Query 033067
Match_columns 128
No_of_seqs 112 out of 138
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_K Photosystem I reaction 100.0 6E-49 2E-53 295.7 -3.2 123 1-128 1-126 (131)
2 2wsc_G Photosystem I reaction 100.0 1.3E-32 4.3E-37 212.8 -1.4 108 7-118 31-154 (167)
3 1jb0_K Photosystem 1 reaction 99.9 8.9E-29 3E-33 174.1 2.4 71 49-128 13-83 (83)
4 1vf5_E Protein PET L; photosyn 8.7 2.8E+02 0.0097 15.8 2.5 27 101-127 5-31 (32)
5 2jsd_A Matrix metalloproteinas 7.0 1.2E+02 0.0041 21.1 0.5 18 98-116 105-122 (160)
6 2xs4_A Karilysin protease; hyd 6.7 1.3E+02 0.0043 21.3 0.5 18 98-116 112-129 (167)
7 2zt9_E Cytochrome B6-F complex 6.0 4.5E+02 0.015 14.8 2.5 25 103-127 6-30 (31)
8 1hy7_A Stromelysin-1, MMP-3; m 5.9 1.5E+02 0.005 21.2 0.5 19 97-116 109-127 (173)
9 1q90_G Cytochrome B6F complex 5.8 2E+02 0.007 17.0 0.9 8 116-123 7-14 (37)
10 2ovx_A Matrix metalloproteinas 5.5 1.3E+02 0.0044 21.3 -0.1 18 98-116 108-125 (159)
No 1
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=100.00 E-value=6e-49 Score=295.68 Aligned_cols=123 Identities=72% Similarity=1.109 Sum_probs=83.0
Q ss_pred Ccccc---cCCCccccccCCCCccchhhhhhccccccccCCceeeeeeecCCCceeeehhhHHHHHHHhhhccccccCcC
Q 033067 1 MATSL---MTMPQFSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRK 77 (128)
Q Consensus 1 ma~~~---~~~~~f~glr~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~ 77 (128)
||+++ .|.|||+||||+++.+ ++.+++|+| +|+++++||||||+++++||++||+++|++|||+|.|+||++
T Consensus 1 ma~~~~~~~~~p~f~glr~~~~~~---~~~~~~~~~--~r~~~~~r~~~~gs~valIMi~~n~laLaiGRf~i~p~q~~~ 75 (131)
T 2wsc_K 1 MASQLSAMTSVPQFHGLRTYSSPR---SMATLPSLR--RRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRK 75 (131)
T ss_dssp -----------------------------------------------CCTTTTTTTTHHHHHHHHHTTTGGGGTTCSCCS
T ss_pred CcchhhccccCcccccccccCCcc---ccccccccc--cccceeeEeeecCCCccEEEehhHHHHHHHHHHhcchhhhcc
Confidence 78888 7899999999864322 555666654 458899999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 78 ATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 78 ~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
+++|+++|++++.+++|||+|||++|||||||||||||+|+||||+|+|+|
T Consensus 76 ~~~Gp~lp~~~~~~~s~dpaGF~l~dvLA~gSlGHIIG~GiILGL~~~G~L 126 (131)
T 2wsc_K 76 ATAGLKLEARESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 126 (131)
T ss_dssp CCSSSSSCCCCSSCSCCCTHHHHTTHHHHTTSSSTTTSSSCCCSSCTTCCC
T ss_pred CCCCCCCCccccccccCCCCCCCHHHHHHHhhHHHHHHHHHHHcccccCce
Confidence 999999999899999999999999999999999999999999999999987
No 2
>2wsc_G Photosystem I reaction center subunit V, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_G* 2wsf_G* 2o01_G* 3lw5_G*
Probab=99.97 E-value=1.3e-32 Score=212.85 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=58.8
Q ss_pred CCC--ccccccCCCCccchhhhhhccccccccCCceeeeeeecCCCceeeehhhHHHHHHHhhhccccccCcC-------
Q 033067 7 TMP--QFSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRK------- 77 (128)
Q Consensus 7 ~~~--~f~glr~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~igs~~~lIMi~~n~lal~iGrf~i~p~qn~~------- 77 (128)
