Query 033060
Match_columns 128
No_of_seqs 109 out of 330
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:12:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 95.3 0.025 8.6E-07 42.2 5.1 108 9-121 8-118 (145)
2 3ga3_A Interferon-induced heli 94.6 0.017 5.9E-07 42.6 2.5 87 13-103 11-99 (133)
3 3lrr_A Probable ATP-dependent 93.9 0.042 1.4E-06 39.8 3.2 89 11-103 2-94 (121)
4 3e0o_A Peptide methionine sulf 93.4 0.04 1.4E-06 41.2 2.5 67 12-86 40-106 (144)
5 3hcg_A Peptide methionine sulf 93.3 0.041 1.4E-06 41.2 2.4 68 12-86 41-108 (146)
6 2qfd_A Probable ATP-dependent 93.0 0.095 3.3E-06 39.1 4.0 79 13-103 26-116 (145)
7 4a2v_A RIG-I, retinoic acid in 92.5 0.083 2.8E-06 38.8 3.0 88 12-103 5-97 (131)
8 3cxk_A Methionine-R-sulfoxide 92.2 0.058 2E-06 41.1 1.9 67 12-85 71-137 (164)
9 2kv1_A Methionine-R-sulfoxide 91.8 0.084 2.9E-06 38.5 2.3 64 13-84 19-82 (124)
10 2k8d_A Peptide methionine sulf 91.6 0.056 1.9E-06 40.7 1.2 67 13-86 60-126 (151)
11 3mao_A Methionine-R-sulfoxide 91.3 0.054 1.9E-06 38.5 0.9 65 12-84 11-75 (105)
12 2kao_A Methionine-R-sulfoxide 91.3 0.11 3.6E-06 38.0 2.4 65 12-84 18-82 (124)
13 3hcj_A MSRB, peptide methionin 89.0 0.073 2.5E-06 40.2 -0.1 87 12-109 48-134 (154)
14 2l1u_A MSRB2, methionine-R-sul 86.6 0.17 6E-06 37.6 0.7 86 12-109 35-128 (143)
15 3e0m_A Peptide methionine sulf 86.2 0.33 1.1E-05 40.2 2.2 67 12-85 207-273 (313)
16 4gl2_A Interferon-induced heli 74.9 1.2 3.9E-05 38.0 1.7 91 8-103 580-673 (699)
17 4a2w_A RIG-I, retinoic acid in 52.3 3 0.0001 37.9 0.0 87 13-103 811-902 (936)
18 1fv5_A First zinc finger of U- 49.2 1.7 6E-05 24.2 -1.3 24 9-32 3-26 (36)
19 2ykg_A Probable ATP-dependent 48.6 6.8 0.00023 33.2 1.6 102 13-122 577-686 (696)
20 2lvu_A Zinc finger and BTB dom 49.9 4.8 0.00016 18.7 0.0 19 13-31 1-19 (26)
21 2elm_A Zinc finger protein 406 43.2 4.5 0.00015 20.8 -0.2 20 11-30 6-25 (37)
22 1x6m_A GFA, glutathione-depend 43.0 40 0.0014 25.0 5.0 19 67-85 95-113 (196)
23 1srk_A Zinc finger protein ZFP 39.4 4.9 0.00017 20.0 -0.4 21 11-31 4-24 (35)
24 2m0e_A Zinc finger and BTB dom 39.2 6.8 0.00023 18.1 0.1 18 14-31 2-19 (29)
25 2kvh_A Zinc finger and BTB dom 39.0 4.4 0.00015 19.0 -0.6 18 13-30 2-19 (27)
26 2lvr_A Zinc finger and BTB dom 43.0 7.3 0.00025 18.3 0.0 19 13-31 2-20 (30)
27 2elx_A Zinc finger protein 406 36.6 5.4 0.00018 19.7 -0.6 21 11-31 4-24 (35)
28 2elp_A Zinc finger protein 406 35.9 8.5 0.00029 19.4 0.2 20 11-30 6-26 (37)
29 1rik_A E6APC1 peptide; E6-bind 35.3 7.6 0.00026 18.1 -0.1 17 14-30 2-18 (29)
30 2elq_A Zinc finger protein 406 35.1 6.1 0.00021 19.9 -0.5 20 11-30 6-25 (36)
31 2elv_A Zinc finger protein 406 35.0 6.4 0.00022 19.8 -0.4 20 11-30 6-25 (36)
32 2kvf_A Zinc finger and BTB dom 34.1 5.5 0.00019 18.7 -0.7 18 13-30 2-19 (28)
33 2lvt_A Zinc finger and BTB dom 39.2 9.1 0.00031 18.0 0.0 18 14-31 2-19 (29)
34 2m0d_A Zinc finger and BTB dom 32.9 6.2 0.00021 18.4 -0.7 18 13-30 2-19 (30)
35 1nyp_A Pinch protein; LIM doma 32.5 15 0.00051 21.8 0.9 13 14-26 31-43 (66)
36 2els_A Zinc finger protein 406 32.1 7.4 0.00025 19.5 -0.5 20 11-30 6-25 (36)
37 2yu5_A Zinc finger protein 473 32.1 10 0.00035 20.0 0.1 22 10-31 8-29 (44)
38 1p7a_A BF3, BKLF, kruppel-like 32.1 5.6 0.00019 20.1 -1.0 20 11-30 8-27 (37)
39 2elt_A Zinc finger protein 406 32.1 7.1 0.00024 19.4 -0.5 20 11-30 6-25 (36)
40 2epc_A Zinc finger protein 32; 31.8 7.9 0.00027 20.1 -0.4 21 11-31 8-28 (42)
41 2iyb_E Testin, TESS, TES; LIM 31.5 13 0.00045 22.3 0.6 13 13-25 31-43 (65)
42 3fac_A Putative uncharacterize 31.3 32 0.0011 23.2 2.6 18 67-84 64-81 (118)
43 2elo_A Zinc finger protein 406 30.3 5.6 0.00019 20.1 -1.2 21 11-31 6-26 (37)
44 1klr_A Zinc finger Y-chromosom 30.0 8.2 0.00028 17.9 -0.5 18 14-31 2-19 (30)
45 1njq_A Superman protein; zinc- 30.0 7.8 0.00027 20.0 -0.6 21 11-31 3-23 (39)
46 1x61_A Thyroid receptor intera 29.8 21 0.0007 21.5 1.3 12 14-25 33-44 (72)
47 2en2_A B-cell lymphoma 6 prote 29.8 8.1 0.00028 20.1 -0.6 22 10-31 7-28 (42)
48 1iz6_A Initiation factor 5A; S 29.6 38 0.0013 24.1 2.9 32 35-66 34-65 (138)
49 2eoy_A Zinc finger protein 473 28.6 13 0.00045 19.8 0.2 21 11-31 9-29 (46)
50 2kvg_A Zinc finger and BTB dom 27.9 5.9 0.0002 18.7 -1.3 17 13-29 2-18 (27)
51 2elr_A Zinc finger protein 406 27.8 7.3 0.00025 19.4 -1.0 21 11-31 6-26 (36)
52 1paa_A Yeast transcription fac 27.4 8.2 0.00028 18.2 -0.8 17 14-30 2-18 (30)
53 2eif_A IF-5A, protein (eukaryo 27.4 46 0.0016 23.6 2.9 30 36-65 39-68 (136)
54 2ely_A Zinc finger protein 224 26.9 16 0.00056 19.3 0.4 22 11-32 9-30 (46)
55 2yu8_A Zinc finger protein 347 26.6 14 0.00048 19.6 0.0 22 10-31 8-29 (46)
56 2en3_A ZFP-95, zinc finger pro 26.6 14 0.00048 19.6 0.0 21 11-31 9-29 (46)
57 2el5_A Zinc finger protein 268 26.6 10 0.00035 19.6 -0.5 22 10-31 6-27 (42)
58 2yte_A Zinc finger protein 473 26.6 8.2 0.00028 20.0 -0.9 21 11-31 7-27 (42)
59 2d8z_A Four and A half LIM dom 26.4 23 0.00078 21.2 1.0 12 14-25 31-42 (70)
60 2m0f_A Zinc finger and BTB dom 26.3 9 0.00031 17.7 -0.8 17 14-30 2-18 (29)
61 3iuf_A Zinc finger protein UBI 26.3 11 0.00036 20.8 -0.5 21 11-31 4-24 (48)
62 2ept_A Zinc finger protein 32; 26.2 11 0.00038 19.5 -0.4 21 11-31 7-27 (41)
63 1x4l_A Skeletal muscle LIM-pro 26.1 27 0.00091 21.0 1.3 13 13-25 34-46 (72)
64 2epw_A Zinc finger protein 268 26.0 15 0.0005 19.4 0.0 23 10-32 8-30 (46)
65 2eos_A B-cell lymphoma 6 prote 26.0 9.6 0.00033 19.8 -0.7 21 11-31 8-28 (42)
66 2egq_A FHL1 protein; LIM domai 25.7 18 0.00062 22.1 0.5 11 15-25 47-57 (77)
67 2epv_A Zinc finger protein 268 25.2 11 0.00038 19.9 -0.6 21 11-31 9-29 (44)
68 2eox_A Zinc finger protein 473 25.2 13 0.00046 19.5 -0.2 21 11-31 9-29 (44)
69 2yts_A Zinc finger protein 484 24.7 12 0.0004 19.8 -0.5 22 10-31 8-29 (46)
70 2ytf_A Zinc finger protein 268 24.6 12 0.0004 19.8 -0.6 22 10-31 8-29 (46)
71 2eow_A Zinc finger protein 347 24.5 12 0.00042 19.7 -0.5 22 10-31 8-29 (46)
72 1a7i_A QCRP2 (LIM1); LIM domai 24.3 36 0.0012 20.9 1.7 14 14-27 34-47 (81)
73 2eor_A Zinc finger protein 224 24.3 12 0.0004 19.9 -0.6 21 11-31 9-29 (46)
74 2eof_A Zinc finger protein 268 24.2 12 0.00041 19.5 -0.6 22 10-31 8-29 (44)
