BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033067
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic
OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2
Length = 130
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 119/130 (91%), Gaps = 2/130 (1%)
Query: 1 MATSLMT-MPQFSGLRP-QISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTT 58
MA+++MT +PQF+GLR +ISAAP Q L + QPMRRK +GALGA+C FIGS TNLIMVT+
Sbjct: 1 MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTS 60
Query: 59 TTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 118
TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLACG+VGHIIGVGV
Sbjct: 61 TTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120
Query: 119 VLGLKNLGAL 128
VLGLKN+GA+
Sbjct: 121 VLGLKNIGAI 130
>sp|Q9ZT05|PSAK_MEDSA Photosystem I reaction center subunit psaK, chloroplastic
OS=Medicago sativa GN=PSAK PE=2 SV=1
Length = 129
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/127 (81%), Positives = 113/127 (88%), Gaps = 2/127 (1%)
Query: 1 MATSLMT-MPQFSGLRPQISAAPAQSLVAAQPM-RRKCSGALGARCGFIGSPTNLIMVTT 58
MATS+MT +PQF+GLRPQ+ +P Q LVAAQPM RRK GALG RC FIGS TN+IMV +
Sbjct: 1 MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVAS 60
Query: 59 TTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 118
TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLACG+VGHIIGVGV
Sbjct: 61 TTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120
Query: 119 VLGLKNL 125
VLGL+ L
Sbjct: 121 VLGLRTL 127
>sp|P36886|PSAK_HORVU Photosystem I reaction center subunit psaK, chloroplastic
OS=Hordeum vulgare GN=PSAK PE=1 SV=1
Length = 131
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 103/126 (81%), Gaps = 5/126 (3%)
Query: 3 TSLMTMPQFSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLM 62
+++ ++PQF GLR + + +S+ +RR+ S G RC +IGS TNLIMVTTTTLM
Sbjct: 6 SAMTSVPQFHGLR---TYSSPRSMATLPSLRRRRSQ--GIRCDYIGSSTNLIMVTTTTLM 60
Query: 63 LFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGL 122
LFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLACG+VGHI+GVG+VLGL
Sbjct: 61 LFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGL 120
Query: 123 KNLGAL 128
KN G L
Sbjct: 121 KNTGVL 126
>sp|P14225|PSAK_CHLRE Photosystem I reaction center subunit psaK, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1
Length = 113
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 45 GFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL-EVRDS-GLQTGDPAGFTLA 102
GFIGS TNLIMV +TT L A RFGLAP+ + TAGLKL + ++S G+ + DPAGFT+
Sbjct: 28 GFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIV 87
Query: 103 DTLACGSVGHIIGVGVVLGLKNLGAL 128
D LA G+ GH +GVG+VLGLK +GAL
Sbjct: 88 DVLAMGAAGHGLGVGIVLGLKGIGAL 113
>sp|P42051|PSAK_CUCSA Photosystem I reaction center subunit psaK, chloroplastic
(Fragment) OS=Cucumis sativus GN=PSAK PE=1 SV=1
Length = 33
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 44 CGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANR 76
+IGSPTN+IMV +T+LMLFAGRFGLAPSANR
Sbjct: 1 WDYIGSPTNVIMVISTSLMLFAGRFGLAPSANR 33
>sp|P14627|PSAK_SPIOL Photosystem I reaction center subunit psaK, chloroplastic
(Fragment) OS=Spinacia oleracea GN=PSAK PE=1 SV=2
Length = 29
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 46 FIGSPTNLIMVTTTTLMLFAGRFGLAP 72
FIGS TNLIMVT+TTLMLFAGRFGL P
Sbjct: 3 FIGSSTNLIMVTSTTLMLFAGRFGLXP 29
>sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V, chloroplastic
OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1
Length = 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 29/129 (22%)
Query: 11 FSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRF-- 68
F GLRP + +L RK S A+ R SP+ +++ +T L LF GRF
Sbjct: 28 FHGLRPLRLGGSSSALPKLSTTGRKSSSAV-VRAEL--SPS-IVISLSTGLSLFLGRFVF 83
Query: 69 -----------GLAPSANRKATAGLKLEVRD-------SGLQTGDPAGFTLADTLACGSV 110
GL P N K E D S L++ DP GF + D LA GS+
Sbjct: 84 FNFQRENVAKQGL-PEQNGKT----HFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSI 138
Query: 111 GHIIGVGVV 119
GHI+ ++
Sbjct: 139 GHIVAYYIL 147
>sp|Q9SPM4|PSAG_TORRU Photosystem I reaction center subunit V, chloroplastic OS=Tortula
