BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033063
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AU1|A Chain A, Crystal Structure Of Group A Streptococcus Mac-1
           Orthorhombic Form
          Length = 292

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 44  QVKRRTDDHPPEIKVTFVTGAEEVFD---ATSTSAHTIRSMILE 84
           Q+KR  ++HP + K+ F    E++FD   A  T  H + S + E
Sbjct: 66  QIKRYLEEHPEKQKINF--NGEQMFDVKEAIDTKNHQLDSKLFE 107


>pdb|2AVW|A Chain A, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
 pdb|2AVW|B Chain B, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
 pdb|2AVW|C Chain C, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
 pdb|2AVW|D Chain D, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
 pdb|2AVW|E Chain E, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
 pdb|2AVW|F Chain F, Crystal Structure Of Monoclinic Form Of Streptococcus
           Mac-1
          Length = 311

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 44  QVKRRTDDHPPEIKVTFVTGAEEVFD---ATSTSAHTIRSMILE 84
           Q+KR  ++HP + K+ F    E++FD   A  T  H + S + E
Sbjct: 85  QIKRYLEEHPEKQKINF--NGEQMFDVKEAIDTKNHQLDSKLFE 126


>pdb|1Y08|A Chain A, Structure Of The Streptococcal Endopeptidase Ides, A Novel
           Cysteine Proteinase With Strict Specificity For Igg
          Length = 323

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 44  QVKRRTDDHPPEIKVTFVTGAEEVFD---ATSTSAHTIRSMILE 84
           Q+KR  ++HP + K+ F    E++FD   A  T  H + S + E
Sbjct: 97  QIKRYLEEHPEKQKINF--NGEQMFDVKEAIDTKNHQLDSKLFE 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,578,980
Number of Sequences: 62578
Number of extensions: 125505
Number of successful extensions: 182
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)