Query 033067
Match_columns 128
No_of_seqs 112 out of 138
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03070 photosystem I reactio 100.0 3.9E-50 8.5E-55 301.9 10.1 127 1-128 1-128 (128)
2 TIGR03050 PS_I_psaK_plant phot 100.0 8.3E-37 1.8E-41 216.0 6.9 83 46-128 1-83 (83)
3 PLN00091 photosystem I reactio 99.9 2.5E-27 5.4E-32 182.8 4.7 109 6-119 23-147 (160)
4 PRK13216 photosystem I reactio 99.9 3.2E-27 7E-32 169.5 4.9 71 49-128 21-91 (91)
5 PLN00081 photosystem I reactio 99.9 2.7E-27 5.8E-32 179.5 4.3 114 1-119 1-129 (141)
6 TIGR03049 PS_I_psaK photosyste 99.9 8.2E-27 1.8E-31 164.5 5.2 69 49-128 13-81 (81)
7 CHL00164 psaK photosystem I su 99.9 1.4E-26 3.1E-31 164.7 6.4 68 49-128 18-85 (86)
8 PRK13214 photosystem I reactio 99.9 1.2E-26 2.5E-31 165.2 4.5 69 49-128 18-86 (86)
9 PF01241 PSI_PSAK: Photosystem 99.9 1.8E-27 3.9E-32 167.4 -3.3 79 50-128 3-81 (81)
10 TIGR03051 PS_I_psaG_plant phot 99.8 2.7E-20 5.9E-25 132.8 -0.3 66 54-119 1-80 (88)
11 PF01241 PSI_PSAK: Photosystem 85.6 0.18 3.9E-06 35.8 -0.7 26 49-74 5-30 (81)
12 PRK10332 hypothetical protein; 77.2 3.5 7.7E-05 30.6 3.5 24 95-118 7-30 (107)
13 PF13544 N_methyl_2: Type IV p 70.5 4.5 9.7E-05 23.5 2.1 19 96-114 13-31 (31)
14 PRK10132 hypothetical protein; 48.1 16 0.00034 26.9 2.2 16 107-122 87-102 (108)
15 PF05957 DUF883: Bacterial pro 45.5 19 0.00041 24.8 2.2 16 107-122 74-89 (94)
16 PRK10404 hypothetical protein; 44.1 20 0.00043 26.0 2.2 16 107-122 81-96 (101)
17 PF07963 N_methyl: Prokaryotic 27.6 54 0.0012 17.7 1.7 13 98-110 2-14 (20)
18 TIGR02532 IV_pilin_GFxxxE prep 22.8 1.3E+02 0.0028 16.6 2.8 21 97-117 2-22 (26)
19 COG4575 ElaB Uncharacterized c 22.0 71 0.0015 23.8 2.0 16 107-122 84-99 (104)
No 1
>PLN03070 photosystem I reaction center subunit psaK 247; Provisional
Probab=100.00 E-value=3.9e-50 Score=301.94 Aligned_cols=127 Identities=83% Similarity=1.262 Sum_probs=119.1
Q ss_pred Ccccc-cCCCccccccCCCCccchhhhhhccccccccCCceeeeeeecCCCceeeehhhHHHHHHHhhhccccccCcCCC
Q 033067 1 MATSL-MTMPQFSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKAT 79 (128)
Q Consensus 1 ma~~~-~~~~~f~glr~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~~~ 79 (128)
||+++ .+.|||+||||+++ ++.+++.+++++|+++||+++||||||||++++|||+||+++|++|||+|.|+||+|++
T Consensus 1 ~~~~~~~~~p~F~glr~~~~-~~~~~~~~~~~~~~~~k~~~~v~~d~igs~~nlIMi~~n~laL~iGRF~i~P~~nk~~~ 79 (128)
T PLN03070 1 MASTMMTTLPQFNGLRASSA-APVKSLVAVQPMRRKGKGALGARCDYIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKAT 79 (128)
T ss_pred Cccccccccccccccccccc-cccccccccccccccCCcceeeEeeecCCCCcEeehHHHHHHHHHHHheechhhccCCC
Confidence 78888 79999999999743 55666777788888899999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 80 AGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 80 ~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
+|+++|++++.+++|||+||+++|+|||+|||||||+|+||||+|+|+|
T Consensus 80 ~G~~lp~~~s~l~s~dpaGf~~~~~La~~s~GHiiG~G~ILGL~~~G~l 128 (128)
T PLN03070 80 AGLKLEARDSGLQTGDPAGFTLADTLACGAVGHIIGVGVVLGLKNIGAL 128 (128)
T ss_pred CCccCcccccccccCCCCCcCHHHHHHhhhHHHHHHHHHHhcchhhccC
Confidence 9999999999999999999999999999999999999999999999987
No 2
>TIGR03050 PS_I_psaK_plant photosystem I reaction center PsaK, plant form. This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity.
