Query 033062
Match_columns 128
No_of_seqs 103 out of 1306
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 3.4E-18 7.4E-23 114.8 11.4 100 3-106 54-156 (160)
2 KOG0027 Calmodulin and related 99.8 1.4E-17 3.1E-22 111.7 11.2 101 3-106 42-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.7 7.9E-16 1.7E-20 102.2 11.0 102 3-107 67-171 (172)
4 PTZ00184 calmodulin; Provision 99.6 4.8E-14 1E-18 93.1 12.0 98 5-105 47-147 (149)
5 PTZ00183 centrin; Provisional 99.6 4.9E-14 1.1E-18 94.2 12.2 99 5-106 53-154 (158)
6 KOG0034 Ca2+/calmodulin-depend 99.5 6.3E-13 1.4E-17 91.9 11.4 102 7-111 68-179 (187)
7 KOG0037 Ca2+-binding protein, 99.5 9.5E-13 2.1E-17 91.6 11.1 93 5-107 94-189 (221)
8 cd05022 S-100A13 S-100A13: S-1 99.5 3.2E-13 6.9E-18 83.0 7.2 66 39-107 8-76 (89)
9 KOG0031 Myosin regulatory ligh 99.4 3.6E-12 7.8E-17 84.4 11.2 99 3-105 66-164 (171)
10 PF13499 EF-hand_7: EF-hand do 99.4 8E-13 1.7E-17 76.6 6.9 62 40-104 1-66 (66)
11 PTZ00183 centrin; Provisional 99.4 3.2E-11 6.9E-16 80.5 13.8 118 4-124 16-136 (158)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.4 5.9E-12 1.3E-16 87.3 10.2 100 6-106 65-175 (193)
13 KOG0038 Ca2+-binding kinase in 99.4 6E-12 1.3E-16 82.9 8.9 98 8-107 74-178 (189)
14 cd05027 S-100B S-100B: S-100B 99.4 7.2E-12 1.6E-16 76.9 8.2 65 39-106 8-79 (88)
15 KOG0027 Calmodulin and related 99.3 5.6E-11 1.2E-15 79.7 12.0 106 4-113 7-120 (151)
16 KOG0030 Myosin essential light 99.3 2.3E-11 5E-16 79.3 8.6 97 5-105 47-150 (152)
17 PTZ00184 calmodulin; Provision 99.3 1.6E-10 3.4E-15 76.2 12.7 117 5-124 11-130 (149)
18 cd05031 S-100A10_like S-100A10 99.3 3.1E-11 6.8E-16 74.9 7.3 68 38-108 7-81 (94)
19 KOG0036 Predicted mitochondria 99.2 1.7E-10 3.8E-15 86.9 11.1 93 5-106 51-146 (463)
20 cd05026 S-100Z S-100Z: S-100Z 99.2 1.1E-10 2.3E-15 72.4 8.0 69 39-107 10-82 (93)
21 cd05029 S-100A6 S-100A6: S-100 99.2 1.1E-10 2.3E-15 71.7 7.9 66 39-107 10-80 (88)
22 cd05025 S-100A1 S-100A1: S-100 99.2 1E-10 2.2E-15 72.2 7.9 69 39-107 9-81 (92)
23 COG5126 FRQ1 Ca2+-binding prot 99.2 1.1E-09 2.5E-14 73.7 13.2 105 5-113 20-127 (160)
24 cd00052 EH Eps15 homology doma 99.2 1E-10 2.3E-15 67.5 6.9 60 42-106 2-61 (67)
25 smart00027 EH Eps15 homology d 99.2 2.4E-10 5.3E-15 71.1 7.9 65 37-106 8-72 (96)
26 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.6E-15 64.3 6.2 52 52-106 1-53 (54)
27 KOG0028 Ca2+-binding protein ( 99.1 3.5E-09 7.6E-14 70.8 12.2 103 5-111 33-139 (172)
28 cd00213 S-100 S-100: S-100 dom 99.1 4.7E-10 1E-14 68.6 7.4 67 38-107 7-80 (88)
29 cd05023 S-100A11 S-100A11: S-1 99.1 9.1E-10 2E-14 67.7 8.1 69 39-107 9-81 (89)
30 cd00051 EFh EF-hand, calcium b 99.1 8.9E-10 1.9E-14 61.6 7.2 61 41-104 2-62 (63)
31 PF14658 EF-hand_9: EF-hand do 99.0 1.3E-09 2.9E-14 62.8 6.5 62 43-106 2-64 (66)
32 PLN02964 phosphatidylserine de 99.0 8.3E-09 1.8E-13 82.8 11.6 97 5-106 143-243 (644)
33 cd00252 SPARC_EC SPARC_EC; ext 99.0 5E-09 1.1E-13 67.4 7.6 63 37-106 46-108 (116)
34 KOG0044 Ca2+ sensor (EF-Hand s 98.9 1.8E-08 3.9E-13 70.0 10.5 99 5-106 26-128 (193)
35 cd05030 calgranulins Calgranul 98.9 1.2E-08 2.7E-13 62.5 7.0 66 39-107 8-80 (88)
36 KOG0037 Ca2+-binding protein, 98.8 2.1E-07 4.6E-12 65.2 12.1 113 4-125 56-171 (221)
37 KOG0041 Predicted Ca2+-binding 98.7 5.8E-08 1.3E-12 67.3 7.2 82 21-111 87-168 (244)
38 PF13499 EF-hand_7: EF-hand do 98.6 1.6E-07 3.5E-12 54.0 6.3 59 7-65 2-66 (66)
39 PLN02964 phosphatidylserine de 98.6 4.6E-07 1E-11 72.9 9.4 80 39-124 143-225 (644)
40 KOG0030 Myosin essential light 98.6 2.7E-07 5.8E-12 60.5 6.5 71 35-108 7-79 (152)
41 cd05024 S-100A10 S-100A10: A s 98.5 1.2E-06 2.6E-11 53.8 8.2 65 39-107 8-77 (91)
42 KOG0031 Myosin regulatory ligh 98.5 2E-06 4.4E-11 57.4 8.9 61 39-106 32-92 (171)
43 KOG4223 Reticulocalbin, calume 98.5 5.2E-07 1.1E-11 66.5 6.7 95 7-104 202-303 (325)
44 PF12763 EF-hand_4: Cytoskelet 98.4 1.5E-06 3.2E-11 54.9 7.4 64 36-105 7-70 (104)
45 PF00036 EF-hand_1: EF hand; 98.4 3.3E-07 7.1E-12 44.6 3.3 26 80-105 2-27 (29)
46 PF00036 EF-hand_1: EF hand; 98.4 3.5E-07 7.5E-12 44.6 3.3 29 40-68 1-29 (29)
47 KOG0377 Protein serine/threoni 98.4 6.6E-06 1.4E-10 63.3 10.3 67 40-106 548-615 (631)
48 KOG0034 Ca2+/calmodulin-depend 98.4 1.9E-05 4.1E-10 54.8 11.9 95 7-109 35-135 (187)
49 KOG0036 Predicted mitochondria 98.3 1.8E-05 3.8E-10 60.4 12.1 103 3-113 12-117 (463)
50 PF13405 EF-hand_6: EF-hand do 98.3 9.5E-07 2.1E-11 43.5 3.4 30 40-69 1-31 (31)
51 KOG4223 Reticulocalbin, calume 98.3 3.1E-06 6.8E-11 62.4 7.1 111 6-120 114-240 (325)
52 PF14788 EF-hand_10: EF hand; 98.2 5E-06 1.1E-10 45.5 5.2 50 55-107 1-50 (51)
53 cd00051 EFh EF-hand, calcium b 98.1 2.2E-05 4.8E-10 43.2 6.9 58 7-65 2-62 (63)
54 cd05022 S-100A13 S-100A13: S-1 98.1 2.3E-05 5E-10 48.1 7.0 65 5-69 8-77 (89)
55 PRK12309 transaldolase/EF-hand 98.0 2.5E-05 5.5E-10 59.9 7.5 58 33-106 328-385 (391)
56 smart00027 EH Eps15 homology d 97.9 9.2E-05 2E-09 45.8 7.7 61 5-68 10-73 (96)
57 cd00213 S-100 S-100: S-100 dom 97.9 5.2E-05 1.1E-09 46.0 6.5 66 4-69 7-81 (88)
58 cd00052 EH Eps15 homology doma 97.9 0.0001 2.2E-09 42.0 7.3 58 8-68 2-62 (67)
59 KOG4666 Predicted phosphate ac 97.9 3E-05 6.5E-10 57.6 5.8 98 5-106 259-359 (412)
60 KOG0751 Mitochondrial aspartat 97.9 4.2E-05 9E-10 59.7 6.7 58 10-70 79-139 (694)
61 cd05026 S-100Z S-100Z: S-100Z 97.9 0.00013 2.8E-09 45.0 7.7 65 5-69 10-83 (93)
62 cd05027 S-100B S-100B: S-100B 97.9 0.00016 3.4E-09 44.2 7.7 65 5-69 8-81 (88)
63 PF13202 EF-hand_5: EF hand; P 97.9 2.1E-05 4.5E-10 36.8 2.8 23 42-64 2-24 (25)
64 PF13833 EF-hand_8: EF-hand do 97.8 9.8E-05 2.1E-09 40.6 6.0 46 21-67 7-53 (54)
65 KOG2643 Ca2+ binding protein, 97.8 1.3E-05 2.8E-10 61.5 2.5 92 17-111 211-319 (489)
66 cd05029 S-100A6 S-100A6: S-100 97.8 0.00028 6.1E-09 43.1 7.7 65 5-69 10-81 (88)
67 cd05031 S-100A10_like S-100A10 97.8 0.0002 4.3E-09 44.1 7.1 65 5-69 8-81 (94)
68 PF14658 EF-hand_9: EF-hand do 97.8 0.00013 2.8E-09 42.2 5.7 59 9-67 2-64 (66)
69 cd00252 SPARC_EC SPARC_EC; ext 97.7 0.00021 4.6E-09 45.9 7.1 56 5-65 48-106 (116)
70 PF13202 EF-hand_5: EF hand; P 97.7 4.3E-05 9.3E-10 35.8 2.9 25 80-104 1-25 (25)
71 cd05025 S-100A1 S-100A1: S-100 97.7 0.0004 8.7E-09 42.5 7.7 65 5-69 9-82 (92)
72 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.8E-05 3.9E-10 50.7 1.7 64 35-103 50-113 (113)
73 cd05023 S-100A11 S-100A11: S-1 97.6 0.00064 1.4E-08 41.7 7.7 65 5-69 9-82 (89)
74 KOG0040 Ca2+-binding actin-bun 97.6 0.00046 9.9E-09 60.0 8.3 69 39-108 2253-2326(2399)
75 KOG0046 Ca2+-binding actin-bun 97.5 0.00041 9E-09 54.5 7.2 69 39-108 19-87 (627)
76 PF13405 EF-hand_6: EF-hand do 97.5 0.00016 3.5E-09 35.3 3.3 28 79-106 1-28 (31)
77 KOG2643 Ca2+ binding protein, 97.5 0.00022 4.7E-09 54.9 5.4 92 7-106 359-453 (489)
78 KOG4251 Calcium binding protei 97.4 0.00016 3.4E-09 52.1 2.9 70 37-106 99-168 (362)
79 cd05030 calgranulins Calgranul 97.3 0.0022 4.8E-08 39.0 6.8 65 5-69 8-81 (88)
80 KOG0377 Protein serine/threoni 97.1 0.003 6.5E-08 49.1 7.2 66 4-69 546-617 (631)
81 smart00054 EFh EF-hand, calciu 97.0 0.00088 1.9E-08 30.7 2.8 25 42-66 3-27 (29)
82 PRK12309 transaldolase/EF-hand 97.0 0.0026 5.7E-08 49.0 6.4 50 5-68 334-386 (391)
83 KOG2562 Protein phosphatase 2 97.0 0.0053 1.1E-07 47.8 7.7 93 7-102 313-420 (493)
84 smart00054 EFh EF-hand, calciu 96.9 0.0014 3.1E-08 30.0 2.9 27 80-106 2-28 (29)
85 PF09279 EF-hand_like: Phospho 96.9 0.0034 7.3E-08 37.6 5.2 68 40-109 1-72 (83)
86 KOG4251 Calcium binding protei 96.9 0.0025 5.5E-08 46.0 5.0 93 7-102 238-341 (362)
87 KOG1029 Endocytic adaptor prot 96.8 0.0026 5.7E-08 52.3 4.9 65 36-105 192-256 (1118)
88 KOG4065 Uncharacterized conser 96.6 0.011 2.4E-07 37.9 5.9 62 42-103 70-142 (144)
89 cd05024 S-100A10 S-100A10: A s 96.3 0.058 1.2E-06 33.2 7.8 64 6-69 9-78 (91)
90 KOG0040 Ca2+-binding actin-bun 96.1 0.045 9.7E-07 48.4 8.7 92 6-99 2254-2354(2399)
91 PF14788 EF-hand_10: EF hand; 95.9 0.047 1E-06 29.9 5.3 33 36-68 18-50 (51)
92 KOG0041 Predicted Ca2+-binding 95.7 0.26 5.7E-06 34.8 9.8 94 5-101 99-198 (244)
93 KOG3555 Ca2+-binding proteogly 95.6 0.029 6.4E-07 42.4 5.2 69 36-111 247-315 (434)
94 KOG1955 Ral-GTPase effector RA 95.5 0.037 8E-07 43.8 5.5 62 39-105 231-292 (737)
95 KOG2562 Protein phosphatase 2 95.5 0.044 9.4E-07 42.9 5.9 57 45-107 284-344 (493)
96 KOG0038 Ca2+-binding kinase in 95.4 0.078 1.7E-06 35.6 5.9 85 35-125 70-157 (189)
97 PF12763 EF-hand_4: Cytoskelet 94.7 0.23 5.1E-06 31.2 6.5 59 6-68 11-72 (104)
98 KOG4578 Uncharacterized conser 94.3 0.039 8.5E-07 41.5 2.6 64 40-106 334-398 (421)
99 KOG0751 Mitochondrial aspartat 94.2 0.55 1.2E-05 37.5 8.7 84 21-109 55-139 (694)
100 PF08726 EFhand_Ca_insen: Ca2+ 93.9 0.025 5.5E-07 33.0 0.8 55 38-103 5-66 (69)
101 PF05042 Caleosin: Caleosin re 93.8 0.7 1.5E-05 31.7 7.7 35 75-109 93-127 (174)
102 KOG2243 Ca2+ release channel ( 93.5 0.17 3.6E-06 45.0 5.1 60 43-106 4061-4120(5019)
103 PF05517 p25-alpha: p25-alpha 93.4 0.61 1.3E-05 31.3 7.0 63 45-107 8-70 (154)
104 PF10591 SPARC_Ca_bdg: Secrete 92.8 0.061 1.3E-06 34.3 1.3 55 6-63 55-112 (113)
105 KOG0169 Phosphoinositide-speci 92.7 0.53 1.1E-05 39.1 6.7 61 8-69 139-202 (746)
106 KOG0042 Glycerol-3-phosphate d 92.7 0.24 5.2E-06 40.0 4.7 70 39-111 593-662 (680)
107 KOG4347 GTPase-activating prot 92.2 0.33 7.2E-06 39.6 5.0 75 21-99 537-611 (671)
108 KOG0169 Phosphoinositide-speci 92.2 1.4 3.1E-05 36.6 8.6 71 37-110 134-204 (746)
109 KOG1265 Phospholipase C [Lipid 91.9 2.5 5.4E-05 36.2 9.7 83 21-107 207-300 (1189)
110 PLN02952 phosphoinositide phos 91.7 3.1 6.7E-05 34.1 10.0 84 21-106 19-110 (599)
111 TIGR01848 PHA_reg_PhaR polyhyd 91.3 1.8 4E-05 27.3 6.6 76 46-124 10-95 (107)
112 KOG1029 Endocytic adaptor prot 90.4 1.2 2.7E-05 37.4 6.6 59 41-105 18-76 (1118)
113 PF09279 EF-hand_like: Phospho 89.6 1.4 3.1E-05 26.0 5.1 64 6-69 1-71 (83)
114 KOG4578 Uncharacterized conser 89.6 0.41 8.9E-06 36.2 3.1 55 10-67 338-398 (421)
115 KOG3866 DNA-binding protein of 88.8 1.1 2.3E-05 33.9 4.8 64 42-107 247-325 (442)
116 KOG0998 Synaptic vesicle prote 87.8 0.23 4.9E-06 42.1 0.9 65 37-106 281-345 (847)
117 PF11116 DUF2624: Protein of u 86.7 5.2 0.00011 24.2 7.5 70 54-126 13-82 (85)
118 PF08976 DUF1880: Domain of un 85.6 0.92 2E-05 29.1 2.6 32 74-105 3-34 (118)
119 KOG0035 Ca2+-binding actin-bun 85.6 5.9 0.00013 33.9 7.8 69 39-110 747-820 (890)
120 KOG4666 Predicted phosphate ac 84.8 3.1 6.7E-05 31.7 5.4 64 39-105 259-323 (412)
121 KOG3449 60S acidic ribosomal p 81.1 12 0.00025 23.9 6.4 55 41-103 3-57 (112)
122 PLN02230 phosphoinositide phos 78.4 15 0.00033 30.2 7.6 71 35-106 25-102 (598)
123 PF05042 Caleosin: Caleosin re 77.8 15 0.00032 25.4 6.3 62 39-104 96-164 (174)
124 PLN02222 phosphoinositide phos 77.6 13 0.00028 30.5 7.0 67 37-106 23-90 (581)
125 PLN02228 Phosphoinositide phos 77.0 18 0.00038 29.7 7.6 70 35-107 20-93 (567)
126 PF09069 EF-hand_3: EF-hand; 74.6 17 0.00037 22.2 8.2 67 38-107 2-76 (90)
127 KOG3555 Ca2+-binding proteogly 74.3 5.8 0.00013 30.4 4.0 59 6-69 251-312 (434)
128 KOG4347 GTPase-activating prot 71.7 6.5 0.00014 32.4 3.9 54 6-61 556-612 (671)
129 cd07313 terB_like_2 tellurium 70.0 8.5 0.00018 23.5 3.5 55 52-107 12-66 (104)
130 KOG2871 Uncharacterized conser 68.9 5.8 0.00013 30.7 3.0 64 36-102 306-370 (449)
131 PF06648 DUF1160: Protein of u 68.0 23 0.0005 23.0 5.2 83 35-126 33-118 (122)
132 KOG1707 Predicted Ras related/ 67.4 12 0.00025 30.8 4.5 61 39-105 315-376 (625)
133 PF12174 RST: RCD1-SRO-TAF4 (R 64.7 7.2 0.00016 22.7 2.2 46 55-106 8-53 (70)
134 PF07879 PHB_acc_N: PHB/PHA ac 63.0 14 0.0003 21.2 3.1 38 46-86 10-57 (64)
135 KOG1955 Ral-GTPase effector RA 62.8 13 0.00028 30.1 3.9 33 35-67 261-293 (737)
136 smart00222 Sec7 Sec7 domain. D 58.5 58 0.0013 22.4 9.5 40 87-127 144-183 (187)
137 KOG0046 Ca2+-binding actin-bun 58.4 63 0.0014 26.5 7.0 62 6-68 20-86 (627)
138 cd00171 Sec7 Sec7 domain; Doma 58.3 58 0.0013 22.4 8.5 40 87-127 142-181 (185)
139 KOG1707 Predicted Ras related/ 58.3 79 0.0017 26.2 7.6 27 80-106 317-343 (625)
140 PF07308 DUF1456: Protein of u 57.5 35 0.00076 19.6 5.4 27 59-88 17-43 (68)
141 PTZ00373 60S Acidic ribosomal 56.9 49 0.0011 21.1 5.5 54 41-102 5-58 (112)
142 PLN02223 phosphoinositide phos 56.6 65 0.0014 26.3 6.9 69 35-106 12-92 (537)
143 KOG4065 Uncharacterized conser 56.4 35 0.00076 22.1 4.4 54 74-127 62-123 (144)
144 PF08461 HTH_12: Ribonuclease 54.4 19 0.00042 20.5 2.8 38 51-91 9-46 (66)
145 PF00404 Dockerin_1: Dockerin 54.2 20 0.00043 15.7 2.6 13 50-62 2-14 (21)
146 PLN02952 phosphoinositide phos 53.5 56 0.0012 27.1 6.2 54 52-107 13-66 (599)
147 KOG0869 CCAAT-binding factor, 52.3 52 0.0011 22.4 4.9 22 49-70 80-101 (168)
148 KOG1954 Endocytosis/signaling 47.8 33 0.00071 27.0 3.9 47 52-103 456-502 (532)
149 PF09068 EF-hand_2: EF hand; 46.0 28 0.0006 22.6 2.9 27 41-67 99-125 (127)
150 PF03672 UPF0154: Uncharacteri 45.3 59 0.0013 18.6 3.9 33 52-87 28-60 (64)
151 KOG0035 Ca2+-binding actin-bun 44.7 1.5E+02 0.0032 26.0 7.4 94 5-102 747-848 (890)
152 cd08330 CARD_ASC_NALP1 Caspase 43.9 53 0.0011 19.5 3.7 53 52-112 26-78 (82)
153 TIGR01639 P_fal_TIGR01639 Plas 43.1 60 0.0013 18.1 3.8 31 54-87 8-38 (61)
154 cd05833 Ribosomal_P2 Ribosomal 42.7 87 0.0019 19.8 5.5 57 41-105 3-59 (109)
155 KOG4004 Matricellular protein 42.4 10 0.00022 27.0 0.4 50 51-105 200-249 (259)