75 1vd4_A Transcription initiatio 24.2 35 0.0012 19.6 1.5 13 12-24 12-24 (62)
76 1x68_A FHL5 protein; four-and- 24.1 25 0.00086 21.5 0.9 13 13-25 34-46 (76)
77 2cur_A Skeletal muscle LIM-pro 24.0 25 0.00085 21.0 0.9 12 14-25 31-42 (69)
78 2ytg_A ZFP-95, zinc finger pro 23.9 17 0.00057 19.2 0.0 23 10-32 8-30 (46)
79 2emj_A Zinc finger protein 28 23.8 12 0.00043 19.9 -0.5 21 11-31 9-29 (46)
80 1bkb_A Translation initiation 23.6 57 0.002 23.0 2.9 31 36-66 37-67 (136)
81 2emb_A Zinc finger protein 473 23.6 12 0.00042 19.6 -0.6 22 10-31 8-29 (44)
82 2yto_A Zinc finger protein 484 23.4 14 0.00047 19.7 -0.4 21 11-31 9-29 (46)
83 2emi_A Zinc finger protein 484 23.3 14 0.00048 19.6 -0.4 22 10-31 8-29 (46)
84 2eoo_A ZFP-95, zinc finger pro 23.3 14 0.00047 19.7 -0.4 22 10-31 8-29 (46)
85 2ytp_A Zinc finger protein 484 23.3 14 0.00047 19.7 -0.4 21 11-31 9-29 (46)
86 3cpf_A Eukaryotic translation 23.2 48 0.0016 23.6 2.4 31 35-65 34-64 (138)
87 2emx_A Zinc finger protein 268 23.1 14 0.00049 19.3 -0.4 22 10-31 6-27 (44)
88 2yrj_A Zinc finger protein 473 23.0 14 0.00048 19.5 -0.4 21 11-31 9-29 (46)
89 2em4_A Zinc finger protein 28 22.7 13 0.00046 19.7 -0.6 21 11-31 9-29 (46)
90 2ep3_A Zinc finger protein 484 22.7 14 0.00046 19.6 -0.5 22 10-31 8-29 (46)
91 1wyh_A SLIM 2, skeletal muscle 22.6 34 0.0012 20.4 1.3 13 14-26 33-45 (72)
92 2enf_A Zinc finger protein 347 22.6 11 0.00038 20.0 -0.9 22 10-31 8-29 (46)
93 2ema_A Zinc finger protein 347 22.5 14 0.00049 19.5 -0.4 22 10-31 8-29 (46)
94 2ytb_A Zinc finger protein 32; 22.5 11 0.00038 19.5 -0.9 22 10-31 7-28 (42)
95 2yrm_A B-cell lymphoma 6 prote 22.3 13 0.00043 19.7 -0.7 21 11-31 7-27 (43)
96 2ehe_A Four and A half LIM dom 22.2 26 0.00089 21.6 0.7 16 16-31 17-32 (82)
97 3uk3_C Zinc finger protein 217 22.1 11 0.00038 20.8 -1.0 20 12-31 2-21 (57)
98 2eml_A Zinc finger protein 28 22.1 14 0.00049 19.5 -0.5 22 10-31 8-29 (46)
99 2em2_A Zinc finger protein 28 22.1 14 0.00048 19.6 -0.6 21 11-31 9-29 (46)
100 2ctu_A Zinc finger protein 483 22.0 48 0.0016 18.7 1.9 22 11-32 15-36 (73)
101 2ep2_A Zinc finger protein 484 21.9 14 0.00049 19.5 -0.5 23 10-32 8-30 (46)
102 2ytk_A Zinc finger protein 347 21.9 15 0.0005 19.5 -0.5 22 10-31 8-29 (46)
103 2em3_A Zinc finger protein 28 21.9 15 0.0005 19.5 -0.5 22 10-31 8-29 (46)
104 2eq0_A Zinc finger protein 347 21.9 15 0.0005 19.5 -0.5 22 10-31 8-29 (46)
105 2emf_A Zinc finger protein 484 21.8 16 0.00055 19.4 -0.3 22 10-31 8-29 (46)
106 2enh_A Zinc finger protein 28 21.7 16 0.00055 19.4 -0.4 22 11-32 9-30 (46)
107 1ard_A Yeast transcription fac 21.7 9.8 0.00033 17.6 -1.2 17 14-30 2-18 (29)
108 2yth_A Zinc finger protein 224 21.7 12 0.00041 19.9 -0.9 23 10-32 8-30 (46)
109 3er0_A Eukaryotic translation 21.7 70 0.0024 23.7 3.1 31 35-65 58-88 (167)
110 2emm_A ZFP-95, zinc finger pro 21.7 15 0.0005 19.4 -0.5 22 10-31 8-29 (46)
111 2el4_A Zinc finger protein 268 21.6 15 0.0005 19.4 -0.5 22 10-31 8-29 (46)
112 2ytj_A Zinc finger protein 484 21.4 15 0.00051 19.4 -0.5 22 10-31 8-29 (46)
113 2emp_A Zinc finger protein 347 21.3 15 0.00052 19.4 -0.5 22 10-31 8-29 (46)
114 4ayb_P DNA-directed RNA polyme 21.3 38 0.0013 20.7 1.3 17 13-29 2-18 (48)
115 2yso_A ZFP-95, zinc finger pro 21.3 15 0.00053 19.4 -0.5 22 10-31 8-29 (46)
116 2ene_A Zinc finger protein 347 21.3 15 0.00051 19.5 -0.6 22 10-31 8-29 (46)
117 2eon_A ZFP-95, zinc finger pro 21.2 13 0.00044 19.9 -0.9 21 11-31 9-29 (46)
118 4gzn_C ZFP-57, zinc finger pro 21.2 15 0.00051 22.1 -0.6 21 12-32 2-22 (60)
119 2eme_A Zinc finger protein 473 21.1 15 0.00051 19.4 -0.6 22 10-31 8-29 (46)
120 2enc_A Zinc finger protein 224 21.0 15 0.00052 19.4 -0.6 21 11-31 9-29 (46)
121 2emg_A Zinc finger protein 484 20.9 12 0.00043 19.8 -0.9 22 10-31 8-29 (46)
122 2em7_A Zinc finger protein 224 20.9 16 0.00054 19.3 -0.5 21 11-31 9-29 (46)
123 2em9_A Zinc finger protein 224 20.9 15 0.00052 19.3 -0.6 21 11-31 9-29 (46)
124 2em6_A Zinc finger protein 224 20.8 14 0.00047 19.7 -0.8 21 11-31 9-29 (46)
125 2eq4_A Zinc finger protein 224 20.7 13 0.00046 19.6 -0.8 22 10-31 8-29 (46)
126 2emy_A Zinc finger protein 268 20.7 17 0.00058 19.2 -0.4 22 10-31 8-29 (46)
127 2emh_A Zinc finger protein 484 20.7 15 0.00052 19.4 -0.6 22 10-31 8-29 (46)
128 1yui_A GAGA-factor; complex (D 20.7 16 0.00056 20.3 -0.5 21 11-31 21-41 (54)
129 2em5_A ZFP-95, zinc finger pro 20.6 16 0.00054 19.4 -0.6 22 10-31 8-29 (46)
130 2el6_A Zinc finger protein 268 20.5 16 0.00054 19.4 -0.5 21 11-31 9-29 (46)
131 2eod_A TNF receptor-associated 20.5 38 0.0013 19.4 1.2 20 11-30 33-53 (66)
132 2drp_A Protein (tramtrack DNA- 20.5 15 0.00052 20.9 -0.7 22 11-32 7-28 (66)
133 1ogy_B Diheme cytochrome C NAP 20.4 37 0.0013 24.6 1.3 29 12-40 93-121 (130)
134 2en9_A Zinc finger protein 28 20.2 14 0.00049 19.6 -0.8 21 11-31 9-29 (46)
135 2ytn_A Zinc finger protein 347 20.1 13 0.00045 19.7 -0.9 22 10-31 8-29 (46)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=95.32 E-value=0.025 Score=42.23 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=64.1
Q ss_pred cCCccEEeccCCCCcccCCCCeeeecc--ccCCCeEEEeeccccccCCccc-ceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060 9 LKGRSYYKCRFCNSHLALADSVLSWSF--NCRRGRAYLFSDVVNIMLGPQE-ERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (128)
Q Consensus 9 l~g~~~y~C~~C~thLa~~~~lISk~F--~G~~G~AyLf~~v~Nv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (128)
.++.-.+-|++|.+.++..+||-.-.- +=--+++ |...+.+..+|.. .+. ..+..+-..|.|.+|++.+|-...
T Consensus 8 ~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m~ 84 (145)
T 3eqt_A 8 PVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQMI 84 (145)
T ss_dssp CGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEEE
T ss_pred CchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhEE
Confidence 344457999999999999999754311 0000011 1122222212211 111 344567788999999999998776
Q ss_pred EeccCCcceeCCeEEEEeeceeeeccccccccccCC
Q 033060 86 AAHDKNQKYKEGKFVLERWRIVEEVTEELSLETHTH 121 (128)
Q Consensus 86 ~A~e~sqkYKEGkfILE~~~i~~~~g~~~~~~~~~~ 121 (128)
.---+=.-.|.-.|+||...-... -..|-+-+-.
