Query 033068
Match_columns 128
No_of_seqs 142 out of 1313
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.8 5E-20 1.1E-24 130.8 7.5 123 2-128 5-131 (131)
2 PRK05350 acyl carrier protein; 99.8 2.2E-19 4.8E-24 118.4 8.0 80 46-125 2-81 (82)
3 PRK05883 acyl carrier protein; 99.8 5.9E-19 1.3E-23 119.0 9.3 83 44-126 8-90 (91)
4 CHL00124 acpP acyl carrier pro 99.8 3.4E-19 7.3E-24 117.0 7.9 82 46-127 1-82 (82)
5 PRK07117 acyl carrier protein; 99.8 1E-18 2.2E-23 115.1 7.7 78 46-124 1-79 (79)
6 PRK05828 acyl carrier protein; 99.8 1.3E-18 2.7E-23 115.9 8.3 81 46-127 1-82 (84)
7 PRK12449 acyl carrier protein; 99.8 1.4E-18 2.9E-23 113.7 8.3 79 46-124 1-79 (80)
8 PRK08172 putative acyl carrier 99.8 9.8E-19 2.1E-23 115.8 7.4 77 50-126 4-80 (82)
9 PRK07639 acyl carrier protein; 99.8 5.1E-18 1.1E-22 113.3 8.9 81 46-126 1-84 (86)
10 PTZ00171 acyl carrier protein; 99.7 6.5E-18 1.4E-22 123.1 8.4 84 44-127 64-147 (148)
11 TIGR00517 acyl_carrier acyl ca 99.7 1.1E-17 2.3E-22 108.7 7.1 75 49-123 2-76 (77)
12 COG0236 AcpP Acyl carrier prot 99.7 1.1E-16 2.4E-21 105.0 7.6 77 48-124 3-79 (80)
13 PRK00982 acpP acyl carrier pro 99.7 1.3E-16 2.8E-21 103.6 7.2 76 49-124 2-77 (78)
14 PRK09184 acyl carrier protein; 99.7 2.3E-16 4.9E-21 106.1 8.0 79 47-125 3-88 (89)
15 PRK06508 acyl carrier protein; 99.7 2E-16 4.4E-21 107.1 6.2 79 49-127 2-91 (93)
16 PF00550 PP-binding: Phosphopa 99.6 1.1E-14 2.3E-19 91.2 8.4 67 53-120 1-67 (67)
17 PRK07081 acyl carrier protein; 99.6 4.1E-15 8.9E-20 98.5 6.5 74 52-126 2-79 (83)
18 PRK05087 D-alanine--poly(phosp 99.6 1.3E-14 2.9E-19 95.2 7.2 74 50-123 2-77 (78)
19 TIGR01688 dltC D-alanine--poly 99.3 5.9E-12 1.3E-16 81.8 5.7 68 53-121 2-72 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.0 8.4E-10 1.8E-14 73.7 5.2 79 47-126 7-90 (96)
21 smart00823 PKS_PP Phosphopante 98.8 6.2E-08 1.3E-12 60.9 8.4 74 49-123 11-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.7 3.5E-08 7.6E-13 96.3 8.2 80 46-125 1303-1384(2582)
23 PRK06060 acyl-CoA synthetase; 98.6 2.1E-07 4.7E-12 80.7 8.7 89 35-124 530-619 (705)
24 TIGR03443 alpha_am_amid L-amin 98.3 3.3E-06 7.2E-11 78.1 8.6 76 47-123 845-920 (1389)
25 PRK10252 entF enterobactin syn 98.1 1.2E-05 2.5E-10 73.8 8.0 74 47-123 975-1048(1296)
26 TIGR02813 omega_3_PfaA polyket 98.0 1.2E-05 2.6E-10 79.1 6.5 79 46-124 1207-1287(2582)
27 PRK12467 peptide synthase; Pro 97.9 4E-05 8.7E-10 77.7 7.7 74 46-122 3601-3674(3956)
28 PRK05691 peptide synthase; Val 97.8 6.5E-05 1.4E-09 76.6 8.3 75 46-123 4237-4311(4334)
29 PRK12316 peptide synthase; Pro 97.8 5.8E-05 1.3E-09 77.9 7.6 74 47-123 5069-5142(5163)
30 PRK05691 peptide synthase; Val 97.8 8.6E-05 1.9E-09 75.8 8.1 76 46-124 582-657 (4334)
31 COG3433 Aryl carrier domain [S 97.7 0.00013 2.9E-09 47.1 5.8 70 55-126 3-72 (74)
32 PRK12467 peptide synthase; Pro 97.7 0.0001 2.3E-09 74.8 7.6 74 47-123 1027-1100(3956)
33 PRK12316 peptide synthase; Pro 97.5 0.00022 4.7E-09 73.9 7.3 75 46-123 2512-2586(5163)