156 PRK00523 hypothetical protein; 42.2 71 0.0015 18.7 3.9 41 43-87 28-68 (72)
157 PF15565 Imm16: Immunity prote 42.2 88 0.0019 19.7 5.5 26 98-123 63-89 (106)
158 COG4103 Uncharacterized protei 42.1 81 0.0018 21.1 4.6 60 42-107 33-95 (148)
159 PF13075 DUF3939: Protein of u 42.1 7.1 0.00015 25.8 -0.3 66 55-127 9-84 (140)
160 TIGR03573 WbuX N-acetyl sugar 40.5 92 0.002 23.6 5.4 14 93-106 301-314 (343)
161 PF02761 Cbl_N2: CBL proto-onc 40.4 85 0.0018 19.0 5.7 64 52-119 19-82 (85)
162 PF10398 DUF2443: Protein of u 40.3 79 0.0017 18.6 4.4 44 76-126 15-58 (79)
163 PF12875 DUF3826: Protein of u 39.1 46 0.00099 23.2 3.2 55 64-122 86-140 (188)
164 PF01023 S_100: S-100/ICaBP ty 37.7 63 0.0014 16.8 3.3 27 41-67 8-36 (44)
165 KOG0039 Ferric reductase, NADH 35.7 1E+02 0.0022 25.7 5.3 74 32-106 11-89 (646)
166 KOG0998 Synaptic vesicle prote 35.5 26 0.00055 30.2 1.8 63 39-106 11-73 (847)
167 PF03395 Pox_P4A: Poxvirus P4A 35.4 95 0.0021 26.9 5.0 101 20-125 468-579 (888)
168 PF01885 PTS_2-RNA: RNA 2'-pho 35.1 73 0.0016 22.1 3.8 35 49-86 26-60 (186)
169 COG2979 Uncharacterized protei 35.1 63 0.0014 23.1 3.4 44 80-125 114-158 (225)
170 PF03979 Sigma70_r1_1: Sigma-7 35.0 37 0.00081 20.0 2.0 31 52-87 18-48 (82)
171 cd08315 Death_TRAILR_DR4_DR5 D 34.6 1.1E+02 0.0024 18.7 5.2 40 38-86 3-42 (96)
172 PF09336 Vps4_C: Vps4 C termin 33.3 60 0.0013 18.2 2.6 25 55-82 29-53 (62)
173 PF14164 YqzH: YqzH-like prote 33.2 87 0.0019 17.9 3.2 30 39-68 8-38 (64)
174 COG3763 Uncharacterized protei 32.6 1.1E+02 0.0023 17.9 4.0 32 53-87 36-67 (71)
175 COG5562 Phage envelope protein 31.8 37 0.00079 22.5 1.7 24 84-107 78-101 (137)
176 PLN00138 large subunit ribosom 31.8 1.4E+02 0.003 19.0 5.5 52 43-102 5-56 (113)
177 PRK00819 RNA 2'-phosphotransfe 31.7 1.2E+02 0.0026 21.0 4.3 34 50-86 28-61 (179)
178 KOG0506 Glutaminase (contains 31.2 1.9E+02 0.0041 23.6 5.7 61 43-106 90-158 (622)
179 cd05167 PI4Kc_III_alpha Phosph 31.1 2.3E+02 0.0051 21.4 7.5 75 8-85 208-285 (311)
180 cd07316 terB_like_DjlA N-termi 30.8 1.2E+02 0.0027 18.1 6.0 53 52-106 12-64 (106)
181 PF05099 TerB: Tellurite resis 30.7 26 0.00057 22.4 1.0 54 51-106 35-89 (140)
182 PRK01844 hypothetical protein; 30.6 1.2E+02 0.0026 17.8 3.9 33 52-87 35-67 (72)
183 KOG4286 Dystrophin-like protei 30.6 2.8E+02 0.006 24.1 6.8 92 10-105 475-579 (966)
184 PF09373 PMBR: Pseudomurein-bi 29.4 60 0.0013 15.6 1.9 16 92-107 2-17 (33)
185 PF06384 ICAT: Beta-catenin-in 29.1 79 0.0017 18.8 2.7 22 59-83 20-41 (78)
186 KOG4301 Beta-dystrobrevin [Cyt 28.5 92 0.002 24.1 3.6 58 45-106 116-173 (434)
187 KOG2301 Voltage-gated Ca2+ cha 26.7 45 0.00097 30.9 1.9 69 36-108 1414-1486(1592)
188 PRK09430 djlA Dna-J like membr 26.6 2.6E+02 0.0057 20.5 6.6 53 51-109 67-123 (267)
189 PF12419 DUF3670: SNF2 Helicas 26.5 1.3E+02 0.0028 19.7 3.7 51 52-102 80-137 (141)
190 PF07499 RuvA_C: RuvA, C-termi 26.4 1.1E+02 0.0023 15.9 4.1 39 58-103 3-41 (47)
191 PF10163 EnY2: Transcription f 25.5 1.1E+02 0.0025 18.2 3.1 48 21-68 16-64 (86)
192 KOG0713 Molecular chaperone (D 25.3 1.5E+02 0.0032 22.8 4.1 58 23-86 17-80 (336)
193 PLN03076 ARF guanine nucleotid 25.0 6.1E+02 0.013 24.4 8.5 38 88-126 756-793 (1780)
194 PF12631 GTPase_Cys_C: Catalyt 24.8 1.5E+02 0.0032 17.0 3.4 49 39-87 23-72 (73)
195 PF08414 NADPH_Ox: Respiratory 24.6 1.1E+02 0.0024 19.1 2.9 62 37-107 28-93 (100)
196 KOG0871 Class 2 transcription 23.8 1.9E+02 0.0041 19.5 4.0 26 45-70 56-81 (156)
197 cd08332 CARD_CASP2 Caspase act 23.0 1.7E+02 0.0038 17.6 3.6 51 52-110 31-81 (90)
198 KOG4403 Cell surface glycoprot 22.4 3.7E+02 0.0081 21.7 5.9 76 39-121 68-146 (575)
199 cd07176 terB tellurite resista 22.2 1.2E+02 0.0027 18.1 2.9 17 52-68 15-31 (111)
200 cd08316 Death_FAS_TNFRSF6 Deat 21.8 1.9E+02 0.004 17.9 3.5 25 55-84 17-41 (97)
201 PRK14981 DNA-directed RNA poly 21.3 2E+02 0.0044 18.1 3.7 12 75-86 79-90 (112)
202 cd08326 CARD_CASP9 Caspase act 20.7 2E+02 0.0044 17.1 3.6 52 52-111 27-78 (84)
203 TIGR02675 tape_meas_nterm tape 20.5 1.9E+02 0.0041 16.7 3.2 16 52-67 27-42 (75)
204 PF05788 Orbi_VP1: Orbivirus R 20.4 1.1E+02 0.0024 27.3 2.9 40 49-91 1131-1170(1301)
205 cd08819 CARD_MDA5_2 Caspase ac 20.2 2.2E+02 0.0048 17.3 5.7 53 52-110 30-82 (88)
206 PF11829 DUF3349: Protein of u 20.1 2.3E+02 0.005 17.5 5.0 49 36-86 36-84 (96)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=114.81 Aligned_cols=100 Identities=29% Similarity=0.480 Sum_probs=93.3
Q ss_pred cchhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH
Q 033062 3 KSNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED 79 (128)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e 79 (128)
+...+.+|++.+|. ++| |.+|++++..........+++..+|+.||.+++|+|+..+|..++..+| ..+++++
T Consensus 54 s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg---e~~~dee 129 (160)
T COG5126 54 SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG---ERLSDEE 129 (160)
T ss_pred cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc---ccCCHHH
Confidence 45678999999998 666 9999999999887788899999999999999999999999999999999 8999999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
++.++..++.+++|.|+|++|+..+..
T Consensus 130 v~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 130 VEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999999999998864
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-17 Score=111.69 Aligned_cols=101 Identities=28% Similarity=0.461 Sum_probs=91.6
Q ss_pred cchhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcCh----HHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC
Q 033062 3 KSNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESF----VSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM 75 (128)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~ 75 (128)
+..++..+++.+|.+++| |.+|+.++.+....... ...++.+|+.||++++|+|+.+||+.++..+| ...
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg---~~~ 118 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLG---EKL 118 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC---CcC
Confidence 457889999999999999 99999999876543333 35899999999999999999999999999999 899
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 76 TKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 76 ~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+.+++..+++..|.++||.|+|.+|+.+|..
T Consensus 119 ~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 119 TDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 9999999999999999999999999999875
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.9e-16 Score=102.23 Aligned_cols=102 Identities=32% Similarity=0.502 Sum_probs=96.1
Q ss_pred cchhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH
Q 033062 3 KSNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED 79 (128)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e 79 (128)
+..++.+|+..+|++++| |.+|+..+...+....+.+++..+|+.+|.+++|.|+..+|+.+...+| +++++++
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg---enltD~E 143 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG---ENLTDEE 143 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC---ccccHHH
Confidence 457889999999999999 9999999988887778999999999999999999999999999999999 8999999
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
++.++..+|.+++|-|+-+||..+|.+.
T Consensus 144 l~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 144 LMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999998764
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.59 E-value=4.8e-14 Score=93.13 Aligned_cols=98 Identities=28% Similarity=0.530 Sum_probs=79.5
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
..+..+++.+|.+++| |.+|+.++............+..+|+.+|.+++|.|+.+++..++...| ..++..++.
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~ 123 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG---EKLTDEEVD 123 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC---CCCCHHHHH
Confidence 3567888888888888 8888887765544445556788888888888889999999988888888 678888888
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHH
Q 033062 82 AMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
.++..+|.+++|.|+|.||+.++.
T Consensus 124 ~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 124 EMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHhcCCCCCCcCcHHHHHHHHh
Confidence 888888888888899998888775
No 5
>PTZ00183 centrin; Provisional
Probab=99.59 E-value=4.9e-14 Score=94.19 Aligned_cols=99 Identities=29% Similarity=0.524 Sum_probs=77.8
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
..+..++..+|.+++| |.+|+.++............+..+|+.+|.+++|.|+..+|..++..+| ..++..++.
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~l~~~~~~ 129 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG---ETITDEELQ 129 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC---CCCCHHHHH
Confidence 3567788888888888 8888877665444445556788888888888888888888888888888 678888888
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 82 AMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
.++..+|.+++|.|+|++|..++.+
T Consensus 130 ~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 130 EMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 8888888888888888888888765
No 6
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.49 E-value=6.3e-13 Score=91.89 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=85.4
Q ss_pred HHHHHHhhCCCCCC----HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCC--HHH-
Q 033062 7 SSRTAKGTTSTGSE----YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMT--KED- 79 (128)
Q Consensus 7 ~~~~~~~~d~~~~g----~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~--~~e- 79 (128)
..+++..++++++| |.+|+..++..........++.-+|++||.+++|.|+.+++..++..+-- ...+ ++.
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~--~~~~~~~e~~ 145 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG--ENDDMSDEQL 145 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc--cCCcchHHHH
Confidence 47899999998888 99999999887776667679999999999999999999999999998631 3344 433
Q ss_pred ---HHHHHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 80 ---AEAMVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 80 ---~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
++.++.++|.++||+|+++||+.++.+. |.+
T Consensus 146 ~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~-P~~ 179 (187)
T KOG0034|consen 146 EDIVDKTFEEADTDGDGKISFEEFCKVVEKQ-PDL 179 (187)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC-ccH
Confidence 5667889999999999999999999864 444
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.47 E-value=9.5e-13 Score=91.63 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=86.1
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
+.+..|+..+|.+.+| |.||..+|... +.++.+|+.+|.|++|.|+..||+.+|..+| -.+++.-.+
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G---y~Lspq~~~ 163 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG---YRLSPQFYN 163 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC---cCCCHHHHH
Confidence 4567899999999999 99999999765 6799999999999999999999999999999 699999999
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 82 AMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
.+++.+|..++|.|.|++|+.++..+
T Consensus 164 ~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 164 LLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHhccccCCceeHHHHHHHHHHH
Confidence 99999998889999999999999865
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=3.2e-13 Score=83.04 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=61.6
Q ss_pred HHHHHHhhhhcC-CCCCccCHHHHHHHHHh-hCCCCCCCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLAD-RDSGLITPGSLRQNSAL-LGMGMDGMTK-EDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D~-~~~g~I~~~el~~~l~~-~g~~~~~~~~-~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|+.||. +++|+|+..||+.++.. +| ..++. ++++.+++.+|.|+||.|+|+||+.+|.+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg---~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP---HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh---hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999 99999999999999999 88 67887 899999999999999999999999999875
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.43 E-value=3.6e-12 Score=84.43 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=87.6
Q ss_pred cchhHHHHHHhhCCCCCCHHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHH
Q 033062 3 KSNNSSRTAKGTTSTGSEYEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEA 82 (128)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~ 82 (128)
+..++..|++....--+ |..||+++...++...+++.+..+|+.||++++|.|..+.|+.+|.+.| ..++++++..
T Consensus 66 ~d~elDaM~~Ea~gPIN-ft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g---Dr~~~eEV~~ 141 (171)
T KOG0031|consen 66 SDEELDAMMKEAPGPIN-FTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG---DRFTDEEVDE 141 (171)
T ss_pred CHHHHHHHHHhCCCCee-HHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc---ccCCHHHHHH
Confidence 44566667665532111 9999999999888889999999999999999999999999999999999 8999999999
Q ss_pred HHHhcCCCCCCCccHHHHHHHHH
Q 033062 83 MVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 83 l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
++..+..+..|.|+|.+|++++.
