Query 033063
Match_columns 128
No_of_seqs 102 out of 122
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3a_A NADH-ubiquinone oxidore 99.6 3.1E-15 1.1E-19 104.9 9.9 80 5-86 19-98 (102)
2 2a2p_A Selenoprotein M, SELM p 46.4 55 0.0019 23.4 5.9 74 5-86 14-90 (129)
3 1ha6_A Macrophage inflammatory 44.8 21 0.00072 22.2 3.2 37 53-89 34-70 (70)
4 1mi2_A Macrophage inflammatory 42.3 37 0.0013 21.2 4.1 35 53-87 37-71 (73)
5 2auw_A Hypothetical protein NE 39.0 33 0.0011 25.4 4.0 50 53-110 19-73 (170)
6 2kmm_A Guanosine-3',5'-BIS(dip 38.9 37 0.0013 20.3 3.6 26 56-82 3-28 (73)
7 2dig_A Lamin-B receptor; tudor 38.6 23 0.0008 22.9 2.6 22 51-72 39-60 (68)
8 2l8d_A Lamin-B receptor; DNA b 38.4 21 0.0007 23.0 2.3 21 51-71 36-56 (66)
9 1tvx_A NAP-2, neutrophil activ 37.6 39 0.0013 21.4 3.7 35 53-87 38-72 (75)
10 1eot_A Eotaxin; cytokine, chem 37.4 39 0.0013 21.1 3.7 37 53-89 36-72 (74)
11 4dsd_A Putative periplasmic pr 36.1 76 0.0026 22.0 5.3 45 19-71 13-59 (129)
12 1yn3_A EAP2, truncated cell su 35.4 24 0.00081 24.3 2.4 50 9-72 28-77 (98)
13 2ra4_A Small-inducible cytokin 35.2 24 0.00084 22.4 2.4 48 43-90 27-75 (76)
14 1sc3_B Interleukin-1 beta conv 33.7 25 0.00087 22.9 2.3 30 75-104 34-63 (88)
15 1yn4_A EAPH1; virulence factor 33.3 26 0.0009 24.2 2.4 49 10-72 30-78 (99)
16 1wgr_A Growth factor receptor- 33.1 62 0.0021 22.0 4.3 37 52-88 8-45 (100)
17 1icw_A Interleukin-8, IL-8; cy 32.0 51 0.0017 20.6 3.5 35 53-87 36-70 (72)
18 2ql9_B Caspase-7; cysteine pro 32.0 28 0.00095 22.9 2.3 28 75-102 36-63 (97)
19 1wwt_A Threonyl-tRNA synthetas 31.8 71 0.0024 20.0 4.2 30 53-82 9-38 (88)
20 1esr_A MCP-2, monocyte chemota 30.2 44 0.0015 21.0 3.0 37 53-89 38-74 (76)
21 1m8a_A Small inducible cytokin 30.1 38 0.0013 21.0 2.6 36 53-88 34-69 (70)
22 1f9p_A CTAP-III, connective ti 30.0 46 0.0016 21.6 3.1 35 53-87 48-82 (85)
23 3p8d_A Medulloblastoma antigen 29.8 35 0.0012 21.7 2.4 20 54-73 34-53 (67)
24 2i1u_A Thioredoxin, TRX, MPT46 29.4 51 0.0017 20.5 3.2 76 8-88 33-119 (121)
25 1yn5_A EAPH2; virulence factor 28.9 30 0.001 24.0 2.1 49 9-71 31-79 (103)
26 1f9q_A Platelet factor 4; bloo 28.9 62 0.0021 20.0 3.5 32 53-84 38-69 (70)
27 3zzx_A Thioredoxin; oxidoreduc 28.9 1.1E+02 0.0037 19.5 4.9 71 8-85 23-104 (105)
28 1mgs_A Human melanoma growth s 28.7 66 0.0023 20.0 3.6 34 53-86 37-70 (73)
29 1dok_A MCP-1, MCAF, monocyte c 28.1 58 0.002 20.5 3.3 37 53-89 39-75 (77)
30 3uvt_A Thioredoxin domain-cont 27.8 1E+02 0.0035 18.5 5.0 35 51-86 77-111 (111)
31 1pyo_B Caspase-2; apoptosis, c 27.7 36 0.0012 22.8 2.3 29 75-103 40-68 (105)
32 1f2l_A Fractalkine; chemoattra 27.7 49 0.0017 21.0 2.9 37 53-89 36-72 (76)
33 1lv9_A Small inducible cytokin 27.6 79 0.0027 19.9 3.9 34 53-86 38-72 (77)
34 3fpu_B C-C motif chemokine 3; 27.4 28 0.00096 21.7 1.6 34 53-86 37-70 (70)
35 2b7k_A SCO1 protein; metalloch 27.0 57 0.0019 23.1 3.4 99 5-104 79-196 (200)
36 3luu_A Uncharacterized protein 25.6 98 0.0034 20.2 4.2 37 46-91 11-47 (101)
37 2dko_B Caspase-3; low barrier 24.9 43 0.0015 22.3 2.3 28 75-102 42-69 (103)
38 1qtn_B Caspase-8; apoptosis, d 24.8 48 0.0016 21.8 2.5 29 75-103 38-67 (95)
39 3db7_A Putative calcium-regula 24.7 1E+02 0.0034 21.2 4.3 44 19-70 14-58 (127)
40 2daf_A FLJ35834 protein; hypot 22.5 1.8E+02 0.0061 20.3 5.2 39 47-85 7-49 (118)
41 1mby_A SAK, serine/threonine k 22.2 55 0.0019 22.1 2.3 18 55-72 24-41 (88)
42 2kzr_A Ubiquitin thioesterase 22.2 92 0.0031 19.4 3.4 32 55-87 2-35 (86)
43 1s3s_G P47 protein; AAA ATPase 21.9 1.2E+02 0.0042 20.8 4.3 36 51-86 50-86 (127)
44 3qii_A PHD finger protein 20; 21.7 61 0.0021 21.6 2.5 22 52-73 47-68 (85)
45 3ul3_B Thioredoxin, thioredoxi 21.5 1.5E+02 0.005 18.9 4.5 73 8-85 45-128 (128)
46 2dzk_A UBX domain-containing p 21.0 1.5E+02 0.0052 19.7 4.5 32 54-85 14-46 (109)
47 2cu3_A Unknown function protei 21.0 66 0.0022 19.2 2.4 22 60-83 3-24 (64)
48 3qx1_A FAS-associated factor 1 20.7 1.6E+02 0.0055 18.3 4.4 30 55-85 9-40 (84)
49 3rjm_B Caspase-2; caspase-2, c 20.7 58 0.002 22.4 2.3 29 75-103 41-69 (117)
50 3qij_A Protein 4.1; cytoskelet 20.2 1.3E+02 0.0043 23.2 4.5 39 51-89 15-54 (296)
51 1wj4_A KIAA0794 protein; UBX d 20.0 1.5E+02 0.0052 20.3 4.4 32 53-85 43-76 (124)
No 1
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=99.62 E-value=3.1e-15 Score=104.94 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=74.0
Q ss_pred ceEEEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHH
Q 033063 5 LSKVRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILE 84 (128)
Q Consensus 5 lkkV~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~ 84 (128)
|++|+|.||+++++++++|+||.. .-+.++..||+|.|.+.... ..+|.|.+.|.||.+..+|++|++..||.+.+..