T Consensus 85 yk~~~LP~LkIksFVve~~~g~~~--~kKWk~vpf~ 118 (145)
T 3eqt_A 85 YKSVKLPVLKVRSMLLETPQGRIQ--AKKWSRVPFS 118 (145)
T ss_dssp ETTEEEEEECGGGEEEEETTEEEC--CSCGGGCSSC
T ss_pred eccccCceEeEEEEEEEcCCCcEe--ccccccCccc
Confidence 555556778889999876444332 3456655443
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=94.60 E-value=0.017 Score=42.56 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=55.2
Q ss_pred cEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccC
Q 033060 13 SYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDK 90 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~ 90 (128)
-.+-|++|.+.++..+||-.-. -+=--+++ |...+.+..-+...+. ..+..+-..|.|. |++.+|-....---+
T Consensus 11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~ 86 (133)
T 3ga3_A 11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLD 86 (133)
T ss_dssp EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEE
T ss_pred EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEecccc
Confidence 4699999999999999975431 11011111 1233333322222233 4667788999999 999999876654444
Q ss_pred CcceeCCeEEEEe
Q 033060 91 NQKYKEGKFVLER 103 (128)
Q Consensus 91 sqkYKEGkfILE~ 103 (128)
=.-.|.-.|+||.
T Consensus 87 LP~LkIksFVve~ 99 (133)
T 3ga3_A 87 LPCLKIRNFVVVF 99 (133)
T ss_dssp EEEECGGGEEEEE
T ss_pred CceEEEEEEEEEc
Confidence 6677888888774
No 3
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=93.89 E-value=0.042 Score=39.79 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=56.1
Q ss_pred CccEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEE
Q 033060 11 GRSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVA 86 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~ 86 (128)
++..+-|++|.+.++..+||-.-. -+=--+++| ...+.+...+. .+. .-+.++-..|.|. +|++.+|-....
T Consensus 2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y 77 (121)
T 3lrr_A 2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY 77 (121)
T ss_dssp CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence 456799999999999999974321 110001111 12222322222 222 2456788899999 999999987765
Q ss_pred eccCCcceeCCeEEEEe
Q 033060 87 AHDKNQKYKEGKFVLER 103 (128)
Q Consensus 87 A~e~sqkYKEGkfILE~ 103 (128)
---+=.-.|.-.|+||.
T Consensus 78 k~~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 78 KTFEIPVIKIESFVVED 94 (121)
T ss_dssp TTEEEEEECGGGEEEEE
T ss_pred ccccCceEEEEEEEEEe
Confidence 54446777888888775
No 4
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=93.40 E-value=0.04 Score=41.18 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=42.5
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (128)
+-+|.|+.|.++|=.+++ .|....|=--.+..+-+ .+...+|+. -|+.. ..|.|..|+.+||--...
T Consensus 40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D 106 (144)
T 3e0o_A 40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND 106 (144)
T ss_dssp SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence 358999999999877654 45555554333444433 333333432 24433 469999999999986543
No 5
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=93.30 E-value=0.041 Score=41.16 Aligned_cols=68 Identities=7% Similarity=0.078 Sum_probs=41.0
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (128)
+-+|.|+.|.++|=.+++ .|....|=--.+..+-.-.+...+|+. -|+. =..|.|+.|+.+||--...
T Consensus 41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D 108 (146)
T 3hcg_A 41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD 108 (146)
T ss_dssp SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence 458999999999876653 455555543333333211122223332 2443 3578999999999975543
No 6
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=93.00 E-value=0.095 Score=39.08 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=53.1
Q ss_pred cEEeccCCCCcccCCCCe----------eeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCee
Q 033060 13 SYYKCRFCNSHLALADSV----------LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIV 80 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~l----------ISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~l 80 (128)
-.+.|++|.+.+++.+|| +.+.|. ..+.+..-+.. + ..-+..+-..|+|. +|++.+
T Consensus 26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~-k-~f~d~~~~g~I~C~~~~Cg~~W 93 (145)
T 2qfd_A 26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKP-K-QFSSFEKRAKIFCARQNCSHDW 93 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSC-C-CCSSEEEEEEEEECSTTTCCEE
T ss_pred eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCccc-c-hhhceeCCceEEeCCcccCcch
Confidence 469999999999999998 444554 22222211111 1 14445678899999 999999
Q ss_pred eeEEEEeccCCcceeCCeEEEEe
Q 033060 81 GWKYVAAHDKNQKYKEGKFVLER 103 (128)
Q Consensus 81 GWkY~~A~e~sqkYKEGkfILE~ 103 (128)
|-....---+-.-.|.-.|+||.
T Consensus 94 G~~m~yk~~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 94 GIHVKYKTFEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEETTEEEEEECGGGEEEEC
T ss_pred hceEEEccccCceEEEEEEEEEe
Confidence 98765543446667788888864
No 7
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=92.49 E-value=0.083 Score=38.75 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=51.9
Q ss_pred ccEEeccCCCCcccCCCCeeeec--cccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEEe
Q 033060 12 RSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAA 87 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A 87 (128)
+..+-|++|.+.++..+||-.-. -+=--+++| ...+.+..-+. .+. .-..++-..|.|. +|++.+|-....-
T Consensus 5 ~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk 80 (131)
T 4a2v_A 5 QKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYL 80 (131)
T ss_dssp CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEET
T ss_pred ceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeec
Confidence 46799999999999999974321 100001110 12222211111 222 2355678889999 9999988766543
Q ss_pred ccC-CcceeCCeEEEEe
Q 033060 88 HDK-NQKYKEGKFVLER 103 (128)
Q Consensus 88 ~e~-sqkYKEGkfILE~ 103 (128)
--+ =.-.|.-.|+||.
T Consensus 81 ~~~~LP~LkIksFVve~ 97 (131)
T 4a2v_A 81 TFDNLPVIKIKSFVMES 97 (131)
T ss_dssp TEEEEEEECGGGEEECC
T ss_pred CcccCceEeEEEEEEEe
Confidence 222 4467778888764
No 8
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=92.23 E-value=0.058 Score=41.10 Aligned_cols=67 Identities=18% Similarity=0.430 Sum_probs=41.4
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (128)
+-+|.|+.|.++|=.+++ .|....|=.-.+..+-+-.+...+|.. -|+. -..|.|..|+.+||=-..
T Consensus 71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~ 137 (164)
T 3cxk_A 71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFE 137 (164)
T ss_dssp SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEES
T ss_pred CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccC
Confidence 358999999999877653 465555544434443221222233322 2442 457999999999998553
No 9
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=91.78 E-value=0.084 Score=38.54 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=37.8
Q ss_pred cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060 13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (128)
-+|.|+.|.++|=.+++= |....|=.-.+..+-.-.+-..+++ .++. ...|.|+.|+.+||=-.
T Consensus 19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 599999999999887653 5545554222333211111111221 2222 35799999999999743
No 10
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.60 E-value=0.056 Score=40.65 Aligned_cols=67 Identities=21% Similarity=0.482 Sum_probs=41.4
Q ss_pred cEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEE
Q 033060 13 SYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (128)
-+|.|+.|.++|=.+++ .|....|=--.+..+-.-.+...+|+. -|+. -..|.|..|+.+||--...
T Consensus 60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMV-RCEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSC-EEEEEETTEEEEEEEEEEC
T ss_pred EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCce-EEEEEeCCCCCcCCcccCC
Confidence 58999999999876653 465556643334443221222233332 2333 2468999999999986643
No 11
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=91.35 E-value=0.054 Score=38.50 Aligned_cols=65 Identities=15% Similarity=0.294 Sum_probs=38.7
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (128)
+-+|.|+.|.++|=.+++ .|....|=--.+..+-.-.+...++. .++ .-..|.|+.|+.+||--.
T Consensus 11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 459999999999876653 35555554333433321111111121 122 246899999999999755
No 12
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=91.31 E-value=0.11 Score=38.03 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=38.1
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (128)
+-+|.|+.|.++|=.+++ .|....|=.-.+..+-.-.+...+|.. + +.-..|.|+.|+.+||=-.
T Consensus 18 ~GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 18 PGVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CCEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred CEEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 359999999999988774 344444433323333211111112211 1 1236899999999999754
No 13
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=88.98 E-value=0.073 Score=40.16 Aligned_cols=87 Identities=17% Similarity=0.349 Sum_probs=47.2
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEEEeccCC
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKN 91 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~s 91 (128)
+-+|.|+.|.++|=.+++ .|....|=--.+..+-.-.+...+|.. -|+. =..|.|..|+.+||--......+
T Consensus 48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DGP~p- 119 (154)
T 3hcj_A 48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFPDGPPP- 119 (154)
T ss_dssp SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEESCSCTT-
T ss_pred CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccCCCCCC-
Confidence 358999999999876654 355444432223333111111122221 1333 24789999999999755433211
Q ss_pred cceeCCeEEEEeeceeee
Q 033060 92 QKYKEGKFVLERWRIVEE 109 (128)
Q Consensus 92 qkYKEGkfILE~~~i~~~ 109 (128)
.-=+|-|.-+-|.-.
T Consensus 120 ---tg~RyCiNS~sL~F~ 134 (154)
T 3hcj_A 120 ---TGERHCLNSVSLAFT 134 (154)
T ss_dssp ---TTCEEEECGGGEEEE
T ss_pred ---CCCEeeeceeeEEee
Confidence 112566665555543
No 14
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=86.63 E-value=0.17 Score=37.63 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=47.6
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeecccccc--------CCcccceeeeeccEEEeeeeeeecCCeeeeE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIM--------LGPQEERLMLSGMHTVEDIFCCCCGQIVGWK 83 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWk 83 (128)
+-+|.|+.|.++|=++++ .|....|=.- |.+.+++. +...+|+ .-|+. =..|.|+.|+.+||=-
T Consensus 35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~--s~gm~-RtEV~C~~Cg~HLGHV 106 (143)
T 2l1u_A 35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDT--SLGCP-RMEVVCKQCEAHLGHV 106 (143)
T ss_dssp CEEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEEC--TTSSC-EEEEEESSSCCCCEEE
T ss_pred CeEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeecc--cCCce-EEEEEECCCCCcCCcc
Confidence 358999999999876654 4554444322 23333211 1111222 11333 3469999999999986
Q ss_pred EEEeccCCcceeCCeEEEEeeceeee
Q 033060 84 YVAAHDKNQKYKEGKFVLERWRIVEE 109 (128)
Q Consensus 84 Y~~A~e~sqkYKEGkfILE~~~i~~~ 109 (128)
.... .+=+==+|-|.-+-|.-.