T Consensus 142 m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 142 MYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999987
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=8e-13 Score=76.61 Aligned_cols=62 Identities=32% Similarity=0.517 Sum_probs=54.4
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH----HHHHHHhcCCCCCCCccHHHHHHHH
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED----AEAMVREGDLDGDGALNETEFCILM 104 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e----~~~l~~~~d~~~~g~i~~~eF~~~l 104 (128)
+++.+|+.+|.+++|+|+.+||..++..++ ...+... ++.++..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG---RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT---SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999999 5665544 4556999999999999999999875
No 11
>PTZ00183 centrin; Provisional
Probab=99.39 E-value=3.2e-11 Score=80.51 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=95.7
Q ss_pred chhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHH
Q 033062 4 SNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDA 80 (128)
Q Consensus 4 ~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~ 80 (128)
...+.+.|..+|++++| +.+|..++... ........+..+|..+|.+++|.|+..++..++..... .......+
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~l 92 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG--ERDPREEI 92 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc--CCCcHHHH
Confidence 35678899999999999 88888887643 33345577899999999999999999999998876421 35667789
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALD 124 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 124 (128)
+.+|+.+|.+++|.|+..+|..++....+.+.+.....++..+|
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d 136 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEAD 136 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999998777776666666666654
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.38 E-value=5.9e-12 Score=87.27 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh----CC----CCCC
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL----GM----GMDG 74 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~----g~----~~~~ 74 (128)
-...+|+.+|.+++| |.+|+..++...+ ...++++..+|+++|.+++|+|+..|+..++..+ |- ....
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 357899999999999 8999988866544 6788999999999999999999999999988763 20 0011
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 75 MTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 75 ~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
-+.+-+..+|+.+|.|+||.|+++||......
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 13445788999999999999999999988753
No 13
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.37 E-value=6e-12 Score=82.90 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=84.9
Q ss_pred HHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHH----
Q 033062 8 SRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDA---- 80 (128)
Q Consensus 8 ~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~---- 80 (128)
.+++..+..+|.| |.+|+.+.+......+.+-++.-+|+++|-|+++.|...+|...+.++-- ..++.+++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr--~eLs~eEv~~i~ 151 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR--DELSDEEVELIC 151 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh--ccCCHHHHHHHH
Confidence 4788999999999 99999999877665666678888999999999999999999999998753 56888875
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
++++.++|.++||++++.+|..++.+.
T Consensus 152 ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 152 EKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 556778999999999999999999874
No 14
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.36 E-value=7.2e-12 Score=76.93 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=60.0
Q ss_pred HHHHHHhhhhc-CCCCC-ccCHHHHHHHHHh-----hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 39 SELCGGFRLLA-DRDSG-LITPGSLRQNSAL-----LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 39 ~~~~~~F~~~D-~~~~g-~I~~~el~~~l~~-----~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
..+..+|+.|| ++++| .|+..+|+.+|+. +| ...++++++.+++.+|.|++|+|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg---~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE---EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc---CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56889999998 79999 5999999999999 88 6789999999999999999999999999999875
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=5.6e-11 Score=79.65 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=90.1
Q ss_pred chhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC-----
Q 033062 4 SNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM----- 75 (128)
Q Consensus 4 ~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~----- 75 (128)
..++.+.|+.+|.+++| -.++..++.. +.......++..++..+|.+++|.|+..+|..++...+ ...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~---~~~~~~~~ 82 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRS-LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG---EEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh---cccccccc
Confidence 46788999999999999 6777777755 45567889999999999999999999999999999876 222
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchh
Q 033062 76 TKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQ 113 (128)
Q Consensus 76 ~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~ 113 (128)
+.+++...|+.+|.+++|.|+..|+.++|...+..+..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH
Confidence 34589999999999999999999999999988776643
No 16
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.30 E-value=2.3e-11 Score=79.35 Aligned_cols=97 Identities=19% Similarity=0.367 Sum_probs=78.4
Q ss_pred hhHHHHHHhhCCCCCC-----HHHHHHHHHhhcCC--cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCH
Q 033062 5 NNSSRTAKGTTSTGSE-----YEDLLPVMAEKLDV--ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTK 77 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g-----~~eFl~~~~~~~~~--~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~ 77 (128)
.++.+.+...+++.-+ |+.|+.+.+...++ ....+.+...++.||++++|.|...||+++|.++| +.+++
T Consensus 47 aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG---ekl~e 123 (152)
T KOG0030|consen 47 AEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG---EKLTE 123 (152)
T ss_pred HHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH---hhccH
Confidence 3455555555555322 99999888765433 34457889999999999999999999999999999 89999
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 78 EDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 78 ~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
++++.++.-. .|++|.|+|+.|++.+.
T Consensus 124 eEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 124 EEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 9999988765 47889999999998875
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=1.6e-10 Score=76.18 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=91.8
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
..+.+.|..+|.+++| +.+|..++... ........+..+|+.+|.+++|.|+.+++..++....- .......+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~ 87 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK--DTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc--CCcHHHHHH
Confidence 4567899999999999 88888877543 33445678899999999999999999999998876531 234556788
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 033062 82 AMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALD 124 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 124 (128)
.+|..+|.+++|.|+..+|..++....+++.+.....+...+|
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcC
Confidence 9999999999999999999999988776665544444444443
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.26 E-value=3.1e-11 Score=74.86 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhcC-CC-CCccCHHHHHHHHHh-----hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcC
Q 033062 38 VSELCGGFRLLAD-RD-SGLITPGSLRQNSAL-----LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLS 108 (128)
Q Consensus 38 ~~~~~~~F~~~D~-~~-~g~I~~~el~~~l~~-----~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 108 (128)
...+..+|..||. ++ +|.|+..||+.+++. +| ..++..+++.++..+|.+++|.|+|++|+.++.+.+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg---~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK---NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh---ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678899999997 87 699999999999986 46 577899999999999999999999999999998653
No 19
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.23 E-value=1.7e-10 Score=86.93 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=84.1
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
+-...+++.+|.|.+| |.+|...+. ..+.++..+|..+|.+++|.|..+|+...|+.+| .++++++++
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g---i~l~de~~~ 121 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG---IQLSDEKAA 121 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhC---CccCHHHHH
Confidence 3456789999999999 999988874 3557899999999999999999999999999999 799999999
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 82 AMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
++++.+|+++++.|+++||...+.-
T Consensus 122 k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 122 KFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHhccCCCeeeccHHHHhhhhc
Confidence 9999999999999999999998764
No 20
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.21 E-value=1.1e-10 Score=72.39 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=56.9
Q ss_pred HHHHHHhhhhc-CCCCC-ccCHHHHHHHHHhh-CC-CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLA-DRDSG-LITPGSLRQNSALL-GM-GMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D-~~~~g-~I~~~el~~~l~~~-g~-~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|..|| ++++| .|+..||+.+++.. +- .....++.+++.++..+|.+++|.|+|+||+.++.++
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45778899999 78998 59999999999762 20 0024477899999999999999999999999999865
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.21 E-value=1.1e-10 Score=71.70 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=58.7
Q ss_pred HHHHHHhhhhcC-CC-CCccCHHHHHHHHHh---hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLAD-RD-SGLITPGSLRQNSAL---LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D~-~~-~g~I~~~el~~~l~~---~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|..++. ++ +|+|+.+||+.+++. +| ..++++++..+++..|.+++|+|+|+||+.++.++
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg---~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG---SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 456778999987 66 899999999999973 68 78999999999999999999999999999998864
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=1e-10 Score=72.22 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHhhhhc-CCCCC-ccCHHHHHHHHHh-hCC-CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLA-DRDSG-LITPGSLRQNSAL-LGM-GMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D-~~~~g-~I~~~el~~~l~~-~g~-~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..++.+|..|| .+++| .|+..||+.+++. +|. .+..++..+++.++..+|.+++|.|+|++|+.++.+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56899999997 99999 5999999999986 551 0024688899999999999999999999999998764
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=73.75 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=83.9
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
.++.+-|..+|++++| +.++.++++ .++...+...+..+|..+|. +.+.|+..+|..++....- ..-+.+++.
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~--~~~~~Eel~ 95 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK--RGDKEEELR 95 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc--cCCcHHHHH
Confidence 4567788888888888 888888876 45667777888888888888 8888999998888876441 456678888
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHhcCCCchh
Q 033062 82 AMVREGDLDGDGALNETEFCILMVRLSPGMMQ 113 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~ 113 (128)
..|+.+|.+++|.|+..+++.++...+..+.+
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d 127 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSD 127 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCH
Confidence 88999999999999999998888877766544
No 24
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.20 E-value=1e-10 Score=67.49 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=55.3
Q ss_pred HHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 42 CGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+.+|..+|++++|.|+.+|++.+++.+| .+.++++.++..++.+++|.|+|.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g-----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG-----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC-----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999999988 37888999999999999999999999998864
No 25
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.16 E-value=2.4e-10 Score=71.06 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=59.2
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
....+..+|..+|.+++|.|+.++++.+++..| ++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~-----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG-----LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC-----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 346789999999999999999999999999877 57889999999999999999999999988774
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.16 E-value=1.7e-10 Score=64.31 Aligned_cols=52 Identities=35% Similarity=0.530 Sum_probs=48.4
Q ss_pred CCCccCHHHHHHHHHhhCCCCCC-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 52 DSGLITPGSLRQNSALLGMGMDG-MTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~-~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
++|.|+.++|+.++..+| .. ++.+++..++..+|.+++|.|+|.||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g---~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG---IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT---SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC---CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998889 67 99999999999999999999999999999864
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.5e-09 Score=70.75 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=86.0
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHh-hCCCCCCCCHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSAL-LGMGMDGMTKEDA 80 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~-~g~~~~~~~~~e~ 80 (128)
.++..-|+.+|++++| +.++...+.. ..=.....++..+..-.|+++.|.|+.++|...+.. ++ ..-+.+++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmra-lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~---e~dt~eEi 108 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRA-LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG---ERDTKEEI 108 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh---ccCcHHHH
Confidence 4677889999999999 8887555533 232345577888899999999999999999998764 66 56699999
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
...|+.+|-+++|+||..+|+.+...+++.+
T Consensus 109 ~~afrl~D~D~~Gkis~~~lkrvakeLgenl 139 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNLKRVAKELGENL 139 (172)
T ss_pred HHHHHcccccCCCCcCHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999955
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=4.7e-10 Score=68.59 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhcC--CCCCccCHHHHHHHHHh-hCCCCCCC----CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 38 VSELCGGFRLLAD--RDSGLITPGSLRQNSAL-LGMGMDGM----TKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 38 ~~~~~~~F~~~D~--~~~g~I~~~el~~~l~~-~g~~~~~~----~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
...++.+|..+|. +++|.|+..+|..+++. +| ..+ +..++..++..+|.+++|.|+|++|+.++.+.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g---~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP---NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh---hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568889999999 89999999999999986 55 333 58899999999999999999999999998754
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=9.1e-10 Score=67.71 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHHHHhhh-hcCCCCC-ccCHHHHHHHHHhhCC--CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRL-LADRDSG-LITPGSLRQNSALLGM--GMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~-~D~~~~g-~I~~~el~~~l~~~g~--~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|.. +|++++| .|+.+||+.++..... .....++.+++.+++.+|.|+||.|+|+||+.++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567889988 7788876 9999999999987620 0035667899999999999999999999999998764
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=8.9e-10 Score=61.58 Aligned_cols=61 Identities=38% Similarity=0.652 Sum_probs=56.7
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILM 104 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l 104 (128)
+..+|..+|.+++|.|+..++..+++.++ ...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG---EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999999 78899999999999999999999999998865
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=99.03 E-value=1.3e-09 Score=62.84 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCC-CCccHHHHHHHHHh
Q 033062 43 GGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGD-GALNETEFCILMVR 106 (128)
Q Consensus 43 ~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~-g~i~~~eF~~~l~~ 106 (128)
.+|.+||+++.|.|....|..+|+.++. ..+++.+++.+...+|+++. |.|+++.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~--~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTG--RSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcC--CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999992 38899999999999999988 99999999999874
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=98.99 E-value=8.3e-09 Score=82.79 Aligned_cols=97 Identities=12% Similarity=0.214 Sum_probs=79.2
Q ss_pred hhHHHHHHhhCCCCCCHHHHHHHHHhhcC-CcChHHH---HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHH
Q 033062 5 NNSSRTAKGTTSTGSEYEDLLPVMAEKLD-VESFVSE---LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDA 80 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g~~eFl~~~~~~~~-~~~~~~~---~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~ 80 (128)
.++.+.|..+|++++|.. +..++.. +. ....+.+ +..+|+.+|.+++|.|+.+||..++..++ ...+++++
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrs-lG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg---~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVS-CSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG---NLVAANKK 217 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc---cCCCHHHH
Confidence 456778999999999932 3333322 22 1233333 78999999999999999999999999998 67889999
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
..+|..+|.|++|.|+++||..++..
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999999887
No 33
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.95 E-value=5e-09 Score=67.39 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=54.6
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
....+..+|..+|.|++|.|+.+||..+. ++ .....+..++..+|.|+||.||++||+.++.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~-----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD-----PNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc-----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 44678999999999999999999999876 33 34566788999999999999999999999943
No 34
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=1.8e-08 Score=70.03 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=81.7
Q ss_pred hhHHHHHHhhCCCC-CC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHH
Q 033062 5 NNSSRTAKGTTSTG-SE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDA 80 (128)
Q Consensus 5 ~~~~~~~~~~d~~~-~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~ 80 (128)
.++..+.+.+-.+. +| -.+|..+.+..........-...+|+.||.+++|.|+..|+..++..+. ....++.+
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~---rGt~eekl 102 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS---RGTLEEKL 102 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc---CCcHHHHh
Confidence 45667777776666 56 7779888887766455556667899999999999999999999998877 56777888
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
...|+.+|.|++|.|+++|+..++..
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHH
Confidence 88999999999999999999887764
No 35
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.87 E-value=1.2e-08 Score=62.49 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=56.1
Q ss_pred HHHHHHhhhhcCC--CCCccCHHHHHHHHH-hhCCCCCCCC----HHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLADR--DSGLITPGSLRQNSA-LLGMGMDGMT----KEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D~~--~~g~I~~~el~~~l~-~~g~~~~~~~----~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|..++.. .+|.|+.+||+.++. .+| ..++ +.++..++..+|.+++|.|+|++|+.++.+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g---~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP---NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh---HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567788888755 478999999999997 566 5566 8999999999999999999999999998754
No 36
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.81 E-value=2.1e-07 Score=65.17 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=91.4
Q ss_pred chhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHH
Q 033062 4 SNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDA 80 (128)
Q Consensus 4 ~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~ 80 (128)
..++...+..+|.+.+| -.|.......--...-..+.++.+..+||.+.+|.|.++||+.+...+. ..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~---------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN---------QW 126 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH---------HH
Confidence 35788999999999999 4444444332112223446788889999999999999999999998887 68
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDH 125 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (128)
+.+|+.+|+|++|+|+..|+...+...+..+.+..-+.+++-.|.
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~ 171 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR 171 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc
Confidence 899999999999999999999999999888877777777776653
No 37
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.73 E-value=5.8e-08 Score=67.28 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHH
Q 033062 21 YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEF 100 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF 100 (128)
|.+|.-+-.+. -..+..+|+.+|.+.||+|+..||+.+|..+| .+-|---+..+++..|.|.+|+|+|-||
T Consensus 87 yteF~eFsrkq------Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg---apQTHL~lK~mikeVded~dgklSfref 157 (244)
T KOG0041|consen 87 YTEFSEFSRKQ------IKDAESMFKQYDEDRDGFIDLMELKRMMEKLG---APQTHLGLKNMIKEVDEDFDGKLSFREF 157 (244)
T ss_pred hhhhhHHHHHH------HHHHHHHHHHhcccccccccHHHHHHHHHHhC---CchhhHHHHHHHHHhhcccccchhHHHH
Confidence 77775333322 24678899999999999999999999999999 5666667889999999999999999999
Q ss_pred HHHHHhcCCCc
Q 033062 101 CILMVRLSPGM 111 (128)
Q Consensus 101 ~~~l~~~~~~~ 111 (128)
.-+++...++-
T Consensus 158 lLIfrkaaagE 168 (244)
T KOG0041|consen 158 LLIFRKAAAGE 168 (244)
T ss_pred HHHHHHHhccc
Confidence 99988765543
No 38
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.64 E-value=1.6e-07 Score=54.02 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCCCC---HHHHHHHHHhhcC---CcChHHHHHHHhhhhcCCCCCccCHHHHHHHH
Q 033062 7 SSRTAKGTTSTGSE---YEDLLPVMAEKLD---VESFVSELCGGFRLLADRDSGLITPGSLRQNS 65 (128)
Q Consensus 7 ~~~~~~~~d~~~~g---~~eFl~~~~~~~~---~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l 65 (128)
+.++|+.+|++++| ..+|..++..... .......+..+|+.+|++++|.|+.+|+..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999 8999888876533 22344567778999999999999999998864
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.58 E-value=4.6e-07 Score=72.93 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=65.9
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH---HHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED---AEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDA 115 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e---~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~ 115 (128)
+++..+|..+|++++|.+ +..+++.+|. ..+++.+ ++.++..+|.+++|.|+++||+.++........+..