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~-~l~~~k~~NP~v~i~v~~~~-~~~P~i~a~Y~~G~ek~i~l~n~s~~eI~~~l~~ 96 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEK-RYVELKKANPDLPILIRECS-DVQPKLWARYAFGQETNVPLNNFSADQVTRALEN 96 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHH-THHHHHHHSTTCCEEEECCC-SSSCEEEEEESSCCEEEEECTTCCHHHHHHHHHH
T ss_pred eeEEEEEEcCCCCCchhHHHHHHH-hhHHHHHHCCCceEEEEECC-CCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHH
Confidence 999999999999999999999997 78999999999999976444 5899999999999999999999999999999887
Q ss_pred hc
Q 033063 85 KG 86 (128)
Q Consensus 85 ~s 86 (128)
..
T Consensus 97 l~ 98 (102)
T 1s3a_A 97 VL 98 (102)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 2
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=46.36 E-value=55 Score=23.44 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=48.8
Q ss_pred ceEEEEEecCCCCC--cHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCc-EEEEecCCCCHHHHHHH
Q 033063 5 LSKVRIEFNALDPR--IASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGA-EEVFDATSTSAHTIRSM 81 (128)
Q Consensus 5 lkkV~V~FnPF~~~--aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~-e~~~d~~~~t~~eI~~~ 81 (128)
..+..+.=|+-..- =.-+..|+-. . ....|+++|+.... .+|.|.+-=.+|+ .++++.++++..+|.+.
T Consensus 14 yarA~lEvC~~CkL~~~PeIk~FIk~---d--~~~y~~v~Vkyi~G---a~P~LvL~D~~G~e~E~I~Iekw~~d~I~ef 85 (129)
T 2a2p_A 14 LARGRVETCGGCQLNRLKEVKAFVTE---D--IQLYHNLVMKHLPG---ADPELVLLSRNYQELERIPLSQMTRDEINAL 85 (129)
T ss_dssp CCEEEEEEETTCCCSTTHHHHHHTTT---H--HHHBTTEEEEEESS---CCCEEEEECSSSCCCEEEECSSSCHHHHHHH
T ss_pred cceEEEEECCCcccccchhHHHHHhC---c--hhhcCceeEEEeCC---CCCEEEEecCCCCEEEEeecccCCHHHHHHH
Confidence 34445555542221 2346667664 3 23389999888765 6798888667776 58999999999999665
Q ss_pred HHHhc
Q 033063 82 ILEKG 86 (128)
Q Consensus 82 i~~~s 86 (128)
+.+++
T Consensus 86 L~e~G 90 (129)
T 2a2p_A 86 VQELG 90 (129)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 55543
No 3
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=44.78 E-value=21 Score=22.20 Aligned_cols=37 Identities=5% Similarity=-0.060 Sum_probs=32.9
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L 89 (128)
.+.|.++.++|.+.=+|++.-=++++++.++...++|
T Consensus 34 ~~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~~~ 70 (70)
T 1ha6_A 34 INAIIFHTKKRKSVCADPKQNWVKRAVNLLSLRVKKM 70 (70)
T ss_dssp SCEEEEEESSSSSEEECTTSHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEecCCCEEeCCCChHHHHHHHHHHHHhhhcC
Confidence 5788899999999999999999999999999887654
No 4
>1mi2_A Macrophage inflammatory protein-2; MIP-2, chemokine, cytokine; NMR {Mus musculus} SCOP: d.9.1.1 PDB: 3n52_A
Probab=42.25 E-value=37 Score=21.25 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.2
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQ 87 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~ 87 (128)
.+.|.++.++|.+.=+|++.-=++++++.++...+
T Consensus 37 ~~aVIf~tk~g~~vC~dP~~~wVk~~ik~l~~~~~ 71 (73)
T 1mi2_A 37 QTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKGK 71 (73)
T ss_dssp SCEEEEEETTTEEEEESSSCSTTHHHHHHHHSTTC
T ss_pred CcEEEEEecCCCeEecCCchHHHHHHHHHHHhhcc
Confidence 47888999999999999999999999999987654
No 5
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=38.96 E-value=33 Score=25.40 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHh--ccccchHHHHHhcCCC---CCcccCccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEK--GQMLENEQMFRDAGLN---WPVLIPDEE 110 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~--s~~L~~~e~~~~~g~~---~~~~~p~e~ 110 (128)
.=.+.|+|.||.+..+|. ..+|..+ =+.|+=.+.|+.+... +.+.-|.++
T Consensus 19 ~Y~L~v~F~dGe~~~~Dl--------~pll~~~~~F~~LkD~~~F~~v~V~~~g~tV~W~~g~ 73 (170)
T 2auw_A 19 PYRLRTTWSTGEVLEVDV--------GDILRKIPDLAPILDPEAFARVHIAEWEGSVEWFDTE 73 (170)
T ss_dssp TTEEEEEETTSCEEEEEC--------HHHHHHCGGGGGGGSHHHHTTCEECTTTCCEESSSCC
T ss_pred CeEEEEEEeCCCEEEEEh--------HHhhccCchhhhhcCHHHhCcEEEcCCCCEEEcCCCC
Confidence 358999999999999995 4455432 2567778899988776 355556554
No 6
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=38.86 E-value=37 Score=20.32 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.0
Q ss_pred EEEEeeCCcEEEEecCCCCHHHHHHHH
Q 033063 56 IKVTFVTGAEEVFDATSTSAHTIRSMI 82 (128)
Q Consensus 56 I~Vtf~dG~e~~~d~~~~t~~eI~~~i 82 (128)
|.|++.||+...+. +..|+.+++..+
T Consensus 3 i~i~~p~g~~~~~~-~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLP-QGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEEC-TTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcC-CCCcHHHHHHHH
Confidence 67888899998886 579999998887
No 7
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=38.58 E-value=23 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.9
Q ss_pred CCCCeEEEEeeCCcEEEEecCC
Q 033063 51 DHPPEIKVTFVTGAEEVFDATS 72 (128)
Q Consensus 51 ~~~P~I~Vtf~dG~e~~~d~~~ 72 (128)
...|.-.|.|+||.++.+...+
T Consensus 39 s~~~~Y~VkfKdgT~e~L~~kD 60 (68)
T 2dig_A 39 STSQLYTVKYKDGTELELKEND 60 (68)
T ss_dssp TTTTEEEEECTTSCEEEEETTT
T ss_pred cCCceEEEEecCCCEEEechhc
Confidence 5789999999999999987543
No 8
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=38.39 E-value=21 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.4
Q ss_pred CCCCeEEEEeeCCcEEEEecC
Q 033063 51 DHPPEIKVTFVTGAEEVFDAT 71 (128)
Q Consensus 51 ~~~P~I~Vtf~dG~e~~~d~~ 71 (128)
...|.-.|.|+||.++.+...