T Consensus 107 F~DG----P~ptg~RyCINS~sL~F~ 128 (143)
T 2l1u_A 107 FPDG----PKPTGQRFCINSVALKFK 128 (143)
T ss_dssp ECCS----SCGGGCEEEECCTTEEEE
T ss_pred cCCC----CCCCCCEEEeeeeEEecc
Confidence 5432 211222666666665554
No 15
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=86.18 E-value=0.33 Score=40.20 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=40.6
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeeeecCCeeeeEEE
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (128)
+-+|.|+.|.++|=+++ ..|....|=--.+..+-.-.+...+|++ -|+. =..|.|..|+.+||--..
T Consensus 207 ~G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~ 273 (313)
T 3e0m_A 207 EGIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFT 273 (313)
T ss_dssp SEEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEES
T ss_pred CeEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccC
Confidence 35899999999986664 3466555543333333211112223322 2443 357999999999997554
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=74.87 E-value=1.2 Score=37.95 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=45.7
Q ss_pred ccCCccEEeccCCCCcccCCCCeee-eccc-cCCCeEEEeeccccccCCcc-cceeeeeccEEEeeeeeeecCCeeeeEE
Q 033060 8 ELKGRSYYKCRFCNSHLALADSVLS-WSFN-CRRGRAYLFSDVVNIMLGPQ-EERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (128)
Q Consensus 8 yl~g~~~y~C~~C~thLa~~~~lIS-k~F~-G~~G~AyLf~~v~Nv~~g~~-e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (128)
|........|.+|.+.++..+||-. ++-+ =.-.++ |.....+. .+. ..+ ...+......|+|. |++.+|-.+
T Consensus 580 ~~~~~~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~c~-~~~~~g~~~ 654 (699)
T 4gl2_A 580 NNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQK-KCADYQINGEIICK-CGQAWGTMM 654 (699)
T ss_dssp --CCSEEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC-----------------CEEECS-SSCEEEEEC
T ss_pred cCcceeEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccch-hhhccccCCcEEee-cCchhhHHe
Confidence 4444446789999999999999743 1110 000011 11223222 221 122 24556677889999 999999866
Q ss_pred EEeccCCcceeCCeEEEEe
Q 033060 85 VAAHDKNQKYKEGKFVLER 103 (128)
Q Consensus 85 ~~A~e~sqkYKEGkfILE~ 103 (128)
..---+=.-.|.=.|++|.
T Consensus 655 ~~~~~~~p~~~~~~~~~~~ 673 (699)
T 4gl2_A 655 VHKGLDLPCLKIRNFVVVF 673 (699)
T ss_dssp CCC---CEEECGGGEEEEE
T ss_pred eEcccccceeEEEEEEEEc
Confidence 5444445666777788766
No 17
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.28 E-value=3 Score=37.86 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred cEEeccCCCCcccCCCCeeee--ccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEEe-
Q 033060 13 SYYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAA- 87 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A- 87 (128)
-.+.|++|...++..+||-.- +-+=.-+++| ...+++...+. .+. .-..+....|+|. +|+..+|-....-
T Consensus 811 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f--~~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 886 (936)
T 4a2w_A 811 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 886 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCCceeechhhheeecCCCeEecChhh--hhheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEecc
Confidence 358999999999999997322 2111112232 12223322222 222 3345567889999 9999998765332
Q ss_pred ccCCcceeCCeEEEEe
Q 033060 88 HDKNQKYKEGKFVLER 103 (128)
Q Consensus 88 ~e~sqkYKEGkfILE~ 103 (128)
.+.=.-.|.-.|++|.
T Consensus 887 ~~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 887 FDNLPVIKIKSFVMES 902 (936)
T ss_dssp ----------------
T ss_pred cccCceeeeeeEEEEe
Confidence 1213345666677765
No 18
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=49.22 E-value=1.7 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.294 Sum_probs=18.8
Q ss_pred cCCccEEeccCCCCcccCCCCeee
Q 033060 9 LKGRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 9 l~g~~~y~C~~C~thLa~~~~lIS 32 (128)
|.+++.|.|..|..-++..+.|..
T Consensus 3 ~~gekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 3 LLKPARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp SSSCCCCEETTTTEECSCHHHHHH
T ss_pred CCCccCeECCCCCCccCCHhHccC
Confidence 456789999999988887766543
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=48.61 E-value=6.8 Score=33.17 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred cEEeccCCCCcccCCCCe--eeeccccCCCeEEEeeccccccCCcccceeeeeccEEEeeeeee--ecCCeeeeEEEEec
Q 033060 13 SYYKCRFCNSHLALADSV--LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAH 88 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~ 88 (128)
....|.+|...++..++| +..+.+=.-.++ |...+.+.. ++..+. .........|+|. .|+..+|-.+..--
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 652 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRP-HPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 652 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEE-EEEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETT
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeecc-CCcccc-ccccccCCceEeCCCCCCccccceEEEcc
Confidence 457899999999999885 222211111122 111111111 111111 2345567888999 99999998875444
Q ss_pred cCCcceeCCeEEEEeeceeeecc----ccccccccCCC
Q 033060 89 DKNQKYKEGKFVLERWRIVEEVT----EELSLETHTHS 122 (128)
Q Consensus 89 e~sqkYKEGkfILE~~~i~~~~g----~~~~~~~~~~~ 122 (128)
-.=..+|...|++|. ..+| -.+|-+-+...
T Consensus 653 ~~lp~~~~~~~~~~~----~~~~~~~~~~~w~~~~~~~ 686 (696)
T 2ykg_A 653 FEIPVIKIESFVVED----IATGVQTLYSKWKDFHFEK 686 (696)
T ss_dssp EEEEEECGGGEEEEE----TTTCCEEECSCGGGCCSCC
T ss_pred eecceeeeeeEEEEe----cCCCcchhhhhhhcCCccc
Confidence 445666788888873 1245 34676555443
No 20
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=49.94 E-value=4.8 Score=18.68 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=14.3
Q ss_pred cEEeccCCCCcccCCCCee
Q 033060 13 SYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lI 31 (128)
+.|.|..|..-+...+.|.
T Consensus 1 kp~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 1 KPYVCERCGKRFVQSSQLA 19 (26)
Confidence 3588999998877766654
No 21
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.24 E-value=4.5 Score=20.84 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=15.0
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+++.|.|..|..-++..+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~L 25 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITKNCL 25 (37)
T ss_dssp SSCEEECSSSSCEEECHHHH
T ss_pred CCcCeECCCCCcccCCHHHH
Confidence 56889999998876665444
No 22
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=43.01 E-value=40 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.2
Q ss_pred EEeeeeeeecCCeeeeEEE
Q 033060 67 TVEDIFCCCCGQIVGWKYV 85 (128)
Q Consensus 67 ~V~DI~C~~C~~~lGWkY~ 85 (128)
.+.--||..|++.|-|..+
T Consensus 95 ~~~r~FC~~CGs~l~~~~~ 113 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIE 113 (196)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeeeEECCCCCCcCCcccc
Confidence 3666799999999987654
No 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=39.42 E-value=4.9 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=15.6
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 4 ~~k~~~C~~C~k~f~~~~~l~ 24 (35)
T 1srk_A 4 GKRPFVCRICLSAFTTKANCA 24 (35)
T ss_dssp CCSCEECSSSCCEESSHHHHH
T ss_pred CCcCeeCCCCCcccCCHHHHH
Confidence 457899999988777655543
No 24
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.18 E-value=6.8 Score=18.10 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.7
Q ss_pred EEeccCCCCcccCCCCee
Q 033060 14 YYKCRFCNSHLALADSVL 31 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~lI 31 (128)
.|.|..|...+.....|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 588999998877766654
No 25
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.99 E-value=4.4 Score=19.02 Aligned_cols=18 Identities=11% Similarity=0.392 Sum_probs=13.1
Q ss_pred cEEeccCCCCcccCCCCe
Q 033060 13 SYYKCRFCNSHLALADSV 30 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~l 30 (128)
+.|.|..|..-+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 569999998877655443
No 26
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=43.01 E-value=7.3 Score=18.29 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=14.2
Q ss_pred cEEeccCCCCcccCCCCee
Q 033060 13 SYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~lI 31 (128)
+.|.|..|...+...+.|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 4689999988777666554
No 27
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.55 E-value=5.4 Score=19.73 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.3
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~ 24 (35)
T 2elx_A 4 GSSGYVCALCLKKFVSSIRLR 24 (35)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCcchhCCHHHHH
Confidence 457899999988776655543
No 28
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.88 E-value=8.5 Score=19.40 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=15.1
Q ss_pred CccEEeccCCCCcccCC-CCe
Q 033060 11 GRSYYKCRFCNSHLALA-DSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~-~~l 30 (128)
+.+.|.|..|..-+... +.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~~L 26 (37)
T 2elp_A 6 SGRAMKCPYCDFYFMKNGSDL 26 (37)
T ss_dssp CCCCEECSSSSCEECSSCHHH
T ss_pred CCCCeECCCCChhhccCHHHH
Confidence 45789999998877765 444
No 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.26 E-value=7.6 Score=18.14 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=12.8
Q ss_pred EEeccCCCCcccCCCCe
Q 033060 14 YYKCRFCNSHLALADSV 30 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~l 30 (128)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 2 KFACPECPKRFMRSDHL 18 (29)
T ss_dssp CEECSSSSCEESCSHHH
T ss_pred CccCCCCCchhCCHHHH
Confidence 58999998877766554
No 30
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.15 E-value=6.1 Score=19.86 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=15.2
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+.+.|.|..|..-+...+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elq_A 6 SGKPFKCSLCEYATRSKSNL 25 (36)
T ss_dssp CCCSEECSSSSCEESCHHHH
T ss_pred CCCCccCCCCCchhCCHHHH
Confidence 45789999999877765544
No 31
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.96 E-value=6.4 Score=19.79 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=14.4
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+.+.|.|..|..-+...+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elv_A 6 SGLLYDCHICERKFKNELDR 25 (36)
T ss_dssp CCCCEECSSSCCEESSHHHH
T ss_pred CCCCeECCCCCCccCCHHHH
Confidence 35789999998776655444
No 32
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.14 E-value=5.5 Score=18.66 Aligned_cols=18 Identities=22% Similarity=0.694 Sum_probs=13.2
Q ss_pred cEEeccCCCCcccCCCCe
Q 033060 13 SYYKCRFCNSHLALADSV 30 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~l 30 (128)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 469999998877665444
No 33
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.21 E-value=9.1 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=13.6
Q ss_pred EEeccCCCCcccCCCCee
Q 033060 14 YYKCRFCNSHLALADSVL 31 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~lI 31 (128)
.|.|..|..-+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLI 19 (29)
Confidence 588999988777666654
No 34
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.94 E-value=6.2 Score=18.42 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=13.1
Q ss_pred cEEeccCCCCcccCCCCe
Q 033060 13 SYYKCRFCNSHLALADSV 30 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~l 30 (128)
+.|.|..|..-+.....|
T Consensus 2 k~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CCEECTTTCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 569999998876655444
No 35
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.49 E-value=15 Score=21.84 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.4
Q ss_pred EEeccCCCCcccC
Q 033060 14 YYKCRFCNSHLAL 26 (128)
Q Consensus 14 ~y~C~~C~thLa~ 26 (128)
-|.|..|+.+|..
