Query 033059
Match_columns 128
No_of_seqs 278 out of 1331
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_m 60S ribosomal protein L 100.0 1.1E-45 3.8E-50 242.9 2.5 128 1-128 1-128 (128)
2 4fbj_B NEDD8; effector-HOST ta 99.9 5.5E-25 1.9E-29 135.4 9.7 81 1-81 1-81 (88)
3 3phx_B Ubiquitin-like protein 99.9 4.2E-24 1.4E-28 128.7 10.4 75 1-75 5-79 (79)
4 1ndd_A NEDD8, protein (ubiquit 99.9 8.6E-24 2.9E-28 126.0 10.5 76 1-76 1-76 (76)
5 3n3k_B Ubiquitin; hydrolase, p 99.9 5.7E-24 2E-28 129.5 9.0 79 1-79 4-82 (85)
6 3a9j_A Ubiquitin; protein comp 99.9 1.7E-23 5.8E-28 124.7 10.8 76 1-76 1-76 (76)
7 3mtn_B UBA80, ubcep1, ubiquiti 99.9 1.1E-23 3.6E-28 128.3 9.7 80 1-80 4-83 (85)
8 1sif_A Ubiquitin; hydrophobic 99.9 1.1E-23 3.7E-28 129.6 9.7 78 1-78 10-87 (88)
9 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 1.4E-23 4.6E-28 128.6 10.1 79 1-79 8-86 (87)
10 4hcn_B Polyubiquitin, ubiquiti 99.9 1.3E-23 4.4E-28 131.7 9.9 76 1-76 23-98 (98)
11 3dbh_I NEDD8; cell cycle, acti 99.9 8.5E-24 2.9E-28 129.6 8.7 76 1-76 13-88 (88)
12 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 3.4E-23 1.2E-27 129.0 10.7 77 1-77 2-78 (96)
13 2uyz_B Small ubiquitin-related 99.9 2.7E-23 9.2E-28 125.2 8.7 76 1-76 4-79 (79)
14 3plu_A Ubiquitin-like modifier 99.9 8.7E-23 3E-27 125.7 9.8 70 1-70 22-91 (93)
15 2hj8_A Interferon-induced 17 k 99.9 4.2E-23 1.5E-27 126.9 8.3 77 1-77 5-81 (88)
16 1wy8_A NP95-like ring finger p 99.9 2E-22 7E-27 123.9 10.6 77 1-77 8-86 (89)
17 3vdz_A Ubiquitin-40S ribosomal 99.9 1.4E-22 4.7E-27 129.7 10.1 76 1-76 36-111 (111)
18 2kan_A Uncharacterized protein 99.9 1.3E-22 4.3E-27 126.3 9.6 76 1-77 16-92 (94)
19 3v6c_B Ubiquitin; structural g 99.9 1.3E-22 4.4E-27 125.4 9.4 74 1-74 18-91 (91)
20 1wyw_B Ubiquitin-like protein 99.9 1.1E-22 3.9E-27 127.1 8.9 76 1-76 22-97 (97)
21 4dwf_A HLA-B-associated transc 99.9 2.4E-22 8E-27 123.9 10.1 76 1-77 6-81 (90)
22 1yx5_B Ubiquitin; proteasome, 99.9 3.2E-22 1.1E-26 125.2 10.7 77 1-77 1-77 (98)
23 2l7r_A Ubiquitin-like protein 99.9 1.4E-22 4.7E-27 125.9 8.9 74 1-76 20-93 (93)
24 2kk8_A Uncharacterized protein 99.9 1.9E-22 6.5E-27 123.1 8.8 72 1-72 11-83 (84)
25 2faz_A Ubiquitin-like containi 99.9 8E-22 2.7E-26 118.3 9.5 73 1-73 3-77 (78)
26 2ojr_A Ubiquitin; lanthide-bin 99.9 1.1E-21 3.7E-26 125.5 10.6 76 1-76 36-111 (111)
27 1wgd_A Homocysteine-responsive 99.9 6.2E-22 2.1E-26 122.8 9.1 77 1-77 8-90 (93)
28 1uel_A HHR23B, UV excision rep 99.9 1.6E-21 5.4E-26 121.5 10.9 76 1-76 1-79 (95)
29 3l0w_B Monoubiquitinated proli 99.9 1.3E-21 4.4E-26 133.6 11.3 77 1-77 1-77 (169)
30 1j8c_A Ubiquitin-like protein 99.9 1.1E-21 3.7E-26 128.0 10.1 87 1-88 33-119 (125)
31 1we6_A Splicing factor, putati 99.9 4.5E-22 1.5E-26 127.2 8.1 79 1-79 28-110 (111)
32 4eew_A Large proline-rich prot 99.9 1.4E-21 4.9E-26 119.9 9.8 71 1-72 18-88 (88)
33 2dzi_A Ubiquitin-like protein 99.9 1.2E-21 4.1E-26 118.2 8.9 74 1-74 8-81 (81)
34 3b1l_X E3 ubiquitin-protein li 99.8 1.3E-23 4.3E-28 125.6 0.0 75 1-75 1-75 (76)
35 3u5c_f 40S ribosomal protein S 99.9 6.6E-24 2.3E-28 142.5 -1.4 100 1-100 1-106 (152)
36 2lxa_A Ubiquitin-like protein 99.9 6.2E-22 2.1E-26 121.4 7.5 73 1-73 2-78 (87)
37 1uh6_A Ubiquitin-like 5; beta- 99.9 7.6E-22 2.6E-26 123.5 8.0 70 1-70 29-98 (100)
38 3rt3_B Ubiquitin-like protein 99.9 1.7E-21 5.8E-26 131.4 10.3 77 1-77 82-158 (159)
39 3m62_B UV excision repair prot 99.9 1.3E-21 4.3E-26 124.3 7.9 76 1-76 2-77 (106)
40 2wyq_A HHR23A, UV excision rep 99.9 4.7E-21 1.6E-25 116.6 10.2 73 1-73 6-81 (85)
41 2kdi_A Ubiquitin, vacuolar pro 99.9 4.5E-21 1.5E-25 123.2 10.5 77 1-77 10-86 (114)
42 3q3f_A Ribonuclease/ubiquitin 99.9 1.7E-21 5.9E-26 134.8 8.8 77 1-77 106-182 (189)
43 2fnj_B Transcription elongatio 99.9 2.8E-21 9.5E-26 124.1 9.1 78 1-79 1-86 (118)
44 1wx8_A Riken cDNA 4931431F19; 99.9 1.3E-21 4.5E-26 121.9 7.2 76 1-77 18-93 (96)
45 1yqb_A Ubiquilin 3; structural 99.9 3.7E-21 1.3E-25 120.9 8.9 75 1-76 23-97 (100)
46 1wju_A NEDD8 ultimate buster-1 99.8 5.5E-21 1.9E-25 119.6 9.3 75 2-77 17-95 (100)
47 4a20_A Ubiquitin-like protein 99.8 4.3E-21 1.5E-25 120.1 8.7 73 1-73 20-96 (98)
48 1v2y_A 3300001G02RIK protein; 99.8 1.4E-21 4.8E-26 123.5 6.5 77 1-77 8-100 (105)
49 2bwf_A Ubiquitin-like protein 99.8 9.5E-21 3.3E-25 113.2 9.8 71 1-72 5-75 (77)
50 1wx7_A Ubiquilin 3; ubiquitin- 99.8 7.3E-21 2.5E-25 120.7 9.7 78 1-79 18-95 (106)
51 1ttn_A DC-UBP, dendritic cell- 99.8 5.2E-21 1.8E-25 121.4 8.9 77 1-77 24-100 (106)
52 4ajy_B Transcription elongatio 99.8 1.3E-20 4.4E-25 120.7 9.4 78 1-79 1-86 (118)
53 1v5o_A 1700011N24RIK protein; 99.8 9.8E-21 3.3E-25 119.3 8.2 77 1-77 8-89 (102)
54 2klc_A Ubiquilin-1; ubiquitin- 99.8 2.5E-20 8.7E-25 117.3 10.0 74 1-75 26-99 (101)
55 1we7_A SF3A1 protein; structur 99.8 2E-20 6.7E-25 120.3 9.6 78 1-78 26-113 (115)
56 1se9_A Ubiquitin family; ubiqu 99.8 2.2E-20 7.7E-25 121.1 9.8 77 1-77 17-107 (126)
57 3b08_A Polyubiquitin-C, ubiqui 99.8 5.7E-20 1.9E-24 122.6 10.4 76 1-76 77-152 (152)
58 3u30_A Ubiquitin, linear DI-ub 99.8 5.4E-20 1.9E-24 125.6 10.2 76 1-76 21-96 (172)
59 3u30_A Ubiquitin, linear DI-ub 99.8 2.5E-20 8.5E-25 127.3 8.3 76 1-76 97-172 (172)
60 2gow_A HCG-1 protein, ubiquiti 99.8 2.5E-20 8.6E-25 121.2 6.1 77 1-77 18-104 (125)
61 1wgh_A Ubiquitin-like 3, HCG-1 99.8 2E-19 7E-24 115.5 9.9 76 1-76 17-102 (116)
62 3b08_A Polyubiquitin-C, ubiqui 99.8 2.6E-19 9E-24 119.3 10.8 76 1-76 1-76 (152)
63 3rt3_B Ubiquitin-like protein 99.8 2.2E-19 7.5E-24 121.0 10.3 73 1-73 3-77 (159)
64 3m63_B Ubiquitin domain-contai 99.8 3.1E-20 1.1E-24 116.9 5.0 71 1-72 29-99 (101)
65 4dbg_A Ranbp-type and C3HC4-ty 99.8 4.1E-19 1.4E-23 111.9 9.7 72 1-72 25-99 (105)
66 2kdb_A Homocysteine-responsive 99.8 1.6E-19 5.5E-24 113.1 7.0 70 1-70 24-99 (99)
67 1v5t_A 8430435I17RIK protein; 99.8 3.2E-19 1.1E-23 110.0 7.7 71 1-72 8-82 (90)
68 2kd0_A LRR repeats and ubiquit 99.8 6.1E-19 2.1E-23 107.6 8.9 70 3-72 14-83 (85)
69 1wia_A Hypothetical ubiquitin- 99.8 6.5E-19 2.2E-23 109.5 8.5 73 1-76 8-81 (95)
70 1x1m_A Ubiquitin-like protein 99.8 7E-19 2.4E-23 111.7 8.5 74 1-74 13-101 (107)
71 2daf_A FLJ35834 protein; hypot 99.8 1E-18 3.4E-23 111.4 9.1 75 2-76 17-92 (118)
72 1wgg_A Ubiquitin carboxyl-term 99.8 4.9E-19 1.7E-23 110.4 6.9 71 1-73 8-79 (96)
73 1wxv_A BAG-family molecular ch 99.8 1.7E-18 5.9E-23 106.9 8.7 72 1-73 8-85 (92)
74 2xzm_9 RPS31E; ribosome, trans 99.8 4.7E-20 1.6E-24 127.1 0.1 112 1-118 1-137 (189)
75 2io1_B Small ubiquitin-related 99.7 1E-17 3.4E-22 104.0 9.2 80 1-80 8-87 (94)
76 1v86_A DNA segment, CHR 7, way 99.7 1.2E-18 4.2E-23 108.4 5.1 71 1-73 18-88 (95)
77 3ai5_A Yeast enhanced green fl 99.7 6E-18 2.1E-22 124.5 9.4 74 1-74 234-307 (307)
78 2dzj_A Synaptic glycoprotein S 99.7 3.1E-18 1.1E-22 105.2 5.8 69 1-69 11-85 (88)
79 2kjr_A CG11242; UBL, ubiquitin 99.7 1.4E-17 4.7E-22 103.6 8.5 70 1-70 16-93 (95)
80 2dzm_A FAS-associated factor 1 99.7 1.1E-17 3.8E-22 104.8 6.7 74 1-75 9-84 (100)
81 2io0_B Small ubiquitin-related 99.7 8.6E-17 3E-21 99.2 10.3 80 1-80 6-85 (91)
82 4b6w_A Tubulin-specific chaper 99.7 1.7E-17 5.7E-22 101.4 6.8 71 2-72 4-83 (86)
83 1oqy_A HHR23A, UV excision rep 99.7 1.9E-17 6.4E-22 124.7 7.3 77 1-77 8-88 (368)
84 2kj6_A Tubulin folding cofacto 99.7 5.5E-17 1.9E-21 101.2 7.6 70 2-71 16-94 (97)
85 2d07_B Ubiquitin-like protein 99.7 4E-16 1.4E-20 96.6 9.5 76 1-76 18-93 (93)
86 1v6e_A Cytoskeleton-associated 99.7 1.7E-16 5.9E-21 98.6 7.3 71 1-71 8-86 (95)
87 1wf9_A NPL4 family protein; be 99.7 6.1E-17 2.1E-21 102.7 5.3 71 1-72 8-94 (107)
88 1wz0_A Ubiquitin-like protein 99.6 5.3E-16 1.8E-20 97.8 7.9 78 1-78 25-102 (104)
89 1t0y_A Tubulin folding cofacto 99.6 7.3E-16 2.5E-20 99.8 8.8 72 1-72 7-86 (122)
90 2ayj_A 50S ribosomal protein L 99.6 1.8E-17 6.3E-22 91.3 -0.2 47 78-127 4-50 (56)
91 2kzr_A Ubiquitin thioesterase 99.6 4.6E-16 1.6E-20 95.0 6.0 70 1-71 1-76 (86)
92 2eke_C Ubiquitin-like protein 99.6 1.9E-15 6.6E-20 95.4 8.8 75 1-76 32-106 (106)
93 1wm3_A Ubiquitin-like protein 99.6 3.3E-15 1.1E-19 88.3 9.0 70 1-70 2-71 (72)
94 2k8h_A Small ubiquitin protein 99.6 1.2E-15 4E-20 97.0 6.9 76 1-76 27-102 (110)
95 3shq_A UBLCP1; phosphatase, hy 99.6 1.8E-15 6E-20 112.3 6.7 72 1-73 6-80 (320)
96 3a4r_A Nfatc2-interacting prot 99.6 2.1E-14 7E-19 86.3 9.5 70 1-70 8-78 (79)
97 1wjn_A Tubulin-folding protein 99.5 1.1E-13 3.7E-18 86.1 8.4 71 2-72 11-92 (97)
98 3kyd_D Small ubiquitin-related 99.4 1.6E-12 5.6E-17 82.9 10.0 75 1-75 41-115 (115)
99 3pge_A SUMO-modified prolifera 99.3 9E-12 3.1E-16 86.5 9.5 76 1-77 30-105 (200)
100 3tix_A Ubiquitin-like protein 99.3 4.1E-12 1.4E-16 87.1 7.0 76 1-77 58-133 (207)
101 3goe_A DNA repair protein RAD6 99.2 1.2E-10 4.1E-15 68.6 9.4 70 2-71 11-81 (82)
102 3v7o_A Minor nucleoprotein VP3 99.2 1.7E-12 5.7E-17 90.2 0.6 85 1-86 22-106 (227)
103 2pjh_A Protein NPL4, nuclear p 99.1 3.8E-11 1.3E-15 72.1 3.0 69 1-70 5-78 (80)
104 2jxx_A Nfatc2-interacting prot 99.0 2.1E-09 7.1E-14 66.6 9.1 70 1-70 26-96 (97)
105 3j21_g 50S ribosomal protein L 98.9 5.2E-10 1.8E-14 61.0 1.4 39 86-127 7-45 (51)
106 3uf8_A Ubiquitin-like protein 98.9 1.1E-08 3.9E-13 71.5 8.3 75 2-77 23-97 (209)
107 3ix6_A TS, tsase, thymidylate 98.8 5.2E-10 1.8E-14 83.7 0.0 76 1-77 22-97 (360)
108 2l76_A Nfatc2-interacting prot 98.8 5.6E-08 1.9E-12 59.5 8.7 70 1-71 22-91 (95)
109 4efo_A Serine/threonine-protei 98.6 2.4E-07 8.1E-12 56.8 8.3 68 3-70 15-86 (94)
110 4da1_A Protein phosphatase 1K, 98.6 4.4E-09 1.5E-13 79.7 0.0 75 2-77 32-106 (389)
111 2al3_A TUG long isoform; TUG U 98.6 2.9E-07 9.8E-12 55.8 7.8 73 1-73 10-82 (90)
112 2bps_A YUKD protein; ubiquitin 98.5 3.7E-07 1.3E-11 54.5 6.7 68 2-69 6-80 (81)
113 2kc2_A Talin-1, F1; FERM, adhe 98.4 7.8E-07 2.7E-11 57.5 6.5 71 2-72 13-122 (128)
114 3qx1_A FAS-associated factor 1 98.3 7.9E-06 2.7E-10 48.9 8.9 68 2-70 9-81 (84)
115 2dzk_A UBX domain-containing p 98.1 4.1E-05 1.4E-09 48.1 8.9 70 2-71 15-89 (109)
116 1wj4_A KIAA0794 protein; UBX d 97.9 4.5E-05 1.6E-09 49.0 7.6 69 2-71 45-118 (124)
117 1ryj_A Unknown; beta/alpha pro 97.7 0.00081 2.8E-08 38.7 9.2 66 1-76 5-70 (70)
118 2cr5_A Reproduction 8; UBX dom 97.6 0.00034 1.2E-08 43.8 7.8 69 2-71 25-97 (109)
119 1s3s_G P47 protein; AAA ATPase 97.5 0.00041 1.4E-08 44.7 7.4 66 2-67 54-123 (127)
120 2l32_A Small archaeal modifier 97.5 0.00022 7.7E-09 41.6 5.5 65 1-76 1-65 (74)
121 2daj_A KIAA0977 protein, COBL- 97.3 0.00043 1.5E-08 41.2 5.0 62 2-63 12-76 (91)
122 4a3p_A Ubiquitin carboxyl-term 97.2 0.0015 5E-08 45.7 7.7 65 13-77 142-213 (217)
123 3jyu_A Ubiquitin carboxyl-term 97.2 0.004 1.4E-07 43.9 9.4 65 13-77 154-225 (231)
124 4e71_A Plexin-B2, MM1; transme 97.1 0.0059 2E-07 38.2 8.9 63 10-72 23-110 (111)
125 1tyg_B YJBS; alpha beta barrel 97.1 0.0022 7.4E-08 38.6 6.6 61 9-76 26-87 (87)
126 3rpf_C Molybdopterin convertin 97.1 0.003 1E-07 36.5 7.0 71 1-76 1-74 (74)
127 1vjk_A Molybdopterin convertin 97.0 0.0079 2.7E-07 36.6 8.5 71 1-76 10-98 (98)
128 2k5p_A THis protein, thiamine- 96.9 0.0017 5.8E-08 38.2 4.5 67 1-77 1-70 (78)
129 2kl0_A Putative thiamin biosyn 96.9 0.0019 6.6E-08 37.5 4.7 66 1-77 1-66 (73)
130 1f0z_A THis protein; ubiquitin 96.8 0.0042 1.4E-07 35.1 5.7 66 1-76 1-66 (66)
131 3h6n_A Plexin-D1; structural g 96.7 0.022 7.4E-07 36.5 9.0 65 9-73 15-105 (127)
132 3ivf_A Talin-1; FERM domain, c 96.7 0.016 5.4E-07 43.2 9.6 75 2-77 5-96 (371)
133 2r2o_A Plexin-B1; effector dom 96.6 0.014 4.8E-07 37.8 7.9 63 11-73 41-129 (138)
134 1oey_A P67-PHOX, neutrophil cy 96.5 0.0077 2.6E-07 35.8 5.6 46 1-48 6-51 (83)
135 3dwg_C 9.5 kDa culture filtrat 96.4 0.034 1.2E-06 33.3 8.0 74 1-76 1-93 (93)
136 4e74_A Plexin-A4; RBD, structu 96.3 0.023 7.9E-07 35.9 7.1 63 11-73 27-115 (117)
137 2juo_A GA-binding protein alph 96.3 0.032 1.1E-06 33.1 7.1 60 15-74 7-66 (89)
138 3po0_A Small archaeal modifier 96.2 0.04 1.4E-06 32.6 7.7 61 11-76 18-89 (89)
139 2q5w_D Molybdopterin convertin 95.7 0.026 8.9E-07 32.4 5.2 60 11-76 16-77 (77)
140 1fm0_D Molybdopterin convertin 95.7 0.038 1.3E-06 32.0 5.8 59 12-76 18-81 (81)
141 3kuz_A Plexin-C1; structural g 95.6 0.17 5.9E-06 32.2 8.9 61 11-71 39-125 (126)
142 2qjl_A URM1, ubiquitin-related 95.2 0.24 8.1E-06 29.9 8.6 73 1-76 2-99 (99)
143 2kvr_A Ubiquitin carboxyl-term 95.2 0.028 9.6E-07 36.1 4.4 33 13-45 58-90 (130)
144 1wgk_A Riken cDNA 2900073H19 p 95.1 0.13 4.4E-06 32.2 7.3 74 1-77 12-109 (114)
145 2cu3_A Unknown function protei 95.1 0.068 2.3E-06 29.7 5.4 60 9-76 5-64 (64)
146 1ef1_A Moesin; membrane, FERM 95.0 0.2 6.9E-06 35.9 9.0 72 1-73 2-79 (294)
147 1h4r_A Merlin; FERM, neurofibr 95.0 0.25 8.6E-06 35.7 9.5 72 1-73 23-99 (314)
148 1vd2_A Protein kinase C, IOTA 94.6 0.2 7E-06 30.0 6.8 46 2-48 8-54 (89)
149 3ig3_A Plxna3 protein; plexin 94.6 0.31 1.1E-05 38.8 9.5 64 11-74 247-336 (627)
150 1rws_A Hypothetical protein PF 94.5 0.0093 3.2E-07 34.7 0.6 54 14-76 24-77 (77)
151 2l52_A Methanosarcina acetivor 94.2 0.36 1.2E-05 29.1 7.5 73 1-76 4-99 (99)
152 2g1e_A Hypothetical protein TA 93.9 0.28 9.6E-06 28.7 6.5 62 14-76 18-90 (90)
153 3ivf_A Talin-1; FERM domain, c 93.7 0.52 1.8E-05 35.0 9.0 72 2-73 87-168 (371)
154 2k9x_A Tburm1, uncharacterized 93.5 0.028 9.7E-07 35.1 1.5 74 1-76 5-102 (110)
155 2kmm_A Guanosine-3',5'-BIS(dip 93.4 0.39 1.3E-05 26.9 6.3 62 1-71 1-62 (73)
156 3hm6_X Plexin-B1; structural g 93.2 0.63 2.2E-05 37.2 8.9 65 11-75 274-364 (644)
157 2i1j_A Moesin; FERM, coiled-co 93.1 0.62 2.1E-05 36.9 9.0 72 1-73 5-82 (575)
158 3qij_A Protein 4.1; cytoskelet 92.8 0.67 2.3E-05 33.4 8.2 73 1-73 18-96 (296)
159 3u52_E Phenol hydroxylase comp 92.7 0.69 2.4E-05 29.0 7.0 61 12-72 39-109 (119)
160 2kmc_A Fermitin family homolog 92.7 1 3.5E-05 27.4 8.3 71 2-72 21-99 (102)
161 4eut_A Serine/threonine-protei 92.5 0.67 2.3E-05 34.2 8.0 53 10-62 321-375 (396)
162 2inc_C TOUB protein; DIIRON, 4 92.5 0.95 3.3E-05 26.6 8.5 60 12-71 14-81 (83)
163 1wgy_A RAP guanine nucleotide 92.2 1.1 3.8E-05 27.5 7.3 68 7-74 16-88 (104)
164 1y8x_B Ubiquitin-activating en 92.1 0.4 1.4E-05 29.2 5.3 59 12-70 6-82 (98)
165 3onh_A Ubiquitin-activating en 91.9 0.94 3.2E-05 28.8 7.0 56 14-70 9-77 (127)
166 1ip9_A BEM1 protein; ubiquitin 91.5 0.74 2.5E-05 27.2 5.8 38 9-48 20-58 (85)
167 3ge3_C Toluene-4-monooxygenase 91.5 1.3 4.4E-05 26.1 7.5 60 12-71 16-82 (84)
168 1j0g_A Hypothetical protein 18 90.9 1.5 5.1E-05 25.7 6.5 64 13-76 26-90 (92)
