T ss_pred cCCHH-HHHHHHHcCCCEEEEEcccCCHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCC--EEEEeCC
Confidence 44444 67777777876777777777765 678889999999986 5789999999999655443 6788754
No 256
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=27.26 E-value=1.1e+02 Score=19.96 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=18.5
Q ss_pred HHHHHHcCceeEEEEec------CCChhhHHhhHHHHHHhCCCC
Q 033058 42 ATKTLNRGISEFIVMAA------DTEPLEILLHLPLLAEDKNVP 79 (128)
Q Consensus 42 v~kai~~~kakLVilA~------D~~p~~~~~~l~~lc~~~~IP 79 (128)
+.+.|+++ ++||... .| |. -.....+-++++||
T Consensus 9 v~~~i~~~--~Vvvfsk~t~~~p~C-p~--C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 9 IEDAIESA--PVVLFMKGTPEFPKC-GF--SRATIGLLGNQGVD 47 (121)
T ss_dssp HHHHHHSC--SEEEEESBCSSSBCT-TH--HHHHHHHHHHHTBC
T ss_pred HHHHhccC--CEEEEEeccCCCCCC-cc--HHHHHHHHHHcCCC
Confidence 34444444 3455555 45 42 46666666777888
No 257
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=27.23 E-value=82 Score=24.12 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCce--eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGIS--EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~ka--kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..+...+++|++. ....++.+.+...+. +..++--..++......+..+|+++||.++-+.
T Consensus 145 ~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 217 (331)
T 1s1p_A 145 CTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYS 217 (331)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEEeCCCHHHHHHHHHhcCccCCCceeeeecCCCcChHHHHHHHHHcCCEEEEec
Confidence 45677888888999864 455677777776655 444444444543223578999999999986543
No 258
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=27.19 E-value=1.2e+02 Score=25.10 Aligned_cols=38 Identities=8% Similarity=-0.134 Sum_probs=23.7
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
..++.|.+-.+.+||++.|+++. .. + ++.++||..+..
T Consensus 264 ~~le~I~~~g~~vvi~~~~I~~~-al-~---~L~~~~I~av~~ 301 (513)
T 3iyg_B 264 EKVERILKHGINCFINRQLIYNY-PE-Q---LFGAAGVMAIEH 301 (513)
T ss_pred HHHHHHHhcCCCEEEEcCCccHH-HH-H---HHHHcCceEEec
Confidence 45566666668899999999876 22 2 333455554443
No 259
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.15 E-value=1.2e+02 Score=19.17 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=16.8
Q ss_pred hHHHHHHhCCCCEEEe--C-C---HHHHhHHh
Q 033058 68 HLPLLAEDKNVPYVFV--P-S---KQALGRAC 93 (128)
Q Consensus 68 ~l~~lc~~~~IP~~~~--~-s---k~eLG~a~ 93 (128)
+...+.++++|+|..+ . + +++|....
T Consensus 29 ~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp HHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 5777778888998554 2 2 23566664
No 260
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=27.10 E-value=1.5e+02 Score=20.16 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhC----CCCEEE-eCCHHHHhHHhCCC
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDK----NVPYVF-VPSKQALGRACGVT 96 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~----~IP~~~-~~sk~eLG~a~G~~ 96 (128)
..+.++...+.+|.|+.|. +. .+..+++++ ++++-. .+...++.++.|..
T Consensus 56 ~~~~~~~~~v~vv~Is~d~-~~----~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~ 110 (186)
T 1n8j_A 56 HYEELQKLGVDVYSVSTDT-HF----THKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 110 (186)
T ss_dssp HHHHHHHTTEEEEEEESSC-HH----HHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEECCC-HH----HHHHHHHHcCcccCCceeEEECCchHHHHHhCCc
Confidence 3344445568889998885 32 234566777 776543 34557889998875
No 261
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=27.06 E-value=1.2e+02 Score=19.10 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHhCCCCEEEeCCHHHHhHH----------hCCCCceEEEEEecCCchHHHHHHHHHHHHHh
Q 033058 69 LPLLAEDKNVPYVFVPSKQALGRA----------CGVTRPVIACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 69 l~~lc~~~~IP~~~~~sk~eLG~a----------~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
+...+...++|++.+.+|.+|-.. +........+-+--....++.++.+.+...+.
T Consensus 100 i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 334444568999999888776321 10111112233333344566666666655543
No 262
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=27.00 E-value=1.1e+02 Score=19.76 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=12.0
Q ss_pred CCCCEEEeCCHHHH
Q 033058 76 KNVPYVFVPSKQAL 89 (128)
Q Consensus 76 ~~IP~~~~~sk~eL 89 (128)
.++|++.+.+|.+|
T Consensus 117 ~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 117 ETFPFVILGNKIDA 130 (182)
T ss_dssp TTCCEEEEEECTTS
T ss_pred CCCcEEEEEECCcc
Confidence 78999999888776
No 263
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=26.94 E-value=1.1e+02 Score=22.40 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=28.1
Q ss_pred ccccHHH----HHHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANE----ATKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~----v~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-. ++++++++. +.++.+-+|-... .-..+|+++|||+..+.
T Consensus 13 l~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a----~~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 13 FISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEA----GGLAKAEAAGIATQVFK 64 (209)
T ss_dssp EESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTC----THHHHHHHTTCCEEECC
T ss_pred EEECCcHHHHHHHHHHHcCCCCcEEEEEEECCccc----HHHHHHHHcCCCEEEeC
Confidence 4455443 555566664 5666666653211 12478999999998764
No 264
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=26.88 E-value=45 Score=22.92 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHcCceeEEEEecCCCh--hhHHhhHHHHHHhCCCCEEEeCC
Q 033058 37 KGANEATKTLNRGISEFIVMAADTEP--LEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 37 ~G~~~v~kai~~~kakLVilA~D~~p--~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
-|....++.+++|++..||+. +.+- +++...+..+++++||.++++..
T Consensus 53 p~l~~ll~~~~~g~id~vvv~-~ldRL~R~~~~~l~~~l~~~gv~~~~~~~ 102 (154)
T 3lhk_A 53 KNYKKLLKMVMNRKVEKVIIA-YPDRLTRFGFETLKEFFKSYGTEIVIINK 102 (154)
T ss_dssp HHHHHHHHHHHTTCEEEEEES-SHHHHCSSCHHHHHHHHHHTTCEEEESCS
T ss_pred HHHHHHHHHHHcCCCCEEEEE-eCCcccccHHHHHHHHHHHCCCEEEEEeC
Confidence 456888888899988776664 2221 11233455789999999888754
No 265
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=26.57 E-value=50 Score=25.04 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=28.4
Q ss_pred HHHHHHHHcCceeEEEEec-CCChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAA-DTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~-D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++. .+.++|++.+ ...|. -.+.+..+|++++++++.
T Consensus 119 ~~l~~~i~-~~~~~v~~~~~~g~~~-~~~~i~~l~~~~~~~li~ 160 (390)
T 3b8x_A 119 ESLKEAVT-DSTKAILTVNLLGNPN-NFDEINKIIGGRDIILLE 160 (390)
T ss_dssp HHHHHHCC-TTEEEEEEECGGGCCC-CHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHhC-cCCeEEEEECCccChh-hHHHHHHHHHHcCCEEEE
Confidence 45555664 3678888864 33444 368899999999998764
No 266
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=26.53 E-value=1.2e+02 Score=25.15 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=13.9
Q ss_pred HHHHHHcCceeEEEEecCCChh
Q 033058 42 ATKTLNRGISEFIVMAADTEPL 63 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~ 63 (128)
..+.|.+-.+.+||++.|+++.
T Consensus 268 ~v~kI~~~g~nvvi~~~~I~d~ 289 (529)
T 3iyg_A 268 RIQKILATGANVILTTGGIDDM 289 (529)
T ss_pred HHHHHHhcCCCEEEECCCCCHH
Confidence 3444444556788888887764
No 267
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=26.51 E-value=96 Score=21.47 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=31.6
Q ss_pred cHHHHHHHHHcC--ceeEEEEecCCC-----------h-------hhHHhhHHHHHHhCCCCEEEeC
Q 033058 38 GANEATKTLNRG--ISEFIVMAADTE-----------P-------LEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 38 G~~~v~kai~~~--kakLVilA~D~~-----------p-------~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..++.++.+++. .++++++..-.. . .++...+..+|+++++|++-+.
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~ 181 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLY 181 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecc
Confidence 555666666655 577777654211 0 2367788899999999998764
No 268
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=26.47 E-value=86 Score=23.84 Aligned_cols=65 Identities=5% Similarity=-0.141 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..|...+++|++. ....++.+++.....+..++--..++.+....+..+|+++||.++-+.
T Consensus 131 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 201 (298)
T 1vp5_A 131 HCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHEIVPAVNQIEIHPFYQRQEEIEFMRNYNIQPEAWG 201 (298)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHCCCEEEEec
Confidence 35677788888899864 356677777776555434443344444333568899999999987654
No 269
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=26.47 E-value=77 Score=24.58 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHHHHHHHHc---CceeEEEEecC-------CChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNR---GISEFIVMAAD-------TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~---~kakLVilA~D-------~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++++ ++.++|++-.. ..+.+..+.+..+|+++++.++.
T Consensus 205 ~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~ 258 (449)
T 3a8u_X 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258 (449)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEE
Confidence 4455666654 45667766432 12234578999999999998775
No 270
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=26.47 E-value=77 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHHHHHHcCceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNRGISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++.++++ .+.++|++..=.+ +.+..+.+.++|++++++++.=
T Consensus 173 ~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D 222 (392)
T 3ruy_A 173 EALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVAD 222 (392)
T ss_dssp HHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34455554 6788888854221 2224789999999999998753
No 271
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=26.46 E-value=52 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=29.0
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
+..+||.|.|. .. ....+.+.|..+++|++..++.
T Consensus 124 ~~DvVi~~~d~-~~-~r~~ln~~c~~~~iplI~~~~~ 158 (531)
T 1tt5_A 124 RFTVVVATQLP-ES-TSLRLADVLWNSQIPLLICRTY 158 (531)
T ss_dssp GCSEEEEESCC-HH-HHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEeCCC-HH-HHHHHHHHHHHcCCCEEEEEec
Confidence 47899999886 44 6899999999999999987544
No 272
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=26.37 E-value=65 Score=26.45 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=26.2
Q ss_pred HHHHHHHHHcC--ceeEEEEec-CCCh-h--hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRG--ISEFIVMAA-DTEP-L--EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~--kakLVilA~-D~~p-~--~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.+.++|++. ....+|++. .+.. . +=.+.+-++|++||||++.
T Consensus 184 ~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~V 233 (450)
T 3bc8_A 184 LKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233 (450)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEE
Confidence 55677777552 233333332 2221 1 2257888999999999864
No 273
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=26.36 E-value=56 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.3
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhH
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGR 91 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~ 91 (128)
+.+.++|+--|++..+....+.....+.++|++.+.+|.++-.
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 4555555555655433334444555566899888888877654
No 274
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=26.31 E-value=90 Score=24.25 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=29.5
Q ss_pred HHHHHHHHHc--CceeEEEEecC------C-ChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNR--GISEFIVMAAD------T-EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~--~kakLVilA~D------~-~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++++ ++.++|++-.. . .+.+..+.+..+|++|++.++.
T Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 188 IEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3455666664 46677776432 1 2234678999999999998765
No 275
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=26.25 E-value=86 Score=24.38 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHH---cCceeEEEEecC------CC-hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLN---RGISEFIVMAAD------TE-PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~---~~kakLVilA~D------~~-p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.++++ ..+..+||+-.. .- +.+..+.+.++|++|++.++.
T Consensus 201 ~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~ 254 (452)
T 3n5m_A 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLIS 254 (452)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEE
Confidence 456667776 356777777654 11 334688999999999998875
No 276
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=26.19 E-value=78 Score=23.22 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHc-----CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNR-----GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~-----~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.. .+.++|++..=.+ |.+-.+.+.++|++++++++.
T Consensus 116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~ 171 (347)
T 1jg8_A 116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 171 (347)
T ss_dssp HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEe
Confidence 3556677764 2678888842221 212357888999999999865
No 277
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=26.10 E-value=92 Score=23.94 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHHHc--CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR--GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~--~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
..+.+++++ .+..+|++-.... +.+..+.+.++|+++++.++.