++| ||+||||+...++.+++ ..+++++++|++++||||+ ++++||++||.++|++|||++.|+|+++
T Consensus 31 ~~~~~~f~GLrp~~~~~~~~~~-~~~~~~~~~r~a~~vra~~---~tnlIIs~STal~LflGRFvflP~qR~nv~kq~P~ 106 (167)
T 2wsc_G 31 QLKCKSFSGLRPLKLNISSNNS-SSSLSMSSARRSMTCRAEL---SPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPE 106 (167)
T ss_dssp ----------------------------------------------CCCHHHHHHHHHHHTTTTTCSSSSSSCSTTSCSS
T ss_pred CCCcccccccccCCCCCCcccc-ccccccccccccceeEecC---CCcEEEEhhhHHHHHHhhheechhhHhhhhhcCcc
Confidence 445 89999998655555555 5667788899999999996 9999999999999999999997777544
Q ss_pred ------CCCCcc-cccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHH
Q 033067 78 ------ATAGLK-LEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 118 (128)
Q Consensus 78 ------~~~G~~-lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~Gi 118 (128)
.++||. .++..+.+++|||+|||++|||||||+|||||+|+
T Consensus 107 qnG~t~feagD~ra~e~~s~l~TnDPAGFtiVDVLAwGSlGHiIg~~i 154 (167)
T 2wsc_G 107 QNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYI 154 (167)
T ss_dssp SSSCCSCCCSSCCCCCSSCCCTTSSGGGSTTHHHHTTTSSSCSCSSCC
T ss_pred cCCceeeecchhHHHHHhhhcccCCCCcchHHHHHHhhhHHHHHHHhh
Confidence 245553 35566889999999999999999999999999994
No 3
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=99.94 E-value=8.9e-29 Score=174.10 Aligned_cols=71 Identities=31% Similarity=0.538 Sum_probs=45.4
Q ss_pred CCceeeehhhHHHHHHHhhhccccccCcCCCCCcccccccCCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHHhhcccCCC
Q 033067 49 SPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKNLGAL 128 (128)
Q Consensus 49 s~~~lIMi~~n~lal~iGrf~i~p~qn~~~~~G~~lp~~~s~l~s~dp~GF~l~dvLA~~S~GHIIG~GiILGL~n~G~L 128 (128)
-++++||++||++|+++|||+| +|+++|+++|.+++++ |+||+++|+|||+|||||||+|+||||+|+|+|
T Consensus 13 p~v~iIMI~cN~lai~igk~~I-----~~~~~Gp~lP~~~~~~----f~g~~~~~lLat~S~GHIlG~G~ILGL~~~GvL 83 (83)
T 1jb0_K 13 PSVGLVVILCNLFAIALGRYAI-----QSRGKGPGLPIALPAL----FEGFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83 (83)
T ss_dssp -------CHHHHHHHHHHHC-C-----CCSSCCSCC---------------CCTTGGGHHHHHHHHHHHHTTCC------
T ss_pred CccceeehhHHHHHHHHHHHHH-----cCCCCCCCCCccchhc----cCCCCHHHHHHHhhHHHHHHHHHHHhhhhcccC
Confidence 4789999999999999999999 8999999998766666 899999999999999999999999999999986
No 4
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=8.67 E-value=2.8e+02 Score=15.83 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhcccCC
Q 033067 101 LADTLACGSVGHIIGVGVVLGLKNLGA 127 (128)
Q Consensus 101 l~dvLA~~S~GHIIG~GiILGL~n~G~ 127 (128)
+.|...--++=-.+..|..+||+++-.
T Consensus 5 ~i~yi~~l~~~f~iA~GL~fGlrsiKL 31 (32)
T 1vf5_E 5 AVFYIVFIALFFGIAVGIIFAIKSIKL 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555556688899999988754
No 5
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=7.01 E-value=1.2e+02 Score=21.14 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=10.8
Q ss_pred CCCHHHHHHhhhHHHHHHH
Q 033067 98 GFTLADTLACGSVGHIIGV 116 (128)
Q Consensus 98 GF~l~dvLA~~S~GHIIG~ 116 (128)
|..+.. .+.==|||.||.
