BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033063
         (128 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2HJF1|RM53_BOVIN 39S ribosomal protein L53, mitochondrial OS=Bos taurus GN=MRPL53
          PE=1 SV=1
          Length = 112

 Score = 32.3 bits (72), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 2  LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFV 61
          L+ + +VR++F   +  + S   FL   ++ K + +N  C +    R D   P + V F 
Sbjct: 10 LRSVKQVRVQFCPFEKNVESTRTFLQAVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFG 69

Query: 62 TG 63
           G
Sbjct: 70 DG 71


>sp|Q3IKB8|DNLJ_PSEHT DNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC 125)
           GN=ligA PE=3 SV=1
          Length = 673

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 66  EVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPVLIPDEELQQPMAGI 118
           +V D     A  +RS   E+   L+      + G+NWP L P    +QP+AG+
Sbjct: 549 QVSDVGEIVATHVRSFFAEQ-HNLDVVNALVEQGINWPELTPPSAQEQPLAGL 600


>sp|Q54D99|RM53_DICDI Probable 39S ribosomal protein L53, mitochondrial
          OS=Dictyostelium discoideum GN=mrpl53 PE=3 SV=1
          Length = 129

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 1  MLKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTF 60
          +L  L  V  +F+ L+P   S   F+      ++++  P C I       +  P I + F
Sbjct: 7  LLAKLKSVVYKFDPLNPNTRSIRSFIPLTTCKRSRQLAPECSISFDLGPQNTSPVIDIKF 66

Query: 61 VTGAEE 66
          V G E+
Sbjct: 67 VNGTEK 72


>sp|Q96EL3|RM53_HUMAN 39S ribosomal protein L53, mitochondrial OS=Homo sapiens
          GN=MRPL53 PE=1 SV=1
          Length = 112

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 2  LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFV 61
          L+ + +VR++F   +  + S   FL   ++ K + +N  C +    R D   P + V F 
Sbjct: 10 LRPVKQVRVQFCPFEKNVESTRTFLQTVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFG 69

Query: 62 TG 63
           G
Sbjct: 70 DG 71


>sp|Q5RB44|RM53_PONAB 39S ribosomal protein L53, mitochondrial OS=Pongo abelii
          GN=MRPL53 PE=3 SV=1
          Length = 112

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 2  LKFLSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFV 61
          L+ + +VR++F   +  + S   FL   ++ K + +N  C +    R D   P + V F 
Sbjct: 10 LRPVKQVRVQFCPFEKNVESTRTFLQAVSSEKVRSTNLNCPVIADVRHDGSEPCVDVLFG 69

Query: 62 TG 63
           G
Sbjct: 70 DG 71


>sp|P39599|YWCA_BACSU Uncharacterized symporter YwcA OS=Bacillus subtilis (strain 168)
           GN=ywcA PE=3 SV=2
          Length = 513

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 61  VTGAEEVFDATSTSAHTIRSMILEKGQMLENEQM 94
           VTG   V  A S  AH I S I+ KG+  E EQM
Sbjct: 337 VTGL--VLSAASAFAHDIYSQIIRKGEATEKEQM 368


>sp|Q5E4V6|RBSA_VIBF1 Ribose import ATP-binding protein RbsA OS=Vibrio fischeri (strain
           ATCC 700601 / ES114) GN=rbsA PE=3 SV=1
          Length = 504

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 36  ESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89
           + +   ++ V RR D+  P I V     + E+FD +    H + S  L++G++L
Sbjct: 230 DEDTLIEMMVGRRLDEQYPRIDVQHGEKSLELFDVSGPGVHNV-SFSLDRGEIL 282


>sp|Q9D1H8|RM53_MOUSE 39S ribosomal protein L53, mitochondrial OS=Mus musculus
          GN=Mrpl53 PE=2 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 8  VRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTG 63
          VR++F   +  + S   FL   ++ K + +N  C +    R D   P + V F  G
Sbjct: 16 VRVQFCPFEKNVESTRTFLQTVSSEKVRATNLNCSVIADVRHDGSEPCVDVLFGDG 71


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,251,836
Number of Sequences: 539616
Number of extensions: 1665131
Number of successful extensions: 3261
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3253
Number of HSP's gapped (non-prelim): 12
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)