T Consensus 190 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~ 241 (434)
T 3l44_A 190 ETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455666654 3556666543311 223578999999999998875
No 278
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=25.97 E-value=42 Score=24.80 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CCccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHH
Q 033058 33 KQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 33 g~lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eL 89 (128)
|-=+.|.++..+.+++.++..+|+|--.. ....+.+.|.+.||.-+.-++...|
T Consensus 131 GvpV~~~~dL~~~v~~~~Id~vIIAvPs~---~aq~v~d~lv~~GIk~I~nFap~~l 184 (212)
T 3keo_A 131 GIPVYGISTINDHLIDSDIETAILTVPST---EAQEVADILVKAGIKGILSFSPVHL 184 (212)
T ss_dssp CCBEEEGGGHHHHC-CCSCCEEEECSCGG---GHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred CeEEeCHHHHHHHHHHcCCCEEEEecCch---hHHHHHHHHHHcCCCEEEEcCCccc
Confidence 33456788999999999999999997432 3467889999999999888876665
No 279
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=25.84 E-value=1.2e+02 Score=25.04 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=29.3
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eL 89 (128)
...++.|.+-.+.+||++.|+++. . ..++.++||-.+..-++.+|
T Consensus 228 ~~~le~I~~~g~~lvi~~~~I~~~-a----l~~L~~~~I~av~~~~k~~l 272 (500)
T 3aq1_B 228 REMAEKVIASGANVVFCQKGIDDM-A----QYYIEKAGIYAVRRVKKSDL 272 (500)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCHH-H----HHHHHHTTCEEECSCCHHHH
T ss_pred HHHHHHHHHhCcCEEEECCCcCHH-H----HHHHHHCCEEEEEeCCHHHH
Confidence 456667777778899999999875 2 23334567766655455433
No 280
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=25.81 E-value=92 Score=21.07 Aligned_cols=21 Identities=24% Similarity=0.168 Sum_probs=16.2
Q ss_pred HHhhHHHHHHhCCCCEEEeCC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~s 85 (128)
+-..+..+|++++++++-+.+
T Consensus 164 ~n~~~~~~a~~~~v~~iD~~~ 184 (216)
T 2q0q_A 164 LARVYSALASFMKVPFFDAGS 184 (216)
T ss_dssp HHHHHHHHHHHHTCCEEEGGG
T ss_pred HHHHHHHHHHHcCCcEEchhH
Confidence 345677899999999987653
No 281
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=25.80 E-value=1.2e+02 Score=20.38 Aligned_cols=48 Identities=6% Similarity=0.125 Sum_probs=26.5
Q ss_pred CCCCEEEeCCHHHHhHH----------hCCCCceEEEEEec-CCchHHHHHHHHHHHHH
Q 033058 76 KNVPYVFVPSKQALGRA----------CGVTRPVIACSVTS-NEASQLKTQIQQLKDAI 123 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG~a----------~G~~~~~~~v~i~~-~~~~~~~~li~~i~~~~ 123 (128)
.++|++.+++|.+|-.. +-.......+-+-- ....++.++.+.+...+
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 68999999988887432 10111222222322 34466777776665554
No 282
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=25.80 E-value=1.8e+02 Score=20.69 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=33.4
Q ss_pred CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHh
Q 033058 49 GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVFVPSKQALGRAC 93 (128)
Q Consensus 49 ~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~ 93 (128)
-+-.++++=.|.+ |..+...+..+|-.+++++++..|.++-++.+
T Consensus 79 ~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l 130 (219)
T 2bgw_A 79 YETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVI 130 (219)
T ss_dssp CSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHH
T ss_pred cCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHH
Confidence 3445555556643 55678888899999999999999988866554
No 283
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=25.78 E-value=1.3e+02 Score=22.75 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+..+.+.+..++++++|.+.... . -+..+-+..+||++-+.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~-~--~l~~lr~~~~iPVigii 117 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATA-V--ALEEIKAALPIPVVGVI 117 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEESS
T ss_pred HHHHHHHHCCCCEEEEeCcchhH-H--HHHHHHHhCCCCEEccc
Confidence 44566667779999999988542 1 34566677799998743
No 284
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=25.70 E-value=1.6e+02 Score=20.79 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=53.4
Q ss_pred HHcCCccccHHHHHHHHHcCceeEEEEecCCChh-hHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCC-CceEEEEEecC
Q 033058 30 ANYKQLKKGANEATKTLNRGISEFIVMAADTEPL-EILLHLPLLAEDKNVPYVFVPSKQALGRACGVT-RPVIACSVTSN 107 (128)
Q Consensus 30 ~~ag~lv~G~~~v~kai~~~kakLVilA~D~~p~-~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~-~~~~~v~i~~~ 107 (128)
|--.+|+-|. ++...+.-.+..+++++|.-.. ++.+.+..++.-.||.+.++. -++.-..+... ..--+..+..
T Consensus 11 RIDdRLIHGQ--~~~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i~s-ve~ai~~~~~~~~~~~v~il~k- 86 (163)
T 3p3v_A 11 RVDERLIHGQ--GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFS-IQKVIDIIHKASPAQSIFIVVK- 86 (163)
T ss_dssp EEETTGGGST--HHHHHHHTTCSEEEEECHHHHHCHHHHHHHGGGSCTTSEEEEEC-HHHHHHHGGGCCTTCEEEEEES-
T ss_pred EEcccchhhh--hhhhhhhcCCCEEEEEcccccCCHHHHHHHHhhCCCCceEEEEE-HHHHHHHHhccCCCceEEEEEC-
Confidence 3346789999 8999999999999999997433 367777888888888875544 44444444321 1112233333
Q ss_pred CchHHHHHHH
Q 033058 108 EASQLKTQIQ 117 (128)
Q Consensus 108 ~~~~~~~li~ 117 (128)
.-.++.++++
T Consensus 87 ~p~d~~~lv~ 96 (163)
T 3p3v_A 87 DLQDAKLLVE 96 (163)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 2355666554
No 285
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=25.61 E-value=42 Score=27.61 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=20.8
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
|+++. +...+..+|+++||||-++.
T Consensus 367 ~~~~~-~~~~~~~ia~~~~Ip~Q~~~ 391 (450)
T 2glf_A 367 DAHAE-FVARVRKVLNEQGVIWQVAT 391 (450)
T ss_dssp BCCHH-HHHHHHHHHHHTTCCEEECC
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence 46776 88999999999999996643
No 286
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=25.60 E-value=1.1e+02 Score=18.02 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=15.7
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++...+..|. -..+..+.++++|++..+
T Consensus 8 v~ly~~~~C~~--C~~~~~~L~~~~i~~~~~ 36 (92)
T 2khp_A 8 VIIYTRPGCPY--CARAKALLARKGAEFNEI 36 (92)
T ss_dssp EEEEECTTCHH--HHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCChh--HHHHHHHHHHcCCCcEEE
Confidence 44444333343 355566666777877543
No 287
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=25.53 E-value=2.3e+02 Score=23.29 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHH-cCCcc--------ccHHHHHHHHHc------CceeEEEEecCCChhhHHhhHHHHHHhCCCCE
Q 033058 16 SNLTITILDLVQQAAN-YKQLK--------KGANEATKTLNR------GISEFIVMAADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 16 ~~~~~~i~~lL~~a~~-ag~lv--------~G~~~v~kai~~------~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
.+.-+++..+-...+. ...+| .|-+.+.++++. +..++.+++.+++|. ....+...+.-...-+
T Consensus 59 ~~~l~~i~~~a~~vr~~~~~vV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~~~~fv~dnvDp~-~i~~~l~~l~~~~Tl~ 137 (446)
T 3ff1_A 59 KEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSST-YTKELVDYLADKDFSV 137 (446)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCHH-HHHHHHHHGGGCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecchhHHHHHHHHHHHcchhhcccCCceEEEEecCCCHH-HHHHHHHhcCccceEE
Confidence 3444555555554443 22333 578999999976 346788888899998 5666666666555555
Q ss_pred EEeC----CHHH----------HhHHhCCC---CceEEEEEecCCchHHHHHHH
Q 033058 81 VFVP----SKQA----------LGRACGVT---RPVIACSVTSNEASQLKTQIQ 117 (128)
Q Consensus 81 ~~~~----sk~e----------LG~a~G~~---~~~~~v~i~~~~~~~~~~li~ 117 (128)
+.+. |-|- |-+..|.+ .+ .++++++.++.+.++.+
T Consensus 138 iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h--~vavT~~~~g~L~~~a~ 189 (446)
T 3ff1_A 138 NVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKR--IFATTDKEKGALKQLAT 189 (446)
T ss_dssp EEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHH--EEEEECSSCSHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHhcCcccccce--EEEEeCCCcchhhhHHH
Confidence 4432 2232 33344533 23 46778887666655543
No 288
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=25.45 E-value=1.1e+02 Score=23.72 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.+.++++..+.++|++-..-+ +.+..+.+.++|+++++.++.
T Consensus 201 ~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 251 (433)
T 1z7d_A 201 LEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA 251 (433)
T ss_dssp HHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34566667556677777643211 122578899999999999875
No 289
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.43 E-value=1.1e+02 Score=21.39 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=34.3
Q ss_pred ChhHHHHHHH-HHHHHHHcCC-cc--c------cHHHHHHHHHcCceeEEEEe-cCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 15 DSNLTITILD-LVQQAANYKQ-LK--K------GANEATKTLNRGISEFIVMA-ADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 15 ~~~~~~~i~~-lL~~a~~ag~-lv--~------G~~~v~kai~~~kakLVilA-~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+......+++ +-..|.+.|. +. . ...+..+.+..+++.-+|+. .+.. . ......+.+.+||++.+
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~---~~~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 13 ENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPP-E---DDSYRELQDKGLPVIAI 88 (272)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S---CCHHHHHHHTTCCEEEE
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccc-c---HHHHHHHHHcCCCEEEE
Confidence 3444444544 4444555664 11 1 12344555656666544544 3321 1 22344567789999987
Q ss_pred CC
Q 033058 84 PS 85 (128)
Q Consensus 84 ~s 85 (128)
++
T Consensus 89 ~~ 90 (272)
T 3o74_A 89 DR 90 (272)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 290
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=25.41 E-value=65 Score=21.34 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=25.0
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRA 92 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a 92 (128)
.+.++++.-|.+..+-...+.......++|++.+.+|.++-..
T Consensus 85 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 85 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 3555566566543222233334445578898888888777543
No 291
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=25.40 E-value=49 Score=27.96 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=23.8
Q ss_pred eeEEEEecCCC-------h--hhHHhhHHHHHHhCCCCEEEe
Q 033058 51 SEFIVMAADTE-------P--LEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 51 akLVilA~D~~-------p--~~~~~~l~~lc~~~~IP~~~~ 83 (128)
--..|||+|.. + .+-..+|..+|.++|+|++++
T Consensus 338 ~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~l 379 (531)
T 3n6r_B 338 RTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTL 379 (531)
T ss_dssp EEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEecccccCCCCCHHHHHHHHHHHHHhhccCCCEEEE
Confidence 34678888832 1 134578889999999999874
No 292
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=25.36 E-value=75 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=21.3
Q ss_pred cCCChhhHHhhHHHHHHhCCCCEEEeC---CH---HHHhHHhCCC
Q 033058 58 ADTEPLEILLHLPLLAEDKNVPYVFVP---SK---QALGRACGVT 96 (128)
Q Consensus 58 ~D~~p~~~~~~l~~lc~~~~IP~~~~~---sk---~eLG~a~G~~ 96 (128)
..|.+ -..+..+.++++|+|..+. +. ++|-...|..
T Consensus 30 ~~C~~---C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 71 (105)
T 2yan_A 30 AKCGF---SKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP 71 (105)
T ss_dssp BCTTH---HHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred CCCcc---HHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCC
Confidence 66743 3566666777889975543 21 2455556653
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=25.36 E-value=62 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.2
Q ss_pred CCCCEEEeCCHHHH
Q 033058 76 KNVPYVFVPSKQAL 89 (128)
Q Consensus 76 ~~IP~~~~~sk~eL 89 (128)
.++|++.+++|.+|
T Consensus 127 ~~~piilv~nK~Dl 140 (191)
T 3dz8_A 127 DNAQVILVGNKCDM 140 (191)
T ss_dssp TTCEEEEEEECTTC
T ss_pred CCCCEEEEEECCCC
Confidence 58999988887765
No 294
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.27 E-value=1.4e+02 Score=21.67 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+.+...++.-+|+ ..|.+. ... ....+.+.+||++.+.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~--~~~-~~~~~~~~~iPvV~~~~ 90 (313)
T 2h3h_A 50 LESFIAEGVNGIAIAPSDPTA--VIP-TIKKALEMGIPVVTLDT 90 (313)
T ss_dssp HHHHHHTTCSEEEECCSSTTT--THH-HHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCChHH--HHH-HHHHHHHCCCeEEEeCC
Confidence 34444456655555 444322 222 23445678999988754
No 295
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=25.22 E-value=95 Score=22.62 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=22.4
Q ss_pred HHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++.+...++.-+|+ +.|. + ........+.+.+||++.+++
T Consensus 52 i~~~~~~~vdgiIi~~~~~-~--~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 52 IENMVTKGVKVLVIASIDG-T--TLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHTCSEEEECCSSG-G--GGHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHcCCCEEEEEcCCc-h--hHHHHHHHHHHCCCCEEEECC
Confidence 33333444544444 4443 2 234445667788999988763
No 296
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=25.19 E-value=1.4e+02 Score=24.78 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=24.6
Q ss_pred HHHHHHcCceeEEEEecCC-----ChhhHHhhHHHHHHhCCCCEEEeCCHH
Q 033058 42 ATKTLNRGISEFIVMAADT-----EPLEILLHLPLLAEDKNVPYVFVPSKQ 87 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~-----~p~~~~~~l~~lc~~~~IP~~~~~sk~ 87 (128)
.++.|.+-.+.+||++.|+ ++. . ..++.+++|..+..-++.
T Consensus 274 ~le~I~~~g~~vvi~~~~I~~~a~~~~-a----l~~L~~~~I~av~~~~k~ 319 (528)
T 3p9d_D 274 ICKKIKKAKCNVLLIQKSILRDAVNDL-A----LHFLSKLNIMVVKDIERE 319 (528)
T ss_dssp HHHHHHHTTCCEEEESSCSCTTSCSCH-H----HHHHTTTSCCEEECCCTH
T ss_pred HHHHHHhcCCCEEEEeCCcccccCCHH-H----HHHHHHcCcEEEEeCCHH
Confidence 3444444556788888888 654 2 334456777776654443
No 297
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=24.90 E-value=82 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=29.3
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+..+.+.+..++++++|.+.... . -+..+-+..+||++-+.
