BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033068
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 51 IMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKL 110
I RV+ ++K +DK D K++ + F KDL LDSLD+VE++MA A+KL
Sbjct: 16 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 75
Query: 111 TCCADVARYIA 121
C ++ YIA
Sbjct: 76 MCPQEIVDYIA 86
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 53 HRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTC 112
RV ++ + + K+T A F +DL DSLD VEL+MAF A+K+
Sbjct: 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQT 63
Query: 113 CADVARYIASEAG 125
DV Y+ + G
Sbjct: 64 VGDVINYLKEKVG 76
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 53 HRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTC 112
RV +V + DA KVTE A F DL DSLD VELVMAF A+ +
Sbjct: 7 ERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILT 66
Query: 113 CADVARYI 120
D ++I
Sbjct: 67 VGDAVKFI 74
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 66 DAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYIAS 122
DA KVTE A F+ DL DSLD ELVM +A+K+ D ++I S
Sbjct: 42 DADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINS 98
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 50 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADK 109
EI +V A++ + + KVT A F +DL DSLD VEL+M +A+K
Sbjct: 5 EIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEK 64
Query: 110 LTCCADVARYIASEAG 125
+ D YI ++ G
Sbjct: 65 IRTVKDAVEYIKAKLG 80
>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein From
Anaplasma Phagocytophilum. Seattle Structural Genomics
Center For Infectious Disease Target Anpha.01018.A
Length = 88
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 50 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADK 109
++M VI +K D+ ++ T + KD +LDSLD V+L+M+ A K
Sbjct: 12 QVMESVIGCLKLNDEQ-KQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQK 70
Query: 110 LTCCADVARYIASEAGE 126
L D+ RYIAS++ +
Sbjct: 71 LETVDDICRYIASKSSD 87
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 51 IMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKL 110
++ RV +V D ++ ++F KDL DSLD VELVMAF +A K+
Sbjct: 8 LLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKI 67
Query: 111 TCCADVARYI 120
D YI
Sbjct: 68 ATVQDALSYI 77
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXX 105
+ D+I +VI +V + D +T + F +DL DSLD VEL+MA
Sbjct: 2 STTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDD 61
Query: 106 KADKLTCCADVARYI 120
+A K+ +DV +YI
Sbjct: 62 EATKIKTVSDVIKYI 76
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 51 IMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKL 110
I RV ++ + +VT A F +DL DSLD VELVMA +A+K+
Sbjct: 23 IEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKI 82
Query: 111 TCCADVARYI 120
T YI
Sbjct: 83 TTVQAAIDYI 92
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 51 IMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKL 110
I RV ++ + +VT A F +DL DSLD VELVMA +A+K+
Sbjct: 3 IEERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKI 62
Query: 111 TCCADVARYI 120
T YI
Sbjct: 63 TTVQAAIDYI 72
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 68 HKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYI 120
+VT A F +DL DSLD VELVMA +A+K+T YI
Sbjct: 20 EEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 72
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 68 HKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYI 120
+VT A F +DL DSLD VELVMA +A+K+T YI
Sbjct: 21 EEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYI 73
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 68 HKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYI 120
+VT A F +DL DSLD VELVMA +A+K+T YI
Sbjct: 21 EEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 73
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 51 IMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKL 110
I RV ++ + D +V A F DL DSLD VELVMA +A+K+
Sbjct: 7 IEERVKKIIVEQLGVDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKI 66
Query: 111 TCCADVARYIAS 122
T Y+ S
Sbjct: 67 TTVQAAIDYVNS 78
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 52 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLT 111
+ RV ++ D V A F++DL DSLD VELVM A+K+
Sbjct: 6 LERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIA 65
Query: 112 CCADVARYIASE 123
D YI ++
Sbjct: 66 TVGDAVNYIQNQ 77