169 2ylm_A Ubiquitin carboxyl-term 90.5 0.33 1.1E-05 38.1 4.7 32 13-44 38-69 (530)
170 2c7h_A RBBP6, retinoblastoma-b 89.2 1.7 5.7E-05 25.8 6.0 42 3-44 9-52 (86)
171 3qa8_A MGC80376 protein; kinas 88.2 0.53 1.8E-05 38.1 4.4 50 10-59 321-371 (676)
172 1wgr_A Growth factor receptor- 87.8 1.6 5.4E-05 26.6 5.4 67 3-69 12-89 (100)
173 2eel_A Cell death activator CI 87.0 1.8 6.2E-05 25.9 5.2 49 21-72 28-78 (91)
174 2hj1_A Hypothetical protein; s 86.5 2 6.7E-05 26.0 5.3 57 12-73 27-86 (97)
175 1v8c_A MOAD related protein; r 85.9 2.6 9E-05 27.9 6.1 63 14-78 17-89 (168)
176 3h9d_A ATG8, microtubule-assoc 83.8 3.4 0.00012 25.9 5.6 46 14-59 51-97 (119)
177 2dhz_A RAP guanine nucleotide 81.6 4.1 0.00014 25.6 5.3 64 9-72 18-92 (120)
178 1q1o_A Cell division control p 81.6 2.1 7.1E-05 26.0 3.8 28 10-37 22-49 (98)
179 3au4_A Myosin-X; protein-prote 81.4 4.6 0.00016 31.5 6.8 45 1-45 217-263 (555)
180 2ylm_A Ubiquitin carboxyl-term 81.0 1.9 6.6E-05 33.8 4.5 72 3-74 133-219 (530)
181 3hk0_A Growth factor receptor- 80.0 4.4 0.00015 28.8 5.7 56 3-58 11-73 (256)
182 2zjd_A Microtubule-associated 79.9 3.8 0.00013 26.1 4.8 46 14-59 56-103 (130)
183 3m95_A Autophagy related prote 79.1 4.2 0.00014 25.7 4.8 46 14-59 56-102 (125)
184 2r2q_A Gamma-aminobutyric acid 79.0 4.3 0.00015 25.0 4.8 46 14-59 47-93 (110)
185 4gmv_A RAS-associated and plec 79.0 5.5 0.00019 28.7 6.0 67 3-69 34-111 (281)
186 3r8s_T 50S ribosomal protein L 78.9 7.1 0.00024 23.3 5.6 39 11-49 28-67 (93)
187 3tca_A Amyloid beta A4 precurs 77.8 7.8 0.00027 27.1 6.6 38 3-40 37-74 (291)
188 3pvl_A Myosin VIIA isoform 1; 77.0 7.9 0.00027 31.1 6.9 45 1-45 264-309 (655)
189 1eo6_A GATE-16, golgi-associat 77.0 5.4 0.00019 24.8 4.9 59 14-72 48-110 (117)
190 3rui_B Autophagy-related prote 76.2 6.3 0.00021 24.6 5.0 46 14-59 50-96 (118)
191 1f2r_I Inhibitor of caspase-ac 76.1 6.8 0.00023 23.8 4.9 48 21-71 37-88 (100)
192 2lgx_A Fermitin family homolog 74.0 1.1 3.6E-05 27.7 0.9 61 11-71 36-101 (112)
193 1pqs_A Cell division control p 73.4 2.6 8.8E-05 24.4 2.5 36 12-47 3-43 (77)
194 3hvz_A Uncharacterized protein 72.6 11 0.00038 21.6 5.6 61 2-71 7-67 (78)
195 3tve_T 50S ribosomal protein L 70.9 11 0.00037 22.5 4.9 39 11-49 22-61 (92)
196 2v1y_A Phosphatidylinositol-4, 70.4 11 0.00036 23.2 4.9 60 3-62 22-95 (108)
197 1vq8_S 50S ribosomal protein L 69.7 10 0.00034 22.3 4.5 35 10-44 22-56 (85)
198 2zjr_Q 50S ribosomal protein L 69.2 8.6 0.00029 23.0 4.2 36 13-48 25-61 (95)
199 3j21_T 50S ribosomal protein L 65.5 14 0.00048 21.7 4.6 35 10-44 23-57 (86)
200 4gdk_A Ubiquitin-like protein 61.1 14 0.00047 21.9 4.0 47 13-59 22-70 (91)
201 2nvu_B Maltose binding protein 60.9 21 0.00071 29.1 6.3 59 12-70 713-789 (805)
202 3lxf_A Ferredoxin; iron, iron- 55.9 18 0.00063 21.5 4.1 26 2-27 2-27 (104)
203 1ibx_B Chimera of IGG binding 55.1 8 0.00027 25.0 2.4 39 21-59 82-124 (145)
204 3chb_D Cholera toxin; toxin/re 53.9 19 0.00064 21.1 3.6 31 3-33 39-69 (104)
205 2zkr_s 60S ribosomal protein L 53.5 23 0.0008 23.2 4.4 37 11-47 94-131 (156)
206 1wmh_B Partitioning defective- 52.1 34 0.0012 20.1 5.4 45 3-47 7-54 (86)
207 4dxa_B KREV interaction trappe 51.4 21 0.00071 25.7 4.4 41 1-45 6-51 (322)
208 4a17_R RPL23A, 60S ribosomal p 50.9 29 0.001 22.5 4.6 34 10-43 87-120 (150)
209 1n62_A Carbon monoxide dehydro 49.9 14 0.00048 24.4 3.0 27 2-29 5-31 (166)
210 3hrd_D Nicotinate dehydrogenas 48.6 15 0.00051 24.1 3.0 26 2-28 5-30 (160)
211 3u5e_X 60S ribosomal protein L 48.6 31 0.0011 22.2 4.4 33 11-43 80-112 (142)
212 1d4b_A CIDE B, human cell deat 48.6 9.5 0.00032 24.0 1.9 38 21-59 54-93 (122)
213 3w1s_C Ubiquitin-like protein 47.7 41 0.0014 19.8 6.2 55 14-70 26-83 (91)
214 2al6_A Focal adhesion kinase 1 47.1 19 0.00066 26.6 3.7 55 5-59 12-77 (375)
215 1wz3_A Autophagy 12B, ATG12B, 45.5 28 0.00096 20.7 3.6 45 13-59 30-75 (96)
216 1ffv_A CUTS, iron-sulfur prote 45.4 18 0.00061 23.8 3.0 27 2-29 5-31 (163)
217 2bt6_A Adrenodoxin 1; rutheniu 44.7 31 0.0011 20.4 3.9 26 2-27 8-33 (108)
218 2ns5_A Partitioning-defective 43.7 47 0.0016 19.4 8.6 68 1-70 3-80 (85)
219 1rm6_C 4-hydroxybenzoyl-COA re 42.9 29 0.001 22.6 3.7 27 3-30 5-31 (161)
220 1t3q_A Quinoline 2-oxidoreduct 42.9 28 0.00095 22.8 3.6 28 1-29 10-37 (168)
221 4a6q_A Histone deacetylase com 42.7 22 0.00077 22.9 3.0 62 13-74 56-140 (143)
222 3iz5_X 60S ribosomal protein L 41.2 33 0.0011 22.3 3.7 34 11-44 90-123 (152)
223 2wlb_A ETP1-FD, electron trans 41.1 42 0.0015 19.6 4.0 26 2-27 5-30 (103)
224 1ltr_D ETB-R2, heat-labIle ent 41.0 25 0.00085 20.9 2.8 30 3-32 38-67 (113)
225 4dxe_H ACP, acyl carrier prote 40.1 23 0.00079 21.0 2.7 48 13-69 18-66 (101)
226 2y5c_A Adrenodoxin-like protei 39.8 41 0.0014 19.9 3.9 25 2-26 7-31 (109)
227 4eku_A Protein-tyrosine kinase 39.5 49 0.0017 24.7 4.9 52 8-59 35-97 (392)
228 2ktr_A Sequestosome-1; autopha 38.8 57 0.002 20.2 4.4 27 21-47 57-84 (117)
229 1uwm_A Ferredoxin VI, FDVI; el 37.1 60 0.0021 19.0 4.3 25 2-26 2-26 (106)
230 3e19_A FEOA; transcriptional r 36.4 23 0.00079 19.6 2.2 23 54-76 29-51 (77)
231 3hui_A Ferredoxin; cytochrome 36.3 49 0.0017 20.5 3.9 25 2-26 23-47 (126)
232 1tt5_B Ubiquitin-activating en 35.1 11 0.00039 28.6 0.8 55 15-69 345-417 (434)
233 1xlq_A Putidaredoxin, PDX; [2F 34.5 63 0.0021 18.9 4.1 26 2-27 2-27 (106)
234 1jq4_A Methane monooxygenase c 34.1 51 0.0018 19.0 3.6 27 2-28 6-32 (98)
235 2kkc_A Sequestosome-1; P62, PB 33.7 79 0.0027 19.0 5.0 27 21-47 42-69 (102)
236 1x4v_A Hypothetical protein LO 33.7 5.2 0.00018 22.2 -0.9 29 87-116 11-39 (63)
237 1wfy_A Regulator of G-protein 33.7 62 0.0021 19.6 3.8 59 8-69 25-85 (104)
238 1awd_A Ferredoxin; electron tr 33.0 60 0.0021 18.5 3.7 27 1-28 1-27 (94)
239 2jyp_A Aragonite protein AP7; 32.9 29 0.00099 16.2 1.8 28 92-119 8-36 (36)
240 2cs4_A Protein C12ORF2; GTP bi 32.8 46 0.0016 19.9 3.1 64 9-74 15-87 (95)
241 1yfb_A Transition state regula 32.8 25 0.00087 18.9 1.8 30 43-72 18-47 (59)
242 3f5r_A FACT complex subunit PO 32.3 41 0.0014 22.8 3.1 42 2-43 86-127 (191)
243 2cu1_A Mitogen-activated prote 32.1 86 0.0029 18.9 4.7 42 3-47 9-51 (103)
244 3cjl_A Domain of unknown funct 32.1 43 0.0015 19.7 2.8 38 2-39 7-46 (88)
245 1b44_D ETB-POL, protein (B-POL 31.8 33 0.0011 20.8 2.3 30 3-32 38-67 (129)
246 2dls_A PDZ-rhogef, RHO guanine 31.7 72 0.0025 17.9 4.9 44 31-74 42-86 (93)
247 2h3j_A Hypothetical protein PA 31.2 31 0.0011 18.8 2.1 21 54-74 25-45 (75)
248 1dd4_C 50S ribosomal protein L 30.3 44 0.0015 16.5 2.3 20 20-39 12-34 (40)
249 1frr_A Ferredoxin I; electron 30.0 76 0.0026 18.0 3.8 25 2-27 3-27 (95)
250 1y8q_B Anthracycline-, ubiquit 29.6 75 0.0026 25.5 4.7 58 12-69 449-519 (640)
251 2y3a_A Phosphatidylinositol-4, 29.5 78 0.0027 27.2 5.0 69 3-72 54-136 (1092)
252 1wfv_A Membrane associated gua 29.2 52 0.0018 18.8 3.0 45 31-76 49-97 (103)
253 2ddz_A 190AA long hypothetical 28.6 14 0.00048 25.0 0.3 28 43-70 14-41 (190)
254 2i1s_A Hypothetical protein; m 28.4 1.3E+02 0.0044 19.8 5.6 28 13-40 24-51 (188)
255 3eud_A Protein SHQ1; CS domain 28.3 91 0.0031 19.2 4.0 46 35-80 57-103 (115)
256 2pkt_A PDZ and LIM domain prot 28.0 83 0.0028 17.5 4.9 45 31-75 40-86 (91)
257 3bbo_V Ribosomal protein L23; 27.7 20 0.00067 24.4 0.9 37 11-47 132-169 (198)
258 2l66_A SSO7C4, transcriptional 27.4 25 0.00085 18.2 1.2 27 46-72 11-37 (53)
259 2j0j_A Focal adhesion kinase 1 27.3 2.2E+02 0.0077 22.4 7.2 62 12-73 23-96 (656)
260 3khf_A Microtubule-associated 27.1 84 0.0029 17.8 3.7 45 31-75 47-93 (99)
261 2lx9_A Ferrous iron transport 27.0 49 0.0017 18.8 2.5 21 54-74 24-44 (83)
262 2vsp_A PDZ domain-containing p 26.9 87 0.003 17.4 3.8 45 30-74 39-85 (91)
263 3abf_A 4-oxalocrotonate tautom 26.9 69 0.0024 16.5 3.0 24 23-46 21-44 (64)
264 1hfo_A Migration inhibitory fa 26.8 63 0.0021 19.0 3.1 22 25-46 78-99 (113)
265 4dh4_A MIF; trimer, isomerase; 26.7 63 0.0022 19.2 3.1 25 23-47 77-101 (114)
266 2nnz_A Hypothetical protein; b 26.6 32 0.0011 22.3 1.8 29 1-30 30-61 (153)
267 1otf_A 4-oxalocrotonate tautom 26.5 68 0.0023 16.3 2.9 21 25-45 22-42 (62)
268 2k5l_A FEOA; structure, NESG, 26.4 45 0.0015 18.7 2.3 21 54-74 26-46 (81)
269 3djh_A Macrophage migration in 26.2 65 0.0022 19.2 3.1 24 23-46 76-99 (114)
270 2opa_A Probable tautomerase YW 26.1 71 0.0024 16.2 3.0 22 24-45 21-42 (61)
271 2i4s_A General secretion pathw 25.2 1.1E+02 0.0036 17.7 5.3 41 31-71 50-92 (105)
272 2i6v_A General secretion pathw 24.9 96 0.0033 17.2 4.3 46 30-76 31-78 (87)
273 2v90_A PDZ domain-containing p 24.8 97 0.0033 17.4 3.6 45 31-75 43-89 (96)
274 3b64_A Macrophage migration in 24.6 73 0.0025 18.7 3.1 25 23-47 77-101 (112)
275 2wkb_A Macrophage migration in 24.2 73 0.0025 19.3 3.1 26 23-48 77-102 (125)
276 2xsg_A Ccman5; hydrolase, mann 24.2 2.1E+02 0.0073 23.6 6.5 58 2-73 696-753 (774)
277 1zrj_A E1B-55KDA-associated pr 23.9 48 0.0016 17.2 1.9 18 20-38 12-29 (50)
278 3m20_A 4-oxalocrotonate tautom 23.9 86 0.0029 16.3 3.6 22 24-45 20-41 (62)
279 3kan_A D-dopachrome tautomeras 23.7 76 0.0026 19.1 3.1 25 23-47 77-101 (117)
280 2gjh_A Designed protein; oblig 23.5 63 0.0021 16.9 2.2 16 63-78 40-55 (62)
281 3fwt_A Macrophage migration in 23.3 77 0.0026 19.6 3.1 26 23-48 98-123 (133)
282 3mhx_A Putative ferrous iron t 23.3 46 0.0016 18.8 1.9 21 54-74 29-49 (85)
283 2lte_A Specialized acyl carrie 28.8 17 0.0006 21.6 0.0 44 22-74 27-70 (103)
284 3kh0_A Ralgds, ralgef, RAL gua 22.9 1.5E+02 0.0053 18.8 8.4 75 2-76 29-111 (140)
285 2k4y_A FEOA-like protein; GFT 22.8 57 0.002 18.5 2.3 21 54-74 29-49 (86)
286 3m21_A Probable tautomerase HP 22.8 87 0.003 16.5 3.0 23 23-45 23-45 (67)
287 3ejb_A Acyl carrier protein; p 22.8 1.1E+02 0.0039 17.5 3.7 48 16-72 17-65 (97)
288 2bkf_A Zinc-finger protein NBR 22.7 1.2E+02 0.0042 17.7 6.0 36 9-46 14-51 (87)
289 2k0q_A Putative uncharacterize 22.5 48 0.0016 18.7 1.7 15 56-70 7-21 (74)
290 2he4_A Na(+)/H(+) exchange reg 22.4 1.1E+02 0.0037 16.9 5.1 44 31-74 41-86 (90)
291 2kv8_A RGS12, regulator of G-p 22.3 1E+02 0.0036 16.7 3.8 19 34-52 39-57 (83)
292 3fwu_A Macrophage migration in 22.1 78 0.0027 19.6 3.0 26 23-48 98-123 (133)
293 3ry0_A Putative tautomerase; o 22.1 93 0.0032 16.2 3.0 21 25-45 22-42 (65)
294 2fqc_A Conotoxin PL14A; alpha- 22.0 39 0.0013 14.9 1.1 17 94-111 9-25 (26)
295 1h1j_S THO1 protein; SAP domai 22.0 55 0.0019 17.1 1.8 18 20-38 7-24 (51)
296 2w4f_A Protein LAP4; structura 21.9 1.1E+02 0.0039 17.0 4.7 43 31-73 47-91 (97)
297 1twf_L ABC10-alpha, DNA-direct 21.9 40 0.0014 18.8 1.4 24 92-117 27-53 (70)
298 2do1_A Nuclear protein HCC-1; 21.8 68 0.0023 17.0 2.2 19 19-38 11-29 (55)
299 1iue_A Ferredoxin; electron tr 21.8 1.2E+02 0.0041 17.4 3.6 25 2-27 4-28 (98)
300 2pzd_A Serine protease HTRA2; 21.6 62 0.0021 18.9 2.3 20 33-52 50-69 (113)
301 3pvv_A Chromosomal replication 21.4 29 0.00099 20.8 0.7 22 20-41 4-25 (101)
302 1b9r_A Protein (terpredoxin); 21.3 55 0.0019 19.1 2.1 26 2-27 2-27 (105)
303 1wwt_A Threonyl-tRNA synthetas 21.2 1.2E+02 0.0041 16.9 5.2 61 2-70 11-71 (88)
304 3t5s_A Gilaa.00834.A, macropha 21.1 90 0.0031 19.4 3.1 26 23-48 98-123 (135)
305 2kvu_A MKL/myocardin-like prot 21.0 64 0.0022 18.4 2.1 19 19-38 27-45 (75)
306 3mb2_A 4-oxalocrotonate tautom 20.7 1.1E+02 0.0037 16.4 3.1 20 25-44 23-42 (72)
307 1af8_A Actinorhodin polyketide 20.7 1.2E+02 0.004 16.6 3.7 49 20-73 4-52 (86)
308 2o2t_A Multiple PDZ domain pro 20.5 1.2E+02 0.0041 17.7 3.6 44 30-73 61-108 (117)
309 2wvx_A Mannosidase, putative a 20.5 1.9E+02 0.0065 23.7 5.5 59 2-74 659-717 (744)
310 3mb2_B 4-oxalocrotonate tautom 20.5 1.3E+02 0.0043 16.9 3.2 23 30-52 29-51 (72)
311 3hhm_A Phosphatidylinositol-4, 20.5 1.4E+02 0.0049 25.7 4.9 69 3-72 45-127 (1091)
312 1wri_A Ferredoxin II, ferredox 20.4 1.3E+02 0.0044 17.0 3.9 27 2-29 3-29 (93)
313 1vku_A Acyl carrier protein; T 20.2 1E+02 0.0035 18.0 3.1 40 21-69 17-56 (100)
314 3gj3_B Nuclear pore complex pr 20.1 43 0.0015 15.8 1.1 20 95-116 9-28 (33)
315 2jrp_A Putative cytoplasmic pr 20.0 45 0.0015 19.3 1.3 32 95-127 33-66 (81)
No 1
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=100.00 E-value=1.1e-45 Score=242.89 Aligned_cols=128 Identities=91% Similarity=1.340 Sum_probs=51.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++||.+++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~ 80 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_dssp ----------------------------------------------------------------------------CCCH
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhccchhhhhhhhcccCCcccccccccCCCCCCCcccCcCC
Q 033059 81 SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 128 (128)
Q Consensus 81 ~~~~~a~k~~~~k~~Cr~c~~r~~~~~~~c~~~~c~~~~~~~~~~~~~ 128 (128)
+++.+|.++++++++|++||+|+|++|++||+++|||+++|||||+||
T Consensus 81 sl~~la~k~n~~~~ic~~~~~~~~~~~~~~~~~~c~~~~~~~~k~~~~ 128 (128)
T 3u5e_m 81 SLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 128 (128)
T ss_dssp HHHHHHHHHHTSCEEETTTCCEECTTCSSCSCTTTTSCCCEEECCCCC
T ss_pred hHHHHHHHhhcceEeeccccccCCchhhccchhhCCCcccccchhhcC
Confidence 999999999999999999999999999999999999999999999987
No 2
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.92 E-value=5.5e-25 Score=135.45 Aligned_cols=81 Identities=53% Similarity=0.842 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||...+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGLR 80 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC------
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred h
Q 033059 81 S 81 (128)
Q Consensus 81 ~ 81 (128)
+
T Consensus 81 ~ 81 (88)
T 4fbj_B 81 Q 81 (88)
T ss_dssp -
T ss_pred c
Confidence 3
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=128.74 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.91 E-value=8.6e-24 Score=125.99 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.91 E-value=5.7e-24 Score=129.54 Aligned_cols=79 Identities=77% Similarity=1.081 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~ 79 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g~ 82 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGGG 82 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999644
No 6
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.91 E-value=1.7e-23 Score=124.70 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 7
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.90 E-value=1.1e-23 Score=128.26 Aligned_cols=80 Identities=88% Similarity=1.144 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+...