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~--~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSI--EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 678999999999999997 8889999992 2677766 789999999999999999999999997665444555
Q ss_pred HHHHHHHHh
Q 033062 116 EAWLQKALD 124 (128)
Q Consensus 116 ~~~~~~~~~ 124 (128)
-.+.+..+|
T Consensus 217 L~eaFk~fD 225 (644)
T PLN02964 217 KEELFKAAD 225 (644)
T ss_pred HHHHHHHhC
Confidence 566666665
No 40
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.57 E-value=2.7e-07 Score=60.51 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=62.0
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCC--CCCCccHHHHHHHHHhcC
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLD--GDGALNETEFCILMVRLS 108 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~--~~g~i~~~eF~~~l~~~~ 108 (128)
.+...+++.+|.+||..++|+|+..+.-.++|.+| .++|+.++.+.+..+..+ +-.+|+|++|+.++...+
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG---~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG---QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVA 79 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhc---CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999 799999999999887766 346799999998887653
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.53 E-value=1.2e-06 Score=53.83 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHh-----hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSAL-----LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~-----~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
..+..+|..+- .+.+.++..||+.++.+ +. ....+..++.+++..|.|+||.|+|.||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~---~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK---NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc---CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44667888886 45679999999999975 23 34567889999999999999999999999999865
No 42
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.48 E-value=2e-06 Score=57.36 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=50.1
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
++++.+|..+|.|++|.|..++|+..+.++| ...+++++..+++.. .|-|+|--|+.++..
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG---k~~~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLG---KIASDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 6899999999999999999999999999999 788999888877653 345666666666553
No 43
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.2e-07 Score=66.50 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCC---HHHHHHHHHhhcC-CcChHH---HHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH
Q 033062 7 SSRTAKGTTSTGSE---YEDLLPVMAEKLD-VESFVS---ELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED 79 (128)
Q Consensus 7 ~~~~~~~~d~~~~g---~~eFl~~~~~~~~-~~~~~~---~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e 79 (128)
|..-+..+|+|++| +.+|+.=+.+... ...++. +-..-+...|+|++|+++.+|++.++.-.+ ....+.+
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~---~d~A~~E 278 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE---QDHAKAE 278 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC---ccHHHHH
Confidence 46678889999999 8999876655432 112221 122345677999999999999999887766 4677889
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHH
Q 033062 80 AEAMVREGDLDGDGALNETEFCILM 104 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l 104 (128)
+..++...|.|+||++|++|-+.-.
T Consensus 279 A~hL~~eaD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 279 ARHLLHEADEDKDGKLSKEEILEHY 303 (325)
T ss_pred HHHHhhhhccCccccccHHHHhhCc
Confidence 9999999999999999999876543
No 44
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.45 E-value=1.5e-06 Score=54.91 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=56.2
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
.....+..+|+..++ ++|.|+.++...++...+ ++.+.+..|+...|.+++|+++++||+-+|+
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~-----L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG-----LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT-----SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC-----CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 345778899999885 689999999999999888 7889999999999999999999999988776
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=3.3e-07 Score=44.64 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=12.7
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
++.+|+.+|.|+||.|+++||+.++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34444455555555555555554443
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=3.5e-07 Score=44.56 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.7
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
++..+|+.+|+|++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46789999999999999999999998764
No 47
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.36 E-value=6.6e-06 Score=63.30 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=57.3
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCC-CCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSALLGMGM-DGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~-~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
.+..+|+.+|.|++|.|+.+||+.++.-++-++ ..++++++-++...+|.|+||+|++.||+.+++-
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 367789999999999999999999988654211 3578889999999999999999999999998874
No 48
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.36 E-value=1.9e-05 Score=54.82 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=74.7
Q ss_pred HHHHHHhhCCC-CCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCc-cCHHHHHHHHHhhCCCCCCCCHH-HH
Q 033062 7 SSRTAKGTTST-GSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGL-ITPGSLRQNSALLGMGMDGMTKE-DA 80 (128)
Q Consensus 7 ~~~~~~~~d~~-~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-I~~~el~~~l~~~g~~~~~~~~~-e~ 80 (128)
+...|..++.+ ++| .++|..+.....+ + -...+++.|+.+++|. |+++++...+.... ..-+.. .+
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N--p---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~---~~~~~~~Kl 106 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIPELALN--P---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFS---PKASKREKL 106 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHHHHhcC--c---HHHHHHHHHhccCCCCccCHHHHHHHHhhhc---CCccHHHHH
Confidence 34667788888 777 8999888744322 2 2456788888888888 99999999999887 444444 78
Q ss_pred HHHHHhcCCCCCCCccHHHHHHHHHhcCC
Q 033062 81 EAMVREGDLDGDGALNETEFCILMVRLSP 109 (128)
Q Consensus 81 ~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 109 (128)
+-.|+.+|.+++|.|+.+|+.+++.....
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 88999999999999999999999987544
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.8e-05 Score=60.36 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=77.4
Q ss_pred cchhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH
Q 033062 3 KSNNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED 79 (128)
Q Consensus 3 ~~~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e 79 (128)
+.-.+..+|+.+|.+++| ..+..........+....+-....|+.+|.|.+|.++..||++.+..-. .+
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E--------~~ 83 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE--------LE 83 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH--------HH
Confidence 445678899999999999 5554444444323234556667789999999999999999998875544 35
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchh
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVRLSPGMMQ 113 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~ 113 (128)
+..+|...|.++||+|...|.-+.+....-.+.+
T Consensus 84 l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 84 LYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred HHHHHhhhccccCCccCHHHHHHHHHHhCCccCH
Confidence 7788999999999999999988888876655533
No 50
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.31 E-value=9.5e-07 Score=43.52 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=24.9
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHH-hhC
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSA-LLG 69 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~-~~g 69 (128)
++..+|+.+|.+++|.|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999998 565
No 51
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3.1e-06 Score=62.45 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=75.5
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhc-------CCc--ChH----HHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKL-------DVE--SFV----SELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~-------~~~--~~~----~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
+..+-+..+|.+.+| +.+++....... ... ... .+-...|+.-|.|++|.++.+||..++.--.
T Consensus 114 ~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe 193 (325)
T KOG4223|consen 114 EAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE 193 (325)
T ss_pred HHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh
Confidence 445677788888888 777766554211 000 011 3345678888999999999999988775433
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHH
Q 033062 70 MGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQ 120 (128)
Q Consensus 70 ~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~ 120 (128)
. .-+....+...+...|+|+||+|+++||+.-|..... ...-+.|+.
T Consensus 194 ~--p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~--~~~epeWv~ 240 (325)
T KOG4223|consen 194 H--PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG--NEEEPEWVL 240 (325)
T ss_pred c--chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC--CCCCccccc
Confidence 1 2345566778888999999999999999999987543 133445543
No 52
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.22 E-value=5e-06 Score=45.48 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=41.2
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 55 LITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 55 ~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
+++..|++.+|+.++ ..+++..+..+|+.+|++++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~N---I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN---IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 367899999999999 68999999999999999999999999999988653
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.13 E-value=2.2e-05 Score=43.23 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=49.1
Q ss_pred HHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHH
Q 033062 7 SSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNS 65 (128)
Q Consensus 7 ~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l 65 (128)
+..+|..+|.+++| +.+|..++... ........+..+|..+|.+++|.|+.+++..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999 99998888654 445666788889999999999999999998765
No 54
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.10 E-value=2.3e-05 Score=48.10 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=52.8
Q ss_pred hhHHHHHHhhCC-CCCC---HHHHHHHHHhhcCCcChH-HHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTTS-TGSE---YEDLLPVMAEKLDVESFV-SELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d~-~~~g---~~eFl~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+-..|..+|. +++| ..+|..++...++..-.. ..+..+++..|.|++|.|+++||..++..+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 456789999999 8888 899999887744432233 6799999999999999999999998887654
No 55
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=2.5e-05 Score=59.89 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 33 DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 33 ~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+.......+..+|+.+|.+++|.|+.+||. + ++.+|..+|.|+||.|+++||...+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~------~----------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL------G----------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH------H----------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 344566788999999999999999999983 2 467899999999999999999998864
No 56
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.95 E-value=9.2e-05 Score=45.79 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=51.3
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
.++...|..+|.+++| +.++..++... ..+...+..+|+.+|.+++|.|+.++|..++..+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4578899999999999 88888887652 2455788999999999999999999999988753
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.94 E-value=5.2e-05 Score=46.03 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=52.1
Q ss_pred chhHHHHHHhhCC--CCCC---HHHHHHHHHhhcCC----cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 4 SNNSSRTAKGTTS--TGSE---YEDLLPVMAEKLDV----ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 4 ~~~~~~~~~~~d~--~~~g---~~eFl~~~~~~~~~----~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
...+...|..+|+ +++| ..+|..++...++. ......+..++..+|.+++|.|+.++|..++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3456788999999 8999 88888887542221 12367899999999999999999999999887654
No 58
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.93 E-value=0.0001 Score=41.99 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 8 SRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 8 ~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
.++|..+|++++| ..++..++... . .+...+..+|+.+|.+++|.|+.+++..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4688999999999 78888777553 2 256778999999999999999999999887654
No 59
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.91 E-value=3e-05 Score=57.62 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=76.5
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAE 81 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~ 81 (128)
.-+..+|..+|.+++| |.+...-.+...+......-++.+|+.|+...||.++..+|.-++.... .+..-.+-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l----gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL----GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc----Ccceeecc
Confidence 3457899999999888 7776666555555556668889999999999999999999998888643 23333445
Q ss_pred HHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 82 AMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 82 ~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
-+|...+...+|+|+|++|.+++..
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHh
Confidence 5677778888999999999999874
No 60
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.90 E-value=4.2e-05 Score=59.70 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=49.1
Q ss_pred HHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCC
Q 033062 10 TAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGM 70 (128)
Q Consensus 10 ~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~ 70 (128)
+-+..|+.+|| |+||..+-... |.++.....+|..||..++|.++.+++..++.+..+
T Consensus 79 la~iaD~tKDglisf~eF~afe~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 34556788888 99998887554 778889999999999999999999999999988654
No 61
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.89 E-value=0.00013 Score=44.99 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=51.1
Q ss_pred hhHHHHHHhhC-CCCCC----HHHHHHHHHhhc----CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTT-STGSE----YEDLLPVMAEKL----DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d-~~~~g----~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+.++|..+| .+++| ..++..++.... ........+..+++.+|.+++|.|+.+||..++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34567799999 77886 788888875532 2233557899999999999999999999999887764
No 62
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.87 E-value=0.00016 Score=44.25 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=52.7
Q ss_pred hhHHHHHHhhC-CCCCC----HHHHHHHHHh----hcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTT-STGSE----YEDLLPVMAE----KLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d-~~~~g----~~eFl~~~~~----~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+...|..+| .+++| ..++..++.. .+........+..+++..|.+++|.|+.++|..++..+.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45678999998 78888 7888888876 234445667799999999999999999999988876543
No 63
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.85 E-value=2.1e-05 Score=36.84 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=13.6
Q ss_pred HHHhhhhcCCCCCccCHHHHHHH
Q 033062 42 CGGFRLLADRDSGLITPGSLRQN 64 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~~ 64 (128)
..+|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.84 E-value=9.8e-05 Score=40.62 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCc-ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHh
Q 033062 21 YEDLLPVMAEKLDVE-SFVSELCGGFRLLADRDSGLITPGSLRQNSAL 67 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~ 67 (128)
..+|..++.. +... ....++..+|..+|.+++|.|+.+||..++..
T Consensus 7 ~~~~~~~l~~-~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 7 REEFRRALSK-LGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHH-TTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 7788888844 3434 66678999999999999999999999998864
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.81 E-value=1.3e-05 Score=61.46 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh------CCCCC-CCC-----HHHHH
Q 033062 17 TGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL------GMGMD-GMT-----KEDAE 81 (128)
Q Consensus 17 ~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~------g~~~~-~~~-----~~e~~ 81 (128)
+.+| |.||+=++... .-++..++.+|+.||.|++|.|+.+||..+.... |..+. .++ ..++.
T Consensus 211 g~~GLIsfSdYiFLlTlL---S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLL---SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCCeeeHHHHHHHHHHH---ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 4456 77777666544 3355678899999999999999999999887432 21000 011 11111
Q ss_pred H--HHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 82 A--MVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 82 ~--l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
. +...+..++++++++++|.+.+.++...+
T Consensus 288 saL~~yFFG~rg~~kLs~deF~~F~e~Lq~Ei 319 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKLSIDEFLKFQENLQEEI 319 (489)
T ss_pred hhHHHHhhccCCCccccHHHHHHHHHHHHHHH
Confidence 1 23346788899999999999888764433
No 66
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.78 E-value=0.00028 Score=43.13 Aligned_cols=65 Identities=8% Similarity=0.003 Sum_probs=52.2
Q ss_pred hhHHHHHHhhCC-CC-CC---HHHHHHHHHhh--cCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTTS-TG-SE---YEDLLPVMAEK--LDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d~-~~-~g---~~eFl~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+-.+|..++. ++ +| ..+|..++.+. +......+++..+++.+|.+++|.|+.+||..++..+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 456788999997 67 66 88888888642 34445778999999999999999999999998887654
No 67
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.77 E-value=0.0002 Score=44.15 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=52.1
Q ss_pred hhHHHHHHhhCC-CC-CC---HHHHHHHHHhhc----CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTTS-TG-SE---YEDLLPVMAEKL----DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d~-~~-~g---~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
.++...|..+|. ++ +| ..++..++.... ........+..+++.+|.+++|.|+.++|..++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456789999997 87 69 888888775421 2234567899999999999999999999999988776
No 68
>PF14658 EF-hand_9: EF-hand domain
Probab=97.77 E-value=0.00013 Score=42.17 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=50.0
Q ss_pred HHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCC-CccCHHHHHHHHHh
Q 033062 9 RTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDS-GLITPGSLRQNSAL 67 (128)
Q Consensus 9 ~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~I~~~el~~~l~~ 67 (128)
..|..+|+++.| ...+++++.....+.+.+.++..+.+.+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 468999999999 777777776544447778899999999999998 99999999999875
No 69
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.75 E-value=0.00021 Score=45.93 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=45.7
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNS 65 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l 65 (128)
..+.-+|..+|.|++| ..|+..+. ....+..+...|..+|.|++|.||.+|+...+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4577899999999999 67766554 12345667889999999999999999999988
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.74 E-value=4.3e-05 Score=35.76 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHH
Q 033062 80 AEAMVREGDLDGDGALNETEFCILM 104 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l 104 (128)
++..|..+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568899999999999999999864
No 71
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.71 E-value=0.0004 Score=42.54 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=51.7
Q ss_pred hhHHHHHHhhC-CCCCC----HHHHHHHHHhhc----CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTT-STGSE----YEDLLPVMAEKL----DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d-~~~~g----~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
.++.+.|..+| .+++| ..++..++...+ +.......+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 45788999997 99988 677777775322 2234567899999999999999999999999887664
No 72
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.70 E-value=1.8e-05 Score=50.67 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHH
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCIL 103 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~ 103 (128)
......+...|..+|.|++|.|+..||..+...+. ....=+...+...|.|+||.||..||..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~-----~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM-----PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS-----TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh-----hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34556788889999999999999999988655443 23334677899999999999999999764
No 73
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.63 E-value=0.00064 Score=41.66 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=50.4
Q ss_pred hhHHHHHHh-hCCCCCC----HHHHHHHHHhhc----CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKG-TTSTGSE----YEDLLPVMAEKL----DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~-~d~~~~g----~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+..+|.. .|.+++| ..||..++.... ........+..+++.+|.|++|.|+.+||..++..+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 456778888 7777865 888888887653 2223457788999999999999999999999887654
No 74
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.56 E-value=0.00046 Score=59.98 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=58.9
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcC
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM-----TKEDAEAMVREGDLDGDGALNETEFCILMVRLS 108 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~-----~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 108 (128)
.++.-+|+.||++.+|.++..+|+..|+.+|.+ .++ ++++++.++...|++.+|+|+..+|+.+|.+.-
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~-lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYD-LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCC-CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 557779999999999999999999999999852 112 234899999999999999999999999998643
No 75
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.53 E-value=0.00041 Score=54.53 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=57.6
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcC
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLS 108 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 108 (128)
..+...|...| +++|+|+..++..++...+..--....++++.++...+.+.+|+|+|++|+..+....