Probab=100.00 E-value=8.3e-37 Score=215.97 Aligned_cols=83 Identities=90% Similarity=1.371 Sum_probs=81.0
Q ss_pred ecCCCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhccc
Q 033067 46 FIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNL 125 (128)
Q Consensus 46 ~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~ 125 (128)
||||++++|||+||++|+++|||+|.|+||+|+++|+++|++.+.+++|||+||+++|+|||+|||||||+|+||||+|+
T Consensus 1 ~~~~~~~~IMi~~n~lal~~Grf~i~p~~~k~~~~G~~lp~~~~~~~s~dfagf~~~~~La~~s~GHiiG~g~ilGL~~~ 80 (83)
T TIGR03050 1 FIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNI 80 (83)
T ss_pred CCCCccchHHHHHHHHHHHHHHHhcchhhhcCCCCCcCCcccccccCcCCCCCcCHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 58999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCC
Q 033067 126 GAL 128 (128)
Q Consensus 126 G~L 128 (128)
|+|
T Consensus 81 G~l 83 (83)
T TIGR03050 81 GAL 83 (83)
T ss_pred ccC
Confidence 986
No 3
>PLN00091 photosystem I reaction center subunit V (PsaG); Provisional
Probab=99.94 E-value=2.5e-27 Score=182.81 Aligned_cols=109 Identities=29% Similarity=0.402 Sum_probs=80.7
Q ss_pred cCCCccccccCCCCccchhhhhhccccccccCCce--eeeeeecCCCceeeehhhHHHHHHHhhhccccccCcC------
Q 033067 6 MTMPQFSGLRPQISAAPAQSLVAAQPMRRKCSGAL--GARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRK------ 77 (128)
Q Consensus 6 ~~~~~f~glr~~~~~~~~~~~~~~~~~~~~~~~~~--~~ra~~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~------ 77 (128)
.+..+|+||||.............. .+..++++ .+|||+ ++++||++||.++|++|||++.|+|+++
T Consensus 23 ~~~~sF~GLRpl~~~~~~s~~~~~~--~t~~~~s~~~~~~a~l---~~~~vIs~sTa~~L~LGRFVFl~fQR~~v~kq~P 97 (160)
T PLN00091 23 PSSISFQGLRPLSKAKTTSLLPKIS--TTAPRKSSAAVVRAEL---NPSLVISLSTGLSLFLGRFVFFNFQRENVAKQVP 97 (160)
T ss_pred CCccccccccccccccccccccccc--ccccccchhheeeecc---CccEEEEcchHHHHHhhceeeeccchhhHhhhCC
Confidence 4678999999975432211111111 11122333 499996 9999999999999999999998665443
Q ss_pred -----C--CCCccc-ccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHH
Q 033067 78 -----A--TAGLKL-EVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVV 119 (128)
Q Consensus 78 -----~--~~G~~l-p~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiI 119 (128)
+ ++|+.. +|..+.+++|||+|||++|||||||+|||||+.++
T Consensus 98 ~qnG~Thfeagd~ra~E~~sllksnDPaGFtiVDVlAWGSlGH~Vg~~iL 147 (160)
T PLN00091 98 EQNGLTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYIL 147 (160)
T ss_pred CcCCceeeecccHHHHHHHhhhccCCCCcceeehhhhcchhHHHHhhhhe