T Consensus 31 CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 31 HFVCAKCEKPFLG 43 (66)
T ss_dssp TCBCTTTCCBCSS
T ss_pred cCEECCCCCCCCC
Confidence 4889999988864
No 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.14 E-value=7.4 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.700 Sum_probs=14.7
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+.+.|.|..|...+.....|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSL 25 (36)
T ss_dssp CCCCEECTTTCCEESSHHHH
T ss_pred CCCCEECCCCCceeCCHHHH
Confidence 35789999998877665444
No 37
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.13 E-value=10 Score=19.98 Aligned_cols=22 Identities=18% Similarity=0.553 Sum_probs=16.8
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+++.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2yu5_A 8 AGENPFKCSKCDRVFTQRNYLV 29 (44)
T ss_dssp SCCCSEECSSSSCEESSSHHHH
T ss_pred CCCCCeECCCCCchhCCHHHHH
Confidence 3457899999998877766654
No 38
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.12 E-value=5.6 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=14.9
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+.+.|.|..|..-+...+.|
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l 27 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHL 27 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHH
T ss_pred CCCCccCCCCCcccCcHHHH
Confidence 45789999998877665444
No 39
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.12 E-value=7.1 Score=19.44 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=14.6
Q ss_pred CccEEeccCCCCcccCCCCe
Q 033060 11 GRSYYKCRFCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~l 30 (128)
+.+.|.|..|..-+...+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elt_A 6 SGKPYKCPQCSYASAIKANL 25 (36)
T ss_dssp CCCSEECSSSSCEESSHHHH
T ss_pred CCCCCCCCCCCcccCCHHHH
Confidence 45789999998876655444
No 40
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=31.79 E-value=7.9 Score=20.07 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~ 28 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLA 28 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHH
Confidence 457899999998777665554
No 41
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=31.51 E-value=13 Score=22.26 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.3
Q ss_pred cEEeccCCCCccc
Q 033060 13 SYYKCRFCNSHLA 25 (128)
Q Consensus 13 ~~y~C~~C~thLa 25 (128)
.-|.|..|+.+|.
T Consensus 31 ~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 31 ECFLCSCCSKCLI 43 (65)
T ss_dssp TTSBCTTTCCBCT
T ss_pred CCEECCCCCCcCC
Confidence 4578999998886
No 42
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=31.31 E-value=32 Score=23.15 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.4
Q ss_pred EEeeeeeeecCCeeeeEE
Q 033060 67 TVEDIFCCCCGQIVGWKY 84 (128)
Q Consensus 67 ~V~DI~C~~C~~~lGWkY 84 (128)
.+.--||..|++.|-|..
T Consensus 64 ~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CSEEEEETTTCCEEEEEC
T ss_pred CEeeEECCCCCccccCcc
Confidence 456679999999998754
No 43
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.30 E-value=5.6 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=15.5
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~ 26 (37)
T 2elo_A 6 SGRSYSCPVCEKSFSEDRLIK 26 (37)
T ss_dssp CCCCCEETTTTEECSSHHHHH
T ss_pred CCCCcCCCCCCCccCCHHHHH
Confidence 457899999988776655543
No 44
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=30.03 E-value=8.2 Score=17.93 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=13.6
Q ss_pred EEeccCCCCcccCCCCee
Q 033060 14 YYKCRFCNSHLALADSVL 31 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~lI 31 (128)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 588999988887766554
No 45
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=30.00 E-value=7.8 Score=19.96 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 3 ~~k~~~C~~C~k~f~~~~~L~ 23 (39)
T 1njq_A 3 PPRSYTCSFCKREFRSAQALG 23 (39)
T ss_dssp CSSSEECTTTCCEESSHHHHH
T ss_pred CCCceECCCCCcccCCHHHHH
Confidence 456799999988777665554
No 46
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.83 E-value=21 Score=21.51 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=9.5
Q ss_pred EEeccCCCCccc
Q 033060 14 YYKCRFCNSHLA 25 (128)
Q Consensus 14 ~y~C~~C~thLa 25 (128)
-|.|..|+.+|.
T Consensus 33 CF~C~~C~~~L~ 44 (72)
T 1x61_A 33 CFVCSTCRAQLR 44 (72)
T ss_dssp TCBCSSSCCBCT
T ss_pred CCcccccCCcCC
Confidence 488888888884
No 47
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.77 E-value=8.1 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+++.|.|..|..-+...+.|.
T Consensus 7 ~~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2en2_A 7 GGEKPYKCETCGARFVQVAHLR 28 (42)
T ss_dssp CSSCSEECTTTCCEESSHHHHH
T ss_pred CCCCCEeCCCcChhhCCHHHHH
Confidence 3567899999988777665543
No 48
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=29.64 E-value=38 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred cccCCCeEEEeeccccccCCcccceeeeeccE
Q 033060 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMH 66 (128)
Q Consensus 35 F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H 66 (128)
=.|+||.|+.=-.+.|+..|...++.+.+|--
T Consensus 34 KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ 65 (138)
T 1iz6_A 34 SPGKHGSAKARIEAVGIFDGKVRSIVKPTSAE 65 (138)
T ss_dssp CCCTTSCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCCCCCceEEEEEEEECCCCCEEEEEecCCCE
Confidence 36999999988899999999998888777753
No 49
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.59 E-value=13 Score=19.75 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=16.0
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-++..+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYLT 29 (46)
T ss_dssp CSCCEECSSSCCEESSSHHHH
T ss_pred CCCCEECcCCCCcCCCHHHHH
Confidence 457899999988777666554
No 50
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.87 E-value=5.9 Score=18.75 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=12.1
Q ss_pred cEEeccCCCCcccCCCC
Q 033060 13 SYYKCRFCNSHLALADS 29 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~ 29 (128)
+.|.|..|..-+...+.
T Consensus 2 k~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLAS 18 (27)
T ss_dssp CTEEETTTTEEESCHHH
T ss_pred cCcCCCCCCcccCCHHH
Confidence 46899999876665443
No 51
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.82 E-value=7.3 Score=19.39 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=15.5
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|...+.....|.
T Consensus 6 ~~~~~~C~~C~k~f~~~~~l~ 26 (36)
T 2elr_A 6 SGKTHLCDMCGKKFKSKGTLK 26 (36)
T ss_dssp CCSSCBCTTTCCBCSSHHHHH
T ss_pred CCCCeecCcCCCCcCchHHHH
Confidence 457899999998777655543
No 52
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.42 E-value=8.2 Score=18.17 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=12.4
Q ss_pred EEeccCCCCcccCCCCe
Q 033060 14 YYKCRFCNSHLALADSV 30 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~l 30 (128)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 57899998877665554
No 53
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=27.40 E-value=46 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=25.4
Q ss_pred ccCCCeEEEeeccccccCCcccceeeeecc
Q 033060 36 NCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (128)
Q Consensus 36 ~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~ 65 (128)
.|+||.|+.=-++.|+..|...++.+.+|-
T Consensus 39 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 39 PGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 599999998889999999998887777664
No 54
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=26.92 E-value=16 Score=19.34 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=17.3
Q ss_pred CccEEeccCCCCcccCCCCeee
Q 033060 11 GRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lIS 32 (128)
+.+.|.|..|..-+...+.|..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ely_A 9 GEKPFKCVECGKGFSRRSALNV 30 (46)
T ss_dssp CCCSBCCSSSCCCBSSTTHHHH
T ss_pred CCCCcccCccCcccCCHHHHHH
Confidence 4578999999988887776653
No 55
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.65 E-value=14 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=16.8
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yu8_A 8 TGEKPYKCNECGKVFTQNSHLA 29 (46)
T ss_dssp CCCSSEECSSSCCEESSSHHHH
T ss_pred CCCCCeECCcCCchhCCHHHHH
Confidence 3567899999998877766654
No 56
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.64 E-value=14 Score=19.57 Aligned_cols=21 Identities=19% Similarity=0.618 Sum_probs=16.5
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2en3_A 9 GEKPFQCKECGMNFSWSCSLF 29 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHH
T ss_pred CCCCeeCcccChhhCCHHHHH
Confidence 457899999998887766654
No 57
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=26.58 E-value=10 Score=19.64 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 6 ~~~k~~~C~~C~k~f~~~~~L~ 27 (42)
T 2el5_A 6 SGENPYECSECGKAFNRKDQLI 27 (42)
T ss_dssp SSCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCccCCCcChhhCCHHHHH
Confidence 3467899999988777665554
No 58
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.55 E-value=8.2 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (42)
T 2yte_A 7 GEKPYSCAECKETFSDNNRLV 27 (42)
T ss_dssp SCCSCBCTTTCCBCSSHHHHH
T ss_pred CCCCeECCCCCCccCCHHHHH
Confidence 457899999998777665554
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.37 E-value=23 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=9.4
Q ss_pred EEeccCCCCccc
Q 033060 14 YYKCRFCNSHLA 25 (128)
Q Consensus 14 ~y~C~~C~thLa 25 (128)
-|.|..|+.+|.