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 56788999999 9999999999999999877200123478899999999999999999999999877653
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.52 E-value=0.00016 Score=35.33 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 79 DAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 79 e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+++.+|..+|.+++|.|+.+||..++.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4678999999999999999999999973
No 77
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00022 Score=54.89 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHhhCCCCCC--HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh-CCCCCCCCHHHHHHH
Q 033062 7 SSRTAKGTTSTGSE--YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL-GMGMDGMTKEDAEAM 83 (128)
Q Consensus 7 ~~~~~~~~d~~~~g--~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~e~~~l 83 (128)
+.++-+.+..++.| +.||.++..-. . .-..+..|...+- .-.+.|+..+++++.... | .++++..++-+
T Consensus 359 lkrvk~kf~~~~~gISl~Ef~~Ff~Fl-~---~l~dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtG---veLSdhVvdvv 430 (489)
T KOG2643|consen 359 LKRVKEKFKDDGKGISLQEFKAFFRFL-N---NLNDFDIALRFYH-MAGASIDEKTFQRAAKVVTG---VELSDHVVDVV 430 (489)
T ss_pred HHHHHHhccCCCCCcCHHHHHHHHHHH-h---hhhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcC---cccccceeeeE
Confidence 34444555544455 55555554221 1 1122333333331 233566777777766653 5 56777777778
Q ss_pred HHhcCCCCCCCccHHHHHHHHHh
Q 033062 84 VREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 84 ~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
|..+|.|+||.|+++||+.+|.+
T Consensus 431 F~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 431 FTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred EEEEccCCCCcccHHHHHHHHHH
Confidence 88999999999999999999985
No 78
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.37 E-value=0.00016 Score=52.13 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
....+..+|..-|.|-+|+|+..|++.+++.--.-+..-+-++-+..|...|+++||+|+++||..-+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3367899999999999999999999998865220000011223445677889999999999999765553
No 79
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.25 E-value=0.0022 Score=39.05 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=49.5
Q ss_pred hhHHHHHHhhCCCC--CC---HHHHHHHHHhhcCCcC----hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 5 NNSSRTAKGTTSTG--SE---YEDLLPVMAEKLDVES----FVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 5 ~~~~~~~~~~d~~~--~g---~~eFl~~~~~~~~~~~----~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..+-.+|..++... +| ..+|..++........ ....+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45678888888663 45 8888888864333222 268899999999999999999999999887654
No 80
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.07 E-value=0.003 Score=49.09 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=55.1
Q ss_pred chhHHHHHHhhCCCCCC---HHHHHHHHHh---hcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 4 SNNSSRTAKGTTSTGSE---YEDLLPVMAE---KLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 4 ~~~~~~~~~~~d~~~~g---~~eFl~~~~~---~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
.+.++.+|+.+|.|.+| ..||.+.|.. .++..-....+...-+.+|-|++|.|+.+||.++++-..
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 46789999999999999 8888877754 334455667888899999999999999999999998655
No 81
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.04 E-value=0.00088 Score=30.74 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=13.4
Q ss_pred HHHhhhhcCCCCCccCHHHHHHHHH
Q 033062 42 CGGFRLLADRDSGLITPGSLRQNSA 66 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~~l~ 66 (128)
..+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455555555555555555555544
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.00 E-value=0.0026 Score=48.97 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=42.5
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
..+..+|+.+|.+++| ..||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4567899999999999 777742 4568999999999999999999988754
No 83
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.95 E-value=0.0053 Score=47.77 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=64.7
Q ss_pred HHHHHHhhC----CCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHh-------hCCCC
Q 033062 7 SSRTAKGTT----STGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSAL-------LGMGM 72 (128)
Q Consensus 7 ~~~~~~~~d----~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~-------~g~~~ 72 (128)
++++|+.+- ...+| |.+|+.++..... .....-+.-+|+.+|.+++|.|+..|++.+.+. .|.
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~-- 389 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQ-- 389 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCC--
Confidence 467777222 23355 8888888755433 334467888999999999999999999988764 232
Q ss_pred CCCC-HHHHHHHHHhcCCCCCCCccHHHHHH
Q 033062 73 DGMT-KEDAEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 73 ~~~~-~~e~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
..++ ++.+.+++...-+...++|+.++|..
T Consensus 390 e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 390 EALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 2333 33445566666667788999999987
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.92 E-value=0.0014 Score=30.00 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
++.++..+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998864
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.90 E-value=0.0034 Score=37.59 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=53.2
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHHhcCC
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLD----GDGALNETEFCILMVRLSP 109 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~----~~g~i~~~eF~~~l~~~~~ 109 (128)
++..+|+.+-. +.+.++.++|+.+|+.-.- ....+.+++..++..+.++ ..+.+++++|..+|.....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~-~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG-EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS--TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc-cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 36778988854 7899999999999987641 0246899999999987544 4689999999999986543
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.86 E-value=0.0025 Score=46.02 Aligned_cols=93 Identities=12% Similarity=0.229 Sum_probs=66.9
Q ss_pred HHHHHHhhCCCCCC---HHHHHHHHHhhcCCcC-------hHHHHHHHh-hhhcCCCCCccCHHHHHHHHHhhCCCCCCC
Q 033062 7 SSRTAKGTTSTGSE---YEDLLPVMAEKLDVES-------FVSELCGGF-RLLADRDSGLITPGSLRQNSALLGMGMDGM 75 (128)
Q Consensus 7 ~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~-------~~~~~~~~F-~~~D~~~~g~I~~~el~~~l~~~g~~~~~~ 75 (128)
+..++..+|++++. ..+|+++......... ....-..-| ..+|.|++|.+|.+||..+..-.+ ...
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n---~~~ 314 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN---FRL 314 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh---hhh
Confidence 46788899999888 8888876533221111 111222334 578999999999999999876666 456
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHH
Q 033062 76 TKEDAEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 76 ~~~e~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
...++..++...|.+++.+++.++...
T Consensus 315 alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 315 ALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred hHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 667788888888999999999998654
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0026 Score=52.30 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=58.3
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
....+++..|+.+|+..+|+++-..-+.+|...+ +++..+..|+...|.|+||+++-+||+-.|+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~-----Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG-----LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC-----CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3446789999999999999999999999998887 7788899999999999999999999988776
No 88
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.011 Score=37.90 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHhhhhcCCCCCccCHHHHHHHHHhh------CCCCCC-CCHHHHHHHH----HhcCCCCCCCccHHHHHHH
Q 033062 42 CGGFRLLADRDSGLITPGSLRQNSALL------GMGMDG-MTKEDAEAMV----REGDLDGDGALNETEFCIL 103 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~~l~~~------g~~~~~-~~~~e~~~l~----~~~d~~~~g~i~~~eF~~~ 103 (128)
-.-|+..|.++++.|+--||..++... |..-.+ .++.+++.++ ..-|.|+||.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 346899999999999999999998753 310011 2455665554 4567889999999999864
No 89
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.32 E-value=0.058 Score=33.19 Aligned_cols=64 Identities=16% Similarity=-0.009 Sum_probs=47.2
Q ss_pred hHHHHHHhhCCCCCC--HHHHHHHHHhhc----CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 6 NSSRTAKGTTSTGSE--YEDLLPVMAEKL----DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g--~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
.+-.+|..+..+++- ..+|..++...+ ........+..+++.+|.|+||.|++.|+..++..+.
T Consensus 9 ~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456778888733322 778888875543 3334456788999999999999999999999887665
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.13 E-value=0.045 Score=48.43 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=66.4
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcC------CcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCC
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLD------VESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMT 76 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~------~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~ 76 (128)
+..-||..+|.+.+| +..|.+|+...-- ...++..+.......||+.+|+|+..++..+|-.-.+- +..+
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe-NI~s 2332 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE-NILS 2332 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc-cccc
Confidence 456789999999999 9999999876421 12344578899999999999999999988877543210 2356
Q ss_pred HHHHHHHHHhcCCCCCCCccHHH
Q 033062 77 KEDAEAMVREGDLDGDGALNETE 99 (128)
Q Consensus 77 ~~e~~~l~~~~d~~~~g~i~~~e 99 (128)
.++++.-|+..+. +...|+.++
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~ 2354 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEE 2354 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHH
Confidence 6777777877765 344454444
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.89 E-value=0.047 Score=29.85 Aligned_cols=33 Identities=12% Similarity=-0.072 Sum_probs=25.8
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
-.+.-+..+|+.+|+.++|.+..+||..+++.+
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 344556779999999999999999999988764
No 92
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=95.74 E-value=0.26 Score=34.75 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=65.1
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCC-HHHH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMT-KEDA 80 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~-~~e~ 80 (128)
....+||..+|.+.+| +.+...+| ..+..+..+-.++.+...-|.|.+|+|++.++.-+++...- -.+. +..+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mm-EKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa--gEL~~ds~~ 175 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMM-EKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA--GELQEDSGL 175 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHH-HHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc--cccccchHH
Confidence 4567999999999999 66655555 44566677778899999999999999999999999986431 1333 3334
Q ss_pred HHHHH--hcCCCCCCCccHHHHH
Q 033062 81 EAMVR--EGDLDGDGALNETEFC 101 (128)
Q Consensus 81 ~~l~~--~~d~~~~g~i~~~eF~ 101 (128)
..+-+ ..|....|...-..|.
T Consensus 176 ~~LAr~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 176 LRLARLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHHHhcccchhhhhhhhHHHHH
Confidence 33333 2566666654444443
No 93
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.65 E-value=0.029 Score=42.38 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
.....+-.+|..+|.|.++.++..||..+-. .-.+.=++.+|...|...||.||-.||+.++.+..|+-
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc 315 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPC 315 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc-------cCchhHHHHHHhhhcccccCccccchhhhhhccCCCcc
Confidence 3456788999999999999999999876432 22333467788889999999999999999999877653
No 94
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.037 Score=43.81 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
+-+...|+..-+|-.|+|+-.--++++...- ++-+|+..|++..|-+.||.+++.||+..++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk-----lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK-----LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc-----CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3466789999899999999988888887655 6678999999999999999999999999887
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.54 E-value=0.044 Score=42.86 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=43.8
Q ss_pred hhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHH----hcCCCCCCCccHHHHHHHHHhc
Q 033062 45 FRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVR----EGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 45 F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~----~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
|-.+|++++|.|+.++|...-.. .++..-++.||. ......+|+++|++|+.++...
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~------tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH------TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc------chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 66679999999999999875433 344556778888 3445678999999999998753
No 96
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.38 E-value=0.078 Score=35.55 Aligned_cols=85 Identities=13% Similarity=0.253 Sum_probs=57.3
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC-CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchh
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM-TKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQ 113 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~-~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~ 113 (128)
.+..+++..+ |-.+|.|.++.+++..++.-+. +.. -+-.+..-|+.+|-|+|+-|-.++...++.++..+-+.
T Consensus 70 npfk~ri~e~---FSeDG~GnlsfddFlDmfSV~s---E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 70 NPFKRRICEV---FSEDGRGNLSFDDFLDMFSVFS---EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred ChHHHHHHHH---hccCCCCcccHHHHHHHHHHHH---hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 3444555444 4568999999999999998776 222 22344556788999999999999999999876543222
Q ss_pred --hHHHHHHHHHhh
Q 033062 114 --DAEAWLQKALDH 125 (128)
Q Consensus 114 --~~~~~~~~~~~~ 125 (128)
++.....+.|+|
T Consensus 144 ~eEv~~i~ekvieE 157 (189)
T KOG0038|consen 144 DEEVELICEKVIEE 157 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 344444444443
No 97
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.70 E-value=0.23 Score=31.23 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=41.5
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
.-.++|+..+. ++| -.+-..++.+ ..-+...+..+|.+.|.+++|+++.+||.-++.-+
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34678888875 467 3333333322 24556889999999999999999999999877643
No 98
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.27 E-value=0.039 Score=41.47 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC-CHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 40 ELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM-TKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 40 ~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~-~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
.+..-|..+|+|+++.|...|++-+-+-+- ..- ...=.+.+++..|.|+|.+|+++|+..++..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~---k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLL---KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHH---hhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 355679999999999999999766444332 111 2223466888899999999999999999874
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.15 E-value=0.55 Score=37.46 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCcChHHHHHHHh-hhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHH
Q 033062 21 YEDLLPVMAEKLDVESFVSELCGGF-RLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETE 99 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~~~~~~~~~~F-~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~e 99 (128)
-++|+......+..+....+...+. ..-|..+||.|+++|+.. +..+- .-++......|..+|+.++|.+++++
T Consensus 55 ~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~a-fe~~l----C~pDal~~~aFqlFDr~~~~~vs~~~ 129 (694)
T KOG0751|consen 55 PEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRA-FESVL----CAPDALFEVAFQLFDRLGNGEVSFED 129 (694)
T ss_pred HHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHH-HHhhc----cCchHHHHHHHHHhcccCCCceehHH
Confidence 5667766655555555555555544 344677889999999875 33333 33455667788889999999999999
Q ss_pred HHHHHHhcCC
Q 033062 100 FCILMVRLSP 109 (128)
Q Consensus 100 F~~~l~~~~~ 109 (128)
|..++.....
T Consensus 130 ~~~if~~t~l 139 (694)
T KOG0751|consen 130 VADIFGQTNL 139 (694)
T ss_pred HHHHHhcccc
Confidence 9988886543
No 100
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.93 E-value=0.025 Score=32.97 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=38.2
Q ss_pred HHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCC-------CCCccHHHHHHH
Q 033062 38 VSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDG-------DGALNETEFCIL 103 (128)
Q Consensus 38 ~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~-------~g~i~~~eF~~~ 103 (128)
.+++..+|+.+ .++.++||..+|+..| +.++++.++..+..-. .|.++|..|+..
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l----------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL----------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-----------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc----------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 36889999999 7888999999999754 2223466666654322 267888888653
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.81 E-value=0.7 Score=31.75 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCC
Q 033062 75 MTKEDAEAMVREGDLDGDGALNETEFCILMVRLSP 109 (128)
Q Consensus 75 ~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 109 (128)
..+..++.+|..++....+.+++.|...++.....
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 44567899999999888889999999999987543
No 102
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.45 E-value=0.17 Score=45.00 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 43 GGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 43 ~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
..|+.+|+++.|.|+..+|+.++..-- -.++.+++-++.-...|.+..++|.+|+.-++.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k----~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK----HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc----cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 458888999999999999999887544 468888888888777888889999999887764
No 103
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.38 E-value=0.61 Score=31.34 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=45.7
Q ss_pred hhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 45 FRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 45 F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
|..|-..+...++...|..+|+..++-+..++..++.-+|..+-..+..+|+|++|..+|...
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 333445566779999999999987653345888999999999765666679999999998754
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=92.76 E-value=0.061 Score=34.35 Aligned_cols=55 Identities=11% Similarity=-0.086 Sum_probs=33.2
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHH
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQ 63 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~ 63 (128)
.+.=+|...|.|++| -.|...+-... ...+..+..-|+.+|.|++|.|+..|...
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 456679999999999 33333322211 23334567778999999999999998753
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.67 E-value=0.53 Score=39.07 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 8 SRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 8 ~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
..++...|++++| +.+-+.+... +...-.+..+...|+..+.-+++.+...++..+...+.
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~-~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQ-LNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHH-HHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 3445555555555 3333333322 12222333444445444444555555555555444444
No 106
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.67 E-value=0.24 Score=39.99 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=61.1
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
...+..|..+|.++.|+++...+..+|+..+ .+++.+.+..+..+.+.+.+|.+...||.+++....-+-
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~---~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSEN---VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 4456779999999999999999999999988 689999999999999999999999999999988654443
No 107
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.17 E-value=0.33 Score=39.56 Aligned_cols=75 Identities=29% Similarity=0.321 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHH
Q 033062 21 YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETE 99 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~e 99 (128)
|..|..++...........-+..+|+.+|.+.+|.|++.+|...|..+- .....+.+..+++.++.+++ ..+.++
T Consensus 537 ~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~---~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 537 YAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK---AGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH---hhhHHHHHHHHHhhccCCcc-cccccc
Confidence 3444444443333222234457788889999999999999888887765 33444556667777777766 555444
No 108
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.16 E-value=1.4 Score=36.62 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=61.1
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCC
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPG 110 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 110 (128)
...-+..+|+..|++++|.++..+...++..+. ..+....+..++++.+...++++...+|+.+.......
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n---~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r 204 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN---VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR 204 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHH---HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC
Confidence 345567899999999999999999999999998 68888889999999888899999999998888765543
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.92 E-value=2.5 Score=36.20 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCC-------CCCCCCHHHHHHHHHhcCCC---
Q 033062 21 YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGM-------GMDGMTKEDAEAMVREGDLD--- 90 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~-------~~~~~~~~e~~~l~~~~d~~--- 90 (128)
|+.|..+..+. .+.-++..+|..+-.++..++|.++|..+++.-.. .-+......+..+++.+..+
T Consensus 207 ~e~f~~~l~kl----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~ 282 (1189)
T KOG1265|consen 207 LEKFYRLLNKL----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN 282 (1189)
T ss_pred HHHHHHHHHhc----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh
Confidence 77777776553 33357889999998888889999999999975210 00455778899999988766
Q ss_pred -CCCCccHHHHHHHHHhc
Q 033062 91 -GDGALNETEFCILMVRL 107 (128)
Q Consensus 91 -~~g~i~~~eF~~~l~~~ 107 (128)
.+|+++-+-|++.+.+-
T Consensus 283 a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hhccccchhhhHHHhhCC
Confidence 45899999999999873
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=91.68 E-value=3.1 Score=34.10 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhc-CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcC-------CCCC
Q 033062 21 YEDLLPVMAEKL-DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGD-------LDGD 92 (128)
Q Consensus 21 ~~eFl~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d-------~~~~ 92 (128)
|.+|..+....- ....+..++..+|..+-. +.+.++.++|..+|....- ....+.++++.++..+- ....
T Consensus 19 f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~-e~~~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (599)
T PLN02952 19 YKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD-ELDCTLAEAQRIVEEVINRRHHVTRYTR 96 (599)
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC-CcCCCHHHHHHHHHHHHhhccccccccc
Confidence 888877775542 233466889999999854 4478999999999998751 01256677777765431 1123
Q ss_pred CCccHHHHHHHHHh
Q 033062 93 GALNETEFCILMVR 106 (128)
Q Consensus 93 g~i~~~eF~~~l~~ 106 (128)
+.++++.|..++..