Confidence 2 466655 45678899999999999999999999999999864
No 4
>PRK13216 photosystem I reaction center subunit X-like protein; Reviewed
Probab=99.94 E-value=3.2e-27 Score=169.53 Aligned_cols=71 Identities=32% Similarity=0.407 Sum_probs=65.6
Q ss_pred CCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
-++++|||+||++|+++|||+| +|+++|+++|.+.+. .|+||+++++||++|||||||+|+||||+|+|+|
T Consensus 21 p~va~IMI~cNllai~ig~~~I-----~~p~~Gp~lP~p~~~----~F~g~g~~~lLat~sfGHIlG~G~ILGL~~~G~L 91 (91)
T PRK13216 21 WTGTPIIIGSCLLVLLIAGRSI-----RYPHVGPKMPLPFPS----LFNNPSVATFLAAMSFGHIIGVAAVLGLTNLGVI 91 (91)
T ss_pred cchhHHHHHHHHHHHHHHHHHh-----cCCCCCCCCCccchh----hccCCCHHHHHHHhHHHHHHHHHHHHhhhhcccC
Confidence 5789999999999999999999 899999999864444 4899999999999999999999999999999987
No 5
>PLN00081 photosystem I reaction center subunit V (PsaG); Provisional
Probab=99.93 E-value=2.7e-27 Score=179.54 Aligned_cols=114 Identities=30% Similarity=0.419 Sum_probs=87.3
Q ss_pred CcccccCCCccccccCCCCccchhhhhhcccccc-ccCCceeeeeeecCCCceeeehhhHHHHHHHhhhccccccCcCC-
Q 033067 1 MATSLMTMPQFSGLRPQISAAPAQSLVAAQPMRR-KCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKA- 78 (128)
Q Consensus 1 ma~~~~~~~~f~glr~~~~~~~~~~~~~~~~~~~-~~~~~~~~ra~~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~~- 78 (128)
|+.+.+|+|+.+|||...+++.-.+.++ +++. +.|+++.+||++ ++++||++||.++|++|||++.|+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ar~a--~r~aP~~r~~v~~rA~l---~~~lvIS~St~~~L~LGRFVFlpfQR~~va 75 (141)
T PLN00081 1 MAAASLSPPSVAGLRLAPSPRVRAARVA--FRAAPARRRSVAARAEL---SASLVISLSTGVSLFLGRFVFFNFQRENVA 75 (141)
T ss_pred CCccccCCccccceecCCCcchhhhhcc--cccCcchhhhheeeeec---CceEEEEcchHHHHHhhhheeehhhHHHHh
Confidence 6778899999999997544332111111 1111 235689999996 99999999999999999999977655432
Q ss_pred ------------CCCccc-ccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHH
Q 033067 79 ------------TAGLKL-EVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVV 119 (128)
Q Consensus 79 ------------~~G~~l-p~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiI 119 (128)
++|++. ++..+.+++|||+|||++|+|||||+|||+|++++
T Consensus 76 ~q~P~QNG~ThF~agd~ra~e~~~~l~tnDPaGF~ivDvlawGsiGH~vg~~iL 129 (141)
T PLN00081 76 KQVPAQNGKTHFDAGDERAKEFAALLKSNDPVGFNLVDVLAWGSLGHIVAYYIL 129 (141)
T ss_pred hhCCccCCcchhhhHHHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhhheee
Confidence 355544 34568899999999999999999999999999874
No 6
>TIGR03049 PS_I_psaK photosystem I reaction center subunit PsaK. Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen.