T Consensus 36 s~~~~Y~V~fKdgT~e~L~~k 56 (66)
T 2l8d_A 36 DASHLYTVKYKDGTELALKES 56 (66)
T ss_dssp TTTTEEEEEETTSCEEEEEGG
T ss_pred cCCceEEEEecCCCEEeechh
Confidence 578999999999999998754
No 9
>1tvx_A NAP-2, neutrophil activating peptide 2 variant; cytokine; 1.75A {Homo sapiens} SCOP: d.9.1.1 PDB: 1nap_A
Probab=37.60 E-value=39 Score=21.38 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQ 87 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~ 87 (128)
.+.|.++.++|.+.=+|++.-=++++++.++.+.+
T Consensus 38 ~~~VIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~ 72 (75)
T 1tvx_A 38 QVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDE 72 (75)
T ss_dssp SCEEEEEETTSCEEEECTTCHHHHHHHHHHHHTC-
T ss_pred CCEEEEEecCCCeEecCCChHHHHHHHHHHHhccc
Confidence 47888999999999999999999999998887654
No 10
>1eot_A Eotaxin; cytokine, chemokine, protein synthesis, solution structure, CCR3, eosinophil; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2eot_A
Probab=37.35 E-value=39 Score=21.15 Aligned_cols=37 Identities=5% Similarity=-0.054 Sum_probs=32.7
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L 89 (128)
.+.|.++.++|.+.=+|++.-=++++++.++..+++.
T Consensus 36 ~~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~~~ 72 (74)
T 1eot_A 36 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTP 72 (74)
T ss_dssp SCEEEEEETTSCEEEECTTCHHHHHHHHHHHHHSCSS
T ss_pred CcEEEEEeCCCCEEeCCCChHHHHHHHHHHHHhcccC
Confidence 4788899999999999999999999999999887654
No 11
>4dsd_A Putative periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.75A {Bacteroides ovatus}
Probab=36.07 E-value=76 Score=21.96 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred cHHHHHHHhhcCchhhhhcCCCceEEEEecCC-CCC-CeEEEEeeCCcEEEEecC
Q 033063 19 IASCMEFLAQCNAPKAKESNPACQIQVKRRTD-DHP-PEIKVTFVTGAEEVFDAT 71 (128)
Q Consensus 19 aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d-~~~-P~I~Vtf~dG~e~~~d~~ 71 (128)
-..|+.|+..- .|+.+|..--+.+ .-. ..-+|.|.||.+..||..
T Consensus 13 P~~a~~fi~~~--------Fp~~~i~~ve~e~~~~~~~~YeV~l~~G~ei~Fd~~ 59 (129)
T 4dsd_A 13 PLPARNFINSN--------FTKPQVAHIKIDKDMMESTKYEVVLMDGTEIDFDSK 59 (129)
T ss_dssp CHHHHHHHHHH--------SSSCCEEEEEEEECTTSCEEEEEEETTSCEEEECTT
T ss_pred CHHHHHHHHHH--------CCCCceEEEEEecCcCCCccEEEEECCCcEEEEeCC
Confidence 35778887662 5555554443332 112 688999999999999853
No 12
>1yn3_A EAP2, truncated cell surface protein MAP-W; virulence-factor, toxin, extracellular-adherence protein, protein binding; 1.35A {Staphylococcus aureus}
Probab=35.36 E-value=24 Score=24.35 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=34.9
Q ss_pred EEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCC
Q 033063 9 RIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATS 72 (128)
Q Consensus 9 ~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~ 72 (128)
.+.|.-++..++|+-..=.-|+....+ . .....-.|+|+||.+.++|-.+
T Consensus 28 ~i~ykdL~~KVKS~L~~~rgIt~~di~-------------~-ak~A~YTV~fknG~KkvI~LKs 77 (98)
T 1yn3_A 28 NISYKDLEGKVKSVLESNRGITDVDLR-------------L-SKQAKYTVNFKNGTKKVIDLKS 77 (98)
T ss_dssp EEEHHHHHHHHHHHHHHHHCCCHHHHH-------------H-SSCEEEEEEETTSCEEEEETTC
T ss_pred ceeHHHHHHHHHHHHHhhcCCCHHHhh-------------h-hheeEEEEEEcCCcEEEEEccc
Confidence 345555566667776666666666544 1 2567889999999999998653
No 13
>2ra4_A Small-inducible cytokine A13; CCL13, MCP-4, CC chemokine family, chemotaxis, monocytes, CY inflammatory response, pyrrolidone carboxylic acid; 1.70A {Homo sapiens}
Probab=35.20 E-value=24 Score=22.36 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=32.4
Q ss_pred EEEEecCCCC-CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhccccc
Q 033063 43 IQVKRRTDDH-PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLE 90 (128)
Q Consensus 43 I~~~v~~d~~-~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L~ 90 (128)
..+.+.+..+ .+.|.++.++|.+.=+|++.-=++++++.++..++++.
T Consensus 27 ~~y~~~~~~C~~~aVIf~tk~g~~vCadP~~~WVq~~ik~l~~~~~~~~ 75 (76)
T 2ra4_A 27 KSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLK 75 (76)
T ss_dssp EEEEECCTTSSSCCEEEEETTSCEEEECTTSHHHHHHHHHHC-------
T ss_pred eEEEECCCCCCCcEEEEEEcCCCEEeCCCChHHHHHHHHHHHhhccccC
Confidence 3444433334 57788999999999999999999999999998876653
No 14
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=33.68 E-value=25 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccccchHHHHHhcCCCCCc
Q 033063 75 AHTIRSMILEKGQMLENEQMFRDAGLNWPV 104 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L~~~e~~~~~g~~~~~ 104 (128)
++++.+.+..|+....+.++|..++..+..