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg 83 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGG 83 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC----
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999996543
No 8
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.90 E-value=1.1e-23 Score=129.63 Aligned_cols=78 Identities=85% Similarity=1.232 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~ 78 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999953
No 9
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.90 E-value=1.4e-23 Score=128.58 Aligned_cols=79 Identities=33% Similarity=0.494 Sum_probs=76.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~ 79 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||..+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~ 86 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS 86 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999754
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-23 Score=131.70 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=74.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.90 E-value=8.5e-24 Score=129.62 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.90 E-value=3.4e-23 Score=129.01 Aligned_cols=77 Identities=94% Similarity=1.256 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994
No 13
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.89 E-value=2.7e-23 Score=125.16 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.89 E-value=8.7e-23 Score=125.68 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
|+|+|++..|+++.++++|++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 15
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=126.92 Aligned_cols=77 Identities=36% Similarity=0.620 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999985
No 16
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=2e-22 Score=123.85 Aligned_cols=77 Identities=36% Similarity=0.607 Sum_probs=74.0
Q ss_pred CEEEEEeCCC-CEEEE-EecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g-~~~~i-~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+| +++.+ +|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7899999999 79999 59999999999999999999999999999999999999999999999999999999999984
No 17
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.89 E-value=1.4e-22 Score=129.70 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 18
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.89 E-value=1.3e-22 Score=126.32 Aligned_cols=76 Identities=28% Similarity=0.452 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCC-CccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~-~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.++ ++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|+++++||.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 6899999887 899999999999999999999999999999999999999999 999999999999999999999984
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.88 E-value=1.3e-22 Score=125.42 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998874
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.88 E-value=1.1e-22 Score=127.15 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.++|.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.88 E-value=2.4e-22 Score=123.86 Aligned_cols=76 Identities=33% Similarity=0.563 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+| +|++|+++++.+++.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 899999999988774
No 22
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.88 E-value=3.2e-22 Score=125.21 Aligned_cols=77 Identities=95% Similarity=1.295 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999884
No 23
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=125.87 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++ |+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999998 7899999999999999999999999999999999999999999999999999999999999999997
No 24
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.88 E-value=1.9e-22 Score=123.08 Aligned_cols=72 Identities=33% Similarity=0.489 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEE-cCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~-L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999875
No 25
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=8e-22 Score=118.34 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEE-EEE-ecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~-~i~-v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|++.+|+++ .++ |++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||++|++|++++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999885 899 999999999999999999999999999999999999999999999999999999875
No 26
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=125.46 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 27
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=6.2e-22 Score=122.81 Aligned_cols=77 Identities=29% Similarity=0.465 Sum_probs=72.6
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHhhh--CCCCCCeEEEeCCEEcCCCCccccc--cccCCcEEEEEEeec
Q 033059 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (128)
Q Consensus 1 m~i~vk~~~g~--~~~i~v~~~~tV~~LK~~i~~~~--~ip~~~q~L~~~g~~L~d~~~L~~~--gi~~g~~i~v~~~~~ 74 (128)
|+|+|++.+++ ++.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999888 67777879999999999999998 9999999999999999999999999 999999999999999
Q ss_pred CCC
Q 033059 75 GGI 77 (128)
Q Consensus 75 gg~ 77 (128)
||.
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 28
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=1.6e-21 Score=121.49 Aligned_cols=76 Identities=29% Similarity=0.567 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhh---hCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~---~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++...+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 899999999999999999999999999999998 7899999999999999999999999999999999999986554
No 29
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.87 E-value=1.3e-21 Score=133.59 Aligned_cols=77 Identities=96% Similarity=1.296 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999995
No 30
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=1.1e-21 Score=127.96 Aligned_cols=87 Identities=29% Similarity=0.329 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|+|++. |+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+++||...+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~~~ 111 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSSSV 111 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--------
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCCCc
Confidence 68999998 88999999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred hhHHHHHh
Q 033059 81 SLMALARK 88 (128)
Q Consensus 81 ~~~~~a~k 88 (128)
+..++|.+
T Consensus 112 ~~~~~~~~ 119 (125)
T 1j8c_A 112 DKYAAALE 119 (125)
T ss_dssp --------
T ss_pred chhhhhhh
Confidence 66665543
No 31
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.87 E-value=4.5e-22 Score=127.25 Aligned_cols=79 Identities=32% Similarity=0.433 Sum_probs=75.4
Q ss_pred CEEEEEeC---CCCEEEEEecC-CCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~---~g~~~~i~v~~-~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+++ +|+.+.++|++ ++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 78899999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 033059 77 IIE 79 (128)
Q Consensus 77 ~~~ 79 (128)
+.+
T Consensus 108 k~h 110 (111)
T 1we6_A 108 PSS 110 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 755
No 32
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=119.85 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++||| +|++|+++.|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999 8999999875
No 33
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=118.17 Aligned_cols=74 Identities=39% Similarity=0.671 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 34
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.78 E-value=1.3e-23 Score=125.64 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|+|+|++.+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999886
No 35
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.86 E-value=6.6e-24 Score=142.48 Aligned_cols=100 Identities=75% Similarity=0.989 Sum_probs=10.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC---
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI--- 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~--- 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ---CCchhHHHHHhhccchhhhhhhh
Q 033059 78 ---IEPSLMALARKYNQDKMICRKCY 100 (128)
Q Consensus 78 ---~~~~~~~~a~k~~~~k~~Cr~c~ 100 (128)
....|+...++.+..+++....|
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~~ 106 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSYY 106 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCCS
T ss_pred ccccccccccccccccccccceeeEE
Confidence 34445555555544444444444
No 36
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.2e-22 Score=121.43 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHH-HhhhCCCCCCeEEEeCCEEcCCCCccccccc-cCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~--~~~tV~~LK~~i-~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi-~~g~~i~v~~~~ 73 (128)
|+|+|++.+|+++.++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|+++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999998888765 999999999999 9999999999999999999999999999999 799999998764
No 37
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.86 E-value=7.6e-22 Score=123.46 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
|+|+|+++.|+++.++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 38
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.86 E-value=1.7e-21 Score=131.43 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999984
No 39
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-21 Score=124.27 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++....
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999876543
No 40
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.86 E-value=4.7e-21 Score=116.64 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhh---hCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~---~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|++.+|+++.++|++++||.+||++|++. .++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 789999999999999999999999999999998 7899999999999999999999999999999999998764
No 41
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.5e-21 Score=123.18 Aligned_cols=77 Identities=91% Similarity=1.265 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
++|+|+.++|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++++||.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999994
No 42
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.85 E-value=1.7e-21 Score=134.75 Aligned_cols=77 Identities=94% Similarity=1.252 Sum_probs=75.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999984
No 43
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.85 E-value=2.8e-21 Score=124.10 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=71.2
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCcccccccc-------CCcEEEEEEe
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~-------~g~~i~v~~~ 72 (128)
|+++|+...++ ++.++|.+++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||+ ++++|+++++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 77788777675 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCCC
Q 033059 73 LRGGIIE 79 (128)
Q Consensus 73 ~~gg~~~ 79 (128)
.||.|+
T Consensus 81 -~~g~fe 86 (118)
T 2fnj_B 81 -ADDTFE 86 (118)
T ss_dssp -SSSCBC
T ss_pred -CCCcee
Confidence 777543
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.85 E-value=1.3e-21 Score=121.90 Aligned_cols=76 Identities=28% Similarity=0.357 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++. |+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 89999999999999999999999999999999999999999999999999999999999999999884
No 45
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=3.7e-21 Score=120.90 Aligned_cols=75 Identities=35% Similarity=0.479 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+ +.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999998885 7999999999999999999999999999999999999999999999999999999999999886
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=5.5e-21 Score=119.56 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=68.7
Q ss_pred EEEEEeCC----CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 2 ~i~vk~~~----g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
.|.|+..+ ++++.++|++++||.+||++|++..|+|++.|+|+|+|++|+|+.+|++|+|++|++| ++++++|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 36666666 6789999999999999999999999999999999999999999999999999999999 777888764
No 47
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.85 E-value=4.3e-21 Score=120.10 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEE--EecCCCcHHHHHHHH-HhhhCCCCCCeEEEeCCEEcCCCCccccccc-cCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i--~v~~~~tV~~LK~~i-~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi-~~g~~i~v~~~~ 73 (128)
|+|+|++.+|+++.+ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 8888999999999999999999999999999 999999999864
No 48
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.85 E-value=1.4e-21 Score=123.51 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC---------------CeEEEeCCEEcC-CCCccccccccCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~---------------~q~L~~~g~~L~-d~~~L~~~gi~~g 64 (128)
|+|+|+.++|+++.++|++++||.+||++|++.+++|++ .|+|+|+|+.|. |+.+|++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999998873 569999999995 6799999999999
Q ss_pred cEEEEEEeecCCC
Q 033059 65 STLHLVLRLRGGI 77 (128)
Q Consensus 65 ~~i~v~~~~~gg~ 77 (128)
++|+|+.+++|..
T Consensus 88 ~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 88 DEVSFIKKLGQKS 100 (105)
T ss_dssp EEEEEEECSCSCC
T ss_pred CEEEEEehhccCC
Confidence 9999999998864
No 49
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.85 E-value=9.5e-21 Score=113.15 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|+|+|++ +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 8899999999999999999999999999999999999999999999999999999999998764
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=7.3e-21 Score=120.65 Aligned_cols=78 Identities=33% Similarity=0.465 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~ 79 (128)
|+|+|+..+++ +.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++++++|...
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~~ 95 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMG 95 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCCC
Confidence 78999998875 7999999999999999999999999999999999999999999999999999999999999998643
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=5.2e-21 Score=121.37 Aligned_cols=77 Identities=27% Similarity=0.474 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++...+.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999877663
No 52
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.84 E-value=1.3e-20 Score=120.67 Aligned_cols=78 Identities=29% Similarity=0.439 Sum_probs=71.4
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccC-------CcEEEEEEe
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~-------g~~i~v~~~ 72 (128)
|.|+|+...++ ++.+++.+++||.+||++|+...|+|+++|+|+|+|+.|+|++||++|||++ +++|++++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 77888877666 6888999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCCC
Q 033059 73 LRGGIIE 79 (128)
Q Consensus 73 ~~gg~~~ 79 (128)
. +|.|+
T Consensus 81 ~-~~~fE 86 (118)
T 4ajy_B 81 A-DDTFE 86 (118)
T ss_dssp C-SSCCC
T ss_pred c-CCCcc
Confidence 7 55443
No 53
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.84 E-value=9.8e-21 Score=119.34 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=71.9
Q ss_pred CEEEEEeCCC----CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCC-CccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g----~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~-~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|+|+|+...+ +++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+ .+|++|+|++|++|+|+.+.+|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899998754 6899999999999999999999999999999999999999877 6999999999999999999988
Q ss_pred CC
Q 033059 76 GI 77 (128)
Q Consensus 76 g~ 77 (128)
|.
T Consensus 88 g~ 89 (102)
T 1v5o_A 88 GL 89 (102)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 54
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=117.26 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|+|+|+.. |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.++++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 68999998 889999999999999999999999999999999999999999999999999999999999988764
No 55
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.84 E-value=2e-20 Score=120.31 Aligned_cols=78 Identities=28% Similarity=0.544 Sum_probs=72.1
Q ss_pred CEEEEEeC----------CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~----------~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
++|.|+.. +|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 36777765 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 033059 71 LRLRGGII 78 (128)
Q Consensus 71 ~~~~gg~~ 78 (128)
++++||+.
T Consensus 106 ~rl~GGk~ 113 (115)
T 1we7_A 106 LKERSGPS 113 (115)
T ss_dssp ECCCSCCS
T ss_pred EEcCCCCC
Confidence 99999964
No 56
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.83 E-value=2.2e-20 Score=121.14 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHHH-----hhhCCCC--CCeEEEeCCEEcCCCCccccccccCC------cE
Q 033059 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (128)
Q Consensus 1 m~i~vk~~~g~~~-~i~v~~~~tV~~LK~~i~-----~~~~ip~--~~q~L~~~g~~L~d~~~L~~~gi~~g------~~ 66 (128)
|+|+|++.+|+.+ .+++++++||.+||++|+ +..++|+ ++|+|+|+|+.|+|+.+|++|+|++| ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 699999999999999995 4557886 79999999999999999999999988 78
Q ss_pred EEEEEeecCCC
Q 033059 67 LHLVLRLRGGI 77 (128)
Q Consensus 67 i~v~~~~~gg~ 77 (128)
++|+++++||.
T Consensus 97 mhlVlrl~g~~ 107 (126)
T 1se9_A 97 MHVIIQAPVTE 107 (126)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeccCCcc
Confidence 99999999874
No 57
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.82 E-value=5.7e-20 Score=122.58 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999997
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=125.62 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998877
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=127.31 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+++.++|++++||.+||++|+..+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999997
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=121.19 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHh------hhCC--CCCCeEEEeCCEEcCCCCccccccccCCc--EEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~------~~~i--p~~~q~L~~~g~~L~d~~~L~~~gi~~g~--~i~v~ 70 (128)
|+|+|++.+|+++.++|++++||.+||++|++ ..++ |+++|+|+|+|+.|+|+.+|++|+|.+++ +|+|+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 5677 48999999999999999999999999776 78899
Q ss_pred EeecCCC
Q 033059 71 LRLRGGI 77 (128)
Q Consensus 71 ~~~~gg~ 77 (128)
++++++.
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 9887763
No 61
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=2e-19 Score=115.45 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHh------hhCC--CCCCeEEEeCCEEcCCCCccccccccCC--cEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~------~~~i--p~~~q~L~~~g~~L~d~~~L~~~gi~~g--~~i~v~ 70 (128)
|+|+|++.+|+++.++|++++||.+||++|++ ..++ |+++|+|+|.|+.|+|+.+|++|+|..+ .+|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999998 4464 6999999999999999999999999766 577888
Q ss_pred EeecCC
Q 033059 71 LRLRGG 76 (128)
Q Consensus 71 ~~~~gg 76 (128)
+++.+.
T Consensus 97 lr~~~~ 102 (116)
T 1wgh_A 97 ARETLP 102 (116)
T ss_dssp ECSSCS
T ss_pred ccCCCC
Confidence 776544
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=2.6e-19 Score=119.33 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987765
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.81 E-value=2.2e-19 Score=121.04 Aligned_cols=73 Identities=33% Similarity=0.428 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE-e-CCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~-~-~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999999999999 9 7999999999999999999999999983
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-20 Score=116.88 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=66.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|+|+|++ +|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4688887 8889999999999999999999999999999999999999999999999999999999999764
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.80 E-value=4.1e-19 Score=111.91 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.1
Q ss_pred CEEEEEeCCC--CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccc-cCCcEEEEEEe
Q 033059 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi-~~g~~i~v~~~ 72 (128)
|+|+|+...+ .++.++|+|++||.+||++|++++|+|++.|||+|+|+.++|+.+|++||| ++|+++++++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999874 678999999999999999999999999999999999999999999999999 69999999873
No 66
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=113.12 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=63.7
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHhh-hCCC-CCCeEEEeCCEEcCCCCccccc--cccCCcEEEEE
Q 033059 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~--~~~i~v~~~~tV~~LK~~i~~~-~~ip-~~~q~L~~~g~~L~d~~~L~~~--gi~~g~~i~v~ 70 (128)
|+|+|++++++ ++.+++++++||.+||++|++. .++| +++|+|+|+|+.|+|+.+|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999887 6788999999999999999986 4555 5999999999999999999999 99999999874
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.79 E-value=3.2e-19 Score=110.00 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEE-EecCCCcHHHHHHHHHhhhCCCCCCeEEE---eCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~~~~i-~v~~~~tV~~LK~~i~~~~~ip~~~q~L~---~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|+|+|+. .|+++.+ +|++++||.+||++|++.+++|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899997 7889999 99999999999999999999999999999 9999999999999999999999998754
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=6.1e-19 Score=107.64 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
++++..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455668899999999999999999999999999999999999999999999999999999999998753
No 69
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=6.5e-19 Score=109.45 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCC-CccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~-~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+..+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|+|++|++|+|+++.++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999999887 8999999999999998 99999999999999999887654
No 70
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=7e-19 Score=111.69 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---CEEEEEecC---------CCcHHHHHHHHHhhh--CCCCCC-eEEEeCCEEcCCCCccccccccCCc
Q 033059 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (128)
Q Consensus 1 m~i~vk~~~g---~~~~i~v~~---------~~tV~~LK~~i~~~~--~ip~~~-q~L~~~g~~L~d~~~L~~~gi~~g~ 65 (128)
|+|+|++.++ +++.++|++ ++||.+||++|++.+ ++|+++ |+|+|+|+.|+|+.+|++|+|++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999988 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEeec
Q 033059 66 TLHLVLRLR 74 (128)
Q Consensus 66 ~i~v~~~~~ 74 (128)
+|+|+.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999998754
No 71
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=111.44 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=68.3
Q ss_pred EEEEE-eCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 2 ~i~vk-~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
.|.|+ ..+++.+.++++++.||.+||+.++..+++|++.|+|+|+|+.|.|+.||.+|||++|.+|||+++....
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 45555 5567899999999999999999999999999999999999999999999999999999999999986443
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=4.9e-19 Score=110.39 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.0
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~-~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|++ .|+++ .++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899996 67889 6999999999999999999999999999999999999999 9999999999999987543
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.7e-18 Score=106.93 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.1
Q ss_pred CEEEEEeCCCCEEEEEecCC-----CcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCC-CCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~-----~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d-~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|++ .++.+.++|+++ +||.+||++|++.+++|+++|+|+|+|+.|.| +.+|++|+|++|++|+|+.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899998 578999999995 99999999999999999999999999999988 668999999999999998654
No 74
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.76 E-value=4.7e-20 Score=127.08 Aligned_cols=112 Identities=25% Similarity=0.343 Sum_probs=20.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|+|++++|+++.++|++++||.+||++|++..++|+++|+|+|+|++|+|+.+|+ ++++|+|+++++||..+-
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~kr 75 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcccc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999999996421
Q ss_pred ------hhHH-----------HHHhhcc--------chhhhhhhhcccCCcccccccccCCCC
Q 033059 81 ------SLMA-----------LARKYNQ--------DKMICRKCYARLHPRAVNCRKKKCGHS 118 (128)
Q Consensus 81 ------~~~~-----------~a~k~~~--------~k~~Cr~c~~r~~~~~~~c~~~~c~~~ 118 (128)
.|+. ....++- ....|..|+.+.+..+.++|. .||+.
T Consensus 76 kK~~~~tPK~~k~~kKkvkl~~Lk~y~Vd~~Gkv~~~~~~Cp~Cg~g~fma~h~dR~-~CGkC 137 (189)
T 2xzm_9 76 KKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCPKCGPGIFMAKHYDRH-YCGKC 137 (189)
T ss_dssp CCCCCCSSSCCCCCCCCCCCSCCCCEEEETTTEEEECSEECSTTCSSCEEEECSSCE-EETTT
T ss_pred cccccCCCccccccccccCCceeeEEEECCCceEEEccccCCccCCCccccCccCCC-ccCCc
Confidence 1110 0111221 124788899877766767765 66654
No 75
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=1e-17 Score=104.01 Aligned_cols=80 Identities=18% Similarity=0.402 Sum_probs=75.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|.|++.+|+.+.+.|.+++++..|++.++++.++|++.++|+|+|+.|.++.|+++|++++|++|+++++++||....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~~~ 87 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 87 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCCC-
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999995433
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.2e-18 Score=108.37 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=64.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|+. .++++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|+++++|+|+...
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 5788985 68899999999999999999999999999999999999999954 59999999999999987543
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.74 E-value=6e-18 Score=124.52 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998864
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=105.16 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=62.9
Q ss_pred CEEEEEeCCCCEE--EE-EecCCCcHHHHHHHHHhh-hCCCCCCeEEEeC--CEEcCCCCccccccccCCcEEEE
Q 033059 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (128)
Q Consensus 1 m~i~vk~~~g~~~--~i-~v~~~~tV~~LK~~i~~~-~~ip~~~q~L~~~--g~~L~d~~~L~~~gi~~g~~i~v 69 (128)
|+|+|++..|+.+ .+ +|++++||.+||++|++. .++||++|+|+|. |+.|+|+.+|++|+|.+|++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999987764 58 899999999999999994 7999999999976 99999999999999999999875
No 79
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-17 Score=103.60 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=61.9
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeC--CE---Ec-CCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~--g~---~L-~d~~~L~~~gi~~g~~i~v~ 70 (128)
++|+|+...+. .++++|++++||++||++|+..+|+|++.|+|+|. |+ .| +|+.+|++|+|++|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788876553 78999999999999999999999999999999997 45 44 89999999999999999985
No 80
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=104.78 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe--CCEEcCCCCccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~--~g~~L~d~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|.+++..+.|+++.++|++++||.+||++|++.+||||++|+|++ .|+ |+|+.+|++|+|++|++|++++....