Probab=99.93 E-value=8.2e-27 Score=164.47 Aligned_cols=69 Identities=41% Similarity=0.651 Sum_probs=64.0
Q ss_pred CCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
-++++|||+||++|+++|||+| +++++|+++|. + +.|+||+++|+|||+|||||||+|+||||+|+|+|
T Consensus 13 p~vaiIMI~cNilai~igk~~I-----~~p~~Gp~lP~--~----~~f~g~~~~~lLat~s~GHilG~G~ILGL~~~G~L 81 (81)
T TIGR03049 13 PKVAIIMILCNVLAIAIGRYTI-----QYPNVGPKLPN--S----AFFGGFGLPELLATTSFGHILGVGAILGLANLGVL 81 (81)
T ss_pred ccchhhhhHHHHHHHHHHHHHH-----cCCCCCCCCCC--h----hhhCCCCHHHHHHHhhhHHHHHHHHHhhhhhhccC
Confidence 5789999999999999999999 88999999985 3 34899999999999999999999999999999986
No 7
>CHL00164 psaK photosystem I subunit X; Validated
Probab=99.93 E-value=1.4e-26 Score=164.75 Aligned_cols=68 Identities=37% Similarity=0.695 Sum_probs=63.4
Q ss_pred CCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
.++++|||+||++|+++|||+| +++++|+++|. ++ |+||+++|+|||+|||||||+|+||||+|+|+|
T Consensus 18 p~vaiIMI~cNilai~igk~~I-----~~~~~Gp~lP~------~~-f~gf~l~~lLat~s~GHIiG~G~ILGL~n~G~L 85 (86)
T CHL00164 18 ASTAIIMILCNLLCIVAGRYAI-----QVRGLGPSIPI------SG-LKGFGLPELLATTSLGHIIGAGSILGLSYVGLI 85 (86)
T ss_pred CcceehhhHHHHHHHHHHHHHH-----cCCCCCCCCCC------cc-cCCCCHHHHHHHhhhHHHHHHHHHHhhhhcccc
Confidence 5889999999999999999999 79999999974 33 789999999999999999999999999999986
No 8
>PRK13214 photosystem I reaction center subunit X; Reviewed
Probab=99.93 E-value=1.2e-26 Score=165.23 Aligned_cols=69 Identities=30% Similarity=0.519 Sum_probs=64.1
Q ss_pred CCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
-++++|||+||++|+++|||+| +++++|+++|. + +.|+||+++|+|||+|||||||+|+||||+|+|+|
T Consensus 18 p~vaiIMI~cNilai~igk~~I-----~~p~~Gp~lP~--~----~~f~g~g~~~lLat~sfGHilG~G~ILGL~~~G~L 86 (86)
T PRK13214 18 PKVALVMIICNIIAIAFGKATI-----KYPNVGPALPS--A----NFFGGMGLGALLGTTSFGHILGAGAILGLANLGVL 86 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHh-----cCCCCCCCCCC--h----hhhCCCCHHHHHHHhhHHHHHHHHHHHhhhhhccC
Confidence 5789999999999999999999 89999999984 3 34899999999999999999999999999999987
No 9
>PF01241 PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR000549 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. Photosystem I (PSI) [] is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. It is found in the chloroplasts of plants and cyanobacteria. PSI is composed of at least 14 different subunits, two of which, PSI-G (gene psaG) and PSI-K (gene psaK), are small hydrophobic proteins of about 7 to 9 Kd and evolutionary related []. Both seem to contain two transmembrane regions. Cyanobacteria contain only PSI-K.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0016020 membrane; PDB: 2O01_G 2WSF_G 2WSE_G 2WSC_G 3PCQ_K 1JB0_K.