ruralis GN=PSAG PE=3 SV=1
Length = 112
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 89 SGLQTGDPAGFTLADTLACGSVGHIIGVGVV 119
S L+T DPAGFTL D LA G++GH +G ++
Sbjct: 71 SMLKTNDPAGFTLVDVLAWGALGHAVGFFIL 101
>sp|P12357|PSAG_SPIOL Photosystem I reaction center subunit V, chloroplastic OS=Spinacia
oleracea GN=PSAG PE=1 SV=1
Length = 167
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 49 SPTNLIMVTTTTLMLFAGRFGL-----------APSAN---RKATAGLKLEVRDSGLQTG 94
SP+ L++ +T L LF GRF P N + + S L++
Sbjct: 72 SPS-LVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSN 130
Query: 95 DPAGFTLADTLACGSVGHIIGVGVV 119
DP GF + D LA GS+GHI+ ++
Sbjct: 131 DPVGFNIVDVLAWGSIGHIVAYYIL 155
>sp|Q00327|PSAG_HORVU Photosystem I reaction center subunit V, chloroplastic OS=Hordeum
vulgare GN=PSAG PE=1 SV=1
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 91 LQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKN 124
L++ DP GF L D LA GS+GHI+ ++ N
Sbjct: 102 LKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 135
>sp|P31567|PSAK_GALSU Photosystem I reaction center subunit PsaK OS=Galdieria sulphuraria
GN=psaK PE=3 SV=1
Length = 69
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 46 FIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTL 105
I TN+I + T+ + G++ + N ++ A LA+ L
Sbjct: 2 LIAVSTNIIFIVVNTICVILGKYSVQNKKN----------------ESYSIANINLAELL 45
Query: 106 ACGSVGHIIGVGVVLGLKNLG 126
A S+GHII VLGLK+L
Sbjct: 46 ASMSLGHIISSATVLGLKSLN 66
>sp|P72712|PSAK1_SYNY3 Photosystem I reaction center subunit PsaK 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaK1 PE=3 SV=1
Length = 86
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 69 GLAPSANRKATAGLKLEVRDSGLQTGDPA-----GFTLADTLACGSVGHIIGVGVVLGLK 123
G+ + N A A KL ++ + T P+ GF L L S GHI+G GV+LGL
Sbjct: 22 GVMIACNILAIAFGKLTIKQQNVGTPMPSSNFFGGFGLGAVLGTASFGHILGAGVILGLA 81
Query: 124 NLGAL 128
N+G L
Sbjct: 82 NMGVL 86
>sp|Q1XDB7|PSAK_PORYE Photosystem I reaction center subunit PsaK OS=Porphyra yezoensis
GN=psaK PE=3 SV=1
Length = 86
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 53 LIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGH 112
++M+T L + AGR+ + GL + SG++ GF L + LA S+GH
Sbjct: 22 MVMITCNLLAIVAGRYAIK-------VRGLGPSIPVSGVE-----GFGLPELLATTSLGH 69
Query: 113 IIGVGVVLGLKNLG 126
+IG +LGL N+G
Sbjct: 70 VIGAASILGLSNVG 83
>sp|P51370|PSAK_PORPU Photosystem I reaction center subunit PsaK OS=Porphyra purpurea
GN=psaK PE=3 SV=1
Length = 86
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 53 LIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGH 112
++M+T L + AGR+ + GL + SG++ GF L + LA S+GH
Sbjct: 22 MVMITCNLLAIVAGRYAIK-------VRGLGPSIPVSGVE-----GFGLPELLATTSLGH 69
Query: 113 IIGVGVVLGLKNLG 126
+IG +LGL N+G
Sbjct: 70 VIGAASILGLSNVG 83
>sp|B2IWT4|PSAK_NOSP7 Photosystem I reaction center subunit PsaK OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=psaK PE=3 SV=1
Length = 86
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 98 GFTLADTLACGSVGHIIGVGVVLGLKNLG 126
GF L LA + GHI+GVG VLGL NLG
Sbjct: 56 GFGLPALLATTAFGHILGVGAVLGLHNLG 84
>sp|Q9S3W9|PSAK_MASLA Photosystem I reaction center subunit PsaK OS=Mastigocladus
laminosus GN=psaK PE=3 SV=1
Length = 86
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 98 GFTLADTLACGSVGHIIGVGVVLGLKNLG 126
GF L LA + GHI+G GV+LGL NLG
Sbjct: 56 GFGLPALLATTAFGHILGTGVILGLHNLG 84
>sp|P23317|PSAK_ANAVT Photosystem I reaction center subunit PsaK OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaK PE=1 SV=2
Length = 86
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 98 GFTLADTLACGSVGHIIGVGVVLGLKNLG 126
GF LA + GHI+GVG++LGL NLG
Sbjct: 56 GFGAPALLATTAFGHILGVGIILGLHNLG 84
>sp|Q8YLK8|PSAK2_NOSS1 Photosystem I reaction center subunit PsaK 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=psaK2 PE=3 SV=2
Length = 92
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 41 GARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFT 100
G + G+P +I+ + ++L AGR + R G K+ + + +
Sbjct: 17 GTTWNWNGTP--IIIASCLLVLLIAGR------SIRYPHVGTKMPLPFPSIFNNP----S 64
Query: 101 LADTLACGSVGHIIGVGVVLGLKNLGAL 128
+A LA S GHIIGV VLGL NLG +