T Consensus 105 g~~~~~-v~~HEiGHaLGL 122 (160)
T 2jsd_A 105 GFNLFT-VAAHEFGHALGL 122 (160)
T ss_dssp SEEHHH-HHHHHHHHHHTC
T ss_pred chhhHH-HHHHHhHhhhcC
Confidence 444433 345568998874
No 6
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=6.66 E-value=1.3e+02 Score=21.32 Aligned_cols=18 Identities=39% Similarity=0.885 Sum_probs=11.4
Q ss_pred CCCHHHHHHhhhHHHHHHH
Q 033067 98 GFTLADTLACGSVGHIIGV 116 (128)
Q Consensus 98 GF~l~dvLA~~S~GHIIG~ 116 (128)
|..+. -.+.==|||.||.
T Consensus 112 g~~~~-~v~~HEiGHaLGL 129 (167)
T 2xs4_A 112 GIDLI-TVAAHEIGHLLGI 129 (167)
T ss_dssp SEEHH-HHHHHHHHHHHTB
T ss_pred ccchh-hhHHHHHHHhhcC
Confidence 55444 3456678998874
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=5.99 E-value=4.5e+02 Score=14.82 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHHHhhcccCC
Q 033067 103 DTLACGSVGHIIGVGVVLGLKNLGA 127 (128)
Q Consensus 103 dvLA~~S~GHIIG~GiILGL~n~G~ 127 (128)
|...--.+=-.+..|..+||+++-.
T Consensus 6 ~y~~~l~~~~~iA~GL~fGLrsiKL 30 (31)
T 2zt9_E 6 AYIGFLALFTGIAAGLLFGLRSAKI 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455677888999987754
No 8
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=5.93 E-value=1.5e+02 Score=21.22 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=11.6
Q ss_pred CCCCHHHHHHhhhHHHHHHH
Q 033067 97 AGFTLADTLACGSVGHIIGV 116 (128)
Q Consensus 97 ~GF~l~dvLA~~S~GHIIG~ 116 (128)
.|..+.. .+.==|||.||.
T Consensus 109 ~g~~~~~-v~~HEiGHaLGL 127 (173)
T 1hy7_A 109 TGTNLFL-VAAHEIGHSLGL 127 (173)
T ss_dssp SSEEHHH-HHHHHHHHHHTB
T ss_pred ccchhhh-hHHHHHHHhhcC
Confidence 3555543 345678998874
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.76 E-value=2e+02 Score=16.98 Aligned_cols=8 Identities=63% Similarity=1.082 Sum_probs=5.5
Q ss_pred HHHHHhhc
Q 033067 116 VGVVLGLK 123 (128)
Q Consensus 116 ~GiILGL~ 123 (128)
.|+||||-
T Consensus 7 ~GIVlGli 14 (37)
T 1q90_G 7 CGIVLGLV 14 (37)
T ss_dssp HHHHHHHH
T ss_pred hhHHHhhH
Confidence 57788763
No 10
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=5.52 E-value=1.3e+02 Score=21.32 Aligned_cols=18 Identities=33% Similarity=0.744 Sum_probs=11.8
Q ss_pred CCCHHHHHHhhhHHHHHHH
Q 033067 98 GFTLADTLACGSVGHIIGV 116 (128)
Q Consensus 98 GF~l~dvLA~~S~GHIIG~ 116 (128)
|.++. ..+.==|||.||.
T Consensus 108 g~~~~-~va~HEiGHaLGL 125 (159)
T 2ovx_A 108 GYSLF-LVAAHQFGHALGL 125 (159)
T ss_dssp SEEHH-HHHHHHHHHHTTC
T ss_pred ccchh-hhhhhhhhhhhcC
Confidence 55544 3566779998873
Done!