34 PF07377 DUF1493: Protein of u 97.2 0.00075 1.6E-08 46.7 5.2 59 49-107 2-64 (111)
35 KOG1202 Animal-type fatty acid 96.8 0.00071 1.5E-08 63.2 2.6 58 52-110 2006-2064(2376)
36 PF10501 Ribosomal_L50: Riboso 96.1 0.07 1.5E-06 36.9 8.6 76 46-122 4-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 93.4 0.43 9.4E-06 39.3 7.7 79 46-124 3-93 (386)
38 KOG1178 Non-ribosomal peptide 87.3 0.75 1.6E-05 43.0 3.9 55 68-123 614-668 (1032)
39 smart00151 SWIB SWI complex, B 82.3 3.6 7.8E-05 26.3 4.5 65 33-98 8-75 (77)
40 KOG2452 Formyltetrahydrofolate 80.7 3.9 8.4E-05 35.7 5.2 72 52-125 324-396 (881)
41 PF08766 DEK_C: DEK C terminal 78.3 6.1 0.00013 23.5 4.3 25 81-105 17-41 (54)
42 PF02201 SWIB: SWIB/MDM2 domai 61.9 1.4 3.1E-05 28.2 -1.2 64 32-96 7-73 (76)
43 PF03765 CRAL_TRIO_N: CRAL/TRI 61.7 5.6 0.00012 23.4 1.5 15 5-19 31-45 (55)
44 PF10273 WGG: Pre-rRNA-process 46.2 28 0.00061 22.6 3.0 34 33-66 37-70 (82)
45 PF00874 PRD: PRD domain; Int 45.5 23 0.00051 21.6 2.5 22 86-107 58-79 (89)
46 COG2255 RuvB Holliday junction 45.2 61 0.0013 26.7 5.3 41 78-118 254-299 (332)
47 COG1669 Predicted nucleotidylt 43.8 1E+02 0.0022 21.0 5.9 56 50-105 9-77 (97)
48 smart00550 Zalpha Z-DNA-bindin 41.8 30 0.00064 21.4 2.5 50 46-101 2-53 (68)
49 PF03471 CorC_HlyC: Transporte 38.1 59 0.0013 20.5 3.6 30 91-123 16-45 (81)
50 KOG1946 RNA polymerase I trans 38.0 30 0.00066 27.2 2.5 73 30-103 104-179 (240)
51 COG1905 NuoE NADH:ubiquinone o 33.9 25 0.00054 26.0 1.4 66 52-125 93-158 (160)
52 COG0851 MinE Septum formation 32.1 60 0.0013 21.7 2.9 31 41-71 32-62 (88)
53 COG2877 KdsA 3-deoxy-D-manno-o 31.8 1.2E+02 0.0027 24.2 5.0 42 78-121 69-112 (279)
54 COG2074 2-phosphoglycerate kin 30.7 52 0.0011 26.6 2.8 42 21-62 94-135 (299)
55 PF09346 SMI1_KNR4: SMI1 / KNR 29.7 37 0.00081 22.1 1.6 17 89-105 5-21 (130)
56 KOG1142 Transcription initiati 28.6 20 0.00044 28.5 0.2 74 34-111 161-234 (258)
57 PF02709 Glyco_transf_7C: N-te 28.2 34 0.00074 21.9 1.2 29 10-43 30-58 (78)
58 PRK08097 ligB NAD-dependent DN 27.1 89 0.0019 27.6 3.8 80 41-122 20-116 (562)
59 PRK00296 minE cell division to 26.3 51 0.0011 21.7 1.8 27 47-73 38-64 (86)
60 PF06755 DUF1219: Protein of u 25.9 1.2E+02 0.0026 21.3 3.5 10 57-66 28-37 (114)
61 PRK14724 DNA topoisomerase III 25.8 1.4E+02 0.003 28.2 5.0 66 32-98 918-986 (987)
62 smart00860 SMI1_KNR4 SMI1 / KN 25.8 63 0.0014 20.2 2.2 17 89-105 5-21 (129)
63 PF13592 HTH_33: Winged helix- 25.6 61 0.0013 19.4 1.9 21 87-107 7-27 (60)
64 PF01452 Rota_NSP4: Rotavirus 25.3 26 0.00057 26.0 0.2 45 7-51 66-121 (173)
65 PF14568 SUKH_6: SMI1-KNR4 cel 25.1 59 0.0013 21.2 2.0 16 90-105 3-18 (120)
66 PF12921 ATP13: Mitochondrial 25.1 2.3E+02 0.0049 19.7 5.0 54 52-105 18-89 (126)
67 PF14261 DUF4351: Domain of un 24.5 1.1E+02 0.0024 18.6 2.9 9 91-99 13-21 (59)
68 PRK13989 cell division topolog 23.6 53 0.0011 21.6 1.4 27 45-71 37-63 (84)
69 PRK13988 cell division topolog 22.0 57 0.0012 22.1 1.4 27 45-71 38-64 (97)