T Consensus 34 Iq~Lc~~l~~~~~~~dl~~il~~V~~~v~~ 63 (88)
T 1sc3_B 34 IGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63 (88)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCCcCcHHHHHHHHHHHHhc
Confidence 789999999999999999999988877653
No 15
>1yn4_A EAPH1; virulence factor, toxin, extracellular adherence protein, unknown function; 1.80A {Staphylococcus aureus}
Probab=33.26 E-value=26 Score=24.15 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=32.1
Q ss_pred EEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecCC
Q 033063 10 IEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDATS 72 (128)
Q Consensus 10 V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~~ 72 (128)
+.|..++..++|+-..=.-|+....+ ......-.|+|+||.+.++|-.+
T Consensus 30 isykdl~~KVKS~L~~~rgIt~~di~--------------~ak~A~YTV~fkNG~KkvI~LK~ 78 (99)
T 1yn4_A 30 VLYQEIDSKVKNELASQRGVTTEKIN--------------NAQTATYTLTLNDGNKKVVNLKK 78 (99)
T ss_dssp EEHHHHHHHHHHHHHHHHCCCHHHHH--------------TSSCEEEEEEETTSCEEEEESSC
T ss_pred ccHHHHHHHHHHHHHhccCCCHHHHh--------------hhheeeEEEEEcCCcEEEEEccc
Confidence 34444455556665555555555444 22677889999999999998653
No 16
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.09 E-value=62 Score=21.96 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCCeEEEEeeCCcEEEEec-CCCCHHHHHHHHHHhccc
Q 033063 52 HPPEIKVTFVTGAEEVFDA-TSTSAHTIRSMILEKGQM 88 (128)
Q Consensus 52 ~~P~I~Vtf~dG~e~~~d~-~~~t~~eI~~~i~~~s~~ 88 (128)
.+=.|+|-+.||.-..++. +.||+.|+.+.+..+.+-
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~ 45 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHA 45 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCC
Confidence 3458899999999999865 489999999888877643
No 17
>1icw_A Interleukin-8, IL-8; cytokine, chemokine; 2.01A {Homo sapiens} SCOP: d.9.1.1 PDB: 1ikl_A* 1ikm_A* 1il8_A 1ilp_A* 1ilq_A* 2il8_A 3il8_A 1qe6_A 1rod_A
Probab=31.97 E-value=51 Score=20.55 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQ 87 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~ 87 (128)
.+.|.++.++|.+.=+||+.-=++++++.++...+
T Consensus 36 ~~aVIf~tk~g~~vC~dP~~~WVq~~ik~l~~~~~ 70 (72)
T 1icw_A 36 NTCIIVKLSDGRELALDPKENWVQRVVEKFLKRAE 70 (72)
T ss_dssp SCEEEEEETTSCEEEECTTSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEecCCCEEecCCchHHHHHHHHHHHhhcc
Confidence 47888999999999999999999999999987654
No 18
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=31.96 E-value=28 Score=22.90 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccccchHHHHHhcCCCC
Q 033063 75 AHTIRSMILEKGQMLENEQMFRDAGLNW 102 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L~~~e~~~~~g~~~ 102 (128)
++.+.+.+..|+....+.++|..+|..+
T Consensus 36 Iq~Lc~~l~~~~~~~dl~~ilt~Vn~~V 63 (97)
T 2ql9_B 36 VQALCSILEEHGKDLEIMQILTRVNDRV 63 (97)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999998666544
No 19
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=31.82 E-value=71 Score=19.98 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHH
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMI 82 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i 82 (128)
...|.|++.||....+..-..+..++...|
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i 38 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGI 38 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHh
Confidence 355899999999988875358999988776
No 20
>1esr_A MCP-2, monocyte chemotactic protein 2; cytokine, chemokine, monocyte chemoattractant protein, HIV- 1, pyroglutamic acid, X-RAY crystallography; 2.00A {Homo sapiens} SCOP: d.9.1.1
Probab=30.25 E-value=44 Score=21.01 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=32.2
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L 89 (128)
.+.|.++.++|.+.=+|++.-=++++++.++..+++.
T Consensus 38 ~~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~~~ 74 (76)
T 1esr_A 38 KEAVIFKTQRGKEVCADPKERWVRDSMKHLDQIFQNL 74 (76)
T ss_dssp SCCEEEEETTCCEEEECTTSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEecCCCEEeCCCChHHHHHHHHHHHhhccCC
Confidence 4678899999999999999999999999999876653
No 21
>1m8a_A Small inducible cytokine A20; CC-chemokine, IL-8 type dimer; 1.70A {Synthetic} SCOP: d.9.1.1 PDB: 2jyo_A 2hci_A
Probab=30.05 E-value=38 Score=20.97 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=28.9
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQM 88 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~ 88 (128)
.+.|.++.++|.+.=+|++.-=++++++.++....+
T Consensus 34 ~~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~~ 69 (70)
T 1m8a_A 34 INAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKN 69 (70)
T ss_dssp SCEEEEEETTCCEEEECTTSHHHHHHHHHHTC----
T ss_pred CcEEEEEecCCCEEeCCCChHHHHHHHHHHHHhhhc
Confidence 578888889999999999999999999998876554
No 22
>1f9p_A CTAP-III, connective tissue activating peptide-III; chemokine-heparin analog complex, blood clotting; 1.93A {Homo sapiens} SCOP: d.9.1.1
Probab=30.02 E-value=46 Score=21.63 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQ 87 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~ 87 (128)
.+.|.++.++|.+.=+||+.-=++++++.++.+..