Sbjct: 65 VATFLAAMSFGHIIGVAAVLGLTNLGVI 92
>sp|P58583|PSAK1_NOSS1 Photosystem I reaction center subunit PsaK 1 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=psaK1 PE=3 SV=1
Length = 86
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 98 GFTLADTLACGSVGHIIGVGVVLGLKNLG 126
GF LA + GHI+GVG+VLGL NLG
Sbjct: 56 GFGAPALLATTAFGHILGVGLVLGLHNLG 84
>sp|P14224|PSAG_CHLRE Photosystem I reaction center subunit V, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1
Length = 126
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 78 ATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVV 119
AT L+ + T DPAGF + D G++GH +G V+
Sbjct: 74 ATYFDDLQKNSTIFATNDPAGFNIIDVAGWGALGHAVGFAVL 115
>sp|P17226|PSAK_PEA Photosystem I reaction center subunit psaK, chloroplastic
(Fragment) OS=Pisum sativum GN=PSAK PE=1 SV=1
Length = 20
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 45 GFIGSPTNLIMVTTTTLMLF 64
FIGS TN+IMV +TTLMLF
Sbjct: 1 DFIGSSTNVIMVASTTLMLF 20
>sp|O78444|PSAK_GUITH Photosystem I reaction center subunit PsaK OS=Guillardia theta
GN=psaK PE=3 SV=1
Length = 87
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 51 TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSV 110
T+ IM+ L + + R+ + N+ L L +G + F L + LA S+
Sbjct: 20 TSSIMILCNVLCIVSARYIIQ---NKNKGTALPL--------SGSFSTFGLPELLATTSL 68
Query: 111 GHIIGVGVVLGLKNLGAL 128
GHIIG G +LG +G L
Sbjct: 69 GHIIGSGTILGFSYIGLL 86
>sp|Q6B8M4|PSAK_GRATL Photosystem I reaction center subunit PsaK OS=Gracilaria
tenuistipitata var. liui GN=psaK PE=3 SV=1
Length = 86
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 51 TNLIMVTTTTLMLFAGRF-----GLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTL 105
T +IMV L + GR+ GL PS GLK GF L + L
Sbjct: 20 TAIIMVICNLLCIGLGRYAIQVRGLGPSI---PALGLK--------------GFGLPELL 62
Query: 106 ACGSVGHIIGVGVVLGLKNL 125
A S+GHIIG G ++GL ++
Sbjct: 63 ATTSLGHIIGAGAIIGLNSI 82
>sp|P0A425|PSAK_THEEB Photosystem I reaction center subunit PsaK OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaK PE=1 SV=1
Length = 83
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 87 RDSGLQTGDPA---GFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128
+ GL PA GF L + LA S GH++ GVV GL+ GAL
Sbjct: 39 KGPGLPIALPALFEGFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83
>sp|P0A426|PSAK_SYNEL Photosystem I reaction center subunit PsaK OS=Synechococcus
elongatus GN=psaK PE=1 SV=1
Length = 83
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 87 RDSGLQTGDPA---GFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128
+ GL PA GF L + LA S GH++ GVV GL+ GAL
Sbjct: 39 KGPGLPIALPALFEGFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83
>sp|O19902|PSAK_CYACA Photosystem I reaction center subunit PsaK OS=Cyanidium caldarium
GN=psaK PE=3 SV=1
Length = 84
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 99 FTLADTLACGSVGHIIGVGVVLGLKNLG 126
F + + LA S+GHIIGVG +GLK L
Sbjct: 53 FGVPELLATMSLGHIIGVGSTIGLKTLN 80
>sp|Q06346|KEI1_YEAST Inositol phosphorylceramide synthase regulatory subunit KEI1
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=KEI1 PE=1 SV=2
Length = 221
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 1 MATSLMTMPQ-FSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLI----- 54
M +SL+T+P+ F G P A +V + KCSGA G F G P + +
Sbjct: 1 MRSSLLTLPKSFLGFMPLYLAV---EIVLGISILNKCSGAYGILALFTGHPLDFMQWIAY 57
Query: 55 MVTTTTLMLFAGRFGLAPSAN 75
+ + TL++F+ L N
Sbjct: 58 LWSVFTLIVFSQGLYLIHKPN 78
>sp|P74564|PSAK2_SYNY3 Photosystem I reaction center subunit PsaK 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaK2 PE=3 SV=2
Length = 90
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 92 QTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128
Q F L + LA S GHI+G G+VLGL + G L
Sbjct: 54 QLASKKTFGLPELLATMSFGHILGAGMVLGLASSGIL 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,017,982
Number of Sequences: 539616
Number of extensions: 1661985
Number of successful extensions: 3984
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3952
Number of HSP's gapped (non-prelim): 34
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)