70 COG1191 FliA DNA-directed RNA 21.9 1.1E+02 0.0023 24.2 3.1 39 3-41 84-124 (247)
71 PF03776 MinE: Septum formatio 21.8 1.1E+02 0.0024 19.2 2.6 26 46-71 25-50 (70)
72 PRK13991 cell division topolog 21.7 87 0.0019 20.8 2.2 29 44-72 35-64 (87)
73 PF11198 DUF2857: Protein of u 21.5 3.4E+02 0.0074 20.0 6.9 84 6-102 78-167 (180)
74 PF14023 DUF4239: Protein of u 20.7 2.3E+02 0.0051 20.9 4.6 60 3-64 56-122 (209)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=5e-20 Score=130.79 Aligned_cols=123 Identities=40% Similarity=0.530 Sum_probs=98.4
Q ss_pred cchHHHHHhhhhhccCccccc--cccCCCCchhHHHHHHHHhcCCC--CChHHHHHHHHHHHHHhhCCCCCCCCCccCcc
Q 033068 2 QNIKETILRYVRVRGFNETYW--SYTGTGSRNVLKQLSRQMCASTS--ANPDEIMHRVIALVKKFDKTDAHKVTETADFQ 77 (128)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~ 77 (128)
+++....+++.++.+.+..-. ++.+.+++.. .|+++...+ ++++++.+++..+++.+..+++++++++++|.
T Consensus 5 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~r~~s~~~p~~l~k~~v~~RVl~VVk~~dki~~~k~~~~s~f~ 80 (131)
T KOG1748|consen 5 MSLSLQRLSSRISTPSSLAQQAPSFNFGRTTGL----LRSYSAELPRCLAKKEVVDRVLDVVKKFDKIDPSKLTTDSDFF 80 (131)
T ss_pred HHHHHHHHhhhhcccchhhhcCcccCcccchhH----HHHHhhhhhhhhhHHHHHHHHHHHHHHhhcCCccccchhhHHH
Confidence 345566666666654443321 2333333333 344444444 88999999999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhCCCC
Q 033068 78 KDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAGEKE 128 (128)
Q Consensus 78 ~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~~~~ 128 (128)
.|||+|||+.+|++++|||+|||+||+.+-+++.|+++.++||.++...++
T Consensus 81 ~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d~ke 131 (131)
T KOG1748|consen 81 KDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPDVKE 131 (131)
T ss_pred HhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999987764
No 2
>PRK05350 acyl carrier protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=118.35 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 125 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~ 125 (128)
++++++.+++++++++.+++++++++++++|..++||||+++++++..||++|||+||++++..+.||+++++||.++++
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~~ 81 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLK 81 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHhc
Confidence 57889999999999999999999999999988999999999999999999999999999999999999999999998875
No 3
>PRK05883 acyl carrier protein; Validated
Probab=99.79 E-value=5.9e-19 Score=118.97 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=79.1
Q ss_pred CCCChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 44 TSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 44 ~~~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
.+.+.++|.+++++++++.++++++.++++++|.+++||||+++++++..||++|||+|+++++..+.||+++++||.++
T Consensus 8 ~~~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 8 MTSSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hCC
Q 033068 124 AGE 126 (128)
Q Consensus 124 ~~~ 126 (128)
++.