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 566677778999999999999999999999999999999999986 566 99999999999999999999876443
No 81
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=8.6e-17 Score=99.19 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=75.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|++.++|+|+|+.|.++.|.++|++++|++|+++..+.||..+.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~~~ 85 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVYLE 85 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcccc
Confidence 57899998999999999999999999999999999999999999999999999999999999999999999999997543
No 82
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.71 E-value=1.7e-17 Score=101.44 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.2
Q ss_pred EEEEEeC--CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe-------CCEEcCCCCccccccccCCcEEEEEEe
Q 033059 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 2 ~i~vk~~--~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~-------~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
.|.|... +.+.+++.+++++||.+||++|+..+|+||+.|+|+| .|+.|+|+.+|++|+|++|++|||+-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4555432 4567889999999999999999999999999999997 478899999999999999999999864
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.70 E-value=1.9e-17 Score=124.74 Aligned_cols=77 Identities=31% Similarity=0.567 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHh---hhCCCCCCeEEEeCCEEcCCCCccccccccCCcEE-EEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~---~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i-~v~~~~~gg 76 (128)
|+|+||+.+|+++.|+|++++||.+||++|+. ..++|+++|+|+|+|+.|+|+.+|++|+|++|++| +++.+.+++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999 56799999999999999999999999999999998 677777776
Q ss_pred C
Q 033059 77 I 77 (128)
Q Consensus 77 ~ 77 (128)
.
T Consensus 88 ~ 88 (368)
T 1oqy_A 88 Q 88 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=5.5e-17 Score=101.17 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=61.4
Q ss_pred EEEEEeCCC--CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCC---EE----cCCCCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g---~~----L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
.|.|++... ..++++|++++||++||++|+..+|+|++.|+|+|.| +. ++|+.+|++|+|++|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 577776543 4789999999999999999999999999999999988 33 4899999999999999999864
No 85
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.67 E-value=4e-16 Score=96.58 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.++.|+++|++++|++|++++++.||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5788998899999999999999999999999999999999999999999999999999999999999999999987
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.7e-16 Score=98.57 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.9
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCC---EE----cCCCCccccccccCCcEEEEEE
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g---~~----L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
+.|+|++.... .+++++++++||.+||++|+..+|+|+++|+|+|.| +. ++|+.+|++|||++|++|+|+-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 35778775442 688999999999999999999999999999999986 43 5899999999999999998864
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=6.1e-17 Score=102.71 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=64.9
Q ss_pred CEEEEEeCCCCEEEEEec-CCCcHHHHHHHHHhhhCCCCCCeEEEeCCE-----------E----cCCCCccccccccCC
Q 033059 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~-~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~-----------~----L~d~~~L~~~gi~~g 64 (128)
|.|+|++.+|.. .++|+ +++||.+||++|++.+++|++.|+|+|.|+ . ++|+.+|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999864 79999 999999999999999999999999999888 4 578999999999999
Q ss_pred cEEEEEEe
Q 033059 65 STLHLVLR 72 (128)
Q Consensus 65 ~~i~v~~~ 72 (128)
++|+|...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998754
No 88
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.3e-16 Score=97.83 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~ 78 (128)
|+|.|++.+|+.+.+.|.+++++..|+..++++.+++++.++|+|+|+.|.++.|.++|++++|++|+|++++.||..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 578999989999999999999999999999999999999999999999999999999999999999999999999953
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.65 E-value=7.3e-16 Score=99.84 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.7
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCC---E---E-cCCCCccccccccCCcEEEEEEe
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g---~---~-L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
|.|+|++..+. .+++++++++||++||++|+..+|+|+++|+|+|.| + . ++|+.+|++|||++|++|||+-.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 46778775443 688999999999999999999999999999999987 3 2 47999999999999999998864
No 90
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=99.63 E-value=1.8e-17 Score=91.27 Aligned_cols=47 Identities=36% Similarity=0.597 Sum_probs=43.1
Q ss_pred CCchhHHHHHhhccchhhhhhhhcccCCcccccccccCCCCCCCcccCcC
Q 033059 78 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 127 (128)
Q Consensus 78 ~~~~~~~~a~k~~~~k~~Cr~c~~r~~~~~~~c~~~~c~~~~~~~~~~~~ 127 (128)
+++++.++|+++++++++||.||+|++++|++||+ |||+ +|||||+.
T Consensus 4 ~e~~~~~lA~k~~~~k~ICrkC~ARnp~~A~~CRK--Cg~~-~LRpKkk~ 50 (56)
T 2ayj_A 4 TDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRR--CHST-NLRLKKKE 50 (56)
T ss_dssp CCSCCSSTTTTCSCCCEEETTTCCEECTTCSSCTT--TCCC-CEEECCCC
T ss_pred cchhHHHHHHHHHhchhhhccccCcCCcccccccC--CCCC-CCCccccc
Confidence 46788899999999999999999999999999995 9965 99999975
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.63 E-value=4.6e-16 Score=94.95 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=62.5
Q ss_pred CEEEEEeCCCCEEEEE-ecCCCcHHHHHHHHHhhhCCCCCCeEEEeC--CEEcC---CCCccccccccCCcEEEEEE
Q 033059 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~-v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~--g~~L~---d~~~L~~~gi~~g~~i~v~~ 71 (128)
|+|.|++.+|+ ..+. +++++||.+||+.|++.+++|+++|+|+|+ ++.|+ |+.+|++|||.+|++|+|.-
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 89999999995 4577 999999999999999999999999999986 47774 68899999999999998764
No 92
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.63 E-value=1.9e-15 Score=95.42 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|.|++ +|+.+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.++.|.++|++++|++|++++++.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788998 89999999999999999999999999999999999999999999999999999999999999999987
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.62 E-value=3.3e-15 Score=88.26 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|++.++|+|+|+.|.++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999986
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.61 E-value=1.2e-15 Score=97.03 Aligned_cols=76 Identities=16% Similarity=0.421 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|.|++.+|+.+.+.|.+++++..|++.++++.+++++.++|+|.|+.|.++.|.++|++++|++|+|++.+.||
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.59 E-value=1.8e-15 Score=112.33 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=65.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE---eCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~---~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|+|+|+. +|+++.++|++++||++||++|++.+|+||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 5788986 688999999999999999999999999999999999 89999999999999999999999988543
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.58 E-value=2.1e-14 Score=86.31 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
|+|.|++.+|+ .+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.++|++++|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999985
No 97
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=1.1e-13 Score=86.11 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=61.0
Q ss_pred EEEEEe---CCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCC------E-Ec-CCCCccccccccCCcEEEEE
Q 033059 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------K-QL-EDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 2 ~i~vk~---~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g------~-~L-~d~~~L~~~gi~~g~~i~v~ 70 (128)
+|+|+. .+++.+++.+++++||.+||.+|+..+|+|+..|+|.|.+ . .| +|..+|++|+|.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 566665 3677899999999999999999999999999999999863 2 35 67889999999999999987
Q ss_pred Ee
Q 033059 71 LR 72 (128)
Q Consensus 71 ~~ 72 (128)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.6e-12 Score=82.85 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
|+|.|+..+|..+.+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|..++++++|++|+|+..+.|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 468888888999999999999999999999999999999999999999999999999999999999999987654
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.33 E-value=9e-12 Score=86.54 Aligned_cols=76 Identities=13% Similarity=0.315 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|.|+. +|....+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|..++++++|++|+++..+.||.
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 4677864 888999999999999999999999999999999999999999999999999999999999999999985
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4.1e-12 Score=87.15 Aligned_cols=76 Identities=12% Similarity=0.326 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|.|+. +|..+.+.|.+++++..|+..++++.|+++..++|+|+|+.|.++.|..++++++|++|+|++.+.||.
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4677764 888999999999999999999999999999999999999999999999999999999999999999994
No 101
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.24 E-value=1.2e-10 Score=68.59 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEEeCCEEcCCCCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
.+.+++.....+.+.|.++++|.+|-.....+.+||++ .++|.|.|..|+++.++++|++++|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45667766667999999999999999999999999999 99999999999999999999999999999875
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.21 E-value=1.7e-12 Score=90.21 Aligned_cols=85 Identities=14% Similarity=0.330 Sum_probs=5.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCCCc
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~~~ 80 (128)
|+|.| ..+|....+.|.+++.+..|++.++++.|++++.++++|+|+.+.++.|.+++++++|++|+++..+.||..-.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~~~ 100 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLTLA 100 (227)
T ss_dssp ---------------------------------------------------------------------------CCCHH
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCchHh
Confidence 56777 66888899999999999999999999999999999999999999999999999999999999999999997444
Q ss_pred hhHHHH
Q 033059 81 SLMALA 86 (128)
Q Consensus 81 ~~~~~a 86 (128)
.+-..|
T Consensus 101 ~l~~~a 106 (227)
T 3v7o_A 101 VLLQIA 106 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.10 E-value=3.8e-11 Score=72.09 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEE---c--CCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~---L--~d~~~L~~~gi~~g~~i~v~ 70 (128)
|.|.|++.+| ++.+++++++|+.+|+++|++.++++++.|.|.++-.+ | .++.+|+++||++|++|++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 5688999887 68899999999999999999999999888777654433 3 47789999999999999874
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-09 Score=66.60 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.6
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
+.|.|+..+|. .+.+.|.+++++..|....+++.+++++.++++|.|..|.++.|..++++++|++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777884 78999999999999999999999999999999999999999999999999999999885
No 105
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.87 E-value=5.2e-10 Score=60.98 Aligned_cols=39 Identities=41% Similarity=0.611 Sum_probs=34.4
Q ss_pred HHhhccchhhhhhhhcccCCcccccccccCCCCCCCcccCcC
Q 033059 86 ARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 127 (128)
Q Consensus 86 a~k~~~~k~~Cr~c~~r~~~~~~~c~~~~c~~~~~~~~~~~~ 127 (128)
+.+...++.+|+.|++++++++.+|++ ||++ +||||++-
T Consensus 7 ie~r~~~k~iCpkC~a~~~~gaw~CrK--CG~~-~lr~k~k~ 45 (51)
T 3j21_g 7 AEARIFKKYVCLRCGATNPWGAKKCRK--CGYK-RLRPKAKE 45 (51)
T ss_dssp HHHHSSSEEECTTTCCEECTTCSSCSS--SSSC-CCEEECCC
T ss_pred HHHHHhCCccCCCCCCcCCCCceecCC--CCCc-cccccccc
Confidence 456677889999999999999999997 9977 99999873
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.85 E-value=1.1e-08 Score=71.55 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=70.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
.|.|+. ++....+.+..++++..|++..+++.|++++.++++|.|+.+.++.+..++.++++++|.++..+.||.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 566766 677889999999999999999999999999999999999999999999999999999999999999985
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.80 E-value=5.2e-10 Score=83.69 Aligned_cols=76 Identities=13% Similarity=0.346 Sum_probs=0.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
++|.|+. +|....+.|..++++..|++.++++.|++++.++++|+|+.+.++.|.+++++++|++|+++..+.||-
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3566766 567788999999999999999999999999999999999999999999999999999999999999993
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.79 E-value=5.6e-08 Score=59.51 Aligned_cols=70 Identities=14% Similarity=0.309 Sum_probs=65.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
+.|.|+. +|....+.+..++....|....+++.|++++.++++|.|..+.++.|-.++++++|++|.+++
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3577775 688899999999999999999999999999999999999999999999999999999999876
No 109
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.64 E-value=2.4e-07 Score=56.85 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=51.4
Q ss_pred EEEEeC-CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEc--CCCCcccccccc-CCcEEEEE
Q 033059 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQ-KESTLHLV 70 (128)
Q Consensus 3 i~vk~~-~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L--~d~~~L~~~gi~-~g~~i~v~ 70 (128)
|+|=++ .+..+.+.+.++.||..||++|++++|||++.|+|+|.|+.| +.+.....|.-. +..-|.++
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 344333 467788999999999999999999999999999999999865 555666666532 33444444
No 110
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.61 E-value=4.4e-09 Score=79.71 Aligned_cols=75 Identities=12% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
.|.|+. ++....+.|..++++..|++.++++.|+++..++++|+|+.|.++.|.+++++++|++|.++..+.||.
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 456655 567778999999999999999999999999999999999999999999999999999999999999995
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.60 E-value=2.9e-07 Score=55.84 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|.|+|-..+++...+.|.|++++.++-++..+++++++++-.|.|+++.|+-+.++.-.||.+|+.+.++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 5788988999999999999999999999999999999999999999999999999999999999999997643
No 112
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.52 E-value=3.7e-07 Score=54.55 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=57.7
Q ss_pred EEEEEe--CCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-----CeEEEeCCEEcCCCCccccccccCCcEEEE
Q 033059 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (128)
Q Consensus 2 ~i~vk~--~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-----~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v 69 (128)
.|++.. ..++.+.+.++...||..|.+.+.+.++++.. .+++.-++..|.++..|++|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466653 46889999999999999999999999886642 356678889999999999999999999975
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.40 E-value=7.8e-07 Score=57.49 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=57.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-------------------------------------CeEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-------------------------------------~q~L~ 44 (128)
.|.|+.++|+..++.|+.+.||++++..|..+.||+.. .++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999998754 22221
Q ss_pred e--CCEEcCCCCccccccccCCcEEEEEEe
Q 033059 45 F--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 45 ~--~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
. .+.-|+++.+|.++||.++++|.+-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 124567899999999999999876543
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.30 E-value=7.9e-06 Score=48.95 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=58.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE--eCCEEc---CCCCccccccccCCcEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~--~~g~~L---~d~~~L~~~gi~~g~~i~v~ 70 (128)
.|.||..+|..+.-.+..++||.+|...|.. .+.++..+.|+ |-.+.| +.+.+|.+.|+.+.++|.|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999888899999999999999987 56777888888 567878 34789999999999998775
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=98.07 E-value=4.1e-05 Score=48.10 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=59.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE--eCCEEcC--C-CCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~--~~g~~L~--d-~~~L~~~gi~~g~~i~v~~ 71 (128)
.|.||.++|..+.-.+..++||.+|.+.|....+.+.....|+ |-.+.+. | +.+|.+.|+.+.++|++..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5889999999999999999999999999998877777777787 6677775 3 6899999999988887654
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.95 E-value=4.5e-05 Score=49.00 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=58.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE--eCCEEc--CC-CCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~--~~g~~L--~d-~~~L~~~gi~~g~~i~v~~ 71 (128)
.|.||.++|..+.-.+..++||.+|...|... +.++....|+ |-.+.| .| +.+|.+.|+.+.++|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999998999999999999999999886 7777788887 668888 33 7899999999988887653
No 117
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.67 E-value=0.00081 Score=38.66 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=50.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|.... ....++++...||.+|.+.+ ++++....+..||..+..+. -+++|+.|.++....||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 677776543 34567888889999998876 56777777889999997655 56789999988766554
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.64 E-value=0.00034 Score=43.81 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=57.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE--eCCEEcC--CCCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~--~~g~~L~--d~~~L~~~gi~~g~~i~v~~ 71 (128)
+|.||..+|+.+.-.+..++||.+|...|... +..+....|+ |-.+.|. .+.+|.+.|+.+.++|.|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888999999999999999865 5556677776 6677775 47899999999998887654
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.55 E-value=0.00041 Score=44.65 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=54.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhh-CCCCCCeEEE--eCCEEcCC-CCccccccccCCcEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~-~ip~~~q~L~--~~g~~L~d-~~~L~~~gi~~g~~i 67 (128)
.|.||..+|..+.-.+..++||.+|.+.|.... +.+.....|+ |-.+.|+| +.+|.+.|+.+...|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999999999999999999999998863 3455667776 66788865 689999999985444
No 120
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.53 E-value=0.00022 Score=41.63 Aligned_cols=65 Identities=14% Similarity=0.308 Sum_probs=49.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+|+........+++++..||.+|-+. .++|++...+..||+.+..+. +.+|++|.++- .-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~-~V~G 65 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR-LIKG 65 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS-SCSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEE-eecc
Confidence 89999887555566899999999998755 599999987889999886555 23488998754 4444
No 121
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00043 Score=41.23 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=54.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe---CCEEcCCCCccccccccC
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~---~g~~L~d~~~L~~~gi~~ 63 (128)
++.|.....+...+.|+|..++.+|--.|.++..++|+...|.. .+..|+-+++|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 56777777778889999999999999999999999999988874 456888899999999986
No 122
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.23 E-value=0.0015 Score=45.68 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=53.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEE--e-CC--EEcCC-CCccccccccCCcEEEEEEeecCCC
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~--~-~g--~~L~d-~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
+.+.++..+||.+|++.+...++++++ +.||. + .+ ..|+| +.+|.+++|.++..|.+-++..+|.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~ 213 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGT 213 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-C
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 557789999999999999999999997 68886 3 23 35665 6799999999999999999988874
No 123
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.16 E-value=0.004 Score=43.87 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=55.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEEe-C----CEEcCC-CCccccccccCCcEEEEEEeecCCC
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~~-~----g~~L~d-~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
+.+.++..+||.+|++.+...++++++ +.||.. . ...|.| +.+|.++++.++..|.+-++...|.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~ 225 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGT 225 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 456778999999999999999999997 688873 3 246665 6899999999999999999988884
No 124
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=97.13 E-value=0.0059 Score=38.23 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=44.7
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhh--CCC------CCCeEEEe----CCEEcCCC-------------CccccccccCC
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 64 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~--~ip------~~~q~L~~----~g~~L~d~-------------~~L~~~gi~~g 64 (128)
+..+.+.|-..+||.++|++|-... ++| ++++-|-+ .|+.|.|. .||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 3457788889999999999996553 444 35666765 24566542 47999999999
Q ss_pred cEEEEEEe
Q 033059 65 STLHLVLR 72 (128)
Q Consensus 65 ~~i~v~~~ 72 (128)
++|.++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99987643
No 125
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.12 E-value=0.0022 Score=38.57 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCCEEEEEecCC-CcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 9 ~g~~~~i~v~~~-~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
+|+ .+++++. .||.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.++....||
T Consensus 26 NGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred CCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 454 3455666 8999998876 5777778888999988532 3334557899999988766554
No 126
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=97.11 E-value=0.003 Score=36.52 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=48.9
Q ss_pred CEEEEEeCCC-CEEEEEecCCCcHHHHHHHHHhhhCCCC--CCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g-~~~~i~v~~~~tV~~LK~~i~~~~~ip~--~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|.|+|+.... +...+++ +..||.+|.+.+....++.. ....+..||+.+.+ .+.-+++|+.|.++....||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 7888887743 2234666 56899999999986533321 45667788887543 23457889999988777665
No 127
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=97.00 E-value=0.0079 Score=36.61 Aligned_cols=71 Identities=13% Similarity=0.298 Sum_probs=48.7
Q ss_pred CEEEEEeCC------C-CEEEEEecCCCcHHHHHHHHHhhhC-C----------CCCCeEEEeCCEEcCCCCcccccccc
Q 033059 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (128)
Q Consensus 1 m~i~vk~~~------g-~~~~i~v~~~~tV~~LK~~i~~~~~-i----------p~~~q~L~~~g~~L~d~~~L~~~gi~ 62 (128)
|+|.|+... | ....+++++..||.+|.+.+..... + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 567777653 3 4577888888999999999977641 1 1244667789987753 45678
Q ss_pred CCcEEEEEEeecCC
Q 033059 63 KESTLHLVLRLRGG 76 (128)
Q Consensus 63 ~g~~i~v~~~~~gg 76 (128)
+|+.|.++....||
T Consensus 85 dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFPPVSGG 98 (98)
T ss_dssp TTCEEEEESCC---
T ss_pred CCCEEEEECCCCCC
Confidence 99999887655554
No 128
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.87 E-value=0.0017 Score=38.21 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=49.3
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHHHhhhCCC-CCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~--~~~tV~~LK~~i~~~~~ip-~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+| +|+.+ +++ ...||.+|-+.+ +++ +...-+..||..+..+ ...+.-+++|+.|.++.-..||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 67777 56544 455 678999998765 777 7778888999998543 44556678999999887676664
No 129
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.86 E-value=0.0019 Score=37.45 Aligned_cols=66 Identities=9% Similarity=0.188 Sum_probs=47.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~ 77 (128)
|+|+| +|+.+. + +..||.+|-+. .++++...-+..||..+.. ....+.-+++|+.|.++.-..||.
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 66666 566544 4 56899998765 4788888888899998843 233445678999999887776664
No 130
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.80 E-value=0.0042 Score=35.08 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=46.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
|+|+| +|+. ++++...||.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.++....||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 56666 5554 4556778999999877 5677778888999987532 1223457889999988766554
No 131
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.022 Score=36.45 Aligned_cols=65 Identities=28% Similarity=0.387 Sum_probs=47.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHhhh--CCC------CCCeEEEe-C---CE-EcCCC-------------Ccccccccc
Q 033059 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQ 62 (128)
Q Consensus 9 ~g~~~~i~v~~~~tV~~LK~~i~~~~--~ip------~~~q~L~~-~---g~-~L~d~-------------~~L~~~gi~ 62 (128)
++..+.+.|-..+||.++|++|-..+ ++| ++++.|-+ . |. .|.|. .||++|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34557788889999999999996653 444 35667765 2 33 36542 479999999
Q ss_pred CCcEEEEEEee
Q 033059 63 KESTLHLVLRL 73 (128)
Q Consensus 63 ~g~~i~v~~~~ 73 (128)
+|++|.+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999987653
No 132
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.67 E-value=0.016 Score=43.24 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=57.8
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhC----CCCCCeEEEe------CCEEcCCCCccccccccCCcEEEEE-
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLV- 70 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~----ip~~~q~L~~------~g~~L~d~~~L~~~gi~~g~~i~v~- 70 (128)
.+.|... +.+-.+.+++++||.+.-..|.++.. .++++--|+. +|.=|++.++|..|++++++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455554 66788999999999999999987764 3567777776 3455788889999999999988754
Q ss_pred ------EeecCCC
Q 033059 71 ------LRLRGGI 77 (128)
Q Consensus 71 ------~~~~gg~ 77 (128)
+.+.+|.