T Consensus 75 ~~~~~L~~~g~d~IVIaCNTas~-~--~l~~lr~~~~iPVigi~ 115 (286)
T 2jfq_A 75 EIARKLMEFDIKMLVIACNTATA-V--ALEYLQKTLSISVIGVI 115 (286)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHH-H--HHHHHHHHCSSEEEESH
T ss_pred HHHHHHHHCCCCEEEEeCCchhH-H--HHHHHHHhCCCCEEecc
Confidence 44566667779999999998653 2 24566677799998743
No 298
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.89 E-value=1.7e+02 Score=20.60 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++.+..+++.-+|+ +.|.+. . ......+.+.+||++.+++
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~--~-~~~~~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 50 VQDLTVRGTKILLINPTDSDA--V-GNAVKMANQANIPVITLDR 90 (271)
T ss_dssp HHHHTTTTEEEEEECCSSTTT--T-HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCChHH--H-HHHHHHHHHCCCcEEEecC
Confidence 44555566655555 444322 1 2233455678999988764
No 299
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=24.84 E-value=76 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 44 KTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 44 kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+.+.+..++.+++|.+.... . -+..+-+..+||++-+
T Consensus 56 ~~L~~~g~d~iviaCNTa~~-~--~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 56 DFFKPHEIELLIVACNTASA-L--ALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHGGGCCSCEEECCHHHHH-H--THHHHHHHCSSCEECS
T ss_pred HHHHHCCCCEEEEeCchhhH-H--HHHHHHHhCCCCEEee
Confidence 34556679999999988653 1 3566667789999873
No 300
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=24.63 E-value=1.4e+02 Score=20.08 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=36.8
Q ss_pred cHHHHHHHHHc-----CceeEEEEecCCChh-hHHhhHHHHHHhCCCCEE--EeCCHHHHhHHhCCCCce
Q 033058 38 GANEATKTLNR-----GISEFIVMAADTEPL-EILLHLPLLAEDKNVPYV--FVPSKQALGRACGVTRPV 99 (128)
Q Consensus 38 G~~~v~kai~~-----~kakLVilA~D~~p~-~~~~~l~~lc~~~~IP~~--~~~sk~eLG~a~G~~~~~ 99 (128)
+...+.+.+++ ...++-++-+.++++ .....+...++++++|+. .++....+.++...-.++
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v 182 (206)
T 4dzz_A 113 SAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSV 182 (206)
T ss_dssp HHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCc
Confidence 34445555543 234445666666543 133566777777888876 566777888886555443
No 301
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=24.62 E-value=1.1e+02 Score=19.92 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=13.3
Q ss_pred HHHHHhCCCCEEEeCCHHHH
Q 033058 70 PLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 70 ~~lc~~~~IP~~~~~sk~eL 89 (128)
.......++|++.+.+|.+|
T Consensus 102 ~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 102 KRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp HHHTTCSCCCEEEEEECTTS
T ss_pred HHhcCCCCCcEEEEEECccC
Confidence 33444568998888777654
No 302
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=24.61 E-value=1e+02 Score=17.45 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=9.1
Q ss_pred hhHHHHHHhCCCCEEE
Q 033058 67 LHLPLLAEDKNVPYVF 82 (128)
Q Consensus 67 ~~l~~lc~~~~IP~~~ 82 (128)
..+..+.++++|++..
T Consensus 15 ~~~~~~l~~~~i~~~~ 30 (82)
T 1fov_A 15 HRAKALLSSKGVSFQE 30 (82)
T ss_dssp HHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHCCCCcEE
Confidence 4445555566777644
No 303
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.60 E-value=50 Score=21.68 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.8
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+.-+|+++.-+.-. .+.+...|..++||+..++.
T Consensus 52 ~~~DvvLLgPQV~y~--~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 52 GVYDLIILAPQVRSY--YREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp GGCSEEEECGGGGGG--HHHHHHHHTTTTCEEEECCH
T ss_pred cCCCEEEEChHHHHH--HHHHHHHhhhcCCcEEEeCH
Confidence 347788888877543 68888889999999877664
No 304
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=24.59 E-value=1.6e+02 Score=20.86 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 44 KTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 44 kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+.+.+..+..+++|.+..+. . ..+.+..+||++.+
T Consensus 69 ~~l~~~g~d~iviaCnta~~--~---~~l~~~~~iPvi~i 103 (228)
T 2eq5_A 69 KEFEREGVDAIIISCAADPA--V---EKVRKLLSIPVIGA 103 (228)
T ss_dssp HHHHHTTCSEEEECSTTCTT--H---HHHHHHCSSCEEEH
T ss_pred HHHHHCCCCEEEEeCCchHH--H---HHHHHhCCCCEeCc
Confidence 34556679999999998732 3 34445669998874
No 305
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=24.54 E-value=1.6e+02 Score=19.54 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=29.9
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCC-E-EEeCCHHHHhHHhCC
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVP-Y-VFVPSKQALGRACGV 95 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP-~-~~~~sk~eLG~a~G~ 95 (128)
+..+......+.+|.+..|.+. ...+..++++++++ + +......++.+.+|.
T Consensus 84 ~l~~~~~~~~~~vv~v~~d~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 137 (186)
T 1jfu_A 84 ELQGKLSGPNFEVVAINIDTRD---PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA 137 (186)
T ss_dssp HHHHHHCBTTEEEEEEECCCSC---TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred HHHHHhccCCcEEEEEECCCCC---HHHHHHHHHHcCCCCCceEECCcchHHHHhcc
Confidence 3344444456888888887542 13345566777663 2 233444677777766
No 306
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=24.51 E-value=45 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+..++..+++++|||++.-. .|.+++-
T Consensus 82 ~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 108 (137)
T 3bzs_A 82 KALQIIKLAELYDIPVIEDI---PLARSLY 108 (137)
T ss_dssp HHHHHHHHHHHHTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCH---HHHHHHH
Confidence 68999999999999997654 5666554
No 307
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=24.42 E-value=71 Score=24.96 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC-CH----HHHhHHhCC
Q 033058 43 TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP-SK----QALGRACGV 95 (128)
Q Consensus 43 ~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~-sk----~eLG~a~G~ 95 (128)
++.+-.+..-.||++.+-.|. +.+...|++++||+.... +. .+|..++..
T Consensus 73 ler~l~~~~P~IIltrg~~~p---eelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPP---EELIEAAKEHETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCC---HHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEeCCCCCC---HHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHH
Confidence 334445678888899887764 567899999999987765 22 245555543
No 308
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=24.32 E-value=1.4e+02 Score=21.11 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=24.9
Q ss_pred HHHHHHHHcCceeEEEEe-cCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 40 NEATKTLNRGISEFIVMA-ADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA-~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+..+.+..+++.-+|+. .+.+. .....+.+.+||++.+++
T Consensus 59 ~~~~~~~~~~~vdgiIi~~~~~~~-----~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILLYSREND-----RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHTTCCCEEEESCCBTTC-----HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHHCCCCEEEECC
Confidence 345666666776555554 33322 234556778999988764
No 309
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=24.32 E-value=92 Score=24.00 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHc--CceeEEEEecC-------CChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR--GISEFIVMAAD-------TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~--~kakLVilA~D-------~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++++ ++.++|++-.. ..+.+..+.+..+|++++++++.
T Consensus 191 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 242 (434)
T 2epj_A 191 EALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 455566654 46677776322 11344689999999999999864
No 310
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=24.29 E-value=47 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+..++..+++++|||++.-. .|.+++-
T Consensus 72 ~A~~I~~~A~e~~VPi~e~~---~LAr~Ly 98 (123)
T 2jli_A 72 QVQTVRKIAEEEGVPILQRI---PLARALY 98 (123)
T ss_dssp HHHHHHHHHHHHTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCH---HHHHHHH
Confidence 68999999999999997654 5555544
No 311
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=24.22 E-value=1.6e+02 Score=24.29 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=15.9
Q ss_pred HHHHHHcCceeEEEEecCCChh
Q 033058 42 ATKTLNRGISEFIVMAADTEPL 63 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~ 63 (128)
.++.|.+-.+.+||++.|+++.
T Consensus 266 ~lekI~~~g~~vvi~~~~I~~~ 287 (515)
T 3iyg_E 266 MIRQIKETGANLAVCQWGFDDE 287 (515)
T ss_pred HHHHHHhcCCCEEEEeCCCCHH
Confidence 4555555567899999999865
No 312
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=24.22 E-value=1.4e+02 Score=22.59 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=26.7
Q ss_pred HHHHHHHHc--CceeEEEEecC------CChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR--GISEFIVMAAD------TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~--~kakLVilA~D------~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
++..+++++ ....++++.+= +-+.+-.+.+.++|+++++.++.
T Consensus 171 ~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 171 AGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 566777763 34555555221 11223467789999999998764
No 313
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=24.16 E-value=2.3e+02 Score=21.25 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.1
Q ss_pred ccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCC-EEEeCCHHHHhHHhCC-CCceEEEEEecCC
Q 033058 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVP-YVFVPSKQALGRACGV-TRPVIACSVTSNE 108 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP-~~~~~sk~eLG~a~G~-~~~~~~v~i~~~~ 108 (128)
++.++ |+..+-.-|---.++++.--++. ....+...|++.|.. ++.+.|.+|+-++.-. ... .++|...+
T Consensus 110 i~~~~-qi~ea~~~GAD~ilLi~a~l~~~-~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~--iIGinnr~ 181 (251)
T 1i4n_A 110 YIDTV-QVKLASSVGADAILIIARILTAE-QIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPK--IIGINTRD 181 (251)
T ss_dssp CCSTH-HHHHHHHTTCSEEEEEGGGSCHH-HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCS--EEEEECBC
T ss_pred CCCHH-HHHHHHHcCCCEEEEecccCCHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCC--EEEEeCcc
Confidence 44555 67777777765666666665665 678889999999986 5789999999999766 433 67887644
No 314
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=24.14 E-value=2.5e+02 Score=21.64 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=50.0
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHHHHc-CCcc----ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCC
Q 033058 3 GEAVNPKAYPLADSNLTITILDLVQQAANY-KQLK----KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKN 77 (128)
Q Consensus 3 ~~~~~p~~~P~~~~~~~~~i~~lL~~a~~a-g~lv----~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~ 77 (128)
|+-..|=+.|...++-.+++..+++..+.. +-.+ +-.+....+++.| +.++ +|++....-..+..++.+++
T Consensus 84 geStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~~~~V~~aAl~aG-a~iI---Ndvsg~~~d~~m~~~aa~~g 159 (297)
T 1tx2_A 84 GESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAG-AHII---NDIWGAKAEPKIAEVAAHYD 159 (297)
T ss_dssp SCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHHHT-CCEE---EETTTTSSCTHHHHHHHHHT
T ss_pred CCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHcC-CCEE---EECCCCCCCHHHHHHHHHhC
Confidence 444557777776677778888888776654 4322 4555666677776 3443 77776422356677889999
Q ss_pred CCEEEeCC
Q 033058 78 VPYVFVPS 85 (128)
Q Consensus 78 IP~~~~~s 85 (128)
+|+|....
T Consensus 160 ~~vVlmh~ 167 (297)
T 1tx2_A 160 VPIILMHN 167 (297)
T ss_dssp CCEEEECC
T ss_pred CcEEEEeC
Confidence 99988764
No 315
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=24.09 E-value=1e+02 Score=20.46 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=27.8
Q ss_pred CCCCEEEeCCHHHHhH---------HhCC----CCceEEEEEecCCchHHHHHHHHHHHHHhh
Q 033058 76 KNVPYVFVPSKQALGR---------ACGV----TRPVIACSVTSNEASQLKTQIQQLKDAIEK 125 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG~---------a~G~----~~~~~~v~i~~~~~~~~~~li~~i~~~~~~ 125 (128)
.++|++.+.+|.+|-. .++. ......+-+--....++.++.+.+...+.+
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 6899999888766633 2221 123333334333446777777777666544
No 316
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=24.03 E-value=49 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh-hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL-EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~-~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+.+.++|++.+-..|. .-.+.+.++|++++++++.
T Consensus 152 ~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~ 196 (407)
T 2dkj_A 152 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV 196 (407)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEE
Confidence 3556667765467888884222221 1257888999999998765
No 317
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=23.97 E-value=67 Score=23.87 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhC--CCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDK--NVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~--~IP~~~ 82 (128)
.+++.+++...+.++|++..=..| .+-...+..+|+++ |+.++.
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 355666676646778887522222 12367778889888 887654
No 318
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=23.95 E-value=82 Score=24.82 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCE
Q 033058 40 NEATKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPY 80 (128)
Q Consensus 40 ~~v~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~ 80 (128)
..+.+++.+..++.||+ ++..++. ...++..+|+++++.+
T Consensus 94 ~ai~ea~~~~Gv~~vViiT~G~~e~-~~~~l~~~a~~~g~rl 134 (334)
T 3mwd_B 94 DSTMETMNYAQIRTIAIIAEGIPEA-LTRKLIKKADQKGVTI 134 (334)
T ss_dssp HHHHHHTTSTTCCEEEECCSCCCHH-HHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHHHHcCCEE
Confidence 56678887455655554 7777775 6788889999988844
No 319
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=23.90 E-value=1.9e+02 Score=20.69 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=32.4
Q ss_pred HHHHHHHHcCceeEEEEecCCChhh---------HHhhHHHHHHhCCCCEEEeCCHHHH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLE---------ILLHLPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~---------~~~~l~~lc~~~~IP~~~~~sk~eL 89 (128)
+++++.+.+.++.+||++.|..... ....+...-+..++|+..+...-|.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3445555567899999999986431 1133445555678999887655555
No 320
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=23.88 E-value=1.9e+02 Score=20.30 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHh---CCCCEEE-eCCHHHHhHHhCCC
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAED---KNVPYVF-VPSKQALGRACGVT 96 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~---~~IP~~~-~~sk~eLG~a~G~~ 96 (128)
+..+.++...+.+|.|..|.... .......+.+. +++++-. .+...++.+..|..