T Consensus 88 ~~~ 90 (91)
T PRK05883 88 VRD 90 (91)
T ss_pred ccC
Confidence 653
No 4
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.79 E-value=3.4e-19 Score=117.02 Aligned_cols=82 Identities=37% Similarity=0.602 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 125 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~ 125 (128)
|+++++.+++.+++++.++++++.++++++|..++||||+++++++..+|++|||++|++++..+.|++++++||.++++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 80 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKIN 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 56889999999999999999999999999997779999999999999999999999999999999999999999999987
Q ss_pred CC
Q 033068 126 EK 127 (128)
Q Consensus 126 ~~ 127 (128)
+|
T Consensus 81 ~~ 82 (82)
T CHL00124 81 KK 82 (82)
T ss_pred cC
Confidence 65
No 5
>PRK07117 acyl carrier protein; Validated
Probab=99.78 E-value=1e-18 Score=115.11 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHhh-CCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 46 ANPDEIMHRVIALVKKFD-KTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l-~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
|+++++.+++++++++.+ ++++++++++++| .+||+||++++++++.+|++||++||.+++.++.||+++++||.+++
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l-~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQHQFQPEDSL-VDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHCCCCCCh-hhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 467899999999999999 7999999999999 68999999999999999999999999999999999999999998863
No 6
>PRK05828 acyl carrier protein; Validated
Probab=99.78 E-value=1.3e-18 Score=115.91 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHH-hhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 46 ANPDEIMHRVIALVKK-FDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~-~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
|++++|.+++++++++ .+++++++++++++| .+||+|||++++++..||++|||+||.+++..+.|++++++||.++.
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~-~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLDESNINKPY-RELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcccccCCCCH-HhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 5789999999999998 589999999999999 78999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 033068 125 GEK 127 (128)
Q Consensus 125 ~~~ 127 (128)
+++
T Consensus 80 ~~~ 82 (84)
T PRK05828 80 KQK 82 (84)
T ss_pred hcc
Confidence 654
No 7
>PRK12449 acyl carrier protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=113.66 Aligned_cols=79 Identities=28% Similarity=0.561 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
++++++.+++.+++++.+++++..++++++|..++||||+++++++.++|++|||++|++++..+.|++++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 4688999999999999999999999999999889999999999999999999999999999999999999999998875
No 8
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.77 E-value=9.8e-19 Score=115.82 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhCC
Q 033068 50 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAGE 126 (128)
Q Consensus 50 ~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~~ 126 (128)
++.+++++++++.+++++++++++++|..++||||+++++++..||++|||+||.+++.++.|++++++||.++++.
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998764
No 9
>PRK07639 acyl carrier protein; Provisional
Probab=99.76 E-value=5.1e-18 Score=113.28 Aligned_cols=81 Identities=14% Similarity=0.281 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCC-CCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHHH
Q 033068 46 ANPDEIMHRVIALVKKFDKTDA-HKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKA--DKLTCCADVARYIAS 122 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~-~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el--~~~~Tv~dl~~~I~~ 122 (128)
|+++++.++|++++++.++.+. ++++++++|..++|+||+++++++..||++|||+||++++ .++.||+++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 5788999999999999999975 8899999999999999999999999999999999999987 699999999999999
Q ss_pred hhCC
Q 033068 123 EAGE 126 (128)
Q Consensus 123 ~~~~ 126 (128)
+.+.