Probab=99.92 E-value=1.8e-27 Score=167.42 Aligned_cols=79 Identities=47% Similarity=0.765 Sum_probs=63.6
Q ss_pred CceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 50 PTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 50 ~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
.++.||+++++..++++||+..|.|+++.+++.|++.+++.++||||+|||++|||||||||||||+|+||||+|.|+|
T Consensus 3 ws~~v~~imi~~nl~a~~fg~~~i~~~~~g~~lP~~~~~~~l~s~~p~Gf~~~dvLA~~SlGHiiG~g~IlGl~~~G~l 81 (81)
T PF01241_consen 3 WSPKVAIIMIACNLFAIRFGKAPIQRPNVGPGLPLQNPESGLASNDPAGFGLPDVLATGSLGHIIGAGIILGLSNIGVL 81 (81)
T ss_dssp TTTTCHHHHHHHHHHTTCCCCTTSSSSSSTSSSSSTTT-TTTTTSSCHHCCTTHHHCTTSSSCCCSSSCTTSSSTT---
T ss_pred cchhHHHHHHHHHHHHHHHhheeeccCCCCCCCCCCCcccccccCCCCCCCHHHHHHHhhHHHHHHHHHHHHhhhcCCC
Confidence 3455666666666666666666678888888888877779999999999999999999999999999999999999986
No 10
>TIGR03051 PS_I_psaG_plant photosystem I reaction center subunit V, chloroplast.
Probab=99.77 E-value=2.7e-20 Score=132.84 Aligned_cols=66 Identities=38% Similarity=0.531 Sum_probs=55.2
Q ss_pred eehhhHHHHHHHhhhcccc-----------ccCcCCCCC--cc-cccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHH
Q 033067 54 IMVTTTTLMLFAGRFGLAP-----------SANRKATAG--LK-LEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVV 119 (128)
Q Consensus 54 IMi~~n~lal~iGrf~i~p-----------~qn~~~~~G--~~-lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiI 119 (128)
||+.||.++|++|||++.| +||++++.+ +. ..+..+.+++|||+|||++|||||||+||++|++++
T Consensus 1 vIs~ST~~~L~lGRFVflp~QR~~v~~~~P~qnG~~~~~a~~~~a~e~~s~l~s~dpaGFtivDvlawGslgh~i~~~il 80 (88)
T TIGR03051 1 VISGSTGLFLALGRFVFLNFQRRNVAKQVPEQNGPKTTGATDFDALQYASLLKSNDPAGFNLVDVLAWGALGHIVAVFIL 80 (88)
T ss_pred CccchhHHHHHhhhheeccchHhhhhhcCccccCcccccchhHHHHHHhhhcccCCCCCcchhhhhhhcchhccEEEEEE
Confidence 5889999999999999988 566655433 32 234579999999999999999999999999999654
No 11
>PF01241 PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR000549 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. Photosystem I (PSI) [] is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. It is found in the chloroplasts of plants and cyanobacteria. PSI is composed of at least 14 different subunits, two of which, PSI-G (gene psaG) and PSI-K (gene psaK), are small hydrophobic proteins of about 7 to 9 Kd and evolutionary related []. Both seem to contain two transmembrane regions. Cyanobacteria contain only PSI-K.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0016020 membrane; PDB: 2O01_G 2WSF_G 2WSE_G 2WSC_G 3PCQ_K 1JB0_K.
Probab=85.58 E-value=0.18 Score=35.76 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCceeeehhhHHHHHHHhhhcccccc
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSA 74 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~q 74 (128)
..+.++|++||++++.+|||.|+-+.
T Consensus 5 ~~v~~imi~~nl~a~~fg~~~i~~~~ 30 (81)
T PF01241_consen 5 PKVAIIMIACNLFAIRFGKAPIQRPN 30 (81)
T ss_dssp TTCHHHHHHHHHHTTCCCCTTSSSSS
T ss_pred hhHHHHHHHHHHHHHHHhheeeccCC
Confidence 46789999999999999999996443
No 12
>PRK10332 hypothetical protein; Provisional
Probab=77.24 E-value=3.5 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHhhhHHHHHHHHH
Q 033067 95 DPAGFTLADTLACGSVGHIIGVGV 118 (128)
Q Consensus 95 dp~GF~l~dvLA~~S~GHIIG~Gi 118 (128)
+..||+++|+|-++.++=|+..|.