T Consensus 94 ~l~~~~~~~~v~vv~Is~D~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~ 152 (222)
T 3ztl_A 94 DQVEEFNSRNCQVIACSTDSQYS-HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVF 152 (222)
T ss_dssp HTHHHHHTTTEEEEEEESSCHHH-HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCB
T ss_pred HHHHHHHHCCCEEEEEECCCHHH-HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCe
Confidence 33444554558888888876332 32222222221 1566533 34457899998885
No 321
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=23.87 E-value=1.6e+02 Score=21.91 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+..+.+.+..++++++|-+.... --+..+-+..+||++-+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~---~~l~~lr~~~~iPVigi 99 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAA---ATLAALQEALSIPVIGV 99 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHH---HHHHHHHHHCCCCEEec
Confidence 345566667779999999988542 12556667789999864
No 322
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=23.78 E-value=1.1e+02 Score=23.85 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=28.5
Q ss_pred HHHHHHHHcCceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.++++..+.++|++-..-+ +.+..+.+..+|+++|+.++.
T Consensus 213 ~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 262 (439)
T 2oat_A 213 PALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262 (439)
T ss_dssp HHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4555666545677777643211 222578999999999998875
No 323
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=23.76 E-value=83 Score=24.18 Aligned_cols=43 Identities=5% Similarity=0.054 Sum_probs=28.5
Q ss_pred HHHHHHHHc---CceeEEEEecCCC--------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR---GISEFIVMAADTE--------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~---~kakLVilA~D~~--------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
..+.+++++ ++..+|++-...+ +.+..+.+.++|+++++.++.
T Consensus 177 ~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (430)
T 3i4j_A 177 EGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIA 230 (430)
T ss_dssp THHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455666664 5566666654332 223468899999999998875
No 324
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=23.71 E-value=1.3e+02 Score=23.09 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHcC--ceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRG--ISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~--kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.++.++++.. +..+|++-.... +.+..+.+..+|+++++.++.
T Consensus 187 ~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 238 (427)
T 3fq8_A 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238 (427)
T ss_dssp HHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556666653 566776655332 123478999999999998875
No 325
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=23.70 E-value=57 Score=23.44 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCE-EEeC----CHHHHhHH
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPY-VFVP----SKQALGRA 92 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~----sk~eLG~a 92 (128)
.||++++.+-. +.++....++++|||| +.+- +.+++-+.
T Consensus 7 ~Iimgs~SD~~-v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~ 50 (163)
T 3ors_A 7 AVIMGSSSDWK-IMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQF 50 (163)
T ss_dssp EEEESCGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHH
T ss_pred EEEECcHHHHH-HHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHH
Confidence 45666676665 8999999999999998 3443 33555444
No 326
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.68 E-value=1.2e+02 Score=23.42 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccccHHHHHHHHH----cCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANEATKTLN----RGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~v~kai~----~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-.++.+|- .|+ +.++.+-+|-... ..+|+++|||+..++
T Consensus 101 l~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~------~~~A~~~gIp~~~~~ 150 (292)
T 3lou_A 101 MVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDF------APLAAQHGLPFRHFP 150 (292)
T ss_dssp EECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTT------HHHHHHTTCCEEECC
T ss_pred EEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHH------HHHHHHcCCCEEEeC
Confidence 5677766666653 453 5677666666332 246999999998765
No 327
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=23.67 E-value=1.1e+02 Score=23.02 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCcc------ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 21 TILDLVQQAANYKQLK------KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 21 ~i~~lL~~a~~ag~lv------~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
..+..|...+++|++. ....++.+++.......++.--...+......+..+|+++||.++.+.
T Consensus 128 e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a~s 197 (290)
T 4gie_A 128 DTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAWS 197 (290)
T ss_dssp HHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHCCCcceeeecCCCHHHHHHHHHhccCCCceeeEeccccchhHHHHHHHHHcCceEeeec
Confidence 3566777788899865 456677777777665554444334444345678899999999987543
No 328
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=23.65 E-value=51 Score=24.88 Aligned_cols=44 Identities=5% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+.+.++|++..=.+|. .-.+.+.++|++++++++.
T Consensus 125 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 125 PEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIV 171 (416)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 4567777775567888877532221 0147789999999998765
No 329
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=23.64 E-value=48 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=21.5
Q ss_pred HHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 65 ILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 65 ~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+..++..+++++|||++.-. .|.+++-
T Consensus 81 ~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 107 (144)
T 2jlj_A 81 QVQTVRKIAEEEGVPILQRI---PLARALY 107 (144)
T ss_dssp HHHHHHHHHHHHTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCH---HHHHHHH
Confidence 68999999999999997654 5666554
No 330
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=23.61 E-value=87 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCceeEEE-Eec--C----CChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIV-MAA--D----TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVi-lA~--D----~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.++..+++++.+.++|+ +.+ + +-+.+..+.+.++|++++++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 34566677665677775 433 1 11223457889999999999864
No 331
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=23.59 E-value=84 Score=23.93 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCce--eEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 20 ITILDLVQQAANYKQLK------KGANEATKTLNRGIS--EFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 20 ~~i~~lL~~a~~ag~lv------~G~~~v~kai~~~ka--kLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+..+...+++|++. ....++.+.+..... +..++=-..+|......+..+|+++||.++-+.
T Consensus 145 ~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 217 (323)
T 1afs_A 145 CDTWEAMEKCKDAGLAKSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYC 217 (323)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHcCCcCEEEeeCCCHHHHHHHHHhcCcCCCCEEEeeccccccchHHHHHHHHHcCCEEEEec
Confidence 45777888888999864 456677777776655 444444444443223578999999999986543
No 332
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=23.58 E-value=1.7e+02 Score=19.67 Aligned_cols=46 Identities=9% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHcCce-eEEEEecCCChhhHHhhHHHHHHhCCCC--EEEe-CCHHHHhHHhCCC
Q 033058 46 LNRGIS-EFIVMAADTEPLEILLHLPLLAEDKNVP--YVFV-PSKQALGRACGVT 96 (128)
Q Consensus 46 i~~~ka-kLVilA~D~~p~~~~~~l~~lc~~~~IP--~~~~-~sk~eLG~a~G~~ 96 (128)
++...+ .+|-|+.|. +. ....+++++++| +-.+ +...+++++.|..
T Consensus 62 ~~~~gv~~vv~Is~d~-~~----~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 62 IHGKGVDIIACMAVND-SF----VMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHTTCCEEEEEESSC-HH----HHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHCCCCEEEEEeCCC-HH----HHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 444558 889998874 32 345677788887 6444 4457899999875
No 333
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=23.56 E-value=1.8e+02 Score=22.20 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHHHHcCCcc----ccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCC
Q 033058 3 GEAVNPKAYPLADSNLTITILDLVQQAANYKQLK----KGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV 78 (128)
Q Consensus 3 ~~~~~p~~~P~~~~~~~~~i~~lL~~a~~ag~lv----~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~I 78 (128)
|+...|-+.|+..++-.+++..+++..+..+-.+ +-.+....+++.|. .+| +|++....-..+..++.++++
T Consensus 50 gestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT~~~~va~aAl~aGa-~iI---Ndvsg~~~d~~m~~~~a~~~~ 125 (280)
T 1eye_A 50 GESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGA-QMV---NDVSGGRADPAMGPLLAEADV 125 (280)
T ss_dssp CC--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTC-CEE---EETTTTSSCTTHHHHHHHHTC
T ss_pred CccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeCCCHHHHHHHHHcCC-CEE---EECCCCCCCHHHHHHHHHhCC
Confidence 4455577777877777788999998877664322 56667778888874 333 666643123567788999999
Q ss_pred CEEEeCC
Q 033058 79 PYVFVPS 85 (128)
Q Consensus 79 P~~~~~s 85 (128)
|+|....
T Consensus 126 ~vVlmh~ 132 (280)
T 1eye_A 126 PWVLMHW 132 (280)
T ss_dssp CEEEECC
T ss_pred eEEEEcC
Confidence 9988653
No 334
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=23.54 E-value=1.6e+02 Score=21.00 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=22.2
Q ss_pred HHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+.+...++.-+|+... ++. ........+.+.+||++.+.+
T Consensus 54 ~~~l~~~~vdgiii~~~-~~~-~~~~~~~~~~~~~ipvV~~~~ 94 (303)
T 3d02_A 54 IEDLIARKVDAITIVPN-DAN-VLEPVFKKARDAGIVVLTNES 94 (303)
T ss_dssp HHHHHHTTCSEEEECCS-CHH-HHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHcCCCEEEEecC-ChH-HHHHHHHHHHHCCCeEEEEec
Confidence 34444455655555443 222 223334556678899887754
No 335
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=23.49 E-value=49 Score=25.96 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh-hHHhhHHHHHHhCCCCEEEe
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL-EILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~-~~~~~l~~lc~~~~IP~~~~ 83 (128)
.+++.++++..+.++|++..-..|. .-.+.+.++|+++++.++.=
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~D 219 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVD 219 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEE
Confidence 3566667765567788884332222 13588899999999987653
No 336
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=23.32 E-value=51 Score=24.92 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCceeEEEEec-C-CChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAA-D-TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~-D-~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+.+.++|++.. + .... -.+.+..+|++++++++.
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~~G~~~-~l~~i~~l~~~~~~~li~ 197 (417)
T 3n0l_A 153 YEKVREIAKKEKPKLIVCGASAYARVI-DFAKFREIADEIGAYLFA 197 (417)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCC-CHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEECCcccCccC-CHHHHHHHHHHcCCEEEE
Confidence 35666777655677777643 2 2222 257889999999998765
No 337
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.27 E-value=1.2e+02 Score=22.26 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=27.9
Q ss_pred ccccHHHH----HHHHHcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANEA----TKTLNRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~v----~kai~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-.. +++++++. +.++.+-+|-... .-...|+++|||+..+.
T Consensus 14 l~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a----~~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 14 LISGRGSNLEALAKAFSTEESSVVISCVISNNAEA----RGLLIAQSYGIPTFVVK 65 (215)
T ss_dssp EESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTC----THHHHHHHTTCCEEECC
T ss_pred EEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcch----HHHHHHHHcCCCEEEeC
Confidence 45665544 44555554 5677666664221 12478999999998764
No 338
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.25 E-value=1.3e+02 Score=18.26 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHcCceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEEeCC
Q 033058 36 KKGANEATKTLNRGISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 36 v~G~~~v~kai~~~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.....+..+.+++....+||+--+.... ++.+.+.......++|++.+.+
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 33 AADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 3556777888888999999997655432 2334433322245899877643
No 339
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=23.24 E-value=58 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=22.8
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCEE
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPYV 81 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~~ 81 (128)
.||.+++.+-. +.++....++++||||-
T Consensus 10 ~IimgS~SD~~-v~~~a~~~l~~~gi~~e 37 (169)
T 3trh_A 10 AILMGSDSDLS-TMETAFTELKSLGIPFE 37 (169)
T ss_dssp EEEESCGGGHH-HHHHHHHHHHHTTCCEE
T ss_pred EEEECcHHhHH-HHHHHHHHHHHcCCCEE
Confidence 46667777665 89999999999999983
No 340
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=23.19 E-value=1.5e+02 Score=18.86 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=28.2
Q ss_pred ceeEEEEecCCC--hhhHHhhHHHHHHhCCCCEE-EeCCHHH------HhHHhCCCC
Q 033058 50 ISEFIVMAADTE--PLEILLHLPLLAEDKNVPYV-FVPSKQA------LGRACGVTR 97 (128)
Q Consensus 50 kakLVilA~D~~--p~~~~~~l~~lc~~~~IP~~-~~~sk~e------LG~a~G~~~ 97 (128)
.+.+|-+..|-. +.+....+..+++++++++- ......+ +.+..|...
T Consensus 64 ~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~ 120 (160)
T 3lor_A 64 QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEG 120 (160)
T ss_dssp TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCS
T ss_pred CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCc
Confidence 366666665421 01234666777788888753 2333334 888888764
No 341
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=23.05 E-value=79 Score=23.28 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++.. .++|++.+=..| .+-...+..+|++++++++.
T Consensus 136 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 136 EDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp HHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 566677765 778887443222 22467888899999998875
No 342
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=23.01 E-value=1.3e+02 Score=25.02 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=22.2
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCH
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk 86 (128)
..++.|.+-.+.+||++.|+++. . ..++.++||-.+..-++
T Consensus 276 ~~le~I~~~g~~lvi~~~~I~~~-a----l~~L~~~~I~av~~v~k 316 (543)
T 1a6d_B 276 EMVDKIKSVGANVVITQKGIDDM-A----QHYLSRAGIYAVRRVKK 316 (543)
T ss_dssp HHHHHHHHTTCCEEEESSCBCHH-H----HHHHHHTTCEEECSCCH
T ss_pred HHHHHHHHcCCCEEEECCCcCHH-H----HHHHHHCCeeEeccCCH
Confidence 34455555556788888888765 2 22233455555443333
No 343
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=22.94 E-value=48 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=24.0
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCEE-EeC
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPYV-FVP 84 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~ 84 (128)
.||.+++.+-. +.++....+++++|||- .+-
T Consensus 6 ~Iimgs~SD~~-v~~~a~~~l~~~gi~~ev~V~ 37 (159)
T 3rg8_A 6 IILMGSSSDMG-HAEKIASELKTFGIEYAIRIG 37 (159)
T ss_dssp EEEESSGGGHH-HHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEECcHHHHH-HHHHHHHHHHHcCCCEEEEEE
Confidence 46667777665 89999999999999983 343
No 344
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=22.93 E-value=1.4e+02 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.++++++ .++|++.+=..| .+-...+.++|++++++++.