T Consensus 31 CF~C~~C~~~L~ 42 (70)
T 2d8z_A 31 CFVCTACRKQLS 42 (70)
T ss_dssp TSBCSSSCCBCT
T ss_pred CCccCCCCCcCC
Confidence 478888888885
No 60
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.30 E-value=9 Score=17.70 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=12.0
Q ss_pred EEeccCCCCcccCCCCe
Q 033060 14 YYKCRFCNSHLALADSV 30 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~l 30 (128)
.|.|..|..-+.....|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CEECTTTSCEESCHHHH
T ss_pred CccCCCCCCccCChhHH
Confidence 58899998766655444
No 61
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=26.29 E-value=11 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=16.0
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+.....|.
T Consensus 4 ~~kp~~C~~C~k~F~~~~~L~ 24 (48)
T 3iuf_A 4 RDKPYACDICGKRYKNRPGLS 24 (48)
T ss_dssp TTSCEECTTTCCEESSHHHHH
T ss_pred CCcCEECCCcCcccCCHHHHH
Confidence 467899999998777666554
No 62
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.19 E-value=11 Score=19.47 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGSLT 27 (41)
T ss_dssp CCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCCCcCCHHHHH
Confidence 457899999988776655553
No 63
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=27 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.795 Sum_probs=10.2
Q ss_pred cEEeccCCCCccc
Q 033060 13 SYYKCRFCNSHLA 25 (128)
Q Consensus 13 ~~y~C~~C~thLa 25 (128)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 34 DCFNCKKCSLSLV 46 (72)
T ss_dssp TTCBCSSSCCBCT
T ss_pred ccCEeccCCCcCC
Confidence 3488888888886
No 64
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.04 E-value=15 Score=19.43 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=17.1
Q ss_pred CCccEEeccCCCCcccCCCCeee
Q 033060 10 KGRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lIS 32 (128)
.+++.|.|..|..-++..+.|..
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2epw_A 8 TGEKPCKCTECGKAFCWKSQLIM 30 (46)
T ss_dssp CCCCSEECSSSCCEESSSHHHHH
T ss_pred CCCCCeeCCCCCCccCCHHHHHH
Confidence 34578999999888777666543
No 65
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.03 E-value=9.6 Score=19.85 Aligned_cols=21 Identities=19% Similarity=0.611 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2eos_A 8 GEKPYPCEICGTRFRHLQTLK 28 (42)
T ss_dssp SSCCBCCSSSCCCBSSHHHHH
T ss_pred CCCCEECCCCCCccCCHHHHH
Confidence 457899999998777665554
No 66
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.74 E-value=18 Score=22.06 Aligned_cols=11 Identities=36% Similarity=1.077 Sum_probs=7.4
Q ss_pred EeccCCCCccc
Q 033060 15 YKCRFCNSHLA 25 (128)
Q Consensus 15 y~C~~C~thLa 25 (128)
|.|..|+.+|.
T Consensus 47 F~C~~C~~~L~ 57 (77)
T 2egq_A 47 FHCKKCSVNLA 57 (77)
T ss_dssp CBCSSSCCBCT
T ss_pred CEehhcCCCCC
Confidence 66666766665
No 67
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.17 E-value=11 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (44)
T 2epv_A 9 GEKPYECNECGKAFIWKSLLI 29 (44)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCcCeECCCCCcccCchHHHH
Confidence 457899999998777665554
No 68
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.15 E-value=13 Score=19.46 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~ 29 (44)
T 2eox_A 9 DSKSYNCNECGKAFTRIFHLT 29 (44)
T ss_dssp CCCCEEETTTTEEESSSHHHH
T ss_pred CCCCeECcccCcccCCHHHHH
Confidence 457899999988777666554
No 69
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.69 E-value=12 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yts_A 8 TGEKPYICNECGKSFIQKSHLN 29 (46)
T ss_dssp CSCCSEECSSSCCEESSHHHHH
T ss_pred CCCcCEECCCCChhhCChHHHH
Confidence 3457899999988777666554
No 70
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.57 E-value=12 Score=19.84 Aligned_cols=22 Identities=14% Similarity=0.535 Sum_probs=16.3
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ytf_A 8 TGEKPFECSECQKAFNTKSNLI 29 (46)
T ss_dssp CCCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCcCCCCCCcccCCHHHHH
Confidence 3457899999988777665554
No 71
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.49 E-value=12 Score=19.75 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eow_A 8 TGEKPYKCNECGKAFRARSSLA 29 (46)
T ss_dssp CCCCCEECTTSCCEESSHHHHH
T ss_pred CCCCCeeccccCChhcCHHHHH
Confidence 3467899999988777665553
No 72
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.32 E-value=36 Score=20.95 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=10.4
Q ss_pred EEeccCCCCcccCC
Q 033060 14 YYKCRFCNSHLALA 27 (128)
Q Consensus 14 ~y~C~~C~thLa~~ 27 (128)
-|.|..|+.+|...
T Consensus 34 CF~C~~C~~~L~~~ 47 (81)
T 1a7i_A 34 CFLCMVCRKNLDST 47 (81)
T ss_dssp SEECSSSCCEECSS
T ss_pred cCccCCCCCCCCCC
Confidence 47888888887654
No 73
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.32 E-value=12 Score=19.85 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eor_A 9 GEKPYNCEECGKAFIHDSQLQ 29 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHH
T ss_pred CCcCccCCCCCCCcCCHHHHH
Confidence 457899999988777665543
No 74
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.17 E-value=12 Score=19.51 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=16.3
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2eof_A 8 TGEKPYECNECQKAFNTKSNLM 29 (44)
T ss_dssp SCCCSEECTTTCCEESCHHHHH
T ss_pred CCCCCeECCCCCcccCCHhHHH
Confidence 3457899999998777666554
No 75
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.15 E-value=35 Score=19.65 Aligned_cols=13 Identities=38% Similarity=1.004 Sum_probs=6.9
Q ss_pred ccEEeccCCCCcc
Q 033060 12 RSYYKCRFCNSHL 24 (128)
Q Consensus 12 ~~~y~C~~C~thL 24 (128)
++.|.|..|..-+
T Consensus 12 ~k~~~C~~C~k~F 24 (62)
T 1vd4_A 12 RASFKCPVCSSTF 24 (62)
T ss_dssp SSEEECSSSCCEE
T ss_pred CCCccCCCCCchh
Confidence 3456666665543
No 76
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.13 E-value=25 Score=21.51 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=9.6
Q ss_pred cEEeccCCCCccc
Q 033060 13 SYYKCRFCNSHLA 25 (128)
Q Consensus 13 ~~y~C~~C~thLa 25 (128)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (76)
T 1x68_A 34 ECFNCGKCSVSLV 46 (76)
T ss_dssp GGCBCTTTCCBCS
T ss_pred ccCChhhCCCcCC
Confidence 3478888888776
No 77
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=25 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.7
Q ss_pred EEeccCCCCccc
Q 033060 14 YYKCRFCNSHLA 25 (128)
Q Consensus 14 ~y~C~~C~thLa 25 (128)
-|.|..|+.+|.
T Consensus 31 CF~C~~C~~~L~ 42 (69)
T 2cur_A 31 CFVCVTCSKKLA 42 (69)
T ss_dssp TTBCTTTCCBCT
T ss_pred cCEECCCCCCCC
Confidence 377777777776
No 78
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.92 E-value=17 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCccEEeccCCCCcccCCCCeee
Q 033060 10 KGRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lIS 32 (128)
.+.+.|.|..|..-+...+.|..