T Consensus 84 ~~~~~~V~l~dg~ 96 (371)
T 3ivf_A 84 KQRPLKIRMLDGT 96 (371)
T ss_dssp CEEEEEEECTTSC
T ss_pred ceeEEEEECcCCC
Confidence 5567774
No 133
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.64 E-value=0.014 Score=37.84 Aligned_cols=63 Identities=33% Similarity=0.540 Sum_probs=46.1
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhh--CCC------CCCeEEEe----CCE-EcCCC-------------CccccccccCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~--~ip------~~~q~L~~----~g~-~L~d~-------------~~L~~~gi~~g 64 (128)
..+.+.|-..+||.++|++|-..+ ++| ++++-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457788889999999999997653 454 34556654 244 36543 37999999999
Q ss_pred cEEEEEEee
Q 033059 65 STLHLVLRL 73 (128)
Q Consensus 65 ~~i~v~~~~ 73 (128)
++|.++.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999987664
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.51 E-value=0.0077 Score=35.79 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~ 48 (128)
|.|.|... -++.|.|++..+..+|.++|+++.+++++...|.|...
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 35666553 58999999999999999999999999999999999764
No 135
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=96.36 E-value=0.034 Score=33.27 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=48.4
Q ss_pred CEEEEEeCC------CCEEEEEecCCCcHHHHHHHHHhhhC-----C-C---C----CCeEEEeCCEEcCCCCccccccc
Q 033059 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-----I-P---P----DQQRLIFAGKQLEDGRTLADYNI 61 (128)
Q Consensus 1 m~i~vk~~~------g~~~~i~v~~~~tV~~LK~~i~~~~~-----i-p---~----~~q~L~~~g~~L~d~~~L~~~gi 61 (128)
|+|+|+... |....+++ +..||.+|.+.+...+. + . . ....+..||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 677777653 32234664 45899999999987652 0 1 1 135677899877643222 3457
Q ss_pred cCCcEEEEEEeecCC
Q 033059 62 QKESTLHLVLRLRGG 76 (128)
Q Consensus 62 ~~g~~i~v~~~~~gg 76 (128)
++|+.|.++....||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 899999998877776
No 136
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=96.28 E-value=0.023 Score=35.87 Aligned_cols=63 Identities=32% Similarity=0.505 Sum_probs=44.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhh--CCC------CCCeEEEe-CC---E-EcCCC-------------CccccccccCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 64 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~--~ip------~~~q~L~~-~g---~-~L~d~-------------~~L~~~gi~~g 64 (128)
..+.+.|-..+||.++|++|-... +.| ++++.|.+ .| . .|.|. .||++|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347778889999999999996543 454 34566654 23 3 35431 47999999999
Q ss_pred cEEEEEEee
Q 033059 65 STLHLVLRL 73 (128)
Q Consensus 65 ~~i~v~~~~ 73 (128)
++|.++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999987654
No 137
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.25 E-value=0.032 Score=33.06 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=52.3
Q ss_pred EEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 15 i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
-.++-..++..||..++.+.+++-+.-.+...+..|+++++|.+-+++-...|.+.+...
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 345667889999999999999999999998999999999999999998888888777653
No 138
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.20 E-value=0.04 Score=32.60 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=45.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhC-C-----CC-----CCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~-i-----p~-----~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
....+++++..||.+|.+.+..... + .. ....+..||+.... +.-+++|+.|.++....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5677888888999999999987652 1 10 12577789998865 3457889999998777665
No 139
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.71 E-value=0.026 Score=32.44 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=42.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCe--EEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q--~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
....+++++..||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.++....||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3456777778899999999876631 11334 677899988654 457889999887655554
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.69 E-value=0.038 Score=32.03 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=41.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhC-----CCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 12 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~~-----ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
...++ .+..||.+|.+.+..... ++.....+..||+.... +.-+++|+.|.++....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45555 567899999999875531 23345677889998754 3457889999987666555
No 141
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=95.58 E-value=0.17 Score=32.18 Aligned_cols=61 Identities=34% Similarity=0.517 Sum_probs=41.7
Q ss_pred CEEEEEecCCCcHHHHHHHHHhh-h---CCCC----CCeEEEe-CC---EEcCC----------C----CccccccccCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDK-E---GIPP----DQQRLIF-AG---KQLED----------G----RTLADYNIQKE 64 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~-~---~ip~----~~q~L~~-~g---~~L~d----------~----~~L~~~gi~~g 64 (128)
..+.+.|-..+||.++|++|-.. + ++|. +++-|-+ .| ..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45778888999999999998543 3 6654 4455543 12 23322 1 36899999999
Q ss_pred cEEEEEE
Q 033059 65 STLHLVL 71 (128)
Q Consensus 65 ~~i~v~~ 71 (128)
++|.++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998763
No 142
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=95.23 E-value=0.24 Score=29.93 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=44.6
Q ss_pred CEEEEEeCC-------C-CEEEEEec--CCCcHHHHHHHHHhhhCCCCC-------------CeEEEeCCEEcCCCCcc-
Q 033059 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-------------QQRLIFAGKQLEDGRTL- 56 (128)
Q Consensus 1 m~i~vk~~~-------g-~~~~i~v~--~~~tV~~LK~~i~~~~~ip~~-------------~q~L~~~g~~L~d~~~L- 56 (128)
|+|+|+... | ....++++ +..||.+|.+.+.+...-... ...+..||.... .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 456666442 2 45667776 678999999999877631111 112334555321 11
Q ss_pred -ccccccCCcEEEEEEeecCC
Q 033059 57 -ADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 57 -~~~gi~~g~~i~v~~~~~gg 76 (128)
.++-+++|+.|.++....||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 24568899999988776665
No 143
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.20 E-value=0.028 Score=36.12 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~ 45 (128)
..+.|..++|+.+|+..|++.+|+|++.|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457888999999999999999999999999974
No 144
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=95.15 E-value=0.13 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=45.9
Q ss_pred CEEEEEeCC------C--CEEEEEecC---CCcHHHHHHHHHhhh-CCCC----------CCeEEEeCCEEcCCCCcc--
Q 033059 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKE-GIPP----------DQQRLIFAGKQLEDGRTL-- 56 (128)
Q Consensus 1 m~i~vk~~~------g--~~~~i~v~~---~~tV~~LK~~i~~~~-~ip~----------~~q~L~~~g~~L~d~~~L-- 56 (128)
|+|.|+... | +.+.++++. ..||.+|-+.|.+.+ +..+ ..+.++.||+... .|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~g 88 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLGE 88 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHCT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccCC
Confidence 567777664 3 356788883 369999999998775 1100 0122333443211 11
Q ss_pred ccccccCCcEEEEEEeecCCC
Q 033059 57 ADYNIQKESTLHLVLRLRGGI 77 (128)
Q Consensus 57 ~~~gi~~g~~i~v~~~~~gg~ 77 (128)
.++-+++|+.|.++....||.
T Consensus 89 ldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 89 LDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTCBCCSSEEEEEEECSCCCC
T ss_pred cCcCCCCCCEEEEeCCCCCCC
Confidence 346688999999988888883
No 145
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=95.11 E-value=0.068 Score=29.73 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=41.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 9 ~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
+|+.+ ++ +..||.+|.+.+ ++++....+..||+.+..+ .-.+.-+++|+.|.++....||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 56554 44 568999998877 5667777788999988532 2223457889999988766554
No 146
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=94.98 E-value=0.2 Score=35.86 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=54.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCC-eEEEe---CCE--EcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~-q~L~~---~g~--~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|.+.|..++| ++.+.+++++|+.+|-+.|....|+...+ .-|.+ +|. -|+.++++.+.++..+....+.++.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4678888888 68899999999999999999999986543 45554 343 4677888888876666655555553
No 147
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=94.96 E-value=0.25 Score=35.75 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=54.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEEe--CCE--EcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~~--~g~--~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
+.+.|..++| ++.+.+++++|+.+|-+.|....++... ..-|.| +|. -|+.+.+|.+.++..+....+.++.
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 3577888888 7889999999999999999999998653 344544 454 3677888988876655655555543
No 148
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.59 E-value=0.2 Score=29.97 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=36.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEEeCCE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGK 48 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~~~g~ 48 (128)
+|.+. ..|....+.++++.+..+|.+++.+.++++.+ .+.+.|...
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34443 35778889999999999999999999998754 478888765
No 149
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=94.55 E-value=0.31 Score=38.82 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=45.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhh--CCC------CCCeEEEe----CCE-EcCCC-------------CccccccccCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~--~ip------~~~q~L~~----~g~-~L~d~-------------~~L~~~gi~~g 64 (128)
..+.+.|-..+||.++|++|-... ++| ++++-|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 457788889999999999996543 444 35566654 233 35442 47999999999
Q ss_pred cEEEEEEeec
Q 033059 65 STLHLVLRLR 74 (128)
Q Consensus 65 ~~i~v~~~~~ 74 (128)
++|.++.+..
T Consensus 327 a~v~L~p~~~ 336 (627)
T 3ig3_A 327 SLVALVPKQV 336 (627)
T ss_dssp CEEEEEEC--
T ss_pred ceEEEEeccc
Confidence 9999987764
No 150
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=94.45 E-value=0.0093 Score=34.70 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=40.0
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
.+++++..||.+|.+.+ ++++....+..||+....+ .-+++|+.|.++....||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45566778999998765 4677777788999988754 457789999887655554
No 151
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=94.16 E-value=0.36 Score=29.12 Aligned_cols=73 Identities=14% Similarity=0.283 Sum_probs=44.7
Q ss_pred CEEEEEeCC------CCEEEEEecCCCcHHHHHHHHHhhhC-CCC---------CCe-------EEEeCCEEcCCCCccc
Q 033059 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLA 57 (128)
Q Consensus 1 m~i~vk~~~------g~~~~i~v~~~~tV~~LK~~i~~~~~-ip~---------~~q-------~L~~~g~~L~d~~~L~ 57 (128)
|+|+|+... |. ..++++ ..||.+|.+.+..... +.. ..+ .+..||+....... .
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~-~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG-L 80 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-T
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-C
Confidence 677887664 22 133444 5899999999977641 111 123 67788886632211 2
Q ss_pred cccccCCcEEEEEEeecCC
Q 033059 58 DYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 58 ~~gi~~g~~i~v~~~~~gg 76 (128)
+.-+++|+.|.++....||
T Consensus 81 ~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 81 ETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCEEEEECCCCCC
Confidence 3357899999987666554
No 152
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=93.90 E-value=0.28 Score=28.73 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=40.7
Q ss_pred EEEecCCCcHHHHHHHHHhhhC------C-----CCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~------i-----p~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
.++++...||.+|.+.+..... + ......+..||+...... -.+.-+++|+.|.++....||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456666899999999977641 1 013456778998775221 123457899999887665554
No 153
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.69 E-value=0.52 Score=34.97 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=55.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCC-CCeEEEeCC---------EEcCCCCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~-~~q~L~~~g---------~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
.+.|..++|....+.+++.+|+.+|-+.|....++.. +..-|.+.. .-|+.++++.+.+.....++.+.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 5778889999999999999999999999999999754 445665532 234567788887776667777766
Q ss_pred ee
Q 033059 72 RL 73 (128)
Q Consensus 72 ~~ 73 (128)
+.
T Consensus 167 Kf 168 (371)
T 3ivf_A 167 KF 168 (371)
T ss_dssp CC
T ss_pred EE
Confidence 53
No 154
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=93.50 E-value=0.028 Score=35.07 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=42.6
Q ss_pred CEEEEEeCC------CCEEEEEecC----CCcHHHHHHHHHhhhCCCCCCeEEE-eCC--E------EcCCCCc---c--
Q 033059 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L-- 56 (128)
Q Consensus 1 m~i~vk~~~------g~~~~i~v~~----~~tV~~LK~~i~~~~~ip~~~q~L~-~~g--~------~L~d~~~---L-- 56 (128)
|+|.|+... |+...++++. ..||.+|-..|.+.+. ..+-.|+ -+| . +|-++.. +
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 456666543 3445677763 2599999998887652 1122222 112 1 2212211 1
Q ss_pred ccccccCCcEEEEEEeecCC
Q 033059 57 ADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 57 ~~~gi~~g~~i~v~~~~~gg 76 (128)
.+|-+++|+.|.++..+.||
T Consensus 83 ldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC
T ss_pred cccCCCCcCEEEEeCCCccc
Confidence 34678999999988777777
No 155
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=93.42 E-value=0.39 Score=26.88 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
|.+.|...+|+. ++++...|+.+|-..+.... +....-...+|+..+-+ +-+.+|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788898778875 56677899999987774332 12223345789877654 3455688888764
No 156
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.16 E-value=0.63 Score=37.20 Aligned_cols=65 Identities=32% Similarity=0.537 Sum_probs=44.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHhh--hCCC------CCCeEEEe----CCE-EcCCC-------------CccccccccCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDK--EGIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~--~~ip------~~~q~L~~----~g~-~L~d~-------------~~L~~~gi~~g 64 (128)
..+.+.|-..+||.++|++|-.. .++| ++++-|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 34778888999999999999644 2444 35556654 233 45442 47999999999
Q ss_pred cEEEEEEeecC
Q 033059 65 STLHLVLRLRG 75 (128)
Q Consensus 65 ~~i~v~~~~~g 75 (128)
++|.++.+...
T Consensus 354 a~v~L~p~~~~ 364 (644)
T 3hm6_X 354 ATVALVPCLTK 364 (644)
T ss_dssp CEEEEEEC---
T ss_pred cEEEEEecccc
Confidence 99998876533
No 157
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=93.15 E-value=0.62 Score=36.91 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=54.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCC-CeEEEeC---C--EEcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q~L~~~---g--~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|.+.|..++| ++.+.|++++|+.+|-..|....|+... .+-|.|- | .-|+.+.+|.+.++..+..+.+.++.
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 3578888888 7889999999999999999999998643 4556552 2 24677888888877666666665554
No 158
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=92.80 E-value=0.67 Score=33.40 Aligned_cols=73 Identities=8% Similarity=0.049 Sum_probs=52.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCC-eEEEeC---CE--EcCCCCccccccccCCcEEEEEEee
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~-q~L~~~---g~--~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
|.+.|..++|....+.|++.+|+.+|-+.|.+..|+...+ .-|.|. |. -|+.++++.+.......++.+.++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvkf 96 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKF 96 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEESS
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEEE
Confidence 4688999999999999999999999999999999976433 455542 32 4677778877654444466665553
No 159
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=92.73 E-value=0.69 Score=29.04 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=48.4
Q ss_pred EEEEEecCCCcHHHHHHHHHh-hhC-------CCCCCeEEEeCCEEcC--CCCccccccccCCcEEEEEEe
Q 033059 12 TITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~-~~~-------ip~~~q~L~~~g~~L~--d~~~L~~~gi~~g~~i~v~~~ 72 (128)
.+.+.|+|+++.++|-+.+-. .++ |+-+...+..+|+... .+++|++.||...+.|.+...
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TP 109 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTP 109 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECT
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCC
Confidence 478999999999999877743 233 5556668889999884 578999999999999977643
No 160
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=92.69 E-value=1 Score=27.42 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=54.1
Q ss_pred EEEEEeCCC---CEEEEEecCCCcHHHHHHHHHhhhCCCC--CCeEEEeCCE---EcCCCCccccccccCCcEEEEEEe
Q 033059 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGK---QLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 2 ~i~vk~~~g---~~~~i~v~~~~tV~~LK~~i~~~~~ip~--~~q~L~~~g~---~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
.|+|...+. ....+.|..+.-|+.+..+|-+...++. ++--|...-+ .|.-..+|..|||+.++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577777554 4577889999999999999988777654 4555554332 578899999999999999988653
No 161
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=92.47 E-value=0.67 Score=34.24 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCE-E-cCCCCcccccccc
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-Q-LEDGRTLADYNIQ 62 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~-~-L~d~~~L~~~gi~ 62 (128)
.....+.+.+..|+.++++.+++.++++++.|.|++.+. . ++.......|.-.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 345668888999999999999999999999999999984 3 3445566666543
No 162
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=92.46 E-value=0.95 Score=26.59 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=48.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhh-C--CC--C-CCeEEEeCC--EEcCCCCccccccccCCcEEEEEE
Q 033059 12 TITLEVESSDTIDNVKAKIQDKE-G--IP--P-DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~-~--ip--~-~~q~L~~~g--~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
...+.|+.++|+.++=++++... | ++ + ...+..++| +.|..+.|+++-||.+-+.|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 35578999999999999997653 3 32 2 246777999 899999999999999999998875
No 163
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=92.16 E-value=1.1 Score=27.53 Aligned_cols=68 Identities=9% Similarity=0.194 Sum_probs=48.8
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE---eCCE--EcCCCCccccccccCCcEEEEEEeec
Q 033059 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 7 ~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~---~~g~--~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..+..-+.+.+..+.|+.+++..++++.+...+++.|+ ++|. .|+++..--.-.+.-...|++..+-.
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd~ 88 (104)
T 1wgy_A 16 ITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDL 88 (104)
T ss_dssp CSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECCS
T ss_pred eccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehHh
Confidence 34555667888889999999999999999877788776 6886 44554433333455567888877643
No 164
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=92.07 E-value=0.4 Score=29.18 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhCCCCC-----------CeEEEeCC-EEcCC------CCccccccccCCcEEEEE
Q 033059 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~~ip~~-----------~q~L~~~g-~~L~d------~~~L~~~gi~~g~~i~v~ 70 (128)
...++|++++|+.+|-+.+.+.-.+... .-.|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999884332221 22333332 12321 467999999999999874
No 165
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=91.90 E-value=0.94 Score=28.83 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=40.2
Q ss_pred EEEecC----CCcHHHHHHHHHhhhCCCCCCeEEEe--CCEEc-----CC--CCccccccccCCcEEEEE
Q 033059 14 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLV 70 (128)
Q Consensus 14 ~i~v~~----~~tV~~LK~~i~~~~~ip~~~q~L~~--~g~~L-----~d--~~~L~~~gi~~g~~i~v~ 70 (128)
.+.|++ ..|+.+|-+.|..++|... ++.+.- ..+.| +| +++|+++|+++|+.|.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 355553 4799999998988888863 555542 23444 22 579999999999998775
No 166
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=91.54 E-value=0.74 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEE-EeCCE
Q 033059 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 48 (128)
Q Consensus 9 ~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L-~~~g~ 48 (128)
++..+.+.|+++.+..+|+.+|..+..+. ++.+ .|++.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde 58 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFD 58 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCC
Confidence 45679999999999999999999999883 4444 45544
No 167
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=91.51 E-value=1.3 Score=26.06 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=49.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhh-C--CC--CCCeEEEeCCEE--cCCCCccccccccCCcEEEEEE
Q 033059 12 TITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~-~--ip--~~~q~L~~~g~~--L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
...+.|+.++|+.++=++++... | ++ |.-.+..++|.. |.++.++++-||++-+.|.++.
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35578999999999999997653 3 32 236788899987 9999999999999999998864
No 168
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=90.89 E-value=1.5 Score=25.67 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=52.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe-CCEEcCCCCccccccccCCcEEEEEEeecCC
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~-~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
..+.|++++....+-...++++++|+..--++. .|--+...++-...=++.|+.+.++.|-+=|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 346888888888888888999999998877764 5566788888888888999999999886654
No 169
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=90.49 E-value=0.33 Score=38.09 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=29.6
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~ 44 (128)
..+.|..++|+.+|++.|++.+|+|++.|||+
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 36789999999999999999999999999986
No 170
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=89.22 E-value=1.7 Score=25.76 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.4
Q ss_pred EEEEeCCCC-EEEEEecC-CCcHHHHHHHHHhhhCCCCCCeEEE
Q 033059 3 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 3 i~vk~~~g~-~~~i~v~~-~~tV~~LK~~i~~~~~ip~~~q~L~ 44 (128)
|+-+..+.+ ...+.++. ..+|.+||.+|..+.++-..+.-|.