T Consensus 140 ~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 140 LHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp HHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45666777665 566666532222 12467888889999998864
No 345
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=22.86 E-value=1.1e+02 Score=22.62 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHHHHHHcCceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++. .+.++|++..=.+ +.+..+.+.++|+++|++++.
T Consensus 145 ~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 145 EKLRQLIR-PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp HHHHHHCC-TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHhhc-cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44555554 4677777752111 223478899999999998864
No 346
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.69 E-value=1.7e+02 Score=20.65 Aligned_cols=69 Identities=9% Similarity=0.099 Sum_probs=33.6
Q ss_pred CChhHHHHHHHHHH-HHHHcCC-ccc---c-----HHHHHHHHHcCceeEEEEe-cCCChhhHHhhHHHHHHhCCCCEEE
Q 033058 14 ADSNLTITILDLVQ-QAANYKQ-LKK---G-----ANEATKTLNRGISEFIVMA-ADTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 14 ~~~~~~~~i~~lL~-~a~~ag~-lv~---G-----~~~v~kai~~~kakLVilA-~D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+......+.+-+. .+.+.|. ++. + ..+..+.+...++.-+|+. .|.+. ... ....+.+.+||++.
T Consensus 12 ~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~-~~~~~~~~~iPvV~ 88 (290)
T 2fn9_A 12 LNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADG--SIA-NVKRAKEAGIPVFC 88 (290)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTT--THH-HHHHHHHTTCCEEE
T ss_pred CCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH--HHH-HHHHHHHCCCeEEE
Confidence 34445555555444 4455564 221 1 1223444455566555554 44322 222 23445668999987
Q ss_pred eCC
Q 033058 83 VPS 85 (128)
Q Consensus 83 ~~s 85 (128)
+++
T Consensus 89 ~~~ 91 (290)
T 2fn9_A 89 VDR 91 (290)
T ss_dssp ESS
T ss_pred Eec
Confidence 754
No 347
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=22.66 E-value=57 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.1
Q ss_pred CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 49 GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 49 ~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.++|++...-. +.+-.+.+.++|++++++++.
T Consensus 182 ~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~ 222 (406)
T 4adb_A 182 DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIF 222 (406)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5678888764321 222478899999999999875
No 348
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.64 E-value=67 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.9
Q ss_pred ccccHHHHHHHHHcCceeEEE
Q 033058 35 LKKGANEATKTLNRGISEFIV 55 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVi 55 (128)
+..-..+|.++|++|++.+|+
T Consensus 36 L~~kv~qv~~qL~~GeavIvf 56 (78)
T 1y0n_A 36 LDVRVERARHALRRGEAVILF 56 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEE
Confidence 344567899999999998887
No 349
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=22.62 E-value=57 Score=24.50 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHHHcCceeEEEEecCCCh------hhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTEP------LEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p------~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++.. +.++|++.+=..| .+-.+.+..+|++++++++.
T Consensus 159 ~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 159 RSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp GGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 345556654 5788887422222 22467788999999998764
No 350
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.45 E-value=1.7e+02 Score=20.75 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 43 TKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 43 ~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
++.+..+++.-+|+ +.|.+. ... ....+.+.+||++.+++
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~--~~~-~~~~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 50 VEDLIQQKVDVLLINPVDSDA--VVT-AIKEANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHTTCSEEEECCSSTTT--THH-HHHHHHHTTCCEEEESS
T ss_pred HHHHHHcCCCEEEEeCCchhh--hHH-HHHHHHHCCCeEEEecC
Confidence 44444566654444 444322 122 33456778999988753
No 351
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=22.37 E-value=1.8e+02 Score=20.67 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=28.6
Q ss_pred HHHcCceeEEEEecCCChhhHHhhHHHHHHhC-------CCCEEE-eCCHHHHhHHhCC
Q 033058 45 TLNRGISEFIVMAADTEPLEILLHLPLLAEDK-------NVPYVF-VPSKQALGRACGV 95 (128)
Q Consensus 45 ai~~~kakLVilA~D~~p~~~~~~l~~lc~~~-------~IP~~~-~~sk~eLG~a~G~ 95 (128)
.++...+.+|.|+.|.... +..+++++ ++++-. .+...++.+..|.
T Consensus 85 ~~~~~~v~vv~Is~D~~~~-----~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv 138 (221)
T 2c0d_A 85 DFENKNVELLGISVDSVYS-----HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138 (221)
T ss_dssp HHHHTTEEEEEEESSCHHH-----HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTC
T ss_pred HHHHCCCEEEEEeCCCHHH-----HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCC
Confidence 3444568888888875322 34455555 566533 3445689999987
No 352
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=22.36 E-value=1.3e+02 Score=23.39 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHHHHHH--cCceeEEEEecCC-C-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLN--RGISEFIVMAADT-E-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~--~~kakLVilA~D~-~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.++++ ..+..+||+-.-. + +.+..+.+.++|++|++.++.
T Consensus 198 ~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 250 (448)
T 3dod_A 198 RELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250 (448)
T ss_dssp HHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEE
Confidence 45566665 3456666665432 1 223578999999999999875
No 353
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=22.33 E-value=1.7e+02 Score=19.32 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCceeEEEEecCC------C--------hhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGISEFIVMAADT------E--------PLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~------~--------p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.++.++.+++..++++++.--. . -..+-..+..+|++++++++-+.
T Consensus 103 ~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~ 162 (204)
T 3p94_A 103 LVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYH 162 (204)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchh
Confidence 3445555665667777774210 0 01245668889999999987543
No 354
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Probab=22.23 E-value=62 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=23.5
Q ss_pred eEEEEecCCC-------h--hhHHhhHHHHHHhCCCCEEEe
Q 033058 52 EFIVMAADTE-------P--LEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 52 kLVilA~D~~-------p--~~~~~~l~~lc~~~~IP~~~~ 83 (128)
-..|||+|.. | .+-..++..+|.++|+|++++
T Consensus 333 ~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~l 373 (530)
T 3iav_A 333 PVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTF 373 (530)
T ss_dssp EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4678898842 1 124578889999999999874
No 355
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=22.20 E-value=1.6e+02 Score=24.71 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=36.9
Q ss_pred HHHHHHHHcCceeEEEE-ecCCChhh---HHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCC
Q 033058 40 NEATKTLNRGISEFIVM-AADTEPLE---ILLHLPLLAEDKNVPYVFVPSKQALGRACGVT 96 (128)
Q Consensus 40 ~~v~kai~~~kakLVil-A~D~~p~~---~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~ 96 (128)
+.+.++++.| +.+|-+ ..|.+..+ ..+.+..+|+++++|++ +.+.-+|-.++|-+
T Consensus 29 ~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~li-IND~~dlA~~~gAd 87 (540)
T 3nl6_A 29 GQVEAGLQNG-VTLVQIREKDADTKFFIEEALQIKELCHAHNVPLI-INDRIDVAMAIGAD 87 (540)
T ss_dssp HHHHHHHHTT-CSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEE-ECSCSHHHHHTTCS
T ss_pred HHHHHHHHCC-CCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEE-EeCcHHHHHHcCCC
Confidence 4455566666 666666 55655442 45677889999999965 45667777777654
No 356
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=22.20 E-value=1.4e+02 Score=22.85 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHc-------CceeEEE-Eec--C----CChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR-------GISEFIV-MAA--D----TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~-------~kakLVi-lA~--D----~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+.+.+++++ .+.++|+ +.. + +-+.+..+.+.++|++++++++.
T Consensus 170 ~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 170 NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 445666655 3678875 433 1 11223467889999999998764
No 357
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=22.16 E-value=81 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.6
Q ss_pred hhHHHHHHhCCCCEEEeCCHHHHhH
Q 033058 67 LHLPLLAEDKNVPYVFVPSKQALGR 91 (128)
Q Consensus 67 ~~l~~lc~~~~IP~~~~~sk~eLG~ 91 (128)
.-+..+|+++++|+.++ +.++|..
T Consensus 54 ~gL~e~A~~lgvPl~~~-~~eeL~~ 77 (155)
T 3by5_A 54 AGLAEAAKGLSLSLEIV-AQERLEA 77 (155)
T ss_dssp HHHHHHHHHTTCCEEEC-CHHHHHH
T ss_pred HHHHHHHHHhCCCeEEE-CHHHHhh
Confidence 56789999999998775 5666654
No 358
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=22.14 E-value=82 Score=20.84 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.........|..+.|+=+.|-+. ...+...+++.|+|+..+-
T Consensus 39 ~~~~~W~~~g~~kivlk~~~e~~---l~~l~~~a~~~gl~~~~i~ 80 (115)
T 2zv3_A 39 RAVDEWLREGQKKVVVKVNSEKE---LIDIYNKARSEGLPCSIIR 80 (115)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH---HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHCCCeEEEEecCCHHH---HHHHHHHHHHcCCCEEEEE
Confidence 44555556788888887776432 4677788889999986653
No 359
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=22.13 E-value=1.3e+02 Score=21.26 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCceeEEEEecCCCh
Q 033058 39 ANEATKTLNRGISEFIVMAADTEP 62 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p 62 (128)
.+.+++.++..++-+||++.|...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 345666666678999999999853
No 360
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=21.92 E-value=1.1e+02 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHc--CceeEEEEec----CC-----ChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR--GISEFIVMAA----DT-----EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~--~kakLVilA~----D~-----~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++.+ .+..+||+-. .. ++ +..+.+.++|+++++.++.
T Consensus 221 ~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~-~~l~~l~~l~~~~gillI~ 273 (457)
T 3tfu_A 221 AAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP-RYLHDLRDICRRYEVLLIF 273 (457)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSEECTTTCEECCT-HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCH-HHHHHHHHHHHHcCCEEEE
Confidence 344555553 5567777665 11 23 3689999999999998875
No 361
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.91 E-value=80 Score=24.22 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=28.6
Q ss_pred ccccHHHHHHHH----HcCc--eeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANEATKTL----NRGI--SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~v~kai----~~~k--akLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-.++.+| +.|+ +.++.+-+|-.. . ..+|+++|||+..++
T Consensus 96 l~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~--~----~~~A~~~gIp~~~~~ 145 (286)
T 3n0v_A 96 MVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD--L----EPLAHWHKIPYYHFA 145 (286)
T ss_dssp EESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST--T----HHHHHHTTCCEEECC
T ss_pred EEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH--H----HHHHHHcCCCEEEeC
Confidence 557776666665 3453 567777666532 2 246899999988764
No 362
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=21.88 E-value=1.3e+02 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=12.4
Q ss_pred CCCCEEEeCCHHHHh
Q 033058 76 KNVPYVFVPSKQALG 90 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG 90 (128)
.++|++.+.+|.+|-
T Consensus 129 ~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 129 PNIVVILCGNKKDLD 143 (200)
T ss_dssp TTCEEEEEEECGGGG
T ss_pred CCCcEEEEEECCCcc
Confidence 589999999888774
No 363
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=21.87 E-value=1.9e+02 Score=21.81 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=45.6
Q ss_pred CccccCCCChhHH--------------HHHHHHHHHHHHcCC---ccccH-H---------HHHHHHHcCceeEEEEecC
Q 033058 7 NPKAYPLADSNLT--------------ITILDLVQQAANYKQ---LKKGA-N---------EATKTLNRGISEFIVMAAD 59 (128)
Q Consensus 7 ~p~~~P~~~~~~~--------------~~i~~lL~~a~~ag~---lv~G~-~---------~v~kai~~~kakLVilA~D 59 (128)
.|+.+|+++-..- +.++++++..++.-. +..|+ + .+..+...| +.- ++..|
T Consensus 50 ~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG-~dG-viv~D 127 (271)
T 1ujp_A 50 LPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAG-ATG-VILPD 127 (271)
T ss_dssp CCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHT-CCE-EECTT
T ss_pred CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcC-CCE-EEecC
Confidence 4888897775443 235566666666522 22222 2 122233444 332 33458
Q ss_pred CChhhHHhhHHHHHHhCCCCEEE---eCC-HHHHhHHhCCCCc
Q 033058 60 TEPLEILLHLPLLAEDKNVPYVF---VPS-KQALGRACGVTRP 98 (128)
Q Consensus 60 ~~p~~~~~~l~~lc~~~~IP~~~---~~s-k~eLG~a~G~~~~ 98 (128)
..+. ....+...|++++++.++ ..+ .+.+-........
T Consensus 128 l~~e-e~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~g 169 (271)
T 1ujp_A 128 LPPD-EDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATG 169 (271)
T ss_dssp CCGG-GCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCS
T ss_pred CCHH-HHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCC
Confidence 8775 678888999999876544 223 3455554444444
No 364
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=21.82 E-value=65 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.1
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCE-EEeCC----HHHHhHH
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPY-VFVPS----KQALGRA 92 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~s----k~eLG~a 92 (128)
.||.+++.+-. +.++....++++|||| +.+-| .+++-+.