T Consensus 97 ~~l~~~~F~~~l~s 110 (599)
T PLN02952 97 HGLNLDDFFHFLLY 110 (599)
T ss_pred cCcCHHHHHHHHcC
Confidence 46899999999974
No 111
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=91.29 E-value=1.8 Score=27.29 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=50.7
Q ss_pred hhhcCCCCCccCHHHHHHHHHh----------hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhH
Q 033062 46 RLLADRDSGLITPGSLRQNSAL----------LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDA 115 (128)
Q Consensus 46 ~~~D~~~~g~I~~~el~~~l~~----------~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~ 115 (128)
+++|++.+.+||.+++..+.+. .| ..+|..-+-.++.+....+..-++..=..++++-.+..+-...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg---eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~q~~~ 86 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG---DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSMQSFV 86 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC---chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhHHHHH
Confidence 5689999999999999999875 35 6677777777776665566666776544555544444443445
Q ss_pred HHHHHHHHh
Q 033062 116 EAWLQKALD 124 (128)
Q Consensus 116 ~~~~~~~~~ 124 (128)
+..|...|+
T Consensus 87 ~~yLe~s~~ 95 (107)
T TIGR01848 87 PQYLEASLE 95 (107)
T ss_pred HHHHHHHHH
Confidence 555555543
No 112
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=1.2 Score=37.38 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
....|..+ +.+.|+|+-..-+.++...| ++...+..|+...|.|+||+++..||.-.|.
T Consensus 18 ~~~qF~~L-kp~~gfitg~qArnfflqS~-----LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 18 HDAQFGQL-KPGQGFITGDQARNFFLQSG-----LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHhcc-CCCCCccchHhhhhhHHhcC-----CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 34455555 56789999999999999888 5667888999999999999999999966654
No 113
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.61 E-value=1.4 Score=25.96 Aligned_cols=64 Identities=8% Similarity=-0.065 Sum_probs=44.7
Q ss_pred hHHHHHHhhCCCCCC--HHHHHHHHHhhcCC-cChHHHHHHHhhhhcCC----CCCccCHHHHHHHHHhhC
Q 033062 6 NSSRTAKGTTSTGSE--YEDLLPVMAEKLDV-ESFVSELCGGFRLLADR----DSGLITPGSLRQNSALLG 69 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g--~~eFl~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~g~I~~~el~~~l~~~g 69 (128)
++..+|..+..++.. ..+|..++...-+. ......+..+++.+.++ ..+.++.++|..+|..-.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 478899999663333 77777777554333 23467788888888544 478999999999986543
No 114
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.57 E-value=0.41 Score=36.19 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=41.1
Q ss_pred HHHhhCCCCCC------HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHh
Q 033062 10 TAKGTTSTGSE------YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSAL 67 (128)
Q Consensus 10 ~~~~~d~~~~g------~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~ 67 (128)
-|+.+|.|.++ ..-|..++.+. ..+....+..|+.+|.|+|..|+..|++.-|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~---s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKK---SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhh---ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 36778888887 34454444333 456677888999999999999999999987754
No 115
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.81 E-value=1.1 Score=33.86 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=45.2
Q ss_pred HHHhhhhcCCCCCccCHHHHHHHHHh----hCCCCCCCCHHHH-----------HHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 42 CGGFRLLADRDSGLITPGSLRQNSAL----LGMGMDGMTKEDA-----------EAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~~l~~----~g~~~~~~~~~e~-----------~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+.-|.++|.|++|+++-.||..++.. +.- ..-.++++ +.+++..|.|.|.-|+.+||+..-.+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYd--pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYD--PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 34577889999999999999888764 220 11112221 34567789999999999999988765
Q ss_pred c
Q 033062 107 L 107 (128)
Q Consensus 107 ~ 107 (128)
.
T Consensus 325 k 325 (442)
T KOG3866|consen 325 K 325 (442)
T ss_pred c
Confidence 3
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=0.23 Score=42.11 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=56.8
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
....+..+|...|.+.+|.|+..+....+...| ++...+..++...++.++|.|++.+|+..++.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g-----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG-----LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccCC-----CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 346677899999999999999999999888866 67778899999999999999999999877764
No 117
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.66 E-value=5.2 Score=24.25 Aligned_cols=70 Identities=17% Similarity=0.086 Sum_probs=44.3
Q ss_pred CccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 033062 54 GLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDHQ 126 (128)
Q Consensus 54 g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 126 (128)
..||.+||..+.+..| ..++..+++.++..+-.+.=...+-++-..++.....---+..+.-.-+.|.+.
T Consensus 13 n~iT~~eLlkyskqy~---i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN---ISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4689999999999999 699999999988876443333444455555554432221123444444444443
No 118
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.58 E-value=0.92 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 74 GMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 74 ~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
.+++++++.++..+-.|..|.|.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47899999999999999999999999998876
No 119
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=85.56 E-value=5.9 Score=33.93 Aligned_cols=69 Identities=20% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHH-----HHHHHHHhcCCCCCCCccHHHHHHHHHhcCCC
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKE-----DAEAMVREGDLDGDGALNETEFCILMVRLSPG 110 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~-----e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 110 (128)
.+++..|+.++....|..+.+++...+..+| ...-.+ ++..++...|.+.-|++++.+|...|.+....
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg---~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLG---YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcC---cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 6788899999999999999999999999999 455432 23444555566666899999999999875443
No 120
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.81 E-value=3.1 Score=31.66 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=52.1
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhh-CCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALL-GMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
..++..|.+||.+++|.++..+--..+.-+ | ...+.+-++.-|+.++-..||.+.-.+|.-++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~---p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG---PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeC---CCCcHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 567889999999999999988866655544 4 566788889999999999999998877766555
No 121
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=81.12 E-value=12 Score=23.86 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHH
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCIL 103 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~ 103 (128)
+..+|-+++..++...+..+++.+|...| .....+.++.++.... |+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG---~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG---AEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC---cccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 45567777778888899999999999999 6889999999998863 33 45665544
No 122
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.39 E-value=15 Score=30.22 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=50.2
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcC-------CCCCCCccHHHHHHHHHh
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGD-------LDGDGALNETEFCILMVR 106 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d-------~~~~g~i~~~eF~~~l~~ 106 (128)
..+..++..+|..+-.++ +.++.++|..+|....-.-...+.++++.++..+- .-..+.++.+.|..++..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 446688999999995444 89999999999998651001245667777776431 123456999999998875
No 123
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=77.82 E-value=15 Score=25.39 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC-------CHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM-------TKEDAEAMVREGDLDGDGALNETEFCILM 104 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~-------~~~e~~~l~~~~d~~~~g~i~~~eF~~~l 104 (128)
+++..+|..++..+.+.+|..|+..+++..- ... +.-|...++.. -.+++|.++.++-..++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr---~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNR---NANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc---ccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 7789999999988889999999999887632 111 11222222323 35778999887766554
No 124
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.64 E-value=13 Score=30.50 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCC-CCCCCccHHHHHHHHHh
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDL-DGDGALNETEFCILMVR 106 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~-~~~g~i~~~eF~~~l~~ 106 (128)
+..++..+|..+-. .+.++.++|..+|....- ....+.+.++.++..+.. ...+.++++.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~-~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQK-QDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcC-CccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44689999998853 479999999999988751 013467788888887532 24567999999999975
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=77.02 E-value=18 Score=29.66 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=51.6
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHHhc
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLD----GDGALNETEFCILMVRL 107 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~----~~g~i~~~eF~~~l~~~ 107 (128)
..+..++..+|..+-. ++.++.++|..+|....- ....+.+.+..++..+... ..|.++.+.|..++...
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQG-ERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcC-CccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3466889999998853 368999999999988751 0124566788888877543 34679999999999753
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.56 E-value=17 Score=22.25 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhcCCCCCccCHHHHHHHHHh-------hCCC-CCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 38 VSELCGGFRLLADRDSGLITPGSLRQNSAL-------LGMG-MDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 38 ~~~~~~~F~~~D~~~~g~I~~~el~~~l~~-------~g~~-~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
.++++-+|+.+ .|++|.++...|..+|+. +|.. -..-.+..++.+|... .....|+...|+..+..-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 36788899998 688999999999888864 2310 0012566778888875 245579999999999865
No 127
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=74.31 E-value=5.8 Score=30.42 Aligned_cols=59 Identities=7% Similarity=-0.088 Sum_probs=45.1
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhC
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLG 69 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g 69 (128)
.+.=||+..|.|.+| ..|...+- ....+..++.-|+.+|...+|.|+.+|.-.-+...+
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh-----ccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 356699999999999 45543332 133456788889999999999999999888777666
No 128
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=71.72 E-value=6.5 Score=32.44 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=44.9
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCccCHHHH
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGLITPGSL 61 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I~~~el 61 (128)
-..++|...|.+++| |.+|.+.+..... ....+++.-+|+++|++++ ....++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 357999999999999 9999888866533 4566889999999999998 8888887
No 129
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.97 E-value=8.5 Score=23.48 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
-||.++..|...+-..+.. +..++..+...++..+........++.+|.+.+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAE-RFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4688888886665543220 013667777777777665555567788888887754
No 130
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.90 E-value=5.8 Score=30.69 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=45.8
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHH-HHHHHHhcCCCCCCCccHHHHHH
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKED-AEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e-~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
++..+++++|..+|+.+.|+|+..-++.++..++ ..+++.+ +..+-...|+..-|.|-..+|..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N---~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN---RLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc---ccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 4558899999999999999999999999999888 5555433 33333345555555555554443
No 131
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=68.03 E-value=23 Score=22.98 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=51.4
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh-CCCCCCCCHHHHHHHHHhcCCCCCCCcc--HHHHHHHHHhcCCCc
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALL-GMGMDGMTKEDAEAMVREGDLDGDGALN--ETEFCILMVRLSPGM 111 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~-g~~~~~~~~~e~~~l~~~~d~~~~g~i~--~~eF~~~l~~~~~~~ 111 (128)
.....++..+|+.|.. +.|+.+.+-.++.+. | ..+|..++..+...+-.| ++|- ..-|+... ..+...
T Consensus 33 ~tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~---~~LT~~Qi~Yl~~~~~~n--~~I~~Il~~~vd~~-~l~ddd 103 (122)
T PF06648_consen 33 ETFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDG---LKLTRSQIDYLYNRVYNN--RYIINILQKFVDGQ-HLTDDD 103 (122)
T ss_pred chHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccH---hhcCHHHHHHHHHHHHcc--HHHHHHHHHHhcCc-cCCccc
Confidence 3455777888888853 568888888888776 4 477888887777665333 2221 11122211 123333
Q ss_pred hhhHHHHHHHHHhhh
Q 033062 112 MQDAEAWLQKALDHQ 126 (128)
Q Consensus 112 ~~~~~~~~~~~~~~~ 126 (128)
-...++.|..++|+.
T Consensus 104 i~~ls~FLV~einna 118 (122)
T PF06648_consen 104 ISYLSEFLVHEINNA 118 (122)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888999998875
No 132
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=67.40 E-value=12 Score=30.78 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTK-EDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~-~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
..+..+|..||.++||.++..|+..++...+- .+.+. .+.+. .-.+..|.++|.-|...+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~--~pW~~~~~~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPG--SPWTSSPYKDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC--CCCCCCccccc----ceecccceeehhhHHHHHH
Confidence 55788999999999999999999999998752 11110 00000 1123568889888877765
No 133
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=64.71 E-value=7.2 Score=22.69 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=29.7
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 55 LITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 55 ~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
.+++.-|..++. ..++...+..+...|+.=..++|+-++|++.++.
T Consensus 8 ~~~F~~L~~~l~------~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 8 WMPFPMLFSALS------KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred cccHHHHHHHHH------HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345444444443 3445556666666665556778999999998875
No 134
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=62.96 E-value=14 Score=21.16 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=27.7
Q ss_pred hhhcCCCCCccCHHHHHHHHHh----------hCCCCCCCCHHHHHHHHHh
Q 033062 46 RLLADRDSGLITPGSLRQNSAL----------LGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 46 ~~~D~~~~g~I~~~el~~~l~~----------~g~~~~~~~~~e~~~l~~~ 86 (128)
+++|...+.+|+.+++..+.+. .| ..++..-+-+++.+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktg---eDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTG---EDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCC---cccHHHHHHHHHHH
Confidence 5689999999999999998875 24 55666555555443
No 135
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.83 E-value=13 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=28.7
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHh
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSAL 67 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~ 67 (128)
.-+-.++..+|++.|.+.||.++..||..++..
T Consensus 261 klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 261 KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 345688999999999999999999999988754
No 136
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=58.51 E-value=58 Score=22.43 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=30.5
Q ss_pred cCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhhhh
Q 033062 87 GDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDHQQ 127 (128)
Q Consensus 87 ~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (128)
+..+...+++.++|++.+.+...+. ....+||.+..|.+.
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~~~~~-~~~~~~L~~iY~~I~ 183 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGSNDGE-DLPREFLEELYDSIK 183 (187)
T ss_pred cCCccCCCCCHHHHHHHHhccCCCC-CCCHHHHHHHHHHHH
Confidence 3444456899999999999876554 678899998887654
No 137
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=58.38 E-value=63 Score=26.47 Aligned_cols=62 Identities=6% Similarity=-0.152 Sum_probs=44.7
Q ss_pred hHHHHHHhhCCCCCC---HHHHHHHHHhhc--CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh
Q 033062 6 NSSRTAKGTTSTGSE---YEDLLPVMAEKL--DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 6 ~~~~~~~~~d~~~~g---~~eFl~~~~~~~--~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~ 68 (128)
++.+-|..+| +++| ..+....+...- .+.-..++++.+....+.+.+|.|++++|..++..+
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4566778888 8888 555555554321 122345778889999999999999999999876554
No 138
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=58.32 E-value=58 Score=22.42 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=29.4
Q ss_pred cCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhhhh
Q 033062 87 GDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDHQQ 127 (128)
Q Consensus 87 ~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (128)
+..+...+++.++|++...+..++. ....+|+.+..|.+.
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~-~~~~~~L~~iY~~I~ 181 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGE-DFPREFLKELYDSIK 181 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCC-CCCHHHHHHHHHHHH
Confidence 3445556899999999999877653 567788887776653
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=58.28 E-value=79 Score=26.22 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
+..+|..+|.|+||.++-.|+..+...
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 456777899999999999999888774
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=57.50 E-value=35 Score=19.64 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHhcC
Q 033062 59 GSLRQNSALLGMGMDGMTKEDAEAMVREGD 88 (128)
Q Consensus 59 ~el~~~l~~~g~~~~~~~~~e~~~l~~~~d 88 (128)
+++..++...| ..++..++..+++.-+
T Consensus 17 ~~m~~if~l~~---~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 17 DDMIEIFALAG---FEVSKAELSAWLRKED 43 (68)
T ss_pred HHHHHHHHHcC---CccCHHHHHHHHCCCC
Confidence 45666666666 4666666666666543
No 141
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.88 E-value=49 Score=21.12 Aligned_cols=54 Identities=4% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
+.-+|-++-..++..+|.++++.+|...| ..+....+..+++.+.. .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaG---veVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVN---ADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcC---CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 44456556566777899999999999999 68888888888877631 34556554
No 142
>PLN02223 phosphoinositide phospholipase C
Probab=56.61 E-value=65 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=49.3
Q ss_pred cChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhh----CCCCCCCCHHHHHHHHHhcCCC--------CCCCccHHHHHH
Q 033062 35 ESFVSELCGGFRLLADRDSGLITPGSLRQNSALL----GMGMDGMTKEDAEAMVREGDLD--------GDGALNETEFCI 102 (128)
Q Consensus 35 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~----g~~~~~~~~~e~~~l~~~~d~~--------~~g~i~~~eF~~ 102 (128)
..+-..+..+|..+- .+.|..+.+.|..++.-+ |. ...+.++++.++..+-.. ..+.++.+.|..
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e--~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~ 88 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDE--DGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNE 88 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhccc--ccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHH
Confidence 345578999999883 677899999999988433 21 345677777777754221 225699999999
Q ss_pred HHHh
Q 033062 103 LMVR 106 (128)
Q Consensus 103 ~l~~ 106 (128)
++..
T Consensus 89 ~L~s 92 (537)
T PLN02223 89 FLFS 92 (537)
T ss_pred HhcC
Confidence 9976
No 143
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.43 E-value=35 Score=22.13 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCHHHHHH-HHHhcCCCCCCCccHHHHHHHHHhcCC-------CchhhHHHHHHHHHhhhh
Q 033062 74 GMTKEDAEA-MVREGDLDGDGALNETEFCILMVRLSP-------GMMQDAEAWLQKALDHQQ 127 (128)
Q Consensus 74 ~~~~~e~~~-l~~~~d~~~~g~i~~~eF~~~l~~~~~-------~~~~~~~~~~~~~~~~~~ 127 (128)
++++++++- -|...|.|+++.|+--|..+.+..... +..=+.+..+.+.||-++
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL 123 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVL 123 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHh
Confidence 466666654 467789999999999999888864321 222245666788888765
No 144
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=54.41 E-value=19 Score=20.45 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCC
Q 033062 51 RDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDG 91 (128)
Q Consensus 51 ~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~ 91 (128)
..++.++...+...+...| ..++++.+...+..++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g---~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRG---EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcC---hhhhHHHHHHHHHHHHHCC
Confidence 4557899999999999889 7899999999888886653
No 145
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=54.19 E-value=20 Score=15.73 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.5
Q ss_pred CCCCCccCHHHHH
Q 033062 50 DRDSGLITPGSLR 62 (128)
Q Consensus 50 ~~~~g~I~~~el~ 62 (128)
.|++|.|+.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 4555555554443
No 146
>PLN02952 phosphoinositide phospholipase C
Probab=53.53 E-value=56 Score=27.08 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
+.|.++.+++..+.+.+-. ....+..++..+|..+..+ .+.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~-~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI-TEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc-ccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 4589999999887776641 0233678999999998644 4689999999999864
No 147
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=52.34 E-value=52 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.9
Q ss_pred cCCCCCccCHHHHHHHHHhhCC
Q 033062 49 ADRDSGLITPGSLRQNSALLGM 70 (128)
Q Consensus 49 D~~~~g~I~~~el~~~l~~~g~ 70 (128)
-.++...|+-++|.-+|.++|+
T Consensus 80 ~~EkRKTIngdDllwAm~tLGF 101 (168)
T KOG0869|consen 80 QREKRKTINGDDLLWAMSTLGF 101 (168)
T ss_pred HHHhcCcccHHHHHHHHHHcCc
Confidence 4567788999999999999995
No 148
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.75 E-value=33 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=34.7
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHH
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCIL 103 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~ 103 (128)
-+|+|+-..-+..+.. ..++...+-++++..|.|.||.++-+||.-.