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 555665554 34578874 6799999999998887755555553
No 171
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=88.21 E-value=0.53 Score=38.06 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=40.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCE-EcCCCCccccc
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 59 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~-~L~d~~~L~~~ 59 (128)
.+...+.+.++.|+.+|+..|++.+++|++.|.+++.+. .+++....+.+
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 455678889999999999999999999999999987654 56666565554
No 172
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.77 E-value=1.6 Score=26.63 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=45.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCC-eEEE--e----CCEEcCCCCcccc----ccccCCcEEEE
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--F----AGKQLEDGRTLAD----YNIQKESTLHL 69 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~-q~L~--~----~g~~L~d~~~L~~----~gi~~g~~i~v 69 (128)
|.|-..+|....|.|++++|+.++-+.++.+.++..+. --|+ + --+.++|...|-+ ..+.....+.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45556789999999999999999999999998866433 2332 1 1246777765433 34444555544
No 173
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.99 E-value=1.8 Score=25.90 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHhhhCCCCCCeEEEe--CCEEcCCCCccccccccCCcEEEEEEe
Q 033059 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~ip~~~q~L~~--~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
.++.+|+.+....++++....+|+. .|..++|+..+..+. ..|+.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEc
Confidence 4799999999999999866777764 699998877766553 455555543
No 174
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=86.51 E-value=2 Score=25.98 Aligned_cols=57 Identities=7% Similarity=0.075 Sum_probs=41.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhh---hCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 12 TITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~---~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
.+.+++++.+||.++-+.+.-. ..++.+...+..+|+.... +.-+++|+.|.++-.+
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECCCC
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEecc
Confidence 4567888999999998887532 2455556778888888863 3446789999986443
No 175
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=85.86 E-value=2.6 Score=27.94 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=43.4
Q ss_pred EEEecCCCcHHHHHHHHHhhhC-CC---------CCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCCCC
Q 033059 14 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~-ip---------~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg~~ 78 (128)
.++++. .||.+|.+.+..... +. .....+..||+......- .+.-+++|+.|.++....||.+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccccc
Confidence 445655 899999999976631 10 234567789988765322 2345889999999887878754
No 176
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=83.76 E-value=3.4 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=35.8
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCC-eEEEeCCEEcCCCCccccc
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~-q~L~~~g~~L~d~~~L~~~ 59 (128)
.+-|+.+.||+++...|....++++++ +-|+.++.....+.+++++
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 356889999999999999999998876 4555677755566777654
No 177
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=81.57 E-value=4.1 Score=25.63 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHhhhCCCCC------CeEEE---eCCE--EcCCCCccccccccCCcEEEEEEe
Q 033059 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 9 ~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~------~q~L~---~~g~--~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
+..-+.+.+..+.|+.+++..++++.+...+ ++.|+ ++|. .|+++..--.-.+.-...|++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4444567888899999999999999886543 67665 6786 455443322223444677877655
No 178
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=81.55 E-value=2.1 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCC
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip 37 (128)
+..+.+-|+++.+..+|..+|..+++++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4468899999999999999999998865
No 179
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=81.42 E-value=4.6 Score=31.54 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCC--CCeEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~--~~q~L~~ 45 (128)
|.+.|..++|....+.+++.+|+.+|-+.|....|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35778889999999999999999999999999999874 4555654
No 180
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=80.98 E-value=1.9 Score=33.75 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=53.4
Q ss_pred EEEEeCC--CCEEE----EEecCCCcHHHHHHHHHhhhCCCCCCeEEEeC------CEEcC-CCCccccc--cccCCcEE
Q 033059 3 IFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKESTL 67 (128)
Q Consensus 3 i~vk~~~--g~~~~----i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~------g~~L~-d~~~L~~~--gi~~g~~i 67 (128)
|++|..+ .+++. +.|+.+.+|.+|-..|.+..|+|++.--.+|. -..|+ .+.|+.+. +|.+|+.|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII 212 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDII 212 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEE
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEE
Confidence 5555543 23433 56888999999999999999999976544443 23567 57899999 99999999
Q ss_pred EEEEeec
Q 033059 68 HLVLRLR 74 (128)
Q Consensus 68 ~v~~~~~ 74 (128)
.+-....
T Consensus 213 ~fQ~~~~ 219 (530)
T 2ylm_A 213 VFQKDDP 219 (530)
T ss_dssp EEEECCG
T ss_pred EEEecCC
Confidence 8776543
No 181
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=80.02 E-value=4.4 Score=28.77 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=35.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeC-------CEEcCCCCcccc
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~-------g~~L~d~~~L~~ 58 (128)
|.|-..+|....+.|++++|+.+|-+.+..+.+++.+.-+.++. -+.|+|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 44555678899999999999999999998877655444333321 256777665543
No 182
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=79.88 E-value=3.8 Score=26.10 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=35.3
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCeEEE-eCCEEc-CCCCccccc
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY 59 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~-~~g~~L-~d~~~L~~~ 59 (128)
.+-|+.+.||+++...|....++++++--++ |-+..+ ..+.+++++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 3568899999999999999999998876555 655545 456677665
No 183
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=79.13 E-value=4.2 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=34.3
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCe-EEEeCCEEcCCCCccccc
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q-~L~~~g~~L~d~~~L~~~ 59 (128)
.+-|+.+.||+++...|.....+++++- -|+.++.....+.+++++
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 3568899999999999999999988764 444466444556676654
No 184
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=79.04 E-value=4.3 Score=24.96 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCC-eEEEeCCEEcCCCCccccc
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~-q~L~~~g~~L~d~~~L~~~ 59 (128)
.+-|+.+.||+++...|....++++++ +-|+.++.....+.+++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 356888999999999999999988876 4454555544556677665
No 185
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=79.03 E-value=5.5 Score=28.67 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEe---C----CEEcCCCCccccc----cccCCcEEEE
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---A----GKQLEDGRTLADY----NIQKESTLHL 69 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~---~----g~~L~d~~~L~~~----gi~~g~~i~v 69 (128)
|.|-..+|.+..|.|++++|+.||-+.++.+.+++...-+.++ . -+.|.|...+-+. .......+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4454567889999999999999999998888776544332222 1 2567776655443 3344445444
No 186
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=78.89 E-value=7.1 Score=23.33 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=33.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeE-EEeCCEE
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~-L~~~g~~ 49 (128)
..+.|.|++..|=.++|+.++..+++.+.... +...|+.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 57999999999999999999999999998874 4466663
No 187
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=77.84 E-value=7.8 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=31.8
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCC
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~ 40 (128)
|.|-..+|....+.|++++|+.+|-+.+..+.+++...
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 44556678889999999999999999999999976543
No 188
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=77.01 E-value=7.9 Score=31.14 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCC-CCeEEEe
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~-~~q~L~~ 45 (128)
|.+.|..++|....+.|++.+|+.+|-+.|....|+.. +..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45778899999999999999999999999999999643 4556654
No 189
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=77.00 E-value=5.4 Score=24.78 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=39.3
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCe-EEEeCCEEcCCCCccccccc---cCCcEEEEEEe
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q-~L~~~g~~L~d~~~L~~~gi---~~g~~i~v~~~ 72 (128)
.+-|+.+.||+++...|....++++++- -|+.++.....+.+++++-- .++..+++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3568889999999999999999988764 44445554455667766521 12445655543
No 190
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=76.19 E-value=6.3 Score=24.61 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=33.7
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCeE-EEeCCEEcCCCCccccc
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADY 59 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q~-L~~~g~~L~d~~~L~~~ 59 (128)
.+-|+.+.||+++...|....++++++-- |+.++.....+.+++++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 45688999999999999999999886644 44466433456666654
No 191
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=76.05 E-value=6.8 Score=23.79 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHhhhCCCCC--CeEEE--eCCEEcCCCCccccccccCCcEEEEEE
Q 033059 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~ip~~--~q~L~--~~g~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
.++.+|+.+....++++.. ..+|+ ..|..++|+..+..+. ++ |+.+++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~n-T~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SN-TKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SC-CEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CC-CEEEEE
Confidence 5799999999999999753 35655 4799998887766553 44 444443
No 192
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=74.04 E-value=1.1 Score=27.75 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=45.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCC--CCeEEEeCC---EEcCCCCccccccccCCcEEEEEE
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~--~~q~L~~~g---~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
....+.|..+.-|+.+..+|-+...++. ++--|...- -.|.-..+|..|||+.++.+++..
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 5677888888999999999987776653 333444322 257888999999999998887643
No 193
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=73.44 E-value=2.6 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhCCC-----CCCeEEEeCC
Q 033059 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~~ip-----~~~q~L~~~g 47 (128)
.+.|.|+++.+..+|..+|..++++. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57789999999999999999999865 2445666654
No 194
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=72.65 E-value=11 Score=21.56 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=41.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~ 71 (128)
+|+|.+++|.. +.++...|+.|+=..|....+- .-.--..+|+..+-+ +-+++|++|.++.
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~--~~v~AkVNG~~v~L~-----~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGN--RMIGAKVDGRIVPID-----YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHH--TEEEEEETTEEECTT-----CBCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhc--ceEEEEECCEEcCCC-----cccCCCCEEEEEc
Confidence 57888888865 5577788999987777554431 112234588877544 3457889888765
No 195
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=70.92 E-value=11 Score=22.47 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeE-EEeCCEE
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~-L~~~g~~ 49 (128)
..+.+.|++.+|=.++|+.++..+++.+.... +...|+.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 67999999999999999999999999988774 4466653
No 196
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=70.38 E-value=11 Score=23.23 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=39.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhC-CC-------CCCeEEEe---CCE--EcCC-CCcccccccc
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IP-------PDQQRLIF---AGK--QLED-GRTLADYNIQ 62 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~-ip-------~~~q~L~~---~g~--~L~d-~~~L~~~gi~ 62 (128)
|.+=.++|-.+.++++.+.|+.++|+.+-++.. .| +++-.+.. .|. .+.| ++.|.++..-
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 344456888888999999999999999976532 22 33333332 233 4644 5788887654
No 197
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=69.74 E-value=10 Score=22.26 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~ 44 (128)
...+.|.|++..|=.++|+.++..+++.+....-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 35789999999999999999999999998776543
No 198
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=69.19 E-value=8.6 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=31.2
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEE-EeCCE
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 48 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L-~~~g~ 48 (128)
+.|.|+++.|=.++|+.|+..+++.+....- ...|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 8999999999999999999999999988754 35554
No 199
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.49 E-value=14 Score=21.69 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~ 44 (128)
...+.|.|++..|=.++|+.++..+++.+....-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 35789999999999999999999999998776543
No 200
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=61.10 E-value=14 Score=21.88 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=34.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCe-EEEeCCEEc-CCCCccccc
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLADY 59 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q-~L~~~g~~L-~d~~~L~~~ 59 (128)
-.+-|+.+.|++++...|..+.++++++- -|..++..+ ..+.+++++
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 45778899999999999999999987754 444566544 345666544
No 201
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=60.89 E-value=21 Score=29.11 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=39.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhC--CCCCC--------eEEEeCCE--E----c--CCCCccccccccCCcEEEEE
Q 033059 12 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~~--ip~~~--------q~L~~~g~--~----L--~d~~~L~~~gi~~g~~i~v~ 70 (128)
...+.++++.|+.+|-+.|..+.. +.... ..++|... . . .-+++|+++||.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 355778888999999998887533 33222 24555432 1 1 12578999999999998874
No 202
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=55.94 E-value=18 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 68888889999999999999988754
No 203
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=55.15 E-value=8 Score=25.04 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHhhhCCCC--CCeEEE--eCCEEcCCCCccccc
Q 033059 21 DTIDNVKAKIQDKEGIPP--DQQRLI--FAGKQLEDGRTLADY 59 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~ip~--~~q~L~--~~g~~L~d~~~L~~~ 59 (128)
.++.+|+.+....++++. ...+|+ ..|..++|+..+..+
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL 124 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC
Confidence 679999999999999976 366665 468898887766554
No 204
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=53.85 E-value=19 Score=21.10 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhh
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~ 33 (128)
++|...+|.+|.++|+.+.-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 5677778999999999888777777666543
No 205
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=53.51 E-value=23 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEE-EeCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAG 47 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L-~~~g 47 (128)
..+.|.|+.+.|=.++|+.|+..+++.+....- ...|
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~ 131 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD 131 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC
Confidence 478999999999999999999999999887743 3443
No 206
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=52.07 E-value=34 Score=20.07 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.5
Q ss_pred EEEEeCCC-CEEEEEec--CCCcHHHHHHHHHhhhCCCCCCeEEEeCC
Q 033059 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
Q Consensus 3 i~vk~~~g-~~~~i~v~--~~~tV~~LK~~i~~~~~ip~~~q~L~~~g 47 (128)
|.||+.-+ ....+.++ ...+..+|...++....++.....+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 55665533 34456666 45799999999999999988888888865
No 207
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=51.42 E-value=21 Score=25.70 Aligned_cols=41 Identities=7% Similarity=0.197 Sum_probs=31.3
Q ss_pred CEEEEEeCCCCEEEEEecC--CCcHHHHHHHHHhhhCCCCC---CeEEEe
Q 033059 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIF 45 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~--~~tV~~LK~~i~~~~~ip~~---~q~L~~ 45 (128)
++|.|..++|....++|+. ++|+.+|-+ ..|++.. -.-|.+
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~~~~~FaL~~ 51 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQETQQYFTIWI 51 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTTGGGGEEEEE
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCccccCeeEEEE
Confidence 4688999999999999998 899999943 3677642 345554
No 208
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=50.87 E-value=29 Score=22.55 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEE
Q 033059 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (128)
Q Consensus 10 g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L 43 (128)
...+.|.|+...+=.++|+.|+..+++.+....-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 3578999999999999999999999999877654
No 209
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=49.89 E-value=14 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~ 29 (128)
.|.+. .+|+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45553 4899999999999998886544
No 210
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=48.65 E-value=15 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~ 28 (128)
.|.+. .+|+.+.+++++++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 56664 488999999999999888643
No 211
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=48.60 E-value=31 Score=22.21 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=29.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEE
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L 43 (128)
..+.|.|+...+=.++|+.++..+++.+....-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 478999999999999999999999999877654
No 212
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=48.59 E-value=9.5 Score=23.99 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhhhCCCCCCeEEEe--CCEEcCCCCccccc
Q 033059 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~ip~~~q~L~~--~g~~L~d~~~L~~~ 59 (128)
.++.+|+.+..+.+++ ....+|+. +|..++|+..+..+
T Consensus 54 ~SL~EL~~K~~~~l~l-~~~~~lvLeeDGT~VddEeYF~tL 93 (122)
T 1d4b_A 54 ATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLL 93 (122)
T ss_dssp CCSSTHHHHHHHHHSC-CSSCEEEETTTTEEECSTHHHHHS
T ss_pred CCHHHHHHHHHHHhcc-CCCcEEEEEeCCcEEechhHhhcC
Confidence 5789999999999999 45556654 79999888776655
No 213
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=47.67 E-value=41 Score=19.80 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=37.1
Q ss_pred EEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEc-CCCCcccccc--ccCCcEEEEE
Q 033059 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLV 70 (128)
Q Consensus 14 ~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L-~d~~~L~~~g--i~~g~~i~v~ 70 (128)
.+.|+.+.|++++-..|..+.++ +.+-|..+...+ ..+.+++++- -+++..+++.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~ 83 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVS 83 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEE
Confidence 46789999999999999999988 556666677644 3456665541 1234455443
No 214
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=47.09 E-value=19 Score=26.55 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=39.8
Q ss_pred EEeCCCC----EEEEEecCCCcHHHHHHHHHhhhCCCC-CCeEEEe--C--CE--EcCCCCccccc
Q 033059 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--GK--QLEDGRTLADY 59 (128)
Q Consensus 5 vk~~~g~----~~~i~v~~~~tV~~LK~~i~~~~~ip~-~~q~L~~--~--g~--~L~d~~~L~~~ 59 (128)
|...+|+ ...+.+++++|+.+|-..|....|+.. +..-|.+ . |. -|+++.+|.+.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4445666 889999999999999999999999843 2345544 2 22 36777777653
No 215
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=45.52 E-value=28 Score=20.73 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=32.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEc-CCCCccccc
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L-~d~~~L~~~ 59 (128)
-.+.|+.+.|++++...|..+.+++ .+-|+.+...+ ..+.+++++
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 4567889999999999999999887 55554444344 446666554
No 216
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=45.37 E-value=18 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~ 29 (128)
.|.+. .+|+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45553 4899999999999998886544
No 217
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=44.73 E-value=31 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+|..+.+++.+.+||.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 56776678888899999999987643
No 218
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=43.73 E-value=47 Score=19.38 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=41.3
Q ss_pred CEEEEEeCCCCEEEEEecC-CCcHHHHHHHHHhhh----CCCCCC-eEE---Ee-CCEEcCCCCccccccccCCcEEEEE
Q 033059 1 MQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKE----GIPPDQ-QRL---IF-AGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~-~~tV~~LK~~i~~~~----~ip~~~-q~L---~~-~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
|+|+|+.. +..+.+...+ +.||..|-++-..++ +-.++. +.+ .+ +|-+|+.+..|.+. +.+.+.|...
T Consensus 3 MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 78999874 5567777754 569999876554433 232322 222 24 67788878888775 3455555443
No 219
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=42.94 E-value=29 Score=22.56 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=20.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHH
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKI 30 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i 30 (128)
|.+. .+|+.+.+++++.+|+.++-...
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4443 48999999999999988876554
No 220
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=42.88 E-value=28 Score=22.76 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~~ 29 (128)
|.|.+. .+|+.+.+++++.+||.+.-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 445564 4788899999999999886544
No 221
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=42.71 E-value=22 Score=22.90 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=42.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCC-CCC----CeEEEe-----------------CCEE-cCCCCccccccccCCcEEEE
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGI-PPD----QQRLIF-----------------AGKQ-LEDGRTLADYNIQKESTLHL 69 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~i-p~~----~q~L~~-----------------~g~~-L~d~~~L~~~gi~~g~~i~v 69 (128)
+.|-.-.+.|+.+|=..|.+..-- +.- .++++| .|.. -+|++||.+.+..-|+-|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 556666899999999888765321 110 123333 2332 25789999999999999999
Q ss_pred EEeec
Q 033059 70 VLRLR 74 (128)
Q Consensus 70 ~~~~~ 74 (128)
.+-.+
T Consensus 136 aI~pP 140 (143)
T 4a6q_A 136 AITPP 140 (143)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 88544
No 222
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=41.21 E-value=33 Score=22.34 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=29.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEE
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~ 44 (128)
..+.|.|+...+=.++|+.|+..+++.+....-+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 123 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5789999999999999999999999998776543
No 223
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=41.09 E-value=42 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+|....+++.+..|+.+.-
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 56676567888899999999987754
No 224
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=40.96 E-value=25 Score=20.86 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.5
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHh
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~ 32 (128)
++|...+|.+|.++|+.+.-+..-|..|+.
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~er 67 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIER 67 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHH
Confidence 556677899999999988766666665554
No 225
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=40.06 E-value=23 Score=21.02 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCcc-ccccccCCcEEEE
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHL 69 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L-~~~gi~~g~~i~v 69 (128)
+.+...+......|++.|++.++++++. +.++..| .++|+.+-+.+.+
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGlDSL~~veL 66 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGADSLDIAEL 66 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCCCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCCCcHHHHHH
Confidence 4456667778999999999999988664 4556666 7777654443333
No 226
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=39.85 E-value=41 Score=19.95 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~L 26 (128)
+|++...+|..+.+++.+..|+.+.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 4666556888889999999998774
No 227
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=39.47 E-value=49 Score=24.71 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHH--hhhCCC---CCCeEEE--e--CC--EEcCCCCccccc
Q 033059 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLI--F--AG--KQLEDGRTLADY 59 (128)
Q Consensus 8 ~~g~~~~i~v~~~~tV~~LK~~i~--~~~~ip---~~~q~L~--~--~g--~~L~d~~~L~~~ 59 (128)
++|....+.+++++||.++-..|. .+.|+. ++..-|. + .| .-|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677778899999999999999998 566653 3344443 3 22 356788887764
No 228
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=38.76 E-value=57 Score=20.21 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHhhh-CCCCCCeEEEeCC
Q 033059 21 DTIDNVKAKIQDKE-GIPPDQQRLIFAG 47 (128)
Q Consensus 21 ~tV~~LK~~i~~~~-~ip~~~q~L~~~g 47 (128)
.+..+|+.+|...+ ++....+.|.|..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 48999999999998 5666677888764
No 229
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=37.08 E-value=60 Score=18.99 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~L 26 (128)
+|++...+|....+++.+..||.+.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777667888889999999998764
No 230
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=36.39 E-value=23 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.1
Q ss_pred CccccccccCCcEEEEEEeecCC
Q 033059 54 RTLADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~gg 76 (128)
..|.+.|+.+|+.|.+.-+.+.|
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g 51 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG 51 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC
T ss_pred HHHHHCCCCCCCEEEEEEecCCC
Confidence 46888889999988887654433
No 231
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=36.30 E-value=49 Score=20.50 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~L 26 (128)
+|++...+|....+++.+..||.+.
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777767888889999999998774
No 232
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=35.13 E-value=11 Score=28.63 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=25.8
Q ss_pred EEecCCCcHHHHHHHHHhhh--CCCCCC--------eEEEeCCE--EcC------CCCccccccccCCcEEEE
Q 033059 15 LEVESSDTIDNVKAKIQDKE--GIPPDQ--------QRLIFAGK--QLE------DGRTLADYNIQKESTLHL 69 (128)
Q Consensus 15 i~v~~~~tV~~LK~~i~~~~--~ip~~~--------q~L~~~g~--~L~------d~~~L~~~gi~~g~~i~v 69 (128)
+.++++.|+.+|-+.+..+. ++.... ..++|... .|+ -+++|+++|+.+|+.|.+
T Consensus 345 ~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v 417 (434)
T 1tt5_B 345 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV 417 (434)
T ss_dssp CCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEEC
T ss_pred EEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEE
Confidence 45555667777777777653 332222 24555432 122 256899999999998876
No 233
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=34.47 E-value=63 Score=18.91 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+|....+++.+..||.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987653
No 234
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=34.13 E-value=51 Score=18.99 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~ 28 (128)
+|+|...++....+++++..|+.+.-.
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~ 32 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAAL 32 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHH
Confidence 456665556678899999999887643
No 235
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=33.74 E-value=79 Score=19.00 Aligned_cols=27 Identities=4% Similarity=0.090 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHhhhC-CCCCCeEEEeCC
Q 033059 21 DTIDNVKAKIQDKEG-IPPDQQRLIFAG 47 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~-ip~~~q~L~~~g 47 (128)
.|..+|+.++...+. +......|.|..
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 489999999999864 555667887764
No 236
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.67 E-value=5.2 Score=22.16 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=21.1
Q ss_pred HhhccchhhhhhhhcccCCcccccccccCC
Q 033059 87 RKYNQDKMICRKCYARLHPRAVNCRKKKCG 116 (128)
Q Consensus 87 ~k~~~~k~~Cr~c~~r~~~~~~~c~~~~c~ 116 (128)
..+++....|+.- .-++..|..|.+.||.