T Consensus 11 ~IimgS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~ 54 (174)
T 3lp6_A 11 GVIMGSDSDWP-VMADAAAALAEFDIPAEVRVVSAHRTPEAMFSY 54 (174)
T ss_dssp EEEESCGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred EEEECcHHhHH-HHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHH
Confidence 45666666665 8999999999999998 33433 3445444
No 365
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=21.76 E-value=1.1e+02 Score=25.41 Aligned_cols=23 Identities=0% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHHHHHcCceeEEEEecCCChh
Q 033058 41 EATKTLNRGISEFIVMAADTEPL 63 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~ 63 (128)
..++.|.+-.+.+||++.|+++.
T Consensus 275 ~~le~I~~~g~~lvi~~~~I~~~ 297 (545)
T 1a6d_A 275 QMVEKIKKSGANVVLCQKGIDDV 297 (545)
T ss_dssp HHHHHHHHTTCCEEEESSCBCHH
T ss_pred HHHHHHHHhCCCEEEECCCccHH
Confidence 44555555567788888888765
No 366
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=21.72 E-value=1.1e+02 Score=20.55 Aligned_cols=49 Identities=8% Similarity=0.046 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHc-------CceeEEEEecCCChhhH--HhhHHHHHHhCCCCEEEe
Q 033058 35 LKKGANEATKTLNR-------GISEFIVMAADTEPLEI--LLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 35 lv~G~~~v~kai~~-------~kakLVilA~D~~p~~~--~~~l~~lc~~~~IP~~~~ 83 (128)
+-.|.+.+.+.+.. +..+.||+-.|..+.+- .......+++.+|+++.+
T Consensus 100 ~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~i 157 (178)
T 2xgg_A 100 TSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEE
Confidence 55666777666521 34688999999877632 334445556667776554
No 367
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=27.25 E-value=19 Score=23.14 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=23.9
Q ss_pred EEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhC
Q 033058 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 (128)
Q Consensus 54 VilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G 94 (128)
+|+|.=.+. +..++...++++|||++.-. .|.+++-
T Consensus 19 ~VvAKG~~~--~A~~I~e~A~e~~VPi~e~~---~LAr~Ly 54 (87)
T 3b1s_B 19 VVVAKGKGT--IAQKIVEIAENYSIPVVRKP---ELARALY 54 (87)
Confidence 344444433 57899999999999986543 4555543
No 368
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=21.59 E-value=75 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhC-CCCEEEe
Q 033058 41 EATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDK-NVPYVFV 83 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~-~IP~~~~ 83 (128)
+..+.+.+..++++++|.|+... --+..+-+.. +||++-+
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~---~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISA---IAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHH---HHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHCCCCEEEEeCCChHH---HHHHHHHHhcCCCCEEec
Confidence 34556677789999999887442 2335555666 8999874
No 369
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=21.53 E-value=67 Score=22.91 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCE-EEeC----CHHHHhHHh
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPY-VFVP----SKQALGRAC 93 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~----sk~eLG~a~ 93 (128)
.||.+++.+-. +.++....++++|||| +.+- +.+++-+..
T Consensus 3 ~Iimgs~SD~~-v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~ 47 (157)
T 2ywx_A 3 CIIMGSESDLK-IAEKAVNILKEFGVEFEVRVASAHRTPELVEEIV 47 (157)
T ss_dssp EEEESSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHH
T ss_pred EEEEccHHHHH-HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHH
Confidence 46778888776 8999999999999998 3444 335554443
No 370
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=21.53 E-value=81 Score=21.63 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCC------h-----hhHHhhHHHHHHhCCCCEEEeCC
Q 033058 39 ANEATKTLNRGISEFIVMAADTE------P-----LEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~------p-----~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
..+.++.+++. ++++++.--.. + ..+-..+..+|++++++++-+.+
T Consensus 119 l~~li~~l~~~-~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~ 175 (218)
T 1vjg_A 119 TREILTQAKKL-YPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFP 175 (218)
T ss_dssp HHHHHHHHHHH-SCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTG
T ss_pred HHHHHHHHHHh-CcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHH
Confidence 34444555554 67777754211 1 12556778899999999987653
No 371
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=21.53 E-value=26 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=17.8
Q ss_pred HHHHHhCCCCEEEeCCHHHHhH
Q 033058 70 PLLAEDKNVPYVFVPSKQALGR 91 (128)
Q Consensus 70 ~~lc~~~~IP~~~~~sk~eLG~ 91 (128)
...|++++||+-.++++....+
T Consensus 29 vaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 29 CSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp HHHHHHTTCCGGGTSCHHHHHH
T ss_pred hhhhhhcCCCHHHHhhHHHHHh
Confidence 5899999999988888765543
No 372
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=21.46 E-value=1.7e+02 Score=18.85 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=30.2
Q ss_pred ceeEEEEecCCC---------------hhhHHhhHHHHHHhCCC-CEEEeCCHHHHhHHhCCCC
Q 033058 50 ISEFIVMAADTE---------------PLEILLHLPLLAEDKNV-PYVFVPSKQALGRACGVTR 97 (128)
Q Consensus 50 kakLVilA~D~~---------------p~~~~~~l~~lc~~~~I-P~~~~~sk~eLG~a~G~~~ 97 (128)
.+.++.+..|.. +. ....+..+.+++++ ++-.+.+..++.+..|...
T Consensus 68 ~v~vv~i~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~ 130 (165)
T 3ha9_A 68 EISVIAIDFWTAEALKALGLNKPGYPPPD-TPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRS 130 (165)
T ss_dssp TEEEEEEECCSHHHHHHHTCCSTTSCCCC-CHHHHHHHHHHHSCTTSEEEECCSHHHHHTTCCS
T ss_pred CcEEEEEEecccccccccccccccCCCCC-CHHHHHHHHHHcCCCCeeEEeChHHHHHHhCCCC
Confidence 577777777720 01 34566667777777 5544333778999999874
No 373
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=21.37 E-value=1.6e+02 Score=20.11 Aligned_cols=47 Identities=13% Similarity=-0.003 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 35 lv~G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
...+..++++.+++.-. .|++|.--++. ....+..+++++++|+..+
T Consensus 25 ~~~~~~~al~~l~~~G~-~iii~TgR~~~-~~~~~~~~l~~~gi~~~~I 71 (142)
T 2obb_A 25 EIPFAVETLKLLQQEKH-RLILWSVREGE-LLDEAIEWCRARGLEFYAA 71 (142)
T ss_dssp BCTTHHHHHHHHHHTTC-EEEECCSCCHH-HHHHHHHHHHTTTCCCSEE
T ss_pred cCHHHHHHHHHHHHCCC-EEEEEeCCCcc-cHHHHHHHHHHcCCCeEEE
Confidence 34566777777765434 45555555554 5677888899999987433
No 374
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=21.36 E-value=1.1e+02 Score=23.85 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHcCceeEEEEecC-CChhhHHhhHHHHHHhCCCC-EEEeCCHHHH
Q 033058 41 EATKTLNRGISEFIVMAAD-TEPLEILLHLPLLAEDKNVP-YVFVPSKQAL 89 (128)
Q Consensus 41 ~v~kai~~~kakLVilA~D-~~p~~~~~~l~~lc~~~~IP-~~~~~sk~eL 89 (128)
.+...+..-.+-++++..+ .....+..+ ..+++..++| ++.+.+|.+|
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g~~~qt~~~-l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADGPMPQTREH-ILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCHHHHHH-HHHHHHTTCCCEEEEEECGGG
T ss_pred HHHHHHHHCCEEEEEEECCCCCcHHHHHH-HHHHHHcCCCEEEEEEECccc
Confidence 4445555445555555543 222224444 4567778999 6665555443
No 375
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=21.31 E-value=56 Score=24.19 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=35.1
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCC---CCceEEEEEecCC-chHHHHHH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV---TRPVIACSVTSNE-ASQLKTQI 116 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~---~~~~~~v~i~~~~-~~~~~~li 116 (128)
.+-+||.|.|..+ +-..+-..|+ ++||+..+.+. +++...=- ++.-..++|..++ +..++..+
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~p-~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~i 157 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASSF-SDGNIQIPAQFSRGRLSLAISTDGASPLLTKRI 157 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CCSEECCEEEEETTEEEEEECTTSCHHHHHHH
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCCc-ccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHH
Confidence 4788999988754 4677888888 99997666553 34432111 1222356776544 44554443
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=21.31 E-value=1.2e+02 Score=19.38 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=26.0
Q ss_pred CCCCEEEeCCHHHHhHHhC----------CCCceEEEEEecCCchHHHHHHHHHHHHH
Q 033058 76 KNVPYVFVPSKQALGRACG----------VTRPVIACSVTSNEASQLKTQIQQLKDAI 123 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG~a~G----------~~~~~~~v~i~~~~~~~~~~li~~i~~~~ 123 (128)
.++|++.+.+|.+|-..-. .......+-+--....++.++.+.+...+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 5799999888877743210 01122223333333456666666665554
No 377
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=21.29 E-value=2.4e+02 Score=20.53 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=26.5
Q ss_pred ccccHHHH----HHHHHcC-ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 35 LKKGANEA----TKTLNRG-ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 35 lv~G~~~v----~kai~~~-kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++|.-.. ++++++| .+.++.+-+|-... .-...|+++|||+..+
T Consensus 11 l~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a----~~~~~A~~~gIp~~~~ 60 (215)
T 3tqr_A 11 LISGNGTNLQAIIGAIQKGLAIEIRAVISNRADA----YGLKRAQQADIPTHII 60 (215)
T ss_dssp EESSCCHHHHHHHHHHHTTCSEEEEEEEESCTTC----HHHHHHHHTTCCEEEC
T ss_pred EEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcch----HHHHHHHHcCCCEEEe
Confidence 44555444 4445554 35666665553221 1147899999999875
No 378
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=21.27 E-value=87 Score=24.02 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHc---CceeEEEEecC---C----ChhhHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNR---GISEFIVMAAD---T----EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~---~kakLVilA~D---~----~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.+.+++++ ++.++|++-.. . .+.+..+.+.++|+++++.++.
T Consensus 189 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 242 (433)
T 1zod_A 189 LDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL 242 (433)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence 3455566654 45667776332 1 1223578899999999998765
No 379
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=21.25 E-value=2.7e+02 Score=20.99 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=42.2
Q ss_pred ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCCCCceEEEEEe-cCCchHHHHHHHHHHH
Q 033058 50 ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT-SNEASQLKTQIQQLKD 121 (128)
Q Consensus 50 kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~~~~~~~v~i~-~~~~~~~~~li~~i~~ 121 (128)
.+.+||++.=+++. ......++++|||++.- .+-|++.+.+..+ +++|+ .+++.....++..+-.
T Consensus 66 ~~d~vV~Spgi~~~---~p~~~~a~~~gi~v~~~--~e~~~~~~~~~~~--~IaVTGTnGKTTTt~ll~~iL~ 131 (326)
T 3eag_A 66 KADVYVIGNVAKRG---MDVVEAILNLGLPYISG--PQWLSENVLHHHW--VLGVAGTHGKTTTASMLAWVLE 131 (326)
T ss_dssp CCSEEEECTTCCTT---CHHHHHHHHTTCCEEEH--HHHHHHHTGGGSE--EEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcCCC---CHHHHHHHHcCCcEEeH--HHHHHHHHhcCCC--EEEEECCCCHHHHHHHHHHHHH
Confidence 46788887777654 34456788999998643 3456765333333 57776 5666777777776644
No 380
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=21.22 E-value=1.4e+02 Score=19.79 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCCCEEEeCCHHHHhHH----------hCCCCceEEEEEecCCchHHHHHHHHHHHHHh
Q 033058 76 KNVPYVFVPSKQALGRA----------CGVTRPVIACSVTSNEASQLKTQIQQLKDAIE 124 (128)
Q Consensus 76 ~~IP~~~~~sk~eLG~a----------~G~~~~~~~v~i~~~~~~~~~~li~~i~~~~~ 124 (128)
.++|++.+.+|.+|-.. +........+-+--....++.++.+.+...+.
T Consensus 129 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 48999999888777432 11112232333333334566666666655543
No 381
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=21.20 E-value=1.4e+02 Score=23.26 Aligned_cols=45 Identities=22% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHc--CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 41 EATKTLNR--GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 41 ~v~kai~~--~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
.+.+++.+ ..+..+++-.-....+.++.+..+.++.|||++...+
T Consensus 252 ~l~~ai~~~~~~~~~~~iD~K~~k~~~R~~i~~~l~~lgi~v~k~~~ 298 (298)
T 2gfq_A 252 VMIKALNRFGEKVEAIYVDWKGSRGETRQLAKSLAQELGLEFIKDGS 298 (298)
T ss_dssp HHHHHHTCBSSCCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEEEC-
T ss_pred HHHHHHHhhcCCCCEEEEecCCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 45677777 5788887765444445789999999999999887653
No 382
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=21.19 E-value=73 Score=24.55 Aligned_cols=34 Identities=3% Similarity=0.042 Sum_probs=28.3
Q ss_pred CceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 49 GISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 49 ~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...-+||-|.|.-+ ++..+.+.|.++++|+++.+
T Consensus 136 ~~~DlVid~~Dn~~--~R~~in~~c~~~~~Pli~~g 169 (292)
T 3h8v_A 136 KPVDLVLSCVDNFE--ARMTINTACNELGQTWMESG 169 (292)
T ss_dssp BCCSEEEECCSSHH--HHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEECCcchh--hhhHHHHHHHHhCCCEEEee
Confidence 46889998988744 57889999999999998754
No 383
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=21.15 E-value=59 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=18.9
Q ss_pred hhHHHHHHhCCCCEEEeCCHHHHhHH
Q 033058 67 LHLPLLAEDKNVPYVFVPSKQALGRA 92 (128)
Q Consensus 67 ~~l~~lc~~~~IP~~~~~sk~eLG~a 92 (128)
.-+..+|+++++|+.++ +.++|...