T Consensus 7 ~q~GFsL~EvlvAm~i~~i~~~al 30 (107)
T PRK10332 7 NQRGFSLPEVLLAMVLMVMIVTAL 30 (107)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998855443
No 13
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=70.46 E-value=4.5 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=11.3
Q ss_pred CCCCCHHHHHHhhhHHHHH
Q 033067 96 PAGFTLADTLACGSVGHII 114 (128)
Q Consensus 96 p~GF~l~dvLA~~S~GHII 114 (128)
-.|||+.|+|-+..+.=|+
T Consensus 13 ~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 13 QRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHC
Confidence 4699999999998876543
No 14
>PRK10132 hypothetical protein; Provisional
Probab=48.14 E-value=16 Score=26.90 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHhh
Q 033067 107 CGSVGHIIGVGVVLGL 122 (128)
Q Consensus 107 ~~S~GHIIG~GiILGL 122 (128)
|.++|=..|+|+|+|+
T Consensus 87 w~svgiaagvG~llG~ 102 (108)
T PRK10132 87 WCSVGTAAAVGIFIGA 102 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999997
No 15
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.52 E-value=19 Score=24.78 Aligned_cols=16 Identities=56% Similarity=0.823 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHhh
Q 033067 107 CGSVGHIIGVGVVLGL 122 (128)
Q Consensus 107 ~~S~GHIIG~GiILGL 122 (128)
|.|+|=..|+|.+||+
T Consensus 74 ~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 74 WQSVGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7889999999999996
No 16
>PRK10404 hypothetical protein; Provisional
Probab=44.12 E-value=20 Score=25.97 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHhh
Q 033067 107 CGSVGHIIGVGVVLGL 122 (128)
Q Consensus 107 ~~S~GHIIG~GiILGL 122 (128)
|.++|=..|+|.++|+
T Consensus 81 w~avGiaagvGlllG~ 96 (101)
T PRK10404 81 WQGIGVGAAVGLVLGL 96 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999999997
No 17
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=27.57 E-value=54 Score=17.66 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=11.1
Q ss_pred CCCHHHHHHhhhH
Q 033067 98 GFTLADTLACGSV 110 (128)
Q Consensus 98 GF~l~dvLA~~S~ 110 (128)
|||+.|++.+.++
T Consensus 2 GFTLiE~~v~l~i 14 (20)
T PF07963_consen 2 GFTLIELLVALAI 14 (20)
T ss_pred ceeHHHHHHHHHH
Confidence 8999999988764
No 18
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=22.80 E-value=1.3e+02 Score=16.57 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCCCHHHHHHhhhHHHHHHHH
Q 033067 97 AGFTLADTLACGSVGHIIGVG 117 (128)
Q Consensus 97 ~GF~l~dvLA~~S~GHIIG~G 117 (128)
.|||+.|++....+.=++-..
T Consensus 2 ~GfTLiEllial~i~~i~~~~ 22 (26)
T TIGR02532 2 RGFTLIELLVVLAILGILAAI 22 (26)
T ss_pred CceeHHHHHHHHHHHHHHHHH
Confidence 499999999988876655443
No 19
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=71 Score=23.82 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHhh
Q 033067 107 CGSVGHIIGVGVVLGL 122 (128)
Q Consensus 107 ~~S~GHIIG~GiILGL 122 (128)
|.++|---++|++|||
T Consensus 84 Wq~VGvaAaVGlllGl 99 (104)
T COG4575 84 WQGVGVAAAVGLLLGL 99 (104)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8888888899999997
Done!