T Consensus 48 ~~aVIf~tk~g~~vCadP~~~WVk~~ik~l~~~~~ 82 (85)
T 1f9p_A 48 QVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDE 82 (85)
T ss_dssp SCEEEEEETTSCEEEECTTCHHHHHHHHHHHCCC-
T ss_pred CCEEEEEecCCCeEecCCChHHHHHHHHHHHhccc
Confidence 37888999999999999999999999999887654
No 23
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=29.82 E-value=35 Score=21.72 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=17.3
Q ss_pred CeEEEEeeCCcEEEEecCCC
Q 033063 54 PEIKVTFVTGAEEVFDATST 73 (128)
Q Consensus 54 P~I~Vtf~dG~e~~~d~~~~ 73 (128)
+...|+|.||...++...++
T Consensus 34 ~~Y~V~F~dG~~etvk~~~i 53 (67)
T 3p8d_A 34 GTYTVKFYDGVVQTVKHIHV 53 (67)
T ss_dssp SEEEEEETTSCEEEEEGGGE
T ss_pred CeEEEEEeCCceEEEeHHHc
Confidence 78999999999999986554
No 24
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=29.40 E-value=51 Score=20.52 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=43.4
Q ss_pred EEEEecCCCCCcHHHHHHHhhcCchhhhhcCC-CceEEE-EecCC---------CCCCeEEEEeeCCcEEEEecCCCCHH
Q 033063 8 VRIEFNALDPRIASCMEFLAQCNAPKAKESNP-ACQIQV-KRRTD---------DHPPEIKVTFVTGAEEVFDATSTSAH 76 (128)
Q Consensus 8 V~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp-~c~I~~-~v~~d---------~~~P~I~Vtf~dG~e~~~d~~~~t~~ 76 (128)
+.|-| +++....|+.+...+. ++.+..+ ++.+.. .+..+ ..-|++.+ |.||+....-....+..
T Consensus 33 ~lv~f--~~~~C~~C~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~-~~~g~~~~~~~G~~~~~ 107 (121)
T 2i1u_A 33 VLVDF--WATWCGPCKMVAPVLE--EIATERATDLTVAKLDVDTNPETARNFQVVSIPTLIL-FKDGQPVKRIVGAKGKA 107 (121)
T ss_dssp EEEEE--ECTTCHHHHHHHHHHH--HHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE-EETTEEEEEEESCCCHH
T ss_pred EEEEE--ECCCCHHHHHHHHHHH--HHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEE-EECCEEEEEecCCCCHH
Confidence 44555 2355677777777653 2233332 343322 21111 56788755 68998876555667888
Q ss_pred HHHHHHHHhccc
Q 033063 77 TIRSMILEKGQM 88 (128)
Q Consensus 77 eI~~~i~~~s~~ 88 (128)
++.+.|+.+-.+
T Consensus 108 ~l~~~l~~~l~~ 119 (121)
T 2i1u_A 108 ALLRELSDVVPN 119 (121)
T ss_dssp HHHHHTCSCCCC
T ss_pred HHHHHHHHHHhh
Confidence 887777655433
No 25
>1yn5_A EAPH2; virulence factor, toxin, extracellular adherence protein, unknown function; 2.20A {Staphylococcus aureus}
Probab=28.92 E-value=30 Score=24.00 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=33.3
Q ss_pred EEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCCCCCCeEEEEeeCCcEEEEecC
Q 033063 9 RIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTDDHPPEIKVTFVTGAEEVFDAT 71 (128)
Q Consensus 9 ~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d~~~P~I~Vtf~dG~e~~~d~~ 71 (128)
.+.|..++..++|+-..=.-|+....+ . .....-.|+|+||.+.++|..
T Consensus 31 ~i~ykdL~~KVKS~L~~~rgIt~~di~-------------~-ak~A~YTV~fknG~KkvIdLK 79 (103)
T 1yn5_A 31 QLSYLDLGNKVKALLYDERGVTPEKIR-------------N-AKSAVYTITWKDGSKKEVDLK 79 (103)
T ss_dssp EEEHHHHHHHHHHHHHHHHCCCHHHHH-------------H-SSEEEEEEEETTSCEEEEEGG
T ss_pred cccHHHHHHHHHHHHHhhcCCCHHHhh-------------h-hheeEEEEEEcCCcEEEEEcc
Confidence 345555556666666666666655544 1 256678999999999999854
No 26
>1f9q_A Platelet factor 4; blood clotting; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 1rhp_A 1f9s_A 1f9r_A 1pfm_A 1pfn_A 1plf_A
Probab=28.89 E-value=62 Score=20.04 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHH
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILE 84 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~ 84 (128)
.+.|.++.++|.+.=+|++.-=++++++.++.
T Consensus 38 ~~~VIf~tk~g~~vC~dP~~~WVk~~i~~l~~ 69 (70)
T 1f9q_A 38 TAQLIATLKNGRKICLDLQAPLYKKIIKKLLE 69 (70)
T ss_dssp SCEEEEEETTSCEEECCSSSTHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCEEecCCChHHHHHHHHHHhc
Confidence 47888999999999999999999999988764
No 27
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=28.89 E-value=1.1e+02 Score=19.51 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=43.3
Q ss_pred EEEEecCCCCCcHHHHHHHhhcCchhhhhcCCCceEEEEecCC-----------CCCCeEEEEeeCCcEEEEecCCCCHH
Q 033063 8 VRIEFNALDPRIASCMEFLAQCNAPKAKESNPACQIQVKRRTD-----------DHPPEIKVTFVTGAEEVFDATSTSAH 76 (128)
Q Consensus 8 V~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp~c~I~~~v~~d-----------~~~P~I~Vtf~dG~e~~~d~~~~t~~ 76 (128)
|.|.|- .+-..++|.+...+. +..+.+++..+ ..+-.| ++-|++.+ |+||++..--. ..+..
T Consensus 23 vvv~F~--a~wC~~C~~~~p~~~--~~~~~~~~~~~-~~vd~d~~~~l~~~~~V~~~PT~~~-~~~G~~v~~~~-G~~~~ 95 (105)
T 3zzx_A 23 VVIDFY--ATWCGPCKMIAPKLE--ELSQSMSDVVF-LKVDVDECEDIAQDNQIACMPTFLF-MKNGQKLDSLS-GANYD 95 (105)
T ss_dssp EEEEEE--CTTCHHHHHHHHHHH--HHHHHCTTEEE-EEEETTTCHHHHHHTTCCBSSEEEE-EETTEEEEEEE-SCCHH
T ss_pred EEEEEE--CCCCCCccCCCcchh--hhhhccCCeEE-EEEecccCHHHHHHcCCCeecEEEE-EECCEEEEEEe-CcCHH
Confidence 556663 455666666666553 23455677543 333322 56788655 79998764322 25788
Q ss_pred HHHHHHHHh
Q 033063 77 TIRSMILEK 85 (128)
Q Consensus 77 eI~~~i~~~ 85 (128)
+|.+.|+.|
T Consensus 96 ~l~~~i~k~ 104 (105)
T 3zzx_A 96 KLLELVEKN 104 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 898888876
No 28
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=28.67 E-value=66 Score=20.00 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKG 86 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s 86 (128)
.+.|.++.++|++.=+|++.-=++++++.++.+.
