BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033063
MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF
VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP
RYAKEKKG

High Scoring Gene Products

Symbol, full name Information P value
AT5G39600 protein from Arabidopsis thaliana 6.9e-47
mRpL53
mitochondrial ribosomal protein L53 		protein from Drosophila melanogaster 0.00062

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033063
        (128 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2164885 - symbol:AT5G39600 "AT5G39600" species...   491  6.9e-47   1
FB|FBgn0050481 - symbol:mRpL53 "mitochondrial ribosomal p...    91  0.00062   1


>TAIR|locus:2164885 [details] [associations]
            symbol:AT5G39600 "AT5G39600" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
            cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
            biosynthetic process" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR Gene3D:3.40.30.10 InterPro:IPR012336
            SUPFAM:SSF52833 InterPro:IPR019716 Pfam:PF10780 EMBL:AY054662
            EMBL:AY072468 IPI:IPI00528659 RefSeq:NP_198776.1 UniGene:At.21744
            UniGene:At.24451 ProteinModelPortal:Q940G3 STRING:Q940G3
            PaxDb:Q940G3 PRIDE:Q940G3 EnsemblPlants:AT5G39600.1 GeneID:833956
            KEGG:ath:AT5G39600 TAIR:At5g39600 eggNOG:NOG257589
            InParanoid:Q940G3 OMA:TEQMFRE PhylomeDB:Q940G3
            ProtClustDB:CLSN2687338 Genevestigator:Q940G3 Uniprot:Q940G3
        Length = 127

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 93/127 (73%), Positives = 106/127 (83%)

Query:     1 MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
             MLKFLSKVRIEFN LDPR+ASC+EFLAQCNA KAKESNP CQ+ VKRRTD+ PP+I VTF
Sbjct:     1 MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query:    61 VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGIKP 120
             V G EE FDA +TSA +IR MIL+KGQ LE EQMFR+AG  WPV+IPDEEL Q   G+KP
Sbjct:    61 VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVKP 120

Query:   121 RYAKEKK 127
             R A++KK
Sbjct:   121 RKAEDKK 127


>FB|FBgn0050481 [details] [associations]
            symbol:mRpL53 "mitochondrial ribosomal protein L53"
            species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
            large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0032543 "mitochondrial
            translation" evidence=IC] EMBL:AE013599 GO:GO:0005840
            InterPro:IPR019716 Pfam:PF10780 CTD:116540 EMBL:BT072874
            RefSeq:NP_725343.1 UniGene:Dm.20889 EnsemblMetazoa:FBtr0100285
            GeneID:3772367 KEGG:dme:Dmel_CG30481 UCSC:CG30481-RA
            FlyBase:FBgn0050481 eggNOG:NOG302448 InParanoid:A1Z9J6 OMA:LCNKHVS
            OrthoDB:EOG43FFD9 NextBio:853476 Uniprot:A1Z9J6
        Length = 155

 Score = 91 (37.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query:     2 LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFV 61
             LK + ++ ++F+     + S  EFL   + PK   +NP C ++ +   D  P  IK   +
Sbjct:    28 LKGVKRITVQFDPFAENVKSTREFLFLLSTPKVAATNPKCVVKPEIVCDRQPANIKFALI 87

Query:    62 TGAEE 66
               A+E
Sbjct:    88 DSAQE 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.00u 0.13s 13.13t   Elapsed:  00:00:00
  Total cpu time:  13.00u 0.13s 13.13t   Elapsed:  00:00:00
  Start:  Mon May 20 20:52:08 2013   End:  Mon May 20 20:52:08 2013

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