T Consensus 11 ~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 11 FTNKCERAGCRQR-EMMKLTCERCSRNFCI 39 (63)
T ss_dssp TCCCCCSTTCCCC-CSSCCBCSSSCCBCCH
T ss_pred cCCCCCccCCCCC-CccceECCCCCcccCc
Confidence 3456777777766 4577888888888884
No 237
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=33.66 E-value=62 Score=19.65 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=46.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCE--EcCCCCccccccccCCcEEEE
Q 033059 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHL 69 (128)
Q Consensus 8 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~--~L~d~~~L~~~gi~~g~~i~v 69 (128)
..++++.|...++-++.+.-.-|-.++++..++..+...|. +|+-..+++.. +|-.+.+
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~L 85 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVL 85 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEE
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEE
Confidence 46788888889999999999999999999988888877776 56656666665 4555544
No 238
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=32.97 E-value=60 Score=18.53 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHH
Q 033059 1 MQIFVKTLTGKTITLEVESSDTIDNVKA 28 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~tV~~LK~ 28 (128)
++|++...+| ...+++++..|+.+.-.
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~ 27 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAE 27 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHH
Confidence 3677765565 67889999999877543
No 239
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=32.92 E-value=29 Score=16.21 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=20.3
Q ss_pred chhhhhhhhcccCCcc-cccccccCCCCC
Q 033059 92 DKMICRKCYARLHPRA-VNCRKKKCGHSN 119 (128)
Q Consensus 92 ~k~~Cr~c~~r~~~~~-~~c~~~~c~~~~ 119 (128)
-+-.|.-||+...|.- ..|-.+.|..+|
T Consensus 8 pfhecalcysitdpgerqrcidmycsytn 36 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQRCIDMYCSYTN 36 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTCGGGTTTTSCC
T ss_pred ccchheeEEeecCcchhhhhhhheecccC
Confidence 3457899998776655 788888886543
No 240
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.77 E-value=46 Score=19.85 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=40.3
Q ss_pred CCCEEEE-EecCCCcHHHHHHHHHhhhCCCCCCeEEE--eCCE--EcCCCC----ccccccccCCcEEEEEEeec
Q 033059 9 TGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGK--QLEDGR----TLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 9 ~g~~~~i-~v~~~~tV~~LK~~i~~~~~ip~~~q~L~--~~g~--~L~d~~----~L~~~gi~~g~~i~v~~~~~ 74 (128)
+|....+ -|.+.+|..|+-..+.+..|- +.+..|+ +.|. .|+++. .|...|- ....|.++++-.
T Consensus 15 ~g~er~VsGvT~~TTC~DVV~aL~~~~G~-~~~y~LvE~wRg~ER~L~~~~r~l~~l~~wG~-~~~eV~F~Lr~~ 87 (95)
T 2cs4_A 15 DGVQRIVCGVTEVTTCQEVVIALAQAIGR-TGRYTLIEKWRDTERHLAPHENPIISLNKWGQ-YASDVQLILRRT 87 (95)
T ss_dssp TTEEECCSSBCSSSCHHHHHHHHHHHHSC-CSEEEEEEEETTEEEECCSSSCHHHHHHTTGG-GSTTCEEEEEEE
T ss_pred CCceeEEECCCCCCcHHHHHHHHHhccCC-CccEEEEEecCCCeecCCCcccHHHHHHHhCc-CCCceEEEEEEC
Confidence 5544444 478899999999988888775 4555565 6664 676543 2455563 344555555543
No 241
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=32.76 E-value=25 Score=18.89 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=22.0
Q ss_pred EEeCCEEcCCCCccccccccCCcEEEEEEe
Q 033059 43 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 43 L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
+.-+|+..-.......+||++|+.|.+.+.
T Consensus 18 v~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 18 VDELGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp CCTTCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred ECCCCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 334666665666778889999999887763
No 242
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=32.32 E-value=41 Score=22.77 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=33.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L 43 (128)
+|.|...+|..+.++=-.+.-+..|++.+...++++.+.-.+
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEl 127 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREH 127 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSS
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeee
Confidence 467777778778888667778999999999999998765433
No 243
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.05 E-value=86 Score=18.93 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.6
Q ss_pred EEEEeC-CCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCC
Q 033059 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
Q Consensus 3 i~vk~~-~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g 47 (128)
|.||.- .|++..|.++..-+..+|..++...+|-+ +-|.|-.
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n 51 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTN 51 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEec
Confidence 445443 57889999999999999999999999874 4455553
No 244
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=32.05 E-value=43 Score=19.71 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred EEEEEeCCC--CEEEEEecCCCcHHHHHHHHHhhhCCCCC
Q 033059 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (128)
Q Consensus 2 ~i~vk~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~ip~~ 39 (128)
+|+|..... .++.+++...+.+..+-+.+....+++++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~ 46 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPE 46 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHH
Confidence 578876654 67888999999999999999777766643
No 245
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=31.78 E-value=33 Score=20.82 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHh
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~ 32 (128)
++|...+|.+|.++|+.+.-+..-|..|+.
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~er 67 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIER 67 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHH
Confidence 566677899999999987665555555543
No 246
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=31.67 E-value=72 Score=17.94 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=29.1
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCCCcccccc-ccCCcEEEEEEeec
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRLR 74 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~~~L~~~g-i~~g~~i~v~~~~~ 74 (128)
++..|+.+.++.+..+|..+.+...+.-+. ++.+..|.+.+.-.
T Consensus 42 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~ 86 (93)
T 2dls_A 42 AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGS 86 (93)
T ss_dssp TTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEEC
Confidence 345678888888889999886643222221 45788888877543
No 247
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=31.24 E-value=31 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.0
Q ss_pred CccccccccCCcEEEEEEeec
Q 033059 54 RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..|.+.|+.+|+.|.+.-+.+
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 368889999999998877654
No 248
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=30.25 E-value=44 Score=16.54 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=13.5
Q ss_pred CCcHH---HHHHHHHhhhCCCCC
Q 033059 20 SDTID---NVKAKIQDKEGIPPD 39 (128)
Q Consensus 20 ~~tV~---~LK~~i~~~~~ip~~ 39 (128)
+.||. +|-..+++++|+++.
T Consensus 12 ~lTvlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCSC
T ss_pred hCcHHHHHHHHHHHHHHHCCCcc
Confidence 45654 555667888999864
No 249
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.03 E-value=76 Score=17.98 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.9
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+| ...+++++..|+.+.-
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~ 27 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAA 27 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHH
Confidence 567765666 6788999999987754
No 250
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=29.65 E-value=75 Score=25.54 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=36.8
Q ss_pred EEEEEecC-CCcHHHHHHHH-HhhhCCCCCCe-------EEEeCCEE--cCC--CCccccccccCCcEEEE
Q 033059 12 TITLEVES-SDTIDNVKAKI-QDKEGIPPDQQ-------RLIFAGKQ--LED--GRTLADYNIQKESTLHL 69 (128)
Q Consensus 12 ~~~i~v~~-~~tV~~LK~~i-~~~~~ip~~~q-------~L~~~g~~--L~d--~~~L~~~gi~~g~~i~v 69 (128)
...+.++. ++|+.+|-+.+ .+++++....+ .++|..-. .++ +++|+++++.+|+.+.+
T Consensus 449 ~~~~~~~~~~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~ly~~~~~~~~~~l~~~l~el~v~~~~~~~v 519 (640)
T 1y8q_B 449 EVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQA 519 (640)
T ss_dssp EEEEEECTTTCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEEECSSSSSSTTGGGSBGGGGTCCTTCEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHhhCCCCceEEEEcCCCcEEEeccchhhHHhhhCcHHHhCccCCcEEEe
Confidence 45667764 67999999885 66677654332 23443221 111 46799999998887654
No 251
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=29.46 E-value=78 Score=27.22 Aligned_cols=69 Identities=26% Similarity=0.251 Sum_probs=45.5
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhC--------CCCCCeEEEe-C--CE--Ec-CCCCccccccccCCcEEE
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QL-EDGRTLADYNIQKESTLH 68 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--------ip~~~q~L~~-~--g~--~L-~d~~~L~~~gi~~g~~i~ 68 (128)
|.+=.++|-.+.++|+.+.|++++|++|.++.. ..++.-.+.+ + |. .+ +++..|.++..- -..+.
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~-~p~l~ 132 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF-LPVLK 132 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-SSCEE
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc-ceEEE
Confidence 444566888899999999999999999976522 2244555554 3 32 45 445788887644 33555
Q ss_pred EEEe
Q 033059 69 LVLR 72 (128)
Q Consensus 69 v~~~ 72 (128)
++-+
T Consensus 133 lve~ 136 (1092)
T 2y3a_A 133 LVTR 136 (1092)
T ss_dssp EEES
T ss_pred EEec
Confidence 5554
No 252
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.20 E-value=52 Score=18.81 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=27.8
Q ss_pred HhhhC-CCCCCeEEEeCCEEcCCCCc---cccccccCCcEEEEEEeecCC
Q 033059 31 QDKEG-IPPDQQRLIFAGKQLEDGRT---LADYNIQKESTLHLVLRLRGG 76 (128)
Q Consensus 31 ~~~~~-ip~~~q~L~~~g~~L~d~~~---L~~~gi~~g~~i~v~~~~~gg 76 (128)
++..| +.+.++.+-.+|..+.+... +.... ..+..|.+.+.-.+.
T Consensus 49 A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 49 AIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 44557 88888888899988865321 11111 357777777754443
No 253
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=28.59 E-value=14 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=15.6
Q ss_pred EEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 43 LIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 43 L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
+-|.|.+|..-+....+||+.++.|.+.
T Consensus 14 i~YDGsqi~slWA~~~fgi~gdSIV~Fr 41 (190)
T 2ddz_A 14 IDYDGSAIRSHWAYRNFGILGDSLVVFR 41 (190)
T ss_dssp CCBCSGGGSTTHHHHHHCCCSSEEEEEE
T ss_pred cCcChhhhhHHHHHHhcCCCCCeEEEEE
Confidence 4455555555555566666555555443
No 254
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=28.41 E-value=1.3e+02 Score=19.79 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=24.1
Q ss_pred EEEEecCCCcHHHHHHHHHhhhCCCCCC
Q 033059 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (128)
Q Consensus 13 ~~i~v~~~~tV~~LK~~i~~~~~ip~~~ 40 (128)
..|.|+.+.|+.+|-..|...+|..-..
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 4589999999999999999999976543
No 255
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=28.34 E-value=91 Score=19.25 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=32.1
Q ss_pred CCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeecCC-CCCc
Q 033059 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG-IIEP 80 (128)
Q Consensus 35 ~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~gg-~~~~ 80 (128)
..+|--.||.+.|.+.+|+..=++|.+..|....-+.+..-| -|+.
T Consensus 57 ~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK~~~GE~F~d 103 (115)
T 3eud_A 57 HLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNKNEYFED 103 (115)
T ss_dssp EETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEESSTTCCCCC
T ss_pred ecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcCCcCCCcCCC
Confidence 356777899999999999888889998777543333344444 3443
No 256
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=28.00 E-value=83 Score=17.47 Aligned_cols=45 Identities=7% Similarity=-0.047 Sum_probs=30.1
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCCC--ccccccccCCcEEEEEEeecC
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDGR--TLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~~--~L~~~gi~~g~~i~v~~~~~g 75 (128)
++..|+.+.++.+-.+|..+.+.. .+..+=-..+..+.+.+.-.|
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g 86 (91)
T 2pkt_A 40 AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 445689999999999999987654 222221126788888775433
No 257
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.66 E-value=20 Score=24.36 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHhhhCCCCCCeE-EEeCC
Q 033059 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAG 47 (128)
Q Consensus 11 ~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~-L~~~g 47 (128)
..+.+.|++..+=.++|+.|++.+++.+..+. +...|
T Consensus 132 NkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g 169 (198)
T 3bbo_V 132 NSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD 169 (198)
T ss_dssp CEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC
Confidence 57889999999999999999999999886653 33444
No 258
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=27.38 E-value=25 Score=18.22 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=19.2
Q ss_pred CCEEcCCCCccccccccCCcEEEEEEe
Q 033059 46 AGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
Q Consensus 46 ~g~~L~d~~~L~~~gi~~g~~i~v~~~ 72 (128)
+|+..-.......+||++|+.|.+.+.
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 445444555678889999999987763
No 259
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=27.30 E-value=2.2e+02 Score=22.37 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=40.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhhCCCCC-Ce--EEEeC--CE--EcCCCCcccc-----ccccCCcEEEEEEee
Q 033059 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQ--RLIFA--GK--QLEDGRTLAD-----YNIQKESTLHLVLRL 73 (128)
Q Consensus 12 ~~~i~v~~~~tV~~LK~~i~~~~~ip~~-~q--~L~~~--g~--~L~d~~~L~~-----~gi~~g~~i~v~~~~ 73 (128)
...|.+++++||.+|-..|.+..++... .. ++... |. -|+.+.++.. ..+...+...+.+|.
T Consensus 23 ~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~rv 96 (656)
T 2j0j_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRI 96 (656)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTSCTTSEEEEEEE
T ss_pred eeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhcccCCCcceEEEEEE
Confidence 7889999999999999999999987432 23 44444 33 3466777666 234444444444444
No 260
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=27.09 E-value=84 Score=17.77 Aligned_cols=45 Identities=7% Similarity=0.106 Sum_probs=29.6
Q ss_pred HhhhCCCCCCeEEEeCCEEcCC--CCccccccccCCcEEEEEEeecC
Q 033059 31 QDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d--~~~L~~~gi~~g~~i~v~~~~~g 75 (128)
++..|+.+.++.+..+|..+.+ ...+..+=-..|..+.+.+...|
T Consensus 47 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~ 93 (99)
T 3khf_A 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALE 93 (99)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECC
Confidence 4456899999999999998873 22222221257888888775433
No 261
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=27.01 E-value=49 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.3
Q ss_pred CccccccccCCcEEEEEEeec
Q 033059 54 RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..|.+.|+.+|+.|.++-+.+
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap 44 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAP 44 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 368889999999999887654
No 262
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=26.94 E-value=87 Score=17.40 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred HHhhhCCCCCCeEEEeCCEEcCC--CCccccccccCCcEEEEEEeec
Q 033059 30 IQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 30 i~~~~~ip~~~q~L~~~g~~L~d--~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
-++..|+.+.++.+..+|..+.+ ...+.++=-..+..|.+.+.-.
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~ 85 (91)
T 2vsp_A 39 PADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGK 85 (91)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC-
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 34556788889888899998863 2222222111277887777543
No 263
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=26.90 E-value=69 Score=16.45 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeC
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~ 46 (128)
+..|-+.+++..|+|++.+.+.+.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 445555666778999988876553
No 264
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=26.81 E-value=63 Score=19.03 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=15.7
Q ss_pred HHHHHHHhhhCCCCCCeEEEeC
Q 033059 25 NVKAKIQDKEGIPPDQQRLIFA 46 (128)
Q Consensus 25 ~LK~~i~~~~~ip~~~q~L~~~ 46 (128)
.|-+.+++..|+|+++..+.|.
T Consensus 78 ~i~~~l~~~lgi~~~~v~I~~~ 99 (113)
T 1hfo_A 78 KLFDHLNTKLGIPKNRMYIHFV 99 (113)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHhCcCcCeEEEEEE
Confidence 3344556678999999888764
No 265
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=26.66 E-value=63 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCC
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g 47 (128)
...|-+.+++..|+|++++.+.|..
T Consensus 77 ~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 77 AAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEe
Confidence 3455566677889999999887754
No 266
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=26.63 E-value=32 Score=22.30 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=22.5
Q ss_pred CEEEEEeCCCCEEEEEecCCC---cHHHHHHHH
Q 033059 1 MQIFVKTLTGKTITLEVESSD---TIDNVKAKI 30 (128)
Q Consensus 1 m~i~vk~~~g~~~~i~v~~~~---tV~~LK~~i 30 (128)
|+|.|.. ++.++..++.++. |+.+|.+++
T Consensus 30 ~~I~i~~-~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIRF-ESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEEE-TTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEEE-CCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 5677754 5678888898888 999988754
No 267
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=26.52 E-value=68 Score=16.31 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHHhhhCCCCCCeEEEe
Q 033059 25 NVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 25 ~LK~~i~~~~~ip~~~q~L~~ 45 (128)
.|-+.+.+.+|+|+++..+.+
T Consensus 22 ~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 22 QVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHhCcCcccEEEEE
Confidence 333445566799998876544
No 268
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=26.40 E-value=45 Score=18.70 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.2
Q ss_pred CccccccccCCcEEEEEEeec
Q 033059 54 RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..|.+.|+.+|+.|.+.-+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 468899999999999877654
No 269
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=26.23 E-value=65 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeC
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~ 46 (128)
...|-+.+++..|+|++++-+.|.
T Consensus 76 s~~i~~~l~~~Lgi~~~riyI~f~ 99 (114)
T 3djh_A 76 SKLLCGLLAERLRISPDRVYINYY 99 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEE
Confidence 355666677889999999988764
No 270
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=26.12 E-value=71 Score=16.20 Aligned_cols=22 Identities=9% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhCCCCCCeEEEe
Q 033059 24 DNVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 24 ~~LK~~i~~~~~ip~~~q~L~~ 45 (128)
..|-+.+.+.+|+|+++..+.+
T Consensus 21 ~~i~~~l~~~lg~~~~~v~V~i 42 (61)
T 2opa_A 21 EKVTEAVKETTGASEEKIVVFI 42 (61)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEE
Confidence 3344455566799998876654
No 271
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=25.17 E-value=1.1e+02 Score=17.75 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=27.9
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCCCccccc--cccCCcEEEEEE
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL 71 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~~~L~~~--gi~~g~~i~v~~ 71 (128)
++..|+.+.+..+-.+|+.+.+-..+..+ ....+..+.+.+
T Consensus 50 A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v 92 (105)
T 2i4s_A 50 FESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92 (105)
T ss_dssp HHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEE
Confidence 34568888898888999988765544332 124677777766
No 272
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=24.92 E-value=96 Score=17.18 Aligned_cols=46 Identities=15% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHhhhCCCCCCeEEEeCCEEcCCCCccccc--cccCCcEEEEEEeecCC
Q 033059 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLRGG 76 (128)
Q Consensus 30 i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~--gi~~g~~i~v~~~~~gg 76 (128)
.+++.|+.+.+..+-.+|+.+.+-..+.++ ....+..+.+.+. ++|
T Consensus 31 ~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~-R~g 78 (87)
T 2i6v_A 31 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE-RDG 78 (87)
T ss_dssp HHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEE-ETT
T ss_pred HHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEE-ECC
Confidence 445669999999999999999764433322 1346777777663 344
No 273
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=24.75 E-value=97 Score=17.37 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCC--CccccccccCCcEEEEEEeecC
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 75 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~--~~L~~~gi~~g~~i~v~~~~~g 75 (128)
++..|+.+.++.+..+|..+.+. ..+.++=-..|..|.+.+.-.|
T Consensus 43 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~ 89 (96)
T 2v90_A 43 AKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPE 89 (96)
T ss_dssp HHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCC
Confidence 45568889999999999988762 2222221123788888775443
No 274
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=24.55 E-value=73 Score=18.74 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCC
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g 47 (128)
...|-+.+++..|+|++++.+.|..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 77 TSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 4455556677789999999887654
No 275
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.16 E-value=73 Score=19.27 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCCE
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g~ 48 (128)
+..|-+.+++..|+|++++.+.|..-
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (125)
T 2wkb_A 77 ADKITKILSNHLSVKPRRVYIEFRDC 102 (125)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 55566667788899999998876544
No 276
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium cellulans}
Probab=24.16 E-value=2.1e+02 Score=23.59 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=41.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
+++|+..+|+++.|....... .+ .--|.+.++|+.++.. -|..-.|..|.+|.+.+..
T Consensus 696 ~vti~l~~Gk~~~I~a~~~s~-----------~n--~YIqs~~lNGk~~~~~-~i~h~~i~~GG~L~f~mg~ 753 (774)
T 2xsg_A 696 STTITYDDGSAFTVTADGVSE-----------DA--FYVQSATLDGATFGNT-WVDYATVVGGADLAFRMGE 753 (774)
T ss_dssp EEEEECTTSCEEEEEEETCCS-----------SC--CEEEEEEETTEECCCS-EEEHHHHHTTCEEEEEEES
T ss_pred eEEEECCCCCEEEEEecCCCC-----------CC--ceEEEEEECCEECcCc-eecHHHHcCCCEEEEEECC
Confidence 477887789999998775431 11 2346778899999644 4666668999999988764
No 277
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.94 E-value=48 Score=17.22 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHhhhCCCC
Q 033059 20 SDTIDNVKAKIQDKEGIPP 38 (128)
Q Consensus 20 ~~tV~~LK~~i~~~~~ip~ 38 (128)
.++|.+||+.+..+ |+|.
T Consensus 12 klkV~eLK~eLk~R-gL~~ 29 (50)
T 1zrj_A 12 RLKVNELREELQRR-GLDT 29 (50)
T ss_dssp GSCHHHHHHHHHHT-TCCC
T ss_pred HCcHHHHHHHHHHc-CCCC
Confidence 58999999988764 5654
No 278
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=23.92 E-value=86 Score=16.28 Aligned_cols=22 Identities=5% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhCCCCCCeEEEe
Q 033059 24 DNVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 24 ~~LK~~i~~~~~ip~~~q~L~~ 45 (128)
..|-+.+.+.+|+|+++..+++
T Consensus 20 ~~it~~~~~~lg~~~~~v~V~i 41 (62)
T 3m20_A 20 ERLTSVAAEIYGMDRSAITILI 41 (62)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEE
Confidence 3344445566899998876654
No 279
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.71 E-value=76 Score=19.09 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCC
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g 47 (128)
...|-+.+++..|+|++++-+.|..
T Consensus 77 s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 77 SAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 3455566778899999999887754
No 280
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=23.50 E-value=63 Score=16.86 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=11.6
Q ss_pred CCcEEEEEEeecCCCC
Q 033059 63 KESTLHLVLRLRGGII 78 (128)
Q Consensus 63 ~g~~i~v~~~~~gg~~ 78 (128)
+|+++.+--.+.||..