T Consensus 37 ~~aVIf~tk~g~~vC~dP~~~wVk~~i~~l~~~~ 70 (73)
T 1mgs_A 37 QTEVIATLKNGRKACLNPASPIVKKIIEKMLNSD 70 (73)
T ss_dssp SCEEEEEETTSCEEEECTTSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCEEecCCChHHHHHHHHHHHhhc
Confidence 4788899999999999999999999999988753
No 29
>1dok_A MCP-1, MCAF, monocyte chemoattractant protein 1; cytokine,; 1.85A {Homo sapiens} SCOP: d.9.1.1 PDB: 1dol_A 1dom_A 1don_A 2bdn_A 3ifd_A 2nz1_D 1ml0_D 1bo0_A 1ncv_A
Probab=28.07 E-value=58 Score=20.54 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=30.8
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L 89 (128)
.+.|.++.++|.+.=+|++.-=++++++.++..+++.
T Consensus 39 ~~aVIf~tk~g~~vCadP~~~WVq~~i~~l~~~~~~~ 75 (77)
T 1dok_A 39 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTP 75 (77)
T ss_dssp SCEEEEEETTCCEEEECTTSHHHHHHHHHHHHCC---
T ss_pred CcEEEEEEcCCCEEeCCCChHHHHHHHHHHHhhhccC
Confidence 4788899999999999999999999999999877653
No 30
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=27.79 E-value=1e+02 Score=18.52 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhc
Q 033063 51 DHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKG 86 (128)
Q Consensus 51 ~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s 86 (128)
+.-|++.+ |.||+...--....+..+|.+.|..++
T Consensus 77 ~~~Pt~~~-~~~g~~~~~~~g~~~~~~l~~~l~~~a 111 (111)
T 3uvt_A 77 RGYPTLLL-FRGGKKVSEHSGGRDLDSLHRFVLSQA 111 (111)
T ss_dssp CSSSEEEE-EETTEEEEEECSCCSHHHHHHHHHHHC
T ss_pred CcccEEEE-EeCCcEEEeccCCcCHHHHHHHHHhcC
Confidence 56788554 589988766666789999999888764
No 31
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=27.70 E-value=36 Score=22.80 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccccchHHHHHhcCCCCC
Q 033063 75 AHTIRSMILEKGQMLENEQMFRDAGLNWP 103 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L~~~e~~~~~g~~~~ 103 (128)
++.+.+.|..|+....+.++|..+|..+.
T Consensus 40 Iq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~ 68 (105)
T 1pyo_B 40 IEALAQVFSERACDMHVADMLVKVNALIK 68 (105)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988776654
No 32
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Probab=27.68 E-value=49 Score=20.98 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=30.2
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhcccc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L 89 (128)
.+.|.++.++|.+.=+||+.-=++++++.++....++
T Consensus 36 ~~aVIf~tk~gr~vCadP~~~WVq~~ik~l~~~~~~~ 72 (76)
T 1f2l_A 36 KRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAAL 72 (76)
T ss_dssp SCCEEEEETTCCEEEECTTSHHHHHHHHHHHTC----
T ss_pred CeEEEEEEcCCCEEeCCCChHHHHHHHHHHHHHhhhh
Confidence 5788899999999999999999999999999877655
No 33
>1lv9_A Small inducible cytokine B10; chemokine; HET: MLE; NMR {Synthetic} SCOP: d.9.1.1 PDB: 1o7y_A 1o7z_A 1o80_A
Probab=27.58 E-value=79 Score=19.88 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCeEEEEee-CCcEEEEecCCCCHHHHHHHHHHhc
Q 033063 53 PPEIKVTFV-TGAEEVFDATSTSAHTIRSMILEKG 86 (128)
Q Consensus 53 ~P~I~Vtf~-dG~e~~~d~~~~t~~eI~~~i~~~s 86 (128)
.+.|.++.+ +|.+.=+|++.--++++++.++...
T Consensus 38 ~~~VIf~tk~~g~~vC~dP~~~WVq~~ik~l~~~~ 72 (77)
T 1lv9_A 38 RVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKEM 72 (77)
T ss_dssp SEEEEEEETTTTEEEEECCCSSTHHHHHHHHHC--
T ss_pred CCEEEEEECcCCCeEccCCchHHHHHHHHHHHhhc
Confidence 377889999 9999999999999999999988653
No 34
>3fpu_B C-C motif chemokine 3; protein:protein complex, glycoprotein, secreted, chemotaxis, cytokine, inflammatory response, polymorphism, immune system; 1.76A {Homo sapiens} SCOP: d.9.1.1 PDB: 2x69_A 3h44_C 3kbx_A 2x6g_A 1b50_A 1b53_A 3tn1_A
Probab=27.42 E-value=28 Score=21.68 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=27.4
Q ss_pred CCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhc
Q 033063 53 PPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKG 86 (128)
Q Consensus 53 ~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s 86 (128)
.+.|.++.++|++.=+|++.-=++++++.++.+|
T Consensus 37 ~~aVIf~tk~g~~vCadP~~~WVq~~ik~l~~~~ 70 (70)
T 3fpu_B 37 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA 70 (70)
T ss_dssp SCCEEEEETTSCEEEECTTSHHHHHHHHHCC---
T ss_pred CceEEEEecCCCEEECCCChHHHHHHHHHhhccC
Confidence 3889999999999999999988888888877653
No 35
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=27.03 E-value=57 Score=23.07 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=52.2
Q ss_pred ceEEEEEecCCCCCcHHHHHHHhhcCch------------hhhhcCCCceEEEE--ecC-----CCCCCeEEEEeeCCcE
Q 033063 5 LSKVRIEFNALDPRIASCMEFLAQCNAP------------KAKESNPACQIQVK--RRT-----DDHPPEIKVTFVTGAE 65 (128)
Q Consensus 5 lkkV~V~FnPF~~~aksaR~FL~~i~~~------------k~r~sNp~c~I~~~--v~~-----d~~~P~I~Vtf~dG~e 65 (128)
+.=|.|..||-.......+.|+...... .+.+ .-++....- ... -.+.|.+-+-..||+.
T Consensus 79 v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~-~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i 157 (200)
T 2b7k_A 79 LQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACK-KYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQF 157 (200)
T ss_dssp CEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHH-HTTC--------------CTTTCCCEEEECTTSCE
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHH-HcCcEEeeccccCCCCCceeeecceEEEECCCCcE
Confidence 3446778887655667888888764321 0000 111110000 000 0234577777889999
Q ss_pred EEEecCCCCHHHHHHHHHHhccccchHHHHHhcCCCCCc
Q 033063 66 EVFDATSTSAHTIRSMILEKGQMLENEQMFRDAGLNWPV 104 (128)
Q Consensus 66 ~~~d~~~~t~~eI~~~i~~~s~~L~~~e~~~~~g~~~~~ 104 (128)
...-...++..++.+.|...-+.|.-+++=+.+++.|-.