T Consensus 58 ~gL~~~A~~lg~pl~~~-~~eeL~~v 82 (145)
T 2w6k_A 58 PGLRQLATLLERPVHFL-APAVLHDY 82 (145)
T ss_dssp HHHHHHHHHHTSCEEEE-CHHHHHTT
T ss_pred HHHHHHHHHhCCCcEEe-CHHHHhhc
Confidence 45789999999998775 55666543
No 384
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=21.13 E-value=1.5e+02 Score=18.21 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=25.6
Q ss_pred EEEecCCChhhHHhhHHHHHHhCC-CCEEEeCCHHHHhHHhCCCC
Q 033058 54 IVMAADTEPLEILLHLPLLAEDKN-VPYVFVPSKQALGRACGVTR 97 (128)
Q Consensus 54 VilA~D~~p~~~~~~l~~lc~~~~-IP~~~~~sk~eLG~a~G~~~ 97 (128)
|++..|- +. ....+..+.+..+ ..+..+.+-.+.=..+....
T Consensus 17 ilivdd~-~~-~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~ 59 (135)
T 3snk_A 17 VALFSSD-PN-FKRDVATRLDALAIYDVRVSETDDFLKGPPADTR 59 (135)
T ss_dssp EEEECSC-HH-HHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC
T ss_pred EEEEcCC-HH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC
Confidence 4444443 43 5677777777777 77777777666555554443
No 385
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=21.12 E-value=1.4e+02 Score=23.30 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHHHHHHH----c-CceeEEEEecC-------CChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLN----R-GISEFIVMAAD-------TEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~----~-~kakLVilA~D-------~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+...+++. + .+.++|++-.+ +-+.+..+.+.++|++++++++.
T Consensus 201 ~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 201 EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45566665 4 37888854322 11223467899999999998764
No 386
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.12 E-value=1.2e+02 Score=23.39 Aligned_cols=38 Identities=5% Similarity=-0.004 Sum_probs=31.1
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV 81 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~ 81 (128)
.++.+.+++.+++.||.-...+++ +.+. ++++.|+|+.
T Consensus 243 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~---iA~e~g~~v~ 280 (321)
T 1xvl_A 243 QTVIEEVKTNNVPTIFCESTVSDK-GQKQ---VAQATGARFG 280 (321)
T ss_dssp HHHHHHHHTTTCSEEEEETTSCSH-HHHH---HHTTTCCEEE
T ss_pred HHHHHHHHHcCCcEEEEeCCCChH-HHHH---HHHhcCCcee
Confidence 566788899999999999988886 5554 4899999985
No 387
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=21.12 E-value=58 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.6
Q ss_pred CCChhhHHhhHHHHHHhCCCCEEE
Q 033058 59 DTEPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 59 D~~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
|+++. +...+..+|++++||+-.
T Consensus 379 ~~~~~-~~~~l~~ia~~~~Ip~Q~ 401 (461)
T 2glj_A 379 DANPE-YIAELRRILSKESVNWQT 401 (461)
T ss_dssp CCCHH-HHHHHHHHHHHTCCCEEE
T ss_pred cCCHH-HHHHHHHHHHHcCCCeEE
Confidence 35665 889999999999999966
No 388
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.02 E-value=69 Score=23.17 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=28.2
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCE-EEeCC----HHHHhHHh
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPY-VFVPS----KQALGRAC 93 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~s----k~eLG~a~ 93 (128)
.||++++.+-. +.++....++++|||| +.+-| .+++-+..
T Consensus 15 ~IimGS~SD~~-v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~ 59 (170)
T 1xmp_A 15 GVIMGSTSDWE-TMKYACDILDELNIPYEKKVVSAHRTPDYMFEYA 59 (170)
T ss_dssp EEEESSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHH
T ss_pred EEEECcHHHHH-HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHH
Confidence 46666676665 8999999999999998 34443 35555543
No 389
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.99 E-value=1.2e+02 Score=21.43 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=18.3
Q ss_pred cCCChhhHHhhHHHHHHhCCCCEEEeCCHHHHhHHhCC
Q 033058 58 ADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV 95 (128)
Q Consensus 58 ~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eLG~a~G~ 95 (128)
.|.++.+..+.+..+|+.++++++. .+..++-..+|-
T Consensus 35 k~~~~~~~~~~i~~l~~~~~~~liv-nd~~~~A~~~ga 71 (210)
T 3ceu_A 35 PETPAMYSERLLTLIPEKYHRRIVT-HEHFYLKEEFNL 71 (210)
T ss_dssp SSCCHHHHHHHHHHSCGGGGGGEEE-SSCTTHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEE-eCCHHHHHHcCC
Confidence 3444444555566666666666543 233344444443
No 390
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.95 E-value=1.1e+02 Score=23.18 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYV 81 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~ 81 (128)
..++.+.+++.+++.||.-...+++ + +..++++.|+|++
T Consensus 221 l~~l~~~ik~~~v~~if~e~~~~~~-~---~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 221 ISSLIEKLKVIKPSALFVESSVDRR-P---METVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHHHHSCCSCEEEETTSCSH-H---HHHHHHHHCCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcH-H---HHHHHHHhCCcEE
Confidence 4567788889999999998888776 4 3566899999987
No 391
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=20.90 E-value=64 Score=23.88 Aligned_cols=44 Identities=7% Similarity=0.007 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++...+.++|++..=.+|. .-.+.+.++|+++|++++.
T Consensus 116 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 116 PGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVV 162 (384)
T ss_dssp HHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEE
Confidence 4677788877668888887532221 1147789999999998765
No 392
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=20.86 E-value=70 Score=23.24 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=27.4
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCE-EEeC----CHHHHhHH
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPY-VFVP----SKQALGRA 92 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~-~~~~----sk~eLG~a 92 (128)
.||.+++.+-. +.++....++++|||| +.+- +.+++-+.
T Consensus 16 ~IimGS~SD~~-v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~ 59 (174)
T 3kuu_A 16 AIVMGSKSDWA-TMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSF 59 (174)
T ss_dssp EEEESSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred EEEECcHHHHH-HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHH
Confidence 46666666665 8999999999999998 3443 33444444
No 393
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=20.85 E-value=1.7e+02 Score=22.46 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=28.0
Q ss_pred HHHHHHHHcC---ceeEEEEe--cC--C---ChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRG---ISEFIVMA--AD--T---EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~---kakLVilA--~D--~---~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++... +.++|++. .+ . -+.+..+.+.++|++++++++.
T Consensus 161 ~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~ 213 (456)
T 2ez2_A 161 KKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFY 213 (456)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 4556666543 35778775 22 1 1222478899999999999865
No 394
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=20.80 E-value=1.5e+02 Score=24.67 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEe
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
+++.+.|++-+--++++..-+.. ...+.+..++++.++|++..
T Consensus 234 ~~~~~~l~~A~rPvIl~G~g~~~-~a~~~l~~lae~~~~PV~~t 276 (604)
T 2x7j_A 234 SDVAEMLAEAEKGMIVCGELHSD-ADKENIIALSKALQYPILAD 276 (604)
T ss_dssp HHHHHHHHHCSSEEEEECCCCCH-HHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhhcCCeEEEECCCCcH-HHHHHHHHHHHhcCceEEEc
Confidence 45556666665555555555544 36788999999999999754
No 395
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=20.74 E-value=72 Score=23.73 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCC------CEEE-eCCHHHHhHHhCCCCceEEEEEecCCchH
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV------PYVF-VPSKQALGRACGVTRPVIACSVTSNEASQ 111 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~I------P~~~-~~sk~eLG~a~G~~~~~~~v~i~~~~~~~ 111 (128)
.+++.++++.| +++++- |. +...+...|+++++ |++- +.|..|+-++ .+.++..+-+.......
T Consensus 75 ~~~a~~ai~AG-A~fivs-----P~-~~~evi~~~~~~~v~~~~~~~~~PG~~TptE~~~A--~~~Gad~vK~FPa~~~g 145 (217)
T 3lab_A 75 ADDFQKAIDAG-AQFIVS-----PG-LTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIA--AQAGITQLKCFPASAIG 145 (217)
T ss_dssp HHHHHHHHHHT-CSEEEE-----SS-CCHHHHHHHHHHHHHCSCCCEEEEEECSHHHHHHH--HHTTCCEEEETTTTTTT
T ss_pred HHHHHHHHHcC-CCEEEe-----CC-CcHHHHHHHHHcCCCccCCCeEeCCCCCHHHHHHH--HHcCCCEEEECcccccc
Confidence 67888888888 777753 44 45566788999999 9864 6899999888 44444455565433211
Q ss_pred HHHHHHHHHH
Q 033058 112 LKTQIQQLKD 121 (128)
Q Consensus 112 ~~~li~~i~~ 121 (128)
=.+.++.++.
T Consensus 146 G~~~lkal~~ 155 (217)
T 3lab_A 146 GAKLLKAWSG 155 (217)
T ss_dssp HHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 1344555544
No 396
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=20.71 E-value=2.4e+02 Score=20.28 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=31.2
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhC-------CCCEE-EeCCHHHHhHHhCCC
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDK-------NVPYV-FVPSKQALGRACGVT 96 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~-------~IP~~-~~~sk~eLG~a~G~~ 96 (128)
.+..+.++...+.+|.|+.|.... . ..+++.+ ++++- ..+...++.++.|..
T Consensus 101 ~~l~~~~~~~gv~vv~Is~D~~~~-~----~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~ 160 (240)
T 3qpm_A 101 SDRVHEFRAINTEVVACSVDSQFT-H----LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVY 160 (240)
T ss_dssp HHHHHHHHTTTEEEEEEESSCHHH-H----HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEECCCHHH-H----HHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCc
Confidence 344455555568888888886332 3 3344433 55553 334457899999985
No 397
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=20.69 E-value=1e+02 Score=23.25 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHcCceeEEEEecC-CC----hh-h----HHhhHHHHHHhCCCCEEEeC
Q 033058 40 NEATKTLNRGISEFIVMAAD-TE----PL-E----ILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D-~~----p~-~----~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++.+.+++.++-+||+|.| .- |. + ..+.+..+.+. +|++.+.
T Consensus 51 ~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~ 103 (336)
T 2q8u_A 51 DKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLP 103 (336)
T ss_dssp HHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECC
T ss_pred HHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEC
Confidence 44555566677899999999 42 21 1 22334444433 8977664
No 398
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=20.66 E-value=1.6e+02 Score=21.53 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHHcC-----ceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 35 LKKGANEATKTLNRG-----ISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 35 lv~G~~~v~kai~~~-----kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
+++|.-..+++|-.. .+.++.+-+|-+ . ....+|+++|||+..+.
T Consensus 18 l~SG~gsnl~all~~~~~~~~~eI~~Vis~~~-a----~~~~~A~~~gIp~~~~~ 67 (215)
T 3da8_A 18 LASGTGSLLRSLLDAAVGDYPARVVAVGVDRE-C----RAAEIAAEASVPVFTVR 67 (215)
T ss_dssp EESSCCHHHHHHHHHSSTTCSEEEEEEEESSC-C----HHHHHHHHTTCCEEECC
T ss_pred EEeCChHHHHHHHHHHhccCCCeEEEEEeCCc-h----HHHHHHHHcCCCEEEeC
Confidence 456776666665321 235565655543 2 23678999999998874
No 399
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=20.62 E-value=1.5e+02 Score=25.21 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHcCceeEEEEecC-----------CChhhHHhhHHHHHHhCCCCEE
Q 033058 36 KKGANEATKTLNRGISEFIVMAAD-----------TEPLEILLHLPLLAEDKNVPYV 81 (128)
Q Consensus 36 v~G~~~v~kai~~~kakLVilA~D-----------~~p~~~~~~l~~lc~~~~IP~~ 81 (128)
--|+..+.+.+++..+.|.|-+-+ ++|..+...+...|.+++|++.
T Consensus 320 rdGY~pIa~mf~rh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~va 376 (535)
T 2xfr_A 320 RDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVA 376 (535)
T ss_dssp BCTTHHHHHHHHTTTCEEEECCTTCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHcCCeEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCcee
Confidence 478999999999999999998755 5677789999999999999985
No 400
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.42 E-value=72 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=24.9
Q ss_pred EEEEecCCChhhHHhhHHHHHHhCCCCEE-EeC
Q 033058 53 FIVMAADTEPLEILLHLPLLAEDKNVPYV-FVP 84 (128)
Q Consensus 53 LVilA~D~~p~~~~~~l~~lc~~~~IP~~-~~~ 84 (128)
-||+.+|.+-. +.++....+++++|||- .+-
T Consensus 26 ~IimGS~SD~~-v~~~a~~~L~~~gI~~e~~V~ 57 (181)
T 4b4k_A 26 GVIMGSTSDWE-TMKYACDILDELNIPYEKKVV 57 (181)
T ss_dssp EEEESSGGGHH-HHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCHhHHH-HHHHHHHHHHHcCCCeeEEEE
Confidence 36788888776 89999999999999983 443
No 401
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=20.41 E-value=49 Score=24.90 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+.+.++|++..-.+|. .-.+.+.++|++++++++.