T Consensus 40 dgdtvtvegqleggsl 55 (62)
T 2gjh_A 40 DGDTVTVEGQLEGGSL 55 (62)
T ss_dssp CSSCEEEEEECCCCCC
T ss_pred cCCEEEEEeEEcCCcc
Confidence 4677777777888764
No 281
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=23.29 E-value=77 Score=19.63 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCCE
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g~ 48 (128)
...|-+.+++..|+|++++-+.|..-
T Consensus 98 s~~i~~~l~~~LgI~~~rvyI~f~d~ 123 (133)
T 3fwt_A 98 TPRIAAAITKECGIPAERIYVFYYST 123 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEEh
Confidence 45566677788999999998877543
No 282
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=23.28 E-value=46 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.4
Q ss_pred CccccccccCCcEEEEEEeec
Q 033059 54 RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..|.+.|+.+|..|.++-+.+
T Consensus 29 ~rL~~lGl~pG~~v~V~~~~p 49 (85)
T 3mhx_A 29 RRLRELGFVKGEEVRMVAKGP 49 (85)
T ss_dssp HHHHHTTCCTTCEEEEEESCS
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 368899999999999887654
No 283
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=28.83 E-value=17 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 22 tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
....|++.|++..+++++. +.++..|.++|+..-+.+.++..+.
T Consensus 27 i~~~l~~ila~~l~i~~~~---------I~~d~~l~dLGlDSL~~veL~~~lE 70 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEE---------ISRDSRMEDLAFDSLVVSELSLKLR 70 (103)
Confidence 4566777777777776543 4556667888887777777776654
No 284
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=22.90 E-value=1.5e+02 Score=18.84 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=47.8
Q ss_pred EEEEEeCCCCEE-EEEecCCCcHHHHHHHHHhhhCCCCC---Ce---EEEeCCEEcC-CCCccccccccCCcEEEEEEee
Q 033059 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPD---QQ---RLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 2 ~i~vk~~~g~~~-~i~v~~~~tV~~LK~~i~~~~~ip~~---~q---~L~~~g~~L~-d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
+|.+...+|..+ .|-+...+-..++-+..-++.+++.+ +. .++-.|++|. .+..=-.|.+.....+.+++|.
T Consensus 29 RVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~ 108 (140)
T 3kh0_A 29 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 108 (140)
T ss_dssp EEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEee
Confidence 455655556554 37787777777777777777776654 33 3445788662 3333334667667788899998
Q ss_pred cCC
Q 033059 74 RGG 76 (128)
Q Consensus 74 ~gg 76 (128)
+++
T Consensus 109 k~~ 111 (140)
T 3kh0_A 109 RTF 111 (140)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 285
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=22.80 E-value=57 Score=18.51 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.3
Q ss_pred CccccccccCCcEEEEEEeec
Q 033059 54 RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 54 ~~L~~~gi~~g~~i~v~~~~~ 74 (128)
..|.+.|+.+|+.|.+.-+.+
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p 49 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAP 49 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 368899999999999877654
No 286
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=22.79 E-value=87 Score=16.49 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEe
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~ 45 (128)
+..|-+.+.+.+|+|+++..+++
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V~i 45 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVVII 45 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEE
Confidence 34444455567899998876654
No 287
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=22.78 E-value=1.1e+02 Score=17.52 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=32.9
Q ss_pred EecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCcc-ccccccCCcEEEEEEe
Q 033059 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLR 72 (128)
Q Consensus 16 ~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L-~~~gi~~g~~i~v~~~ 72 (128)
....+.....|++.|++..+++++. +.++..| .++|+..-+.+.++..
T Consensus 17 ~~t~~~i~~~l~~iia~~l~~~~~~---------i~~d~~l~~dLGlDSL~~vel~~~ 65 (97)
T 3ejb_A 17 GSHMSTIEERVKKIIGEQLGVKQEE---------VTNNASFVEDLGADSLDTVELVMA 65 (97)
T ss_dssp -CCCCCHHHHHHHHHHHHSCCCTTT---------SCTTCBTTTTTCCCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCcCHHH---------CCCCCCchhhcCCCHHHHHHHHHH
Confidence 3445567888999999999988764 4556667 6888766655555444
No 288
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=22.73 E-value=1.2e+02 Score=17.67 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCCEEEEEecC--CCcHHHHHHHHHhhhCCCCCCeEEEeC
Q 033059 9 TGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
Q Consensus 9 ~g~~~~i~v~~--~~tV~~LK~~i~~~~~ip~~~q~L~~~ 46 (128)
.|.+..+.|+. +.|..+|...+...++++ .+.+.|-
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~ 51 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL 51 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE
Confidence 67888888865 889999999999999996 5566554
No 289
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=22.46 E-value=48 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.6
Q ss_pred cccccccCCcEEEEE
Q 033059 56 LADYNIQKESTLHLV 70 (128)
Q Consensus 56 L~~~gi~~g~~i~v~ 70 (128)
-..+.+++|++|++.
T Consensus 7 ~k~v~LkDGstvyiF 21 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVF 21 (74)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred eeeEecCCCcEEEEE
Confidence 356678899999875
No 290
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=22.41 E-value=1.1e+02 Score=16.89 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.3
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCC--CccccccccCCcEEEEEEeec
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~--~~L~~~gi~~g~~i~v~~~~~ 74 (128)
++..|+.+.++.+..+|..+.+. ..+..+=-..+..+.+.+.-.
T Consensus 41 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 86 (90)
T 2he4_A 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86 (90)
T ss_dssp HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcc
Confidence 45568889999999999988664 223222112367777776543
No 291
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=22.27 E-value=1e+02 Score=16.65 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=10.6
Q ss_pred hCCCCCCeEEEeCCEEcCC
Q 033059 34 EGIPPDQQRLIFAGKQLED 52 (128)
Q Consensus 34 ~~ip~~~q~L~~~g~~L~d 52 (128)
.|+.+.++.+..+|..+.+
T Consensus 39 aGl~~GD~I~~ing~~v~~ 57 (83)
T 2kv8_A 39 VGLRAGDQILAVNEINVKK 57 (83)
T ss_dssp TTCCTTCEEEEETTEECSS
T ss_pred cCCCCCCEEEEECCEECCC
Confidence 3455555555566665544
No 292
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=22.08 E-value=78 Score=19.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCCE
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g~ 48 (128)
...|-+.+++..|||++++-+.|..-
T Consensus 98 s~~i~~~l~~~LgI~~~riyI~f~d~ 123 (133)
T 3fwu_A 98 TSIVTAAITKECGIVADRIFVLYFSP 123 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEECC
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEEH
Confidence 45566667788999999998877543
No 293
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.08 E-value=93 Score=16.22 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=13.4
Q ss_pred HHHHHHHhhhCCCCCCeEEEe
Q 033059 25 NVKAKIQDKEGIPPDQQRLIF 45 (128)
Q Consensus 25 ~LK~~i~~~~~ip~~~q~L~~ 45 (128)
.|-+.+.+.+|+|+++..+++
T Consensus 22 ~it~~~~~~lg~p~~~v~V~i 42 (65)
T 3ry0_A 22 ALTAAAHETLGTPVEAVRVIV 42 (65)
T ss_dssp HHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHhCcCcccEEEEE
Confidence 333444556789998876654
No 294
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=22.03 E-value=39 Score=14.93 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=9.7
Q ss_pred hhhhhhhcccCCcccccc
Q 033059 94 MICRKCYARLHPRAVNCR 111 (128)
Q Consensus 94 ~~Cr~c~~r~~~~~~~c~ 111 (128)
+.||.-++..-|-| +||
T Consensus 9 maCR~g~GH~YPfC-~Cr 25 (26)
T 2fqc_A 9 LACRAGIGHKYPFC-HCR 25 (26)
T ss_dssp HHHHHTGGGTCGGG-CCC
T ss_pred HHHhccCCccCCcC-CCC
Confidence 56776666655554 443
No 295
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=21.97 E-value=55 Score=17.07 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.7
Q ss_pred CCcHHHHHHHHHhhhCCCC
Q 033059 20 SDTIDNVKAKIQDKEGIPP 38 (128)
Q Consensus 20 ~~tV~~LK~~i~~~~~ip~ 38 (128)
..||.+||+.+..+ |++.
T Consensus 7 kltV~eLK~~Lk~R-GL~~ 24 (51)
T 1h1j_S 7 SLTVVQLKDLLTKR-NLSV 24 (51)
T ss_dssp GCCHHHHHHHHHHT-TCCC
T ss_pred HCcHHHHHHHHHHc-CCCC
Confidence 57999999987664 5664
No 296
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=21.91 E-value=1.1e+02 Score=16.99 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=29.6
Q ss_pred HhhhCCCCCCeEEEeCCEEcCCCCcccccc-c-cCCcEEEEEEee
Q 033059 31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYN-I-QKESTLHLVLRL 73 (128)
Q Consensus 31 ~~~~~ip~~~q~L~~~g~~L~d~~~L~~~g-i-~~g~~i~v~~~~ 73 (128)
++..|+.+.++.+-.+|..+.+...+.... + ..+..+.+.+.-
T Consensus 47 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 91 (97)
T 2w4f_A 47 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 91 (97)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEe
Confidence 445688899999999999987644332221 1 468888887754
No 297
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.88 E-value=40 Score=18.85 Aligned_cols=24 Identities=46% Similarity=1.079 Sum_probs=17.0
Q ss_pred chhhhhhhhccc---CCcccccccccCCC
Q 033059 92 DKMICRKCYARL---HPRAVNCRKKKCGH 117 (128)
Q Consensus 92 ~k~~Cr~c~~r~---~~~~~~c~~~~c~~ 117 (128)
-...|.+|...+ ..++..|.. ||+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~--CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKD--CGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSS--SCC
T ss_pred EEEECCCCCCcceeCCCCCccCCC--CCc
Confidence 344799999773 345688986 985
No 298
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.80 E-value=68 Score=17.00 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhhCCCC
Q 033059 19 SSDTIDNVKAKIQDKEGIPP 38 (128)
Q Consensus 19 ~~~tV~~LK~~i~~~~~ip~ 38 (128)
...||.+||+.+.. .|++.
T Consensus 11 ~klkV~eLK~~L~~-rGL~~ 29 (55)
T 2do1_A 11 HKLKLAELKQECLA-RGLET 29 (55)
T ss_dssp TTSCHHHHHHHHHH-HTCCC
T ss_pred HHCcHHHHHHHHHH-cCCCC
Confidence 36899999997765 46664
No 299
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=21.78 E-value=1.2e+02 Score=17.38 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...++ ...+++++..||.+.-
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~ 28 (98)
T 1iue_A 4 NITLRTNDG-EKKIECNEDEYILDAS 28 (98)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHH
T ss_pred EEEEEeCCC-eEEEEeCCCCcHHHHH
Confidence 345544344 6788999999987754
No 300
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=21.58 E-value=62 Score=18.94 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=11.9
Q ss_pred hhCCCCCCeEEEeCCEEcCC
Q 033059 33 KEGIPPDQQRLIFAGKQLED 52 (128)
Q Consensus 33 ~~~ip~~~q~L~~~g~~L~d 52 (128)
..|+.+.+..+-.+|..+.+
T Consensus 50 ~aGl~~GD~I~~ing~~v~~ 69 (113)
T 2pzd_A 50 RAGLRPGDVILAIGEQMVQN 69 (113)
T ss_dssp HHTCCTTCEEEEETTEECCS
T ss_pred HcCCCCCCEEEEECCEECCC
Confidence 34566666666666666643
No 301
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=21.36 E-value=29 Score=20.79 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.7
Q ss_pred CCcHHHHHHHHHhhhCCCCCCe
Q 033059 20 SDTIDNVKAKIQDKEGIPPDQQ 41 (128)
Q Consensus 20 ~~tV~~LK~~i~~~~~ip~~~q 41 (128)
..|+.++.+.+++.++++++++
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl 25 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEEL 25 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHH
Confidence 5689999999999999998774
No 302
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=21.31 E-value=55 Score=19.12 Aligned_cols=26 Identities=4% Similarity=0.160 Sum_probs=19.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK 27 (128)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa 27 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVA 27 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 56775567877889999888886643
No 303
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=21.18 E-value=1.2e+02 Score=16.93 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=34.5
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEE
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~ 70 (128)
.+.|...+|+...+.-. ..|+.++-..|..... ..-+-...+|+..+-...| .+++.|.++
T Consensus 11 ~i~I~lpdG~~~~~~~~-~~T~~dia~~i~~~l~--~~~vaakvNg~l~dL~~~l-----~~d~~ve~v 71 (88)
T 1wwt_A 11 PIKVTLPDGKQVDAESW-KTTPYQIACGISQGLA--DNTVIAKVNNVVWDLDRPL-----EEDCTLELL 71 (88)
T ss_dssp EEEEECTTSCEEEEETT-TCCHHHHHHHSSTTTG--GGCCCEEESSSEECSSSCC-----CSSEEEEEC
T ss_pred CEEEEECCCCEEEcccC-CCCHHHHHHHhhhccc--cceEEEEECCEEECCCcCc-----CCCCEEEEE
Confidence 35666667776544421 4889998777744322 2222234688766544444 456676654
No 304
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=21.10 E-value=90 Score=19.38 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhCCCCCCeEEEeCCE
Q 033059 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (128)
Q Consensus 23 V~~LK~~i~~~~~ip~~~q~L~~~g~ 48 (128)
...|-+.+++..|+|++++-+.|..-
T Consensus 98 s~~i~~~l~~~Lgi~~~riyI~f~d~ 123 (135)
T 3t5s_A 98 SAAITGCLTQHFKVKPERVYISFNEA 123 (135)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHHHhcccCccEEEEEeccc
Confidence 56677778889999999998877543
No 305
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.01 E-value=64 Score=18.36 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhhhCCCC
Q 033059 19 SSDTIDNVKAKIQDKEGIPP 38 (128)
Q Consensus 19 ~~~tV~~LK~~i~~~~~ip~ 38 (128)
...||.+||+.+..+ |++.
T Consensus 27 ~klkVaeLK~eLk~R-GL~~ 45 (75)
T 2kvu_A 27 DDMKVAELKQELKLR-SLPV 45 (75)
T ss_dssp TTSCHHHHHHHHHHT-TCCC
T ss_pred HHCcHHHHHHHHHHc-CCCC
Confidence 368999999988664 5664
No 306
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.69 E-value=1.1e+02 Score=16.41 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=12.7
Q ss_pred HHHHHHHhhhCCCCCCeEEE
Q 033059 25 NVKAKIQDKEGIPPDQQRLI 44 (128)
Q Consensus 25 ~LK~~i~~~~~ip~~~q~L~ 44 (128)
.|-+.+.+.+|+|+++..++
T Consensus 23 ~it~~l~~~lg~p~~~v~V~ 42 (72)
T 3mb2_A 23 ALSAAAAAAFDVPLAEVRLI 42 (72)
T ss_dssp HHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHhCCCcccEEEE
Confidence 33344456678998887554
No 307
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=20.67 E-value=1.2e+02 Score=16.61 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEee
Q 033059 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
Q Consensus 20 ~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~ 73 (128)
..+...|++.+++..++++.. .-..+.++..|.++|+.+-..+.++..+
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~-----~~~~i~~~~~l~dlG~DSL~~vel~~~l 52 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGT-----DLSGDFLDLRFEDIGYDSLALMETAARL 52 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCC-----CTTTCSSTTSTTTTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccc-----ccccCCCCCChhhcCCCHHHHHHHHHHH
Confidence 567889999999999987641 0002345556777877665555554443
No 308
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=20.50 E-value=1.2e+02 Score=17.72 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHhhhC-CCCCCeEEEeCCEEcCCCCccccc---cccCCcEEEEEEee
Q 033059 30 IQDKEG-IPPDQQRLIFAGKQLEDGRTLADY---NIQKESTLHLVLRL 73 (128)
Q Consensus 30 i~~~~~-ip~~~q~L~~~g~~L~d~~~L~~~---gi~~g~~i~v~~~~ 73 (128)
-+++.| +.+.++.+-.+|..+....+..+. --..+..|.+.+.-
T Consensus 61 pA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R 108 (117)
T 2o2t_A 61 VAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR 108 (117)
T ss_dssp HHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence 345567 888898888999988622222221 11357788777653
No 309
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=20.49 E-value=1.9e+02 Score=23.68 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEEEEeec
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v~~~~~ 74 (128)
+++|+..+|+++.|....... .+ .--|.+..+|+.++.. -|..-.|.+|.+|.+.+...
T Consensus 659 ~v~i~l~~Gk~~~I~a~~~s~-----------~n--~YIqs~~lNGk~~~~~-~i~h~~i~~GG~L~f~mg~~ 717 (744)
T 2wvx_A 659 KATLHFENGNSLVIDAPNNST-----------EN--FYIDSMSFNGADHTKN-YLRHEDLFKGGTIKVDMSNR 717 (744)
T ss_dssp EEEEECTTSCEEEEECTTCCS-----------SC--CEEEEEEETTEECCCS-EEEHHHHHHCEEEEEEEESS
T ss_pred eEEEECCCCCEEEEEecCCCC-----------CC--ceEEEEEECCEECcCc-eecHHHHcCCCEEEEEeCCC
Confidence 477877788988888765431 11 2246777899999644 46666689999999887643
No 310
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.48 E-value=1.3e+02 Score=16.94 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=15.9
Q ss_pred HHhhhCCCCCCeEEEeCCEEcCC
Q 033059 30 IQDKEGIPPDQQRLIFAGKQLED 52 (128)
Q Consensus 30 i~~~~~ip~~~q~L~~~g~~L~d 52 (128)
..+..|.||++..+++.--.=++
T Consensus 29 f~evLGcpPgsV~IVi~EV~~en 51 (72)
T 3mb2_B 29 FQRVIGTPPGRLQLIIQIVSPEN 51 (72)
T ss_dssp HHHHHCCCTTCCEEEEEECCGGG
T ss_pred HHHHhCCCCCcEEEEEEecCccc
Confidence 34556899999999986543333
No 311
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=20.47 E-value=1.4e+02 Score=25.65 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=42.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHhhhC-C-------CCCCeEEEe---CCE--Ec-CCCCccccccccCCcEEE
Q 033059 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-I-------PPDQQRLIF---AGK--QL-EDGRTLADYNIQKESTLH 68 (128)
Q Consensus 3 i~vk~~~g~~~~i~v~~~~tV~~LK~~i~~~~~-i-------p~~~q~L~~---~g~--~L-~d~~~L~~~gi~~g~~i~ 68 (128)
|.+=.++|-.+.++++.+.|+.++|+++..+.. . +++.-.+.+ .|. .+ +++..|.++..- -..+.
T Consensus 45 vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~-~~~l~ 123 (1091)
T 3hhm_A 45 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 123 (1091)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS-SSEEE
T ss_pred EEEEcCCCeEEEEEecCCCcHHHHHHHHHHHHHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeecc-ceeEE
Confidence 334456888899999999999999999966542 2 344444443 122 45 445567666543 23444
Q ss_pred EEEe
Q 033059 69 LVLR 72 (128)
Q Consensus 69 v~~~ 72 (128)
++.+
T Consensus 124 lve~ 127 (1091)
T 3hhm_A 124 VIEP 127 (1091)
T ss_dssp EECC
T ss_pred EEec
Confidence 4433
No 312
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.36 E-value=1.3e+02 Score=17.01 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 033059 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (128)
Q Consensus 2 ~i~vk~~~g~~~~i~v~~~~tV~~LK~~ 29 (128)
+|++...+| ...+++++..|+.+.-..
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~ 29 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSE 29 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHH
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHH
Confidence 466665554 678999999998876543
No 313
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=20.17 E-value=1e+02 Score=18.02 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHhhhCCCCCCeEEEeCCEEcCCCCccccccccCCcEEEE
Q 033059 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (128)
Q Consensus 21 ~tV~~LK~~i~~~~~ip~~~q~L~~~g~~L~d~~~L~~~gi~~g~~i~v 69 (128)
.....|++.|++.++++++. +.++..|.++|+.+-+.+.+
T Consensus 17 ~i~~~l~~ila~~l~v~~~~---------I~~d~~L~dLGlDSL~~veL 56 (100)
T 1vku_A 17 KLIAKFVEIASEKMGKDLET---------VDEENTFKELGFDSIDVIDL 56 (100)
T ss_dssp HHHHHHHHHHHHTTCCCCCS---------CCTTSBTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHH---------CCCCCCHHHcCCchHHHHHH
Confidence 34677888899988887653 55666777777754444433
No 314
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=20.07 E-value=43 Score=15.80 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=17.7
Q ss_pred hhhhhhcccCCcccccccccCC
Q 033059 95 ICRKCYARLHPRAVNCRKKKCG 116 (128)
Q Consensus 95 ~Cr~c~~r~~~~~~~c~~~~c~ 116 (128)
.|-.|+.+|.+.+.+|.- |.
T Consensus 9 ~C~~C~~~N~~~~~kC~a--C~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVA--CE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTT--TC
T ss_pred eCCcccCCCccccCEEcc--cC
Confidence 589999999999999986 75
No 315
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.04 E-value=45 Score=19.32 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=20.3
Q ss_pred hhhhhhcccCCcccccc--cccCCCCCCCcccCcC
Q 033059 95 ICRKCYARLHPRAVNCR--KKKCGHSNQLRPKKKI 127 (128)
Q Consensus 95 ~Cr~c~~r~~~~~~~c~--~~~c~~~~~~~~~~~~ 127 (128)
-|.+|...+-. +..|. ..||.+-+.|=+||++
T Consensus 33 fCPeCgq~Le~-lkACGA~~yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 33 LCPDCRQPLQV-LKACGAVDYFCQNGHGLISKKRV 66 (81)
T ss_dssp ECSSSCSCCCE-EEETTEEEECCTTTTCCCCTTSS
T ss_pred cCcchhhHHHH-HHhcCCcCeeeccCCCEeecceE
Confidence 46666655533 22332 4578888899998875
Done!