T Consensus 8 ~~~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytg_A 8 TGEKPFKCGECGKSYNQRVHLTQ 30 (46)
T ss_dssp SSCCSEECTTTCCEESSSHHHHT
T ss_pred CCCCCeECCCCCcccCCHHHHHH
Confidence 34678999999987777666543
No 79
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=23.79 E-value=12 Score=19.86 Aligned_cols=21 Identities=14% Similarity=0.594 Sum_probs=15.6
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQLA 29 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHH
T ss_pred CCCCEECCCCCcccCCHHHHH
Confidence 457899999988777655543
No 80
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=23.64 E-value=57 Score=23.02 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred ccCCCeEEEeeccccccCCcccceeeeeccE
Q 033060 36 NCRRGRAYLFSDVVNIMLGPQEERLMLSGMH 66 (128)
Q Consensus 36 ~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~H 66 (128)
.|++|.|+.=-.+.|+..|...++.+.+|--
T Consensus 37 pGKgG~A~vr~k~knl~tG~~~e~tf~s~~k 67 (136)
T 1bkb_A 37 TGKHGSAKARIVAVGVFDGGKRTLSLPVDAQ 67 (136)
T ss_dssp CSTTSCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred CCCCCceEEEEEEEECCCCCeEEEEEcCCCE
Confidence 6999999988899999999998888777753
No 81
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.61 E-value=12 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2emb_A 8 HTRKRYECSKCQATFNLRKHLI 29 (44)
T ss_dssp CCCSSEECTTTCCEESCHHHHH
T ss_pred CCCCCeECCCCCCccCCHHHHH
Confidence 3457899999998777665554
No 82
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.39 E-value=14 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=16.1
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-++..+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yto_A 9 GEKPYKCSDCGKAFTRKSGLH 29 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHH
T ss_pred CCCCEECcccCCccCCHhHHH
Confidence 457899999998777666554
No 83
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.31 E-value=14 Score=19.57 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~~~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emi_A 8 TGERHYECSECGKAFIQKSTLS 29 (46)
T ss_dssp SSCCCEECSSSCCEESSHHHHH
T ss_pred CCCCCCCCCCCCcccCCHHHHH
Confidence 3467899999988777665554
No 84
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.31 E-value=14 Score=19.67 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+++.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2eoo_A 8 SGERPYGCNECGKNFGRHSHLI 29 (46)
T ss_dssp SCCCCEECSSSCCEESSHHHHH
T ss_pred CCCCCEEccccCcccCCHHHHH
Confidence 3567899999988777666554
No 85
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.30 E-value=14 Score=19.69 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=15.8
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-++..+.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2ytp_A 9 GERHYECSECGKAFARKSTLI 29 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCcCCcccCCHHHHH
Confidence 457899999988777665554
No 86
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=23.16 E-value=48 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=22.3
Q ss_pred cccCCCeEEEeeccccccCCcccceeeeecc
Q 033060 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (128)
Q Consensus 35 F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~ 65 (128)
=.|++|.|+.--.+.|+..|...++.+.+|-
T Consensus 34 KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~ 64 (138)
T 3cpf_A 34 KTGKHGHAKVHLVGIDIFTGKKYEDICPSTH 64 (138)
T ss_dssp CC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred cCCCCccEEEEEEEEECCCCCEEEEEeCCCC
Confidence 3699999988889999999999887776664
No 87
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.05 E-value=14 Score=19.31 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 6 ~~~k~~~C~~C~k~f~~~~~L~ 27 (44)
T 2emx_A 6 SGEKPFGCSCCEKAFSSKSYLL 27 (44)
T ss_dssp SSCCCEECSSSSCEESSHHHHH
T ss_pred CCCcCccCCCCCcccCCHHHHH
Confidence 3467899999988777665554
No 88
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.96 E-value=14 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.6
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLT 29 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCCccCCHHHHH
Confidence 457899999988776655543
No 89
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.72 E-value=13 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em4_A 9 GQRPYECIECGKAFKTKSSLI 29 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHH
T ss_pred CCcCcCCCCCCCccCCHHHHH
Confidence 457899999988777665554
No 90
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.68 E-value=14 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=16.3
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ep3_A 8 TGEKPYRCAECGKAFTDRSNLF 29 (46)
T ss_dssp SCCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCeECCCCCchhCCHHHHH
Confidence 3457899999988777665554
No 91
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.59 E-value=34 Score=20.40 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=9.1
Q ss_pred EEeccCCCCcccC
Q 033060 14 YYKCRFCNSHLAL 26 (128)
Q Consensus 14 ~y~C~~C~thLa~ 26 (128)
-|.|..|+.+|..
T Consensus 33 CF~C~~C~~~L~~ 45 (72)
T 1wyh_A 33 CFLCSGCEQPLGS 45 (72)
T ss_dssp TCBCTTTCCBTTT
T ss_pred cCeECCCCCcCCC
Confidence 3777777777764
No 92
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=11 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=16.7
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2enf_A 8 TGEKPYKCNECGKVFTQNSHLV 29 (46)
T ss_dssp CCCCSCBCSSSCCBCSSHHHHH
T ss_pred CCCcCeECCCCCcccCCHHHHH
Confidence 3467899999998877766654
No 93
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=22.51 E-value=14 Score=19.51 Aligned_cols=22 Identities=23% Similarity=0.535 Sum_probs=15.9
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ema_A 8 TGEKRYKCNECGKVFSRNSQLS 29 (46)
T ss_dssp TTSCCEECSSSCCEESSHHHHH
T ss_pred CCCcCcCCCCCcchhCCHHHHH
Confidence 3467899999987776655544
No 94
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.49 E-value=11 Score=19.46 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=16.3
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 7 ~~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2ytb_A 7 GGEKPYRCDQCGKAFSQKGSLI 28 (42)
T ss_dssp CSCCSBCCTTTTCCBSSHHHHH
T ss_pred CCCCCeeCCCccchhCCHHHHH
Confidence 3457899999998877665554
No 95
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.29 E-value=13 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=16.2
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|...+...+.|.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (43)
T 2yrm_A 7 GNGAFFCNECDCRFSEEASLK 27 (43)
T ss_dssp SSCCBCCSSSCCCBSSHHHHH
T ss_pred CCCCEECCCCCCeeCChHHHH
Confidence 457899999998887766554
No 96
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.24 E-value=26 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=7.7
Q ss_pred eccCCCCcccCCCCee
Q 033060 16 KCRFCNSHLALADSVL 31 (128)
Q Consensus 16 ~C~~C~thLa~~~~lI 31 (128)
.|..|+.++...+.+|
T Consensus 17 ~C~~C~~~I~~~~~~~ 32 (82)
T 2ehe_A 17 TCAECQQLIGHDSREL 32 (82)
T ss_dssp BCTTTCCBCCSSCCBC
T ss_pred cCccCCCccccCcEEE
Confidence 3555555555333333
No 97
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.09 E-value=11 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.349 Sum_probs=12.7
Q ss_pred ccEEeccCCCCcccCCCCee
Q 033060 12 RSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lI 31 (128)
.+.|.|..|..-+.....|.
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~ 21 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLN 21 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHH
T ss_pred CCCccCCCCcchhCChHHHH
Confidence 46788999888777666554
No 98
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.08 E-value=14 Score=19.53 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=16.0
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eml_A 8 TGEKPYECSVCGKAFSHRQSLS 29 (46)
T ss_dssp SSCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCeeCCCcCCccCCHHHHH
Confidence 3567899999988776655554
No 99
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.05 E-value=14 Score=19.64 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em2_A 9 GEKPFKCKECGKAFRQNIHLA 29 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCCCEECCcCCchhCCHHHHH
Confidence 457899999988777665554
No 100
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.03 E-value=48 Score=18.68 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.1
Q ss_pred CccEEeccCCCCcccCCCCeee
Q 033060 11 GRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lIS 32 (128)
+.+.|.|..|..-+...+.|..
T Consensus 15 ~~~~~~C~~C~k~f~~~~~l~~ 36 (73)
T 2ctu_A 15 GDRSQKCSKCGIIFIRRSTLSR 36 (73)
T ss_dssp CCSEEECSSSCCEEECCCCCCC
T ss_pred CCCCeeCCcccchhCCHHHhCc
Confidence 4578999999988888777765
No 101
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.91 E-value=14 Score=19.53 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=16.8
Q ss_pred CCccEEeccCCCCcccCCCCeee
Q 033060 10 KGRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lIS 32 (128)
.+.+.|.|..|..-++..+.|..
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep2_A 8 TGEKPYECSICGKSFTKKSQLHV 30 (46)
T ss_dssp SCCCSEECSSSCCEESSHHHHHH
T ss_pred CCCcCcCCCCCCcccCCHHHHHH
Confidence 34678999999887776665543
No 102
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.90 E-value=15 Score=19.50 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ytk_A 8 SGEKPYKCNECGKVFTQNSHLT 29 (46)
T ss_dssp SSSCSEECSSSCCEESSHHHHH
T ss_pred CCCCCEeCCcCCCccCCHHHHH
Confidence 3457899999988777665554
No 103
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.88 E-value=15 Score=19.50 Aligned_cols=22 Identities=18% Similarity=0.603 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~~~~~C~~C~k~F~~~~~L~ 29 (46)
T 2em3_A 8 TGEKPYECKVCSKAFTQKAHLA 29 (46)
T ss_dssp SSCCSEECSSSCCEESSHHHHH
T ss_pred CCCcCeECCCCCcccCCHHHHH
Confidence 3457899999988777665554
No 104
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.88 E-value=15 Score=19.50 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2eq0_A 8 TGEKPYKCHECGKVFRRNSHLA 29 (46)
T ss_dssp TCCCCEECTTTCCEESSHHHHH
T ss_pred CCCCCeECCCCCchhCCHHHHH
Confidence 3467899999988777665554
No 105
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.77 E-value=16 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.458 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emf_A 8 TGGKHFECTECGKAFTRKSTLS 29 (46)
T ss_dssp SSSCCEECSSSCCEESCHHHHH
T ss_pred CCCCCeECCCCCchhCCHHHHH
Confidence 3457899999988777665554
No 106
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.70 E-value=16 Score=19.39 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=16.8
Q ss_pred CccEEeccCCCCcccCCCCeee
Q 033060 11 GRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lIS 32 (128)
+.+.|.|..|..-+...+.|..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enh_A 9 GEKPYECDVCRKAFSHHASLTQ 30 (46)
T ss_dssp CSSSCBCTTTCCBCSSSHHHHH
T ss_pred CCCCcCCCCcCchhCCHHHHHH
Confidence 4578999999988877766643
No 107
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.69 E-value=9.8 Score=17.63 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=11.9
Q ss_pred EEeccCCCCcccCCCCe
Q 033060 14 YYKCRFCNSHLALADSV 30 (128)
Q Consensus 14 ~y~C~~C~thLa~~~~l 30 (128)
.|.|..|..-+...+.|
T Consensus 2 ~~~C~~C~~~f~~~~~l 18 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHL 18 (29)
T ss_dssp CCBCTTTCCBCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 57899998776655444
No 108
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.69 E-value=12 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=17.1
Q ss_pred CCccEEeccCCCCcccCCCCeee
Q 033060 10 KGRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lIS 32 (128)
.+.+.|.|..|..-++..+.|..