T Consensus 127 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 127 PDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYT 173 (411)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEE
Confidence 3566777766567888886622111 1147889999999998764
No 402
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=20.39 E-value=1.2e+02 Score=20.69 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.5
Q ss_pred CCCCEEEeCCHHHH
Q 033058 76 KNVPYVFVPSKQAL 89 (128)
Q Consensus 76 ~~IP~~~~~sk~eL 89 (128)
.++|++.+.+|.+|
T Consensus 140 ~~~piilV~NK~Dl 153 (217)
T 2f7s_A 140 ENPDIVLIGNKADL 153 (217)
T ss_dssp TCCEEEEEEECTTC
T ss_pred CCCCEEEEEECCcc
Confidence 57888888777665
No 403
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.38 E-value=1.2e+02 Score=22.32 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
.+.+.+.+.++++..||-.. .+. ....+...+++++||++...
T Consensus 70 ~~~~~~l~~~~~v~~iiG~~-~s~--~~~~~~~~~~~~~iP~i~~~ 112 (366)
T 3td9_A 70 ANAAARAIDKEKVLAIIGEV-ASA--HSLAIAPIAEENKVPMVTPA 112 (366)
T ss_dssp HHHHHHHHHTSCCSEEEECS-SHH--HHHHHHHHHHHTTCCEEESS
T ss_pred HHHHHHHhccCCeEEEEccC-Cch--hHHHHHHHHHhCCCeEEecC
Confidence 34455556666677776443 223 34566778899999998764
No 404
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=20.37 E-value=83 Score=26.11 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=30.8
Q ss_pred HHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeCCHHHH
Q 033058 40 NEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQAL 89 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~sk~eL 89 (128)
..+.++++.-.+-++++............+...+..+++|++.+.+|.++
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 45677777655555555443322213455667888999999888766443
No 405
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=20.28 E-value=1.2e+02 Score=23.65 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCceeEEEEecCCChh-----hHHhhHHHHH---HhCCCCEEEeCCH
Q 033058 39 ANEATKTLNRGISEFIVMAADTEPL-----EILLHLPLLA---EDKNVPYVFVPSK 86 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~D~~p~-----~~~~~l~~lc---~~~~IP~~~~~sk 86 (128)
.+.+.+.++..++-+||+|.|.-.. .....+.... ...++|++.+...
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GN 104 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGN 104 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 3455666677789999999997321 0112222222 2348998776533
No 406
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.27 E-value=1.8e+02 Score=20.89 Aligned_cols=63 Identities=6% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHH-HHHHHHHcCC-c-c------ccHHHHHHHHHcCceeEEEE-ecCCChhhHHhhHHHHHHhCCCCEEEeCC
Q 033058 18 LTITILD-LVQQAANYKQ-L-K------KGANEATKTLNRGISEFIVM-AADTEPLEILLHLPLLAEDKNVPYVFVPS 85 (128)
Q Consensus 18 ~~~~i~~-lL~~a~~ag~-l-v------~G~~~v~kai~~~kakLVil-A~D~~p~~~~~~l~~lc~~~~IP~~~~~s 85 (128)
....+++ +-..|.+.|. + + ....+..+.+..+++.-+|+ ..+.+. .....+.+.+||++.++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-----FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-----HHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHhCCCCEEEECC
Confidence 3333444 4455566664 1 1 12346677777777654444 444433 224456778999998875
No 407
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=20.26 E-value=1.7e+02 Score=21.83 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=26.9
Q ss_pred HHHHHHHHcCceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNRGISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
++..+++. .+.++|++..=.. |.+....+.++|+++++.++.
T Consensus 154 ~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (386)
T 1u08_A 154 QEFAALLS-ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVIS 201 (386)
T ss_dssp HHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHhhc-ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 34455553 5678888853111 222468889999999998764
No 408
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=20.26 E-value=1.9e+02 Score=18.86 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=41.0
Q ss_pred ceeEEEEecCCChh--hHHhhHHHHHHhCCCCEEEeCCHHHHh-------------HHhCCCCceEEEEEecCCchHHHH
Q 033058 50 ISEFIVMAADTEPL--EILLHLPLLAEDKNVPYVFVPSKQALG-------------RACGVTRPVIACSVTSNEASQLKT 114 (128)
Q Consensus 50 kakLVilA~D~~p~--~~~~~l~~lc~~~~IP~~~~~sk~eLG-------------~a~G~~~~~~~v~i~~~~~~~~~~ 114 (128)
.+.+|++--|++.. .....+..+....++|++.+.+|.+|- ..++.......+-+--....++.+
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 35566655554421 133455667777899999998887652 112221212233333334467777
Q ss_pred HHHHHHHHHh
Q 033058 115 QIQQLKDAIE 124 (128)
Q Consensus 115 li~~i~~~~~ 124 (128)
+.+.+...+.
T Consensus 184 l~~~l~~~l~ 193 (195)
T 3pqc_A 184 LLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 7777666553
No 409
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=20.25 E-value=1.4e+02 Score=23.26 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=28.6
Q ss_pred HHHHHHHHc---CceeEEEEecCCC-------hhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLNR---GISEFIVMAADTE-------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~~---~kakLVilA~D~~-------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.+++.+ ++..+||+-.-.+ +.+..+.+.++|++|++.++.
T Consensus 208 ~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 260 (460)
T 3gju_A 208 DKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVA 260 (460)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455566653 4566777654221 223478899999999998875
No 410
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=20.24 E-value=1.2e+02 Score=23.65 Aligned_cols=43 Identities=12% Similarity=0.289 Sum_probs=31.3
Q ss_pred cHHHHHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC
Q 033058 38 GANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~ 84 (128)
......+.+++-+..+|++-.|.... .. ...|...+||++.+.
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~-~a---alaA~~~~IPv~h~e 124 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSC-LS---AIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGG-GG---HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHH-HH---HHHHHHhCCCEEEEe
Confidence 34455666777789999999998665 33 456788999987764
No 411
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=20.22 E-value=2e+02 Score=19.13 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCEEEeCCHHHHhH
Q 033058 69 LPLLAEDKNVPYVFVPSKQALGR 91 (128)
Q Consensus 69 l~~lc~~~~IP~~~~~sk~eLG~ 91 (128)
+...+...++|++.+++|.+|-.
T Consensus 124 i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 124 LDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHTTSCCCEEEEEECGGGGG
T ss_pred HHHhhCCCCCcEEEEEECccccc
Confidence 33444457999999998887754
No 412
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=20.20 E-value=95 Score=23.52 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCceeEEEEec--C----CChhhHHhhHHHHHHhCCCCEEEe
Q 033058 39 ANEATKTLNRGISEFIVMAA--D----TEPLEILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 39 ~~~v~kai~~~kakLVilA~--D----~~p~~~~~~l~~lc~~~~IP~~~~ 83 (128)
..++.++++..+.++|++.. + ..|.+..+.+..+|++++++++.=
T Consensus 124 ~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 124 IETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp HHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 35677778654566666542 1 112224688899999999987653
No 413
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=20.16 E-value=2.4e+02 Score=20.05 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHh------CCCCE-EEeCCHHHHhHHhCC
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAED------KNVPY-VFVPSKQALGRACGV 95 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~------~~IP~-~~~~sk~eLG~a~G~ 95 (128)
..+..++..+++|-|+.|.... ....+...-+. +++++ +..+...++.++.|.
T Consensus 57 l~~~f~~~~v~vi~IS~D~~~~-~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv 116 (224)
T 1prx_A 57 LAPEFAKRNVKLIALSIDSVED-HLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGM 116 (224)
T ss_dssp HHHHHHTTTEEEEEEESSCHHH-HHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTS
T ss_pred HHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCC
Confidence 3344455668999999886432 32222221111 56665 334555788888887
No 414
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.15 E-value=1.4e+02 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=24.8
Q ss_pred eeEEEEecCCC-------hh--hHHhhHHHHHHhCCCCEEEeC
Q 033058 51 SEFIVMAADTE-------PL--EILLHLPLLAEDKNVPYVFVP 84 (128)
Q Consensus 51 akLVilA~D~~-------p~--~~~~~l~~lc~~~~IP~~~~~ 84 (128)
...+|+|.|.. +. +-..++..+|.++++|++++-
T Consensus 121 ~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~ 163 (285)
T 2f9i_B 121 MKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFS 163 (285)
T ss_dssp EEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 46788899953 11 235778899999999998753
No 415
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.15 E-value=70 Score=25.84 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=28.6
Q ss_pred HcCceeEEEEecCCChhhHHhhHHHHHHhC--------CCCEEEeCC
Q 033058 47 NRGISEFIVMAADTEPLEILLHLPLLAEDK--------NVPYVFVPS 85 (128)
Q Consensus 47 ~~~kakLVilA~D~~p~~~~~~l~~lc~~~--------~IP~~~~~s 85 (128)
++-+.++++|..=|.+.-+-+.+...|++. ++|++.+.+
T Consensus 93 ~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pvi~v~t 139 (458)
T 1mio_B 93 SLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNT 139 (458)
T ss_dssp HHTCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECC
T ss_pred HhcCCCEEEEECCcHHHHHhcCHHHHHHHHHHhcCCCCCCeEEEEEC
Confidence 446788888888887764667777777653 899988764
No 416
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.09 E-value=1.9e+02 Score=21.15 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHc----CceeEEEEecCCChh---hHHhhHHHHHHhCCCCEEE
Q 033058 39 ANEATKTLNR----GISEFIVMAADTEPL---EILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 39 ~~~v~kai~~----~kakLVilA~D~~p~---~~~~~l~~lc~~~~IP~~~ 82 (128)
.+++.+++.+ .+.++|++..=.+|. .-.+.+..+|++++++++.
T Consensus 132 ~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 132 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLV 182 (371)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEE
Confidence 3455666653 467777776542221 0137889999999998764
No 417
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=20.08 E-value=1.7e+02 Score=22.01 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=27.5
Q ss_pred HHHHHHHH----c-CceeEEEEecCC-------ChhhHHhhHHHHHHhCCCCEEE
Q 033058 40 NEATKTLN----R-GISEFIVMAADT-------EPLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 40 ~~v~kai~----~-~kakLVilA~D~-------~p~~~~~~l~~lc~~~~IP~~~ 82 (128)
+++.++++ . .+.++|++-... -|.+..+.+..+|++++++++.
T Consensus 159 ~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 159 DLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45666676 4 367887543321 1223456889999999998764
No 418
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=20.06 E-value=2.4e+02 Score=19.96 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=33.1
Q ss_pred HHHHHHcCceeEEEEecCCChhhHHhhHHHHHHhCCCCEEEeC--C-------HHHHhHHhCCCCce
Q 033058 42 ATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVP--S-------KQALGRACGVTRPV 99 (128)
Q Consensus 42 v~kai~~~kakLVilA~D~~p~~~~~~l~~lc~~~~IP~~~~~--s-------k~eLG~a~G~~~~~ 99 (128)
-.+.|..=+.-|||......+ .+....++.+||++.+. + -..||+++|++.++
T Consensus 52 n~E~i~~l~PDLIi~~~~~~~-----~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~~~A 113 (260)
T 2q8p_A 52 NVEAVKKLKPTHVLSVSTIKD-----EMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQA 113 (260)
T ss_dssp CHHHHHHTCCSEEEEEGGGHH-----HHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHhcCCCEEEecCccCH-----HHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCChHHH
Confidence 356666777888887543222 23334455679987653 2 24689999987553
No 419
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=20.02 E-value=83 Score=25.78 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=31.2
Q ss_pred cHHHHHHHHHcCceeEEEEecCCChhh-HHhhHHHHHHhCCCCEEE
Q 033058 38 GANEATKTLNRGISEFIVMAADTEPLE-ILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 38 G~~~v~kai~~~kakLVilA~D~~p~~-~~~~l~~lc~~~~IP~~~ 82 (128)
=.+++.++++..+.++|++..-..|.. -.+.+..+|+++|++++.
T Consensus 191 D~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~liv 236 (490)
T 2a7v_A 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLA 236 (490)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEE
Confidence 356777788655678888765444431 147889999999998754
No 420
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=20.02 E-value=1.9e+02 Score=23.19 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHcCceeEEEEecCCC--h-h--hHHhhHHHHHHhCCCCEEEe
Q 033058 36 KKGANEATKTLNRGISEFIVMAADTE--P-L--EILLHLPLLAEDKNVPYVFV 83 (128)
Q Consensus 36 v~G~~~v~kai~~~kakLVilA~D~~--p-~--~~~~~l~~lc~~~~IP~~~~ 83 (128)
..|...+...+++|.-+++++..... . . +-.+-+.+.|+++|+|+...
T Consensus 142 ~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~ 194 (371)
T 3qi7_A 142 ERGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQV 194 (371)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceee
Confidence 35666777788889999999987542 1 1 01345788999999998654
No 421
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=20.00 E-value=73 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=22.9
Q ss_pred CceeEEEEecCCC------hhhHHhhHHHHHHhCCCCEEE
Q 033058 49 GISEFIVMAADTE------PLEILLHLPLLAEDKNVPYVF 82 (128)
Q Consensus 49 ~kakLVilA~D~~------p~~~~~~l~~lc~~~~IP~~~ 82 (128)
.+.++|++.+=.. +.+..+.+..+|++++++++.
T Consensus 171 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 171 PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4678888842111 223468889999999998764
Done!