T Consensus 158 ~~~~~g~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~ 196 (200)
T 2b7k_A 158 VDALGRNYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWYS 196 (200)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHHCCCC------------
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Confidence 888777788888888888887777777777777887754
No 36
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=25.60 E-value=98 Score=20.23 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=26.0
Q ss_pred EecCCCCCCeEEEEeeCCcEEEEecCCCCHHHHHHHHHHhccccch
Q 033063 46 KRRTDDHPPEIKVTFVTGAEEVFDATSTSAHTIRSMILEKGQMLEN 91 (128)
Q Consensus 46 ~v~~d~~~P~I~Vtf~dG~e~~~d~~~~t~~eI~~~i~~~s~~L~~ 91 (128)
+|+-+...-.|.|+|.||+...|. ...++.+|+-=++
T Consensus 11 ~i~l~~~~~~L~v~w~DG~~~~~~---------~~wLRd~c~ca~c 47 (101)
T 3luu_A 11 EIRPLMISRVMEVDWADGHTSRLT---------FEHLRVECPCAEC 47 (101)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE---------HHHHHHTCCCC--
T ss_pred EEEEeCCCCEEEEEeCCCCEEEEC---------HHHHHhhCCChhh
Confidence 344344556899999999999998 4777778764444
No 37
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=24.94 E-value=43 Score=22.30 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccccchHHHHHhcCCCC
Q 033063 75 AHTIRSMILEKGQMLENEQMFRDAGLNW 102 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L~~~e~~~~~g~~~ 102 (128)
++.+.+.+..|+....+.++|..+|..+
T Consensus 42 Iq~Lc~~l~~~~~~~dl~~ilT~Vn~~V 69 (103)
T 2dko_B 42 IQSLCAMLKQYADKLEFMHILTRVNRKV 69 (103)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 7899999999999999999996665543
No 38
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=24.84 E-value=48 Score=21.77 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccc-chHHHHHhcCCCCC
Q 033063 75 AHTIRSMILEKGQML-ENEQMFRDAGLNWP 103 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L-~~~e~~~~~g~~~~ 103 (128)
++.+.+.+..|+... .+.++|..+|..+.
T Consensus 38 Iq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~ 67 (95)
T 1qtn_B 38 IQSLCQSLRERCPRGDDILTILTEVNYEVS 67 (95)
T ss_dssp HHHHHHHHHHHGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHHH
Confidence 889999999999999 99999988666543
No 39
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=24.69 E-value=1e+02 Score=21.18 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred cHHHHHHHhhcCchhhhhcCCCceEEEEec-CCCCCCeEEEEeeCCcEEEEec
Q 033063 19 IASCMEFLAQCNAPKAKESNPACQIQVKRR-TDDHPPEIKVTFVTGAEEVFDA 70 (128)
Q Consensus 19 aksaR~FL~~i~~~k~r~sNp~c~I~~~v~-~d~~~P~I~Vtf~dG~e~~~d~ 70 (128)
-..|+.|+..- .|+.+|..--+ .+.....-+|.|.||.+..||.
T Consensus 14 P~~a~~fi~~~--------Fp~~~i~~ve~~~~~~~~~YeV~~~~G~ei~Fd~ 58 (127)
T 3db7_A 14 PQLAQQFIKQH--------FSDSKVALAKMESDFLYKSYEVIFTNGNKVEFDK 58 (127)
T ss_dssp CHHHHHHHHHH--------CTTSCEEEEEEEEETTEEEEEEEETTSCEEEECT
T ss_pred CHHHHHHHHHH--------CCCCceEEEEEecCCccceEEEEECCCcEEEEeC
Confidence 35678887662 55555543333 2233478899999999999985
No 40
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.46 E-value=1.8e+02 Score=20.33 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=28.1
Q ss_pred ecCCCCCCeEEEEee---CCcEEEEecC-CCCHHHHHHHHHHh
Q 033063 47 RRTDDHPPEIKVTFV---TGAEEVFDAT-STSAHTIRSMILEK 85 (128)
Q Consensus 47 v~~d~~~P~I~Vtf~---dG~e~~~d~~-~~t~~eI~~~i~~~ 85 (128)
+.++...+.+.|+.+ +|.+.++..+ +.++.++.+.|-..
T Consensus 7 ~~~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~ 49 (118)
T 2daf_A 7 GQESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHL 49 (118)
T ss_dssp CCCCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHH
T ss_pred hhhcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhh
Confidence 344556677777755 7877777555 89999998887654
No 41
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=22.21 E-value=55 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.5
Q ss_pred eEEEEeeCCcEEEEecCC
Q 033063 55 EIKVTFVTGAEEVFDATS 72 (128)
Q Consensus 55 ~I~Vtf~dG~e~~~d~~~ 72 (128)
.|.|.|.||..+.+.+..
T Consensus 24 ~V~VQf~DGS~L~~~p~~ 41 (88)
T 1mby_A 24 AVWVQFNDGSQLVMQAGV 41 (88)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred cEEEEEcCCCEEEEecCc
Confidence 799999999999988653
No 42
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=22.16 E-value=92 Score=19.38 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=24.6
Q ss_pred eEEEEeeCCcEEEEe--cCCCCHHHHHHHHHHhcc
Q 033063 55 EIKVTFVTGAEEVFD--ATSTSAHTIRSMILEKGQ 87 (128)
Q Consensus 55 ~I~Vtf~dG~e~~~d--~~~~t~~eI~~~i~~~s~ 87 (128)
.|.|...+|+.. +. ..+.++.++.+.|..+..
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~g 35 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITG 35 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhC
Confidence 377888999765 43 457899999999988753
No 43
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=21.87 E-value=1.2e+02 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCCCeEEEEeeCCcEEEE-ecCCCCHHHHHHHHHHhc
Q 033063 51 DHPPEIKVTFVTGAEEVF-DATSTSAHTIRSMILEKG 86 (128)
Q Consensus 51 ~~~P~I~Vtf~dG~e~~~-d~~~~t~~eI~~~i~~~s 86 (128)
...-.|.|.|-||..++- -..+-++.+|.+.|+.+.