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yth_A 8 SGEKPFQCEECGKRFTQNSHLHS 30 (46)
T ss_dssp CCSSSBCCSSSCCCBSSHHHHHH
T ss_pred CCCcCCCCCCCCcccCCHHHHHH
Confidence 34578999999988777666543
No 109
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=21.68 E-value=70 Score=23.73 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.9
Q ss_pred cccCCCeEEEeeccccccCCcccceeeeecc
Q 033060 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (128)
Q Consensus 35 F~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~ 65 (128)
=.|++|.|+.=-.+.|+..|...++.+.+|-
T Consensus 58 KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~ 88 (167)
T 3er0_A 58 KTGKHGHAKVHLVAIDIFTGKKLEDLSPSTH 88 (167)
T ss_dssp CCSSSSCCEEEEEEEESSSCCCEEEEEESSS
T ss_pred CCCCcCceEEEEEEEEcCCCCEEEEEEcCCC
Confidence 3688999998889999999999887776664
No 110
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.66 E-value=15 Score=19.43 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2emm_A 8 TGERPHKCNECGKSFIQSAHLI 29 (46)
T ss_dssp SCCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCeeCCCCChhhCCHHHHH
Confidence 3457899999988776655543
No 111
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=21.62 E-value=15 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=16.5
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2el4_A 8 TGVKPYGCSQCAKTFSLKSQLI 29 (46)
T ss_dssp CCCCSEECSSSSCEESSHHHHH
T ss_pred CCCCceECCCCCchhCCHHHHH
Confidence 3467899999998777766554
No 112
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.44 E-value=15 Score=19.44 Aligned_cols=22 Identities=18% Similarity=0.588 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ytj_A 8 TGEKPYICAECGKAFTIRSNLI 29 (46)
T ss_dssp SSCCSEECSSSCCEESSHHHHH
T ss_pred CCCcCeECCCCChhhCCHHHHH
Confidence 3567899999988777665554
No 113
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.35 E-value=15 Score=19.40 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2emp_A 8 TGVKPYMCNECGKAFSVYSSLT 29 (46)
T ss_dssp SCCCSEECSSSCCEESCHHHHH
T ss_pred CCCcCeECCCCCchhCCHHHHH
Confidence 3467899999988777665554
No 114
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.34 E-value=38 Score=20.74 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.7
Q ss_pred cEEeccCCCCcccCCCC
Q 033060 13 SYYKCRFCNSHLALADS 29 (128)
Q Consensus 13 ~~y~C~~C~thLa~~~~ 29 (128)
.+|.|..|.+.++..+.
T Consensus 2 ~iY~C~rCg~~fs~~el 18 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQL 18 (48)
T ss_dssp ---CCCCTTTTCCCCCS
T ss_pred cEEEeeccCCCccHHHH
Confidence 47999999998887664
No 115
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=15 Score=19.39 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yso_A 8 SREKSHQCRECGEIFFQYVSLI 29 (46)
T ss_dssp SCCCCEECTTTCCEESSHHHHH
T ss_pred CCCCCEEccccChhhCCHHHHH
Confidence 3457899999988777665554
No 116
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=15 Score=19.46 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ene_A 8 TGEKPYKCNECGKVFRHNSYLS 29 (46)
T ss_dssp CCSSSEECSSSCCEESSHHHHH
T ss_pred CCCCCeECCCCCchhCChHHHH
Confidence 3457899999988777665554
No 117
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.20 E-value=13 Score=19.88 Aligned_cols=21 Identities=24% Similarity=0.754 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eon_A 9 GEKPYKCQVCGKAFRVSSHLV 29 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHH
T ss_pred CCcccCCCCCCcccCcHHHHH
Confidence 457899999998777665554
No 118
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.16 E-value=15 Score=22.10 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.8
Q ss_pred ccEEeccCCCCcccCCCCeee
Q 033060 12 RSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lIS 32 (128)
++.|.|..|..-+...+.|..
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~ 22 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSR 22 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHH
T ss_pred CCCccCCCCCCEeCCHHHHHH
Confidence 567888888877766665543
No 119
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.08 E-value=15 Score=19.37 Aligned_cols=22 Identities=23% Similarity=0.739 Sum_probs=16.1
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eme_A 8 SGEKPYVCDYCGKAFGLSAELV 29 (46)
T ss_dssp CCCCSEECSSSCCEESSHHHHH
T ss_pred CCCCCeECCCCChhhCCHHHHH
Confidence 3457899999988777665554
No 120
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=15 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=15.6
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2enc_A 9 GEKPFKCEECGKGFYTNSQCY 29 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCCCcCCCCCCCcCCChHHHH
Confidence 457899999988776665554
No 121
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.94 E-value=12 Score=19.79 Aligned_cols=22 Identities=14% Similarity=0.472 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-+...+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2emg_A 8 TGENPFICSECGKVFTHKTNLI 29 (46)
T ss_dssp CSCCSCBCTTTCCBCSSHHHHH
T ss_pred CCCCCEECCccCcccCCHHHHH
Confidence 3457899999998877666554
No 122
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.94 E-value=16 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDLY 29 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHH
T ss_pred CCcCccCCCccchhCCHHHHH
Confidence 457899999988776665554
No 123
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=20.87 E-value=15 Score=19.33 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em9_A 9 GEKPYNCKECGKSFRWASCLL 29 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCcCeECCccccccCChHHHH
Confidence 457899999988776665554
No 124
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=14 Score=19.67 Aligned_cols=21 Identities=24% Similarity=0.705 Sum_probs=16.0
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em6_A 9 GEKCYKCDVCGKEFSQSSHLQ 29 (46)
T ss_dssp CCCCCBCSSSCCBCSSHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHH
Confidence 457899999998877666554
No 125
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.75 E-value=13 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=16.5
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+++.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eq4_A 8 TGEKLYNCKECGKSFSRAPCLL 29 (46)
T ss_dssp SCCCCCCBTTTTBCCSCHHHHH
T ss_pred CCCCCeECCCCCCccCchHHHH
Confidence 3457899999998877766554
No 126
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.68 E-value=17 Score=19.22 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=16.2
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emy_A 8 TGENPYECHECGKAFSRKYQLI 29 (46)
T ss_dssp CSSCCEECSSSCCEESSHHHHH
T ss_pred CCCcCcCCCCCCcccCcHHHHH
Confidence 3457899999988777665554
No 127
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.68 E-value=15 Score=19.42 Aligned_cols=22 Identities=18% Similarity=0.548 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+++.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emh_A 8 TGERPYICTVCGKAFTDRSNLI 29 (46)
T ss_dssp SCCCSEECTTTCCEESSHHHHH
T ss_pred CCCCCcCCCCCCchhCCHHHHH
Confidence 3457899999998777666554
No 128
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=20.67 E-value=16 Score=20.28 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=15.5
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 21 ~~k~~~C~~C~k~f~~~~~L~ 41 (54)
T 1yui_A 21 SEQPATCPICYAVIRQSRNLR 41 (54)
T ss_dssp SSCCEECTTTCCEESSHHHHH
T ss_pred CCCCccCCCCCcccCCHHHHH
Confidence 457899999988776655543
No 129
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.63 E-value=16 Score=19.43 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=16.3
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em5_A 8 SSTKSHQCHECGRGFTLKSHLN 29 (46)
T ss_dssp CCSCSEECSSSCCEESSHHHHH
T ss_pred CCCCCeECCcCCCccCCHHHHH
Confidence 3457899999998777666554
No 130
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.54 E-value=16 Score=19.40 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=15.7
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+++.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRLL 29 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHH
Confidence 457899999998777665554
No 131
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.49 E-value=38 Score=19.40 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=12.0
Q ss_pred CccEEecc-CCCCcccCCCCe
Q 033060 11 GRSYYKCR-FCNSHLALADSV 30 (128)
Q Consensus 11 g~~~y~C~-~C~thLa~~~~l 30 (128)
+.+.|.|. .|..-+...++|
T Consensus 33 ~~~p~~C~~~C~k~f~~~~~L 53 (66)
T 2eod_A 33 PRLPVACPNQCGVGTVAREDL 53 (66)
T ss_dssp SSSEEECTTCCSCCEEETTTH
T ss_pred CCcCccCCcccCcccccHHHH
Confidence 45667777 676655554444
No 132
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=20.46 E-value=15 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=16.4
Q ss_pred CccEEeccCCCCcccCCCCeee
Q 033060 11 GRSYYKCRFCNSHLALADSVLS 32 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lIS 32 (128)
+++.|.|..|...+...+.|..
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~ 28 (66)
T 2drp_A 7 GEHTYRCKVCSRVYTHISNFCR 28 (66)
T ss_dssp ETTEEECTTTCCEESSHHHHHH
T ss_pred CCcceECCCCcchhCCHHHHHH
Confidence 4678999999887776655543
No 133
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=20.44 E-value=37 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.9
Q ss_pred ccEEeccCCCCcccCCCCeeeeccccCCC
Q 033060 12 RSYYKCRFCNSHLALADSVLSWSFNCRRG 40 (128)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G 40 (128)
++.|-|..|+.+=+...-|+.-.|....+
T Consensus 93 p~RYfCtQCHVpQada~PlV~N~F~~~~~ 121 (130)
T 1ogy_B 93 PRRYFCTACHVPQTNAQPLVTNEFRDMLT 121 (130)
T ss_dssp STTCCGGGTCCBCBCCCCSSCBCCBCSSS
T ss_pred ccceecccccCccccCccccccccccchh
Confidence 47799999999999999999988876543
No 134
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.16 E-value=14 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.683 Sum_probs=15.9
Q ss_pred CccEEeccCCCCcccCCCCee
Q 033060 11 GRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 11 g~~~y~C~~C~thLa~~~~lI 31 (128)
+.+.|.|..|..-+...+.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2en9_A 9 GKKLFKCNECKKTFTQSSSLT 29 (46)
T ss_dssp SSCCCBCTTTCCBCSSHHHHH
T ss_pred CCCCEECCccCcccCCHHHHH
Confidence 457899999998777665554
No 135
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.06 E-value=13 Score=19.67 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=16.6
Q ss_pred CCccEEeccCCCCcccCCCCee
Q 033060 10 KGRSYYKCRFCNSHLALADSVL 31 (128)
Q Consensus 10 ~g~~~y~C~~C~thLa~~~~lI 31 (128)
.+.+.|.|..|..-++..+.|.
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2ytn_A 8 TGKKPYKCNECGKVFTQNSHLA 29 (46)
T ss_dssp SCCSSCBCTTTCCBCSSHHHHH
T ss_pred CCCcCeECCCCCCeeCCHHHHH
Confidence 3457899999998877766654
Done!