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 52 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLT 111
+ RV ++ D V A F++DL DSLD VELVM A+K+
Sbjct: 4 LERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIA 63
Query: 112 CCADVARYIASE 123
D YI ++
Sbjct: 64 TVGDAVNYIQNQ 75
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 69 KVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYI 120
K+ ++F KDL DSLD VEL+MA A K+ D YI
Sbjct: 24 KIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYI 75
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 69 KVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLTCCADVARYI 120
K+ ++F KDL DSLD VEL+MA A K+ D YI
Sbjct: 22 KIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYI 73
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 52 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXXXXXXXKADKLT 111
+ RV ++ D V A F++DL D LD VELVM A+K+
Sbjct: 9 LERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIA 68
Query: 112 CCADVARYIASE 123
D YI ++
Sbjct: 69 TVGDAVNYIQNQ 80
>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia
Burgdorferi
Length = 84
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 42 ASTSANPDEIMHRVIALV-KKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFXXXXXX 100
S + DEI +V +++ ++ DK + ++T + F +DL+ DSLD EL+
Sbjct: 1 GPGSMDNDEIFSKVRSIISEQLDKKE-DEITTDSRFVEDLNADSLDIYELLYLLEEAFDD 59
Query: 101 XXXXXKADKLTCCADVARYIASEAG 125
+A++ DV +I G
Sbjct: 60 KIPENEANEFETVGDVVNFIKKRKG 84
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 143 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 197
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
pdb|4F4Y|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
Length = 362
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 192
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 192
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 192
>pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase
pdb|3BQ1|A Chain A, Insertion Ternary Complex Of Dbh Dna Polymerase
pdb|3BQ2|A Chain A, Post-Insertion Binary Complex Of Dbh Dna Polymerase
pdb|4HYK|A Chain A, Dbh Ternary Complex (substrates Partially Disordered)
Length = 354
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 192
>pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
Length = 354
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 39 QMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMA 93
++ + P++I+ ++IA K + + TE DF +L +D + + V+A
Sbjct: 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLA 192
>pdb|3EIT|A Chain A, The 2.6 Angstrom Crystal Structure Of Chbp, The Cif
Homologue From Burkholderia Pseudomallei
pdb|3EIT|B Chain B, The 2.6 Angstrom Crystal Structure Of Chbp, The Cif
Homologue From Burkholderia Pseudomallei
Length = 281
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 LKQLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKV 70
L +L++ + S PD++ R++A + + DK D HKV
Sbjct: 211 LDELNQLLSKDFSKXPDDVQTRLLASILQIDK-DPHKV 247
>pdb|4HCN|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
pdb|4HCP|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 255
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 LKQLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKV 70
L +L++ + S PD++ R++A + + DK D HKV
Sbjct: 185 LDELNQLLSKDFSKMPDDVQTRLLASILQIDK-DPHKV 221
>pdb|3EIR|A Chain A, Crystal Structure Of Chbp, A Cif Homologue From
Burkholderia Pseudomallei
pdb|3EIR|B Chain B, Crystal Structure Of Chbp, A Cif Homologue From
Burkholderia Pseudomallei
Length = 281
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 LKQLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKV 70
L +L++ + S PD++ R++A + + DK D HKV
Sbjct: 211 LDELNQLLSKDFSKMPDDVQTRLLASILQIDK-DPHKV 247
>pdb|3GQM|A Chain A, Crystal Structure Of Cell Inhibiting Factor (Cif) From
Burkholderia Pseudomallei (Cifbp)
pdb|3GQM|B Chain B, Crystal Structure Of Cell Inhibiting Factor (Cif) From
Burkholderia Pseudomallei (Cifbp)
Length = 276
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 LKQLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKV 70
L +L++ + S PD++ R++A + + DK D HKV
Sbjct: 206 LDELNQLLSKDFSKMPDDVQTRLLASILQIDK-DPHKV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,017,354
Number of Sequences: 62578
Number of extensions: 92595
Number of successful extensions: 222
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 33
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)