T Consensus 456 ~~gk~sg~~ak~~mv~-----sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 456 VNGKLSGRNAKKEMVK-----SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred cCceeccchhHHHHHh-----ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 3466666555554433 3467778999999999999999999999643
No 149
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.04 E-value=28 Score=22.62 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=18.8
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHh
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSAL 67 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~ 67 (128)
+......||++++|.|..-+++-++..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 455678889999999999988887754
No 150
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=45.33 E-value=59 Score=18.61 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
.+..|+.+-++..+.++| .++++..+..+...+
T Consensus 28 ~NPpine~mir~M~~QMG---~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMG---RKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhC---CCccHHHHHHHHHHH
Confidence 346799999999999999 899999998887654
No 151
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=44.69 E-value=1.5e+02 Score=25.96 Aligned_cols=94 Identities=9% Similarity=-0.073 Sum_probs=56.0
Q ss_pred hhHHHHHHhhCCCCCC---HHHHHHHHHhhcCCcCh-HHHHHHHh---hhhcCCCCCccCHHHHHHHHHhhCCCCCCCCH
Q 033062 5 NNSSRTAKGTTSTGSE---YEDLLPVMAEKLDVESF-VSELCGGF---RLLADRDSGLITPGSLRQNSALLGMGMDGMTK 77 (128)
Q Consensus 5 ~~~~~~~~~~d~~~~g---~~eFl~~~~~~~~~~~~-~~~~~~~F---~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~ 77 (128)
.++..+++.++....| +++|+.+.......... ++-+...| ..-|++..|.++..++...|..-. ..++.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~---e~l~~ 823 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY---EDLDT 823 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh---hhhcH
Confidence 4566788888877777 99999877553322222 22234444 444677779999999999887765 23433
Q ss_pred -HHHHHHHHhcCCCCCCCccHHHHHH
Q 033062 78 -EDAEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 78 -~e~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
..+-.-|+.+-.++. .|..+|.+.
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 233334444443333 455566555
No 152
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=43.92 E-value=53 Score=19.48 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCch
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMM 112 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~ 112 (128)
+.|.|+.++...+.. .+.+.+.++.++..... .|...+..|..++....|.+.
T Consensus 26 ~~~Vit~e~~~~I~a------~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~ 78 (82)
T cd08330 26 GKKVITQEQYSEVRA------EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLV 78 (82)
T ss_pred HCCCCCHHHHHHHHc------CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHH
Confidence 557888888766442 23457778888877543 677889999999987777653
No 153
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=43.13 E-value=60 Score=18.11 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=24.7
Q ss_pred CccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 54 GLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 54 g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
..+|.+||...+..++ ..++..++-.++...
T Consensus 8 ~~lTeEEl~~~i~~L~---~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLD---EIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhc---CCCCHHHHHHHHHHH
Confidence 4578889999999988 788888887777654
No 154
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=42.66 E-value=87 Score=19.82 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=40.5
Q ss_pred HHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 41 LCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 41 ~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
+.-+|-++-..++..+|.+++..+|...| ..+....+..+++.+.. .+.++.+....
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaG---veVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVG---VEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcC---CCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 33455555566777899999999999999 67877777777776631 34566666544
No 155
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=42.38 E-value=10 Score=26.97 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 51 RDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 51 ~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
..+|+++..||.-+-.-+. +.+.=+...|+..|.|+||.|+.+||..++.
T Consensus 200 p~d~~~sh~el~pl~ap~i-----pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRAPLI-----PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred CccccccccccccccCCcc-----cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3578888777654221111 1122345677888999999999999988764
No 156
>PRK00523 hypothetical protein; Provisional
Probab=42.19 E-value=71 Score=18.71 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=31.4
Q ss_pred HHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 43 GGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 43 ~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
..|+..- ..+-.|+.+-++..+.++| .++++..++.+...+
T Consensus 28 k~~~k~l-~~NPpine~mir~M~~QMG---qKPSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQI-RENPPITENMIRAMYMQMG---RKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHH-HHCcCCCHHHHHHHHHHhC---CCccHHHHHHHHHHH
Confidence 3444332 2346799999999999999 899999998887765
No 157
>PF15565 Imm16: Immunity protein 16
Probab=42.16 E-value=88 Score=19.75 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCchhhHH-HHHHHHH
Q 033062 98 TEFCILMVRLSPGMMQDAE-AWLQKAL 123 (128)
Q Consensus 98 ~eF~~~l~~~~~~~~~~~~-~~~~~~~ 123 (128)
+++...+...-|.|+..|. +|-....
T Consensus 63 ~~~l~~l~~~~p~m~~~A~keWa~il~ 89 (106)
T PF15565_consen 63 EEYLPALAEAIPQMMINAPKEWAKILH 89 (106)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5677777777788888886 8876554
No 158
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.11 E-value=81 Score=21.12 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=40.8
Q ss_pred HHHhhhhcCCCCCccCHHHHHH---HHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc
Q 033062 42 CGGFRLLADRDSGLITPGSLRQ---NSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 42 ~~~F~~~D~~~~g~I~~~el~~---~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
.-+|... +-||.++..|... ++...- .++.+++..++.....-+...+++-.|...+.+.
T Consensus 33 ~Llf~Vm--~ADG~v~~~E~~a~r~il~~~f----~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 33 ALLFHVM--EADGTVSESEREAFRAILKENF----GIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHH--hcccCcCHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3567777 4566777777544 443332 4788888888887655556678888888888754
No 159
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=42.06 E-value=7.1 Score=25.83 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcC----------CCchhhHHHHHHHHHh
Q 033062 55 LITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLS----------PGMMQDAEAWLQKALD 124 (128)
Q Consensus 55 ~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~----------~~~~~~~~~~~~~~~~ 124 (128)
.||.+|++.++.... ..++..--. ..-.+.|..|+|+-....+.+.. ..+.+.-+.-+.+.||
T Consensus 9 ~vTldevr~Av~~f~---~~lp~gi~r----t~lv~~d~~iD~~~L~~yL~g~p~q~FymSkeTyeifeeee~~ip~~iD 81 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFE---EDLPKGINR----TILVNDDQSIDFERLAPYLGGIPDQRFYMSKETYEIFEEEEKDIPKEID 81 (140)
T ss_pred cccHHHHHHHHHHHH---HhCccCCce----EEEEcCCceecHHHHhhhcCCCCCcceeeeHHHHHhhhHHHHhCHHHHH
Confidence 477788888777665 233222111 11234566777777766665432 1222344555556666
Q ss_pred hhh
Q 033062 125 HQQ 127 (128)
Q Consensus 125 ~~~ 127 (128)
.||
T Consensus 82 ~VQ 84 (140)
T PF13075_consen 82 KVQ 84 (140)
T ss_pred HHH
Confidence 665
No 160
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=40.50 E-value=92 Score=23.63 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=6.2
Q ss_pred CCccHHHHHHHHHh
Q 033062 93 GALNETEFCILMVR 106 (128)
Q Consensus 93 g~i~~~eF~~~l~~ 106 (128)
|+|+-+|=+..+.+
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444444
No 161
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=40.39 E-value=85 Score=19.04 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=41.9
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHH
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWL 119 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~ 119 (128)
..-.|...+++..|...- ...+..+...+-..+|...++.||-=||-...+=..| -......|.
T Consensus 19 ~r~IVPW~~F~~~L~~~h---~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP-w~~ll~Nw~ 82 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVH---PISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP-WSTLLRNWQ 82 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS-----SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT---GGGHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhc---CCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhh-HHHHHHHHH
Confidence 335699999999999876 3445566677777889999999998887666553333 223345553
No 162
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=40.28 E-value=79 Score=18.65 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 033062 76 TKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDHQ 126 (128)
Q Consensus 76 ~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 126 (128)
++++++-++..+ +||+.+|+-+ .+.|-.+++....|....+|+.
T Consensus 15 ~~~eIe~LL~~A------kiSl~DyImi-KRGS~DmPe~l~~~~~~Qidee 58 (79)
T PF10398_consen 15 AQEEIEILLKIA------KISLVDYIMI-KRGSQDMPEHLNMAFLAQIDEE 58 (79)
T ss_dssp HHHHHHHHHHHH------T--HHHHHHH-HTTSS---TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh------hccHHHHHHh-cccCCcCcccccHHHHHHHHHH
Confidence 345666666665 5889998865 4446677777888988888875
No 163
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=39.14 E-value=46 Score=23.24 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHH
Q 033062 64 NSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKA 122 (128)
Q Consensus 64 ~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~ 122 (128)
++..++ ..+++++++.+...+.- +--.++|..|..++-.+.+.-..-+-.||.+|
T Consensus 86 ~~~~L~---~~Lt~~Qie~vkd~mTy-g~v~~T~k~y~~mvP~Lteeek~~I~~~L~eA 140 (188)
T PF12875_consen 86 YMAKLS---KYLTEEQIEQVKDGMTY-GVVPFTYKGYLDMVPSLTEEEKAQILTWLKEA 140 (188)
T ss_dssp HHHHHT---TT--HHHHHHHHHHCTT-THHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHH---hhcCHHHHHHHHccccc-eehhhhHHHHHHHcCcccHHHHHHHHHHHHHH
Confidence 344577 68999999988887753 33357888888887544444333566777765
No 164
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=37.70 E-value=63 Score=16.77 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHhhhhc-C-CCCCccCHHHHHHHHHh
Q 033062 41 LCGGFRLLA-D-RDSGLITPGSLRQNSAL 67 (128)
Q Consensus 41 ~~~~F~~~D-~-~~~g~I~~~el~~~l~~ 67 (128)
+..+|..+- . .....++..||+.++..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 444555443 1 23445666666666654
No 165
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.69 E-value=1e+02 Score=25.73 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=51.8
Q ss_pred cCCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCC-CC----CCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 32 LDVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGM-GM----DGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 32 ~~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~-~~----~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
...+..+.+++..|..+|. ++|.++.+++..++..... ++ .+.+.+....++...+.+..|.+.+.++..++..
T Consensus 11 ~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 11 ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3446788899999999987 8999999999998875310 00 1223444556677778887887777777666654
No 166
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.50 E-value=26 Score=30.20 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
..+...|+..|..++|.|+..+-.-++...| +....+-+++...|..+.|.++..+|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~-----L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG-----LPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc-----cchhhhhccccccccccCCccccccccccchH
Confidence 3456678899999999999999888777777 56666777888888888898998888776653
No 167
>PF03395 Pox_P4A: Poxvirus P4A protein; InterPro: IPR005058 P4A is one of the most abundant structural proteins in the Vaccinia virion.; GO: 0005198 structural molecule activity, 0019012 virion
Probab=35.42 E-value=95 Score=26.88 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=57.6
Q ss_pred CHHHHHHHHHhhcCCcChHHHHHHH------hhhhcCCCCCccCHHHHHHHH----HhhCCCCCCCCHHH-HHHHHHhcC
Q 033062 20 EYEDLLPVMAEKLDVESFVSELCGG------FRLLADRDSGLITPGSLRQNS----ALLGMGMDGMTKED-AEAMVREGD 88 (128)
Q Consensus 20 g~~eFl~~~~~~~~~~~~~~~~~~~------F~~~D~~~~g~I~~~el~~~l----~~~g~~~~~~~~~e-~~~l~~~~d 88 (128)
||-.|..+++. +...+++..++++ ++.-|+.....|.++..+.++ ..+|+ .++-.. +--.-...-
T Consensus 468 gfmrFfqlLrl-~~n~~p~~aiKEvlm~Y~gik~~D~Gsp~~I~~esy~~Fv~lLf~aMGF---~Vtv~~si~gS~n~t~ 543 (888)
T PF03395_consen 468 GFMRFFQLLRL-MTNKPPETAIKEVLMTYAGIKLDDKGSPHYIKKESYQDFVILLFSAMGF---KVTVSRSIIGSNNHTY 543 (888)
T ss_pred hHHHHHHHHHH-HccCChHHHHHHHHHHHhheecCCCCCccccCHHHHHHHHHHHHHhcCC---eEEEEeeeeccCceEE
Confidence 35555555533 3335666665554 344466666678888877644 45673 442111 000000000
Q ss_pred CCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 033062 89 LDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDH 125 (128)
Q Consensus 89 ~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (128)
..-+.+|+...+..++.+.+... ++|+.-+..+.|-
T Consensus 544 i~vrprVtk~~i~~~L~K~scsk-~eaeKlisaa~dL 579 (888)
T PF03395_consen 544 ISVRPRVTKQYIINMLSKASCSK-DEAEKLISAAHDL 579 (888)
T ss_pred EEECchhhHHHHHHHHHhhcCCH-HHHHHHHHHHHHH
Confidence 11234799999999999877664 7888888777763
No 168
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=35.11 E-value=73 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=23.9
Q ss_pred cCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Q 033062 49 ADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 49 D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~ 86 (128)
..+.+|++..++|...+..-+ ..++.+++..++..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~---~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG---LWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT----TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcC---CCCCHHHHHHHHhh
Confidence 468899999999999998877 67889999998875
No 169
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.05 E-value=63 Score=23.10 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCCCccHHHHHHHHHhcC-CCchhhHHHHHHHHHhh
Q 033062 80 AEAMVREGDLDGDGALNETEFCILMVRLS-PGMMQDAEAWLQKALDH 125 (128)
Q Consensus 80 ~~~l~~~~d~~~~g~i~~~eF~~~l~~~~-~~~~~~~~~~~~~~~~~ 125 (128)
++.++... ..||+|+-.|-..++.+.. .+.-+.+..|+..+|.+
T Consensus 114 l~AmIaAA--kaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~ 158 (225)
T COG2979 114 LRAMIAAA--KADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQ 158 (225)
T ss_pred HHHHHHHH--hhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 34444433 5689999999999997654 46657899999998864
No 170
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=34.99 E-value=37 Score=20.03 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=19.2
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
..|+||..++..+|.... ++.+.+..++..+
T Consensus 18 ~~G~lT~~eI~~~L~~~~-----~~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD-----LDPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-S--------HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC-----CCHHHHHHHHHHH
Confidence 468899999998886433 6677787777754
No 171
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.61 E-value=1.1e+02 Score=18.71 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Q 033062 38 VSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 38 ~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~ 86 (128)
.+.+..+|..+- ..|+..+.+.+.+.+| +++.+++.+-..
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG-----Lse~~I~~i~~~ 42 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG-----LSENEIDVAKAN 42 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 456677777663 3567788888888888 565565554443
No 172
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=33.33 E-value=60 Score=18.19 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=18.9
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCHHHHHH
Q 033062 55 LITPGSLRQNSALLGMGMDGMTKEDAEA 82 (128)
Q Consensus 55 ~I~~~el~~~l~~~g~~~~~~~~~e~~~ 82 (128)
.|+.++|..+|+... ..++..++.+
T Consensus 29 ~it~~DF~~Al~~~k---pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVK---PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCG---GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcC---CCCCHHHHHH
Confidence 478888888888887 6788777754
No 173
>PF14164 YqzH: YqzH-like protein
Probab=33.21 E-value=87 Score=17.91 Aligned_cols=30 Identities=3% Similarity=-0.001 Sum_probs=21.7
Q ss_pred HHHHHHhhhhcCC-CCCccCHHHHHHHHHhh
Q 033062 39 SELCGGFRLLADR-DSGLITPGSLRQNSALL 68 (128)
Q Consensus 39 ~~~~~~F~~~D~~-~~g~I~~~el~~~l~~~ 68 (128)
..+..+|+.+..+ ....++..|++.+...+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 4567788888766 66678888877766654
No 174
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.63 E-value=1.1e+02 Score=17.91 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 53 SGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 53 ~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
+-.|+.+-++..+.+.| ..+++..++++...+
T Consensus 36 NPpine~~iR~M~~qmG---qKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMG---QKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhC---CCchHHHHHHHHHHH
Confidence 36799999999999999 899999988887754
No 175
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.77 E-value=37 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHhcCCCCCCCccHHHHHHHHHhc
Q 033062 84 VREGDLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 84 ~~~~d~~~~g~i~~~eF~~~l~~~ 107 (128)
......+..|..+|+||+..+.+.