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~ 86 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR 86 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhC
Confidence 345679999999985443 335789999999999873
No 44
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.75 E-value=61 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCeEEEEeeCCcEEEEecCCC
Q 033063 52 HPPEIKVTFVTGAEEVFDATST 73 (128)
Q Consensus 52 ~~P~I~Vtf~dG~e~~~d~~~~ 73 (128)
..+.-.|+|.||....+....+
T Consensus 47 ~~~~YtV~F~DG~~etvk~~~I 68 (85)
T 3qii_A 47 KDGTYTVKFYDGVVQTVKHIHV 68 (85)
T ss_dssp TTSEEEEEETTSCEEEEEGGGE
T ss_pred CCCeEEEEEeCCCeEEecHHHc
Confidence 3478999999999999986543
No 45
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=21.54 E-value=1.5e+02 Score=18.88 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred EEEEecCCCCCcHHHHHHHhhcCchhhhhcCC-CceEE-EEecCC---------CCCCeEEEEeeCCcEEEEecCCCCHH
Q 033063 8 VRIEFNALDPRIASCMEFLAQCNAPKAKESNP-ACQIQ-VKRRTD---------DHPPEIKVTFVTGAEEVFDATSTSAH 76 (128)
Q Consensus 8 V~V~FnPF~~~aksaR~FL~~i~~~k~r~sNp-~c~I~-~~v~~d---------~~~P~I~Vtf~dG~e~~~d~~~~t~~ 76 (128)
|.|.|- .+....||.+...+.. +.+..+ +..+. ..+-.+ ..-|++.+- .||+...--...++..
T Consensus 45 vlv~F~--a~wC~~C~~~~p~l~~--~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~ 119 (128)
T 3ul3_B 45 IVLYFF--AKWCQACTMQSTEMDK--LQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILL-KNKTMLARKDHFVSSN 119 (128)
T ss_dssp EEEEEE--CTTCHHHHHHHHHHHH--HHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEE-ETTEEEEEESSCCCHH
T ss_pred EEEEEE--CCCCHHHHHHhHHHHH--HHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEE-ECCEEEEEecCCCCHH
Confidence 455553 5566777777776632 222222 22222 222111 567888665 8999887766788999
Q ss_pred HHHHHHHHh
Q 033063 77 TIRSMILEK 85 (128)
Q Consensus 77 eI~~~i~~~ 85 (128)
+|.+.|+.|
T Consensus 120 ~l~~~l~~~ 128 (128)
T 3ul3_B 120 DLIALIKKH 128 (128)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 998877643
No 46
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=21.05 E-value=1.5e+02 Score=19.68 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=24.2
Q ss_pred CeEEEEeeCCcEEEE-ecCCCCHHHHHHHHHHh
Q 033063 54 PEIKVTFVTGAEEVF-DATSTSAHTIRSMILEK 85 (128)
Q Consensus 54 P~I~Vtf~dG~e~~~-d~~~~t~~eI~~~i~~~ 85 (128)
-.|.|.|-||..++- -..+-++.+|.+.|+.+
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~ 46 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQT 46 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc
Confidence 467788889984333 33578999999999987
No 47
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=21.05 E-value=66 Score=19.17 Aligned_cols=22 Identities=5% Similarity=0.169 Sum_probs=18.3
Q ss_pred eeCCcEEEEecCCCCHHHHHHHHH
Q 033063 60 FVTGAEEVFDATSTSAHTIRSMIL 83 (128)
Q Consensus 60 f~dG~e~~~d~~~~t~~eI~~~i~ 83 (128)
..||++..+ +..|+.++++++.
T Consensus 3 ~vNg~~~~~--~~~tv~~ll~~l~ 24 (64)
T 2cu3_A 3 WLNGEPRPL--EGKTLKEVLEEMG 24 (64)
T ss_dssp EETTEEECC--TTCCHHHHHHHHT
T ss_pred EECCEEEEc--CCCcHHHHHHHcC
Confidence 478999988 5689999988875
No 48
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=20.75 E-value=1.6e+02 Score=18.29 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.3
Q ss_pred eEEEEeeCCcE--EEEecCCCCHHHHHHHHHHh
Q 033063 55 EIKVTFVTGAE--EVFDATSTSAHTIRSMILEK 85 (128)
Q Consensus 55 ~I~Vtf~dG~e--~~~d~~~~t~~eI~~~i~~~ 85 (128)
.|.|.+-||.. ..|. .+-++++|.+.|+.+
T Consensus 9 ~i~iRlpdG~r~~~~F~-~~~tl~~v~~fv~~~ 40 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFL-ASNKLQIVFDFVASK 40 (84)
T ss_dssp EEEEECTTSCEEEEEEE-TTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHHc
Confidence 57788889974 4455 567899999999874
No 49
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=20.73 E-value=58 Score=22.41 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhccccchHHHHHhcCCCCC
Q 033063 75 AHTIRSMILEKGQMLENEQMFRDAGLNWP 103 (128)
Q Consensus 75 ~~eI~~~i~~~s~~L~~~e~~~~~g~~~~ 103 (128)
++.+.+.|..++....+.++|..+|..+.
T Consensus 41 IQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va 69 (117)
T 3rjm_B 41 IEALAQVFSERACDMHVADMLVKVNALIK 69 (117)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999999887754
No 50
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=20.20 E-value=1.3e+02 Score=23.23 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=29.4
Q ss_pred CCCCeEEEEeeCCcEEEEec-CCCCHHHHHHHHHHhcccc
Q 033063 51 DHPPEIKVTFVTGAEEVFDA-TSTSAHTIRSMILEKGQML 89 (128)
Q Consensus 51 ~~~P~I~Vtf~dG~e~~~d~-~~~t~~eI~~~i~~~s~~L 89 (128)
..+=.+.|.|-||....+.. ++.+.+|+.+.|..+-.-.
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~ 54 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL 54 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 35567899999999988865 4788999988887765443
No 51
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=20.00 E-value=1.5e+02 Score=20.27 Aligned_cols=32 Identities=6% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCeEEEEeeCCcE--EEEecCCCCHHHHHHHHHHh
Q 033063 53 PPEIKVTFVTGAE--EVFDATSTSAHTIRSMILEK 85 (128)
Q Consensus 53 ~P~I~Vtf~dG~e--~~~d~~~~t~~eI~~~i~~~ 85 (128)
.-.|.|.|-||.. ..|. ..-++.+|.+.|+.+
T Consensus 43 ~t~IqIRlPdG~rl~~rF~-~~~tl~~V~~fV~~~ 76 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLP-EQAKLLALVKHVQSK 76 (124)
T ss_dssp EEEEEEECTTSCEEEEEEE-TTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhc
Confidence 4467778889974 4444 578899999999876
Done!