T Consensus 78 ~~al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 78 KTALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHHHhcCCccHHHHHHHHHhC
Confidence 334455678999999999998764
No 176
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=31.76 E-value=1.4e+02 Score=19.03 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.4
Q ss_pred HHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q 033062 43 GGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCI 102 (128)
Q Consensus 43 ~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~ 102 (128)
-+|-+.-..++..+|.++++.+|...| ..+....+..++..+.. -+.++.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaG---vevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVG---ADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcC---CcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344444445667799999999999999 67777777777776631 34566664
No 177
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=31.71 E-value=1.2e+02 Score=20.98 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Q 033062 50 DRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 50 ~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~ 86 (128)
.+.+|.+..++|...++.-+ ..++.+.+.+++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~---~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY---KWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc---CCCCHHHHHHHHHc
Confidence 57899999999999887666 57899999888875
No 178
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=31.21 E-value=1.9e+02 Score=23.63 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHH---hcCC-----CCCCCccHHHHHHHHHh
Q 033062 43 GGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVR---EGDL-----DGDGALNETEFCILMVR 106 (128)
Q Consensus 43 ~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~---~~d~-----~~~g~i~~~eF~~~l~~ 106 (128)
-+|..|-..+++.++.--|.++|++.|+ .-++.-+..++. .++. ..-+.++.+-|..++..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGL---rtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGL---RTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCC---CcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3688886666799999999999999995 444444444433 3443 22346888889888753
No 179
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=31.15 E-value=2.3e+02 Score=21.39 Aligned_cols=75 Identities=7% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHhhCCCC-CC-HHHHHHHHHhhc-CCcChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 033062 8 SRTAKGTTSTG-SE-YEDLLPVMAEKL-DVESFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMV 84 (128)
Q Consensus 8 ~~~~~~~d~~~-~g-~~eFl~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~ 84 (128)
..|+..+...+ ++ |..|..++.+.+ ..+.....+..++..+-..+-..+..+.+..+-.++. ..++++++...+
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~---l~~se~~a~~~~ 284 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFA---PEKSEREAAEFM 284 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhC---CCCCHHHHHHHH
Confidence 45556665444 55 888887776532 2234445677777766444444455556666555666 577877766554
Q ss_pred H
Q 033062 85 R 85 (128)
Q Consensus 85 ~ 85 (128)
.
T Consensus 285 ~ 285 (311)
T cd05167 285 L 285 (311)
T ss_pred H
Confidence 4
No 180
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=30.76 E-value=1.2e+02 Score=18.10 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
-||.++..|...+-+.+.. ...+......+...+..-.+...++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQ--MGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 4678888776554443321 1222223333333222111112556777777665
No 181
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.67 E-value=26 Score=22.37 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCCCccCHHHHHHHHHhh-CCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 51 RDSGLITPGSLRQNSALL-GMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 51 ~~~g~I~~~el~~~l~~~-g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
--||.|+.+|...+...+ .. ..++..+...+...++.-....+++.+|+..+..
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAER--FGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHC--GCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred HcCCCCCHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 357899999988777665 10 2344555556655554333335666667665544
No 182
>PRK01844 hypothetical protein; Provisional
Probab=30.62 E-value=1.2e+02 Score=17.81 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.2
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG 87 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~ 87 (128)
.+-.|+.+-++..+.+.| .++++..++.+...+
T Consensus 35 ~NPpine~mir~Mm~QMG---qkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMG---QKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhC---CCccHHHHHHHHHHH
Confidence 345799999999999999 899999998887765
No 183
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=30.58 E-value=2.8e+02 Score=24.09 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHhhCCCCCC---HHHHHHHHHhhcCCcChHHHHHHHhhhhcCCCCCc------cCHHHHHHHHHhhCC----CCCCCC
Q 033062 10 TAKGTTSTGSE---YEDLLPVMAEKLDVESFVSELCGGFRLLADRDSGL------ITPGSLRQNSALLGM----GMDGMT 76 (128)
Q Consensus 10 ~~~~~d~~~~g---~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~------I~~~el~~~l~~~g~----~~~~~~ 76 (128)
+++.+|+..+| .-+|..-+..+.+ ....++++.+|......+... +-.-++.++.+.+|. ++.++.
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNve 553 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIE 553 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC
Q ss_pred HHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q 033062 77 KEDAEAMVREGDLDGDGALNETEFCILMV 105 (128)
Q Consensus 77 ~~e~~~l~~~~d~~~~g~i~~~eF~~~l~ 105 (128)
. -++.+|. ..++.-.|++..|...+.
T Consensus 554 p-svrsCF~--~v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 554 P-SVRSCFQ--FVNNKPEIEAALFLDWMR 579 (966)
T ss_pred h-HHHHHHH--hcCCCCcchHHHHHHHhc
No 184
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.40 E-value=60 Score=15.64 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=11.6
Q ss_pred CCCccHHHHHHHHHhc
Q 033062 92 DGALNETEFCILMVRL 107 (128)
Q Consensus 92 ~g~i~~~eF~~~l~~~ 107 (128)
.|+|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4678888888777653
No 185
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=29.13 E-value=79 Score=18.83 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHH
Q 033062 59 GSLRQNSALLGMGMDGMTKEDAEAM 83 (128)
Q Consensus 59 ~el~~~l~~~g~~~~~~~~~e~~~l 83 (128)
-|+..+|+.+| ..+++++..-+
T Consensus 20 vEIL~ALrkLg---e~Ls~eE~~FL 41 (78)
T PF06384_consen 20 VEILTALRKLG---EKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHHTT-------HHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHH
Confidence 46778999999 89999886544
No 186
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=28.54 E-value=92 Score=24.11 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=41.8
Q ss_pred hhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Q 033062 45 FRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVR 106 (128)
Q Consensus 45 F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~ 106 (128)
...+|..+.|.++.-.++-+|.++- ...-.+.++.||.... +.+|.+.+..|.++++.
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc---~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLC---GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhc---cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 3467999999999998888888764 2344567788888764 66787666666666553
No 187
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.70 E-value=45 Score=30.90 Aligned_cols=69 Identities=4% Similarity=0.014 Sum_probs=49.3
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCC----CHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcC
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGM----TKEDAEAMVREGDLDGDGALNETEFCILMVRLS 108 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~----~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~ 108 (128)
..-++...++..+|++..|+|...++..+++.+. .++ ..+. +.+.-.+....+|.|++.+-.-++.+.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~---ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD---PPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC---CccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 3447889999999999999999999999999864 222 1111 2233345556778899888777777644
No 188
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.61 E-value=2.6e+02 Score=20.49 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCCCccCHHHHHHHHHhhC-CCCCCCCHHH---HHHHHHhcCCCCCCCccHHHHHHHHHhcCC
Q 033062 51 RDSGLITPGSLRQNSALLG-MGMDGMTKED---AEAMVREGDLDGDGALNETEFCILMVRLSP 109 (128)
Q Consensus 51 ~~~g~I~~~el~~~l~~~g-~~~~~~~~~e---~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~ 109 (128)
.-||.|+..|+. +.+.+- . ..++.++ +..+|... .....++.+|+..+.....
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~--~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~ 123 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDR--MNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCG 123 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHH--cCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhc
Confidence 457999999987 334321 0 1255555 55555544 3334778899888876443
No 189
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=26.54 E-value=1.3e+02 Score=19.70 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=25.0
Q ss_pred CCCccCHHHHHHHHHhhCC------CCCCCCHHHHHHHHHhcCCCCCC-CccHHHHHH
Q 033062 52 DSGLITPGSLRQNSALLGM------GMDGMTKEDAEAMVREGDLDGDG-ALNETEFCI 102 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~------~~~~~~~~e~~~l~~~~d~~~~g-~i~~~eF~~ 102 (128)
|+..||.+||..++..-.- .|..++.++++.+...+.....+ .++..|-++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 4455666666666554210 12234555666655555443333 365555444
No 190
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=26.36 E-value=1.1e+02 Score=15.93 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHH
Q 033062 58 PGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCIL 103 (128)
Q Consensus 58 ~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~ 103 (128)
.+|...+|..+| .+..++...+..... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG-----y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG-----YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT-----S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC-----CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 367778888888 577777777776543 223445554443
No 191
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=25.46 E-value=1.1e+02 Score=18.16 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCcChHHHHHHHhh-hhcCCCCCccCHHHHHHHHHhh
Q 033062 21 YEDLLPVMAEKLDVESFVSELCGGFR-LLADRDSGLITPGSLRQNSALL 68 (128)
Q Consensus 21 ~~eFl~~~~~~~~~~~~~~~~~~~F~-~~D~~~~g~I~~~el~~~l~~~ 68 (128)
+......+...+..+.+..+++...+ .+...+...++.+++..-+.-.
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~ 64 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPK 64 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 44444444444444555555555443 2222345566666666655543
No 192
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=1.5e+02 Score=22.82 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCcChHHHHHHHhhhh------cCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Q 033062 23 DLLPVMAEKLDVESFVSELCGGFRLL------ADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 23 eFl~~~~~~~~~~~~~~~~~~~F~~~------D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~ 86 (128)
+|..++.. ......++++.||+.+ |+|.+..--.++|+.+=.+.. .+++++.++....
T Consensus 17 DfYelLgV--~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYE----VLsDpekRk~YD~ 80 (336)
T KOG0713|consen 17 DFYELLGV--PKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYE----VLSDPEKRKHYDT 80 (336)
T ss_pred CHHHHhCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH----HhcCHHHHHHHHh
Confidence 35545432 2345678999999877 788888777788888777666 5777777766553
No 193
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=24.97 E-value=6.1e+02 Score=24.41 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=24.1
Q ss_pred CCCCCCCccHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 033062 88 DLDGDGALNETEFCILMVRLSPGMMQDAEAWLQKALDHQ 126 (128)
Q Consensus 88 d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 126 (128)
.++...+++.++|++..++...+- +..++.|....|.+
T Consensus 756 np~vk~kMt~~~Fi~n~rgin~g~-dlp~e~L~~iY~~I 793 (1780)
T PLN03076 756 NPMVKNKMSADDFIRNNRGIDDGK-DLPEEFMRSLYERI 793 (1780)
T ss_pred CCccCCCCCHHHHHHHhhCCCCCC-CCCHHHHHHHHHHH
Confidence 344445788888888888765542 45566666655543
No 194
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=24.77 E-value=1.5e+02 Score=16.96 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=27.3
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHhhCC-CCCCCCHHHHHHHHHhc
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSALLGM-GMDGMTKEDAEAMVREG 87 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~-~~~~~~~~e~~~l~~~~ 87 (128)
..+..+...++....--+-..+|+.++..+|. -|...+++-+..+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34555566665444445667788888876530 01455677778888665
No 195
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=24.59 E-value=1.1e+02 Score=19.10 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=36.5
Q ss_pred hHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhc----CCCCCCCccHHHHHHHHHhc
Q 033062 37 FVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREG----DLDGDGALNETEFCILMVRL 107 (128)
Q Consensus 37 ~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~----d~~~~g~i~~~eF~~~l~~~ 107 (128)
....+..-|..+-. +|.|+...|-.. +|+ .-+.+=+.++|... ... ...|+.+|+..++...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~C---IGM---~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGEC---IGM---KDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHH---HT-----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHh---cCC---cccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 34677788888865 889999988864 452 33444444455432 222 4579999888877654
No 196
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=23.82 E-value=1.9e+02 Score=19.49 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.0
Q ss_pred hhhhcCCCCCccCHHHHHHHHHhhCC
Q 033062 45 FRLLADRDSGLITPGSLRQNSALLGM 70 (128)
Q Consensus 45 F~~~D~~~~g~I~~~el~~~l~~~g~ 70 (128)
=+.++.+....|.++.+..+|..+|+
T Consensus 56 neic~~e~KKTIa~EHV~KALe~LgF 81 (156)
T KOG0871|consen 56 NEICNKEAKKTIAPEHVIKALENLGF 81 (156)
T ss_pred HHHHhHHhcccCCHHHHHHHHHHcch
Confidence 34556788889999999999999995
No 197
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.04 E-value=1.7e+02 Score=17.55 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=33.3
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCC
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPG 110 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 110 (128)
+.|.+|.++...+-. . +.+.+.++.++...- ..|.-.|..|+.++...+.+
T Consensus 31 ~~gvlt~~~~~~I~~-~-----~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 31 QKDILTDSMAESIMA-K-----PTSFSQNVALLNLLP--KRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HcCCCCHHHHHHHHc-C-----CCcHHHHHHHHHHHH--HhChhHHHHHHHHHHhcChH
Confidence 457888887665432 2 234566677776653 35667899999999865443
No 198
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.37 E-value=3.7e+02 Score=21.68 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcCCCCCccCHHHHHHHHHh-hCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhc--CCCchhhH
Q 033062 39 SELCGGFRLLADRDSGLITPGSLRQNSAL-LGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRL--SPGMMQDA 115 (128)
Q Consensus 39 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~-~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~--~~~~~~~~ 115 (128)
+.++.+-+.+|.|.+|.|+.+|=-.+++. +. ...... +--+.+- ..|.+|+.++.-..+... ..=-.+..
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk-----y~~~~~-kr~~~fH-~dD~~ItVedLWeaW~~Sev~nWT~e~t 140 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMK-----YRDSTR-KRSEKFH-GDDKHITVEDLWEAWKESEVHNWTNERT 140 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhh-----cccchh-hhhhhcc-CCccceeHHHHHHHHHhhhhhcchHHHH
Confidence 67888899999999999999998777775 22 111111 1111221 246789999977777641 12222566
Q ss_pred HHHHHH
Q 033062 116 EAWLQK 121 (128)
Q Consensus 116 ~~~~~~ 121 (128)
-+||-.
T Consensus 141 vqWLi~ 146 (575)
T KOG4403|consen 141 VQWLIN 146 (575)
T ss_pred HHHHHH
Confidence 777643
No 199
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=22.23 E-value=1.2e+02 Score=18.14 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=11.0
Q ss_pred CCCccCHHHHHHHHHhh
Q 033062 52 DSGLITPGSLRQNSALL 68 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~ 68 (128)
-||.++.+|...+.+.+
T Consensus 15 aDG~v~~~E~~~i~~~l 31 (111)
T cd07176 15 ADGDIDDAELQAIEALL 31 (111)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 35777777766666554
No 200
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=21.81 E-value=1.9e+02 Score=17.87 Aligned_cols=25 Identities=8% Similarity=0.213 Sum_probs=14.3
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 033062 55 LITPGSLRQNSALLGMGMDGMTKEDAEAMV 84 (128)
Q Consensus 55 ~I~~~el~~~l~~~g~~~~~~~~~e~~~l~ 84 (128)
.++..+++.+.+.+| +++.+++.+-
T Consensus 17 ~~~~~~wK~faR~lg-----lse~~Id~I~ 41 (97)
T cd08316 17 VMTLKDVKKFVRKSG-----LSEPKIDEIK 41 (97)
T ss_pred HcCHHHHHHHHHHcC-----CCHHHHHHHH
Confidence 456666777777766 4444444443
No 201
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=21.33 E-value=2e+02 Score=18.09 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHh
Q 033062 75 MTKEDAEAMVRE 86 (128)
Q Consensus 75 ~~~~e~~~l~~~ 86 (128)
-+.++++.++..
T Consensus 79 ~~~dElrai~~~ 90 (112)
T PRK14981 79 ETRDELRAIFAK 90 (112)
T ss_pred CCHHHHHHHHHH
Confidence 344455555443
No 202
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.72 E-value=2e+02 Score=17.09 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=34.0
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCCc
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPGM 111 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~~ 111 (128)
+.|.+|.++...+-. . .-..+.++.++...-. .|.-.|..|+.++...+.++
T Consensus 27 ~~~Vlt~~~~e~I~~-~-----~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 27 SRGVFTPDMIEEIQA-A-----GSRRDQARQLLIDLET--RGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred hcCCCCHHHHHHHHc-C-----CCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCchH
Confidence 457788777665442 2 2345566777766533 46677999999998766553
No 203
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=20.51 E-value=1.9e+02 Score=16.72 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=12.7
Q ss_pred CCCccCHHHHHHHHHh
Q 033062 52 DSGLITPGSLRQNSAL 67 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~ 67 (128)
..|++..+|+..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 5688888998888754
No 204
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.40 E-value=1.1e+02 Score=27.28 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred cCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCC
Q 033062 49 ADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDG 91 (128)
Q Consensus 49 D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~ 91 (128)
|.=-.|.||.+.+..++..+| ...+.+++..+|..++.+.
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG---~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIG---FGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhc---CCCCHHHHHHHHHHhcccH
Confidence 344579999999999999999 6888888888888765543
No 205
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.19 E-value=2.2e+02 Score=17.35 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=37.4
Q ss_pred CCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhcCCC
Q 033062 52 DSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVREGDLDGDGALNETEFCILMVRLSPG 110 (128)
Q Consensus 52 ~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~l~~~~~~ 110 (128)
+.|.+|.+....+-...+ ..-..+.++.++.... .|.=-|..|+.++......
T Consensus 30 ~~~ilT~~d~e~I~aa~~---~~g~~~~ar~LL~~L~---rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 30 EQGLLTEEDRNRIEAATE---NHGNESGARELLKRIV---QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred hcCCCCHHHHHHHHHhcc---ccCcHHHHHHHHHHhc---cCCcHHHHHHHHHHHcCch
Confidence 456788877777666544 3345677888888775 4455689999999987664
No 206
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.14 E-value=2.3e+02 Score=17.53 Aligned_cols=49 Identities=16% Similarity=-0.017 Sum_probs=23.5
Q ss_pred ChHHHHHHHhhhhcCCCCCccCHHHHHHHHHhhCCCCCCCCHHHHHHHHHh
Q 033062 36 SFVSELCGGFRLLADRDSGLITPGSLRQNSALLGMGMDGMTKEDAEAMVRE 86 (128)
Q Consensus 36 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~~~~~~~~e~~~l~~~ 86 (128)
-.++++..+-..+-.++...++..++..++..+-- ..++.++++.+-..
T Consensus 36 Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~--~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 36 LTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTD--ELPTPEDIERVRAR 84 (96)
T ss_dssp S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCS--S-S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--CCcCHHHHHHHHHH
Confidence 44455555555444444444566666666655431 44555666555443
Done!