T Consensus 81 ~~~~ 84 (86)
T PRK07639 81 LQPL 84 (86)
T ss_pred hhcc
Confidence 8754
No 10
>PTZ00171 acyl carrier protein; Provisional
Probab=99.74 E-value=6.5e-18 Score=123.09 Aligned_cols=84 Identities=39% Similarity=0.640 Sum_probs=79.9
Q ss_pred CCCChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 44 TSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 44 ~~~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
..++++++.+++++++++.+++++++++++++|.+++|||||++++++..||++|||+||++++..+.|++++++||.++
T Consensus 64 ~~~~~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~ 143 (148)
T PTZ00171 64 YLLSKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQN 143 (148)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHH
Confidence 34778999999999999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 033068 124 AGEK 127 (128)
Q Consensus 124 ~~~~ 127 (128)
.++|
T Consensus 144 ~~~~ 147 (148)
T PTZ00171 144 NMAK 147 (148)
T ss_pred Hhcc
Confidence 8776
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.73 E-value=1.1e-17 Score=108.68 Aligned_cols=75 Identities=47% Similarity=0.723 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 49 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 49 ~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
+++.+++++++++.+++++++++++++|..++||||+++++++..+|++||+++|++++.++.|++++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 468899999999999999999999999988999999999999999999999999999999999999999999875
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=1.1e-16 Score=105.02 Aligned_cols=77 Identities=40% Similarity=0.614 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 48 PDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 48 ~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
+..+..++++++.+.++.+..+++++++|..++|+|||++++|++.||++|||+||++++.++.|++++++||.++.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred hHHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 45689999999999999999999999999767999999999999999999999999999999999999999999864
No 13
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.68 E-value=1.3e-16 Score=103.58 Aligned_cols=76 Identities=43% Similarity=0.656 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 49 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 49 ~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
.++.+++++++++.++++++.++++++|..++||||+++++++..+|++||+++|++++.++.|++++++++.+++
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 3688999999999999999999999999889999999999999999999999999999999999999999998765
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=106.06 Aligned_cols=79 Identities=14% Similarity=0.297 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHHhhCC---CCCCCCCccCc-cccCCCChhHHHHHHHHHHHHhCCccChhh---hccCCCHHHHHHH
Q 033068 47 NPDEIMHRVIALVKKFDKT---DAHKVTETADF-QKDLSLDSLDRVELVMAFEEEFSVEIPEEK---ADKLTCCADVARY 119 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i---~~~~i~~d~~l-~~dlGlDSL~~veli~~LEe~fgI~i~~~e---l~~~~Tv~dl~~~ 119 (128)
+.+++..+|+++|++.+++ ++++|+++++| ..+||+||++.++++..+|++|||+||+++ +..+.||+++++|
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 4678999999999999985 89999999996 447999999999999999999999998655 4668999999999
Q ss_pred HHHhhC
Q 033068 120 IASEAG 125 (128)
Q Consensus 120 I~~~~~ 125 (128)
|.++.+
T Consensus 83 I~~~~~ 88 (89)
T PRK09184 83 VAAHRT 88 (89)
T ss_pred HHHhhc
Confidence 998654
No 15
>PRK06508 acyl carrier protein; Provisional
Probab=99.66 E-value=2e-16 Score=107.14 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhc-----------cCCCHHHHH
Q 033068 49 DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD-----------KLTCCADVA 117 (128)
Q Consensus 49 ~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~-----------~~~Tv~dl~ 117 (128)
..+.+++.+++++.++++++.++++++|.++||||||++++|+..||++|||+||++++. .+.|++++|
T Consensus 2 ~~i~ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~ 81 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLC 81 (93)
T ss_pred hHHHHHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999874 445888999
Q ss_pred HHHHHhhCCC
Q 033068 118 RYIASEAGEK 127 (128)
Q Consensus 118 ~~I~~~~~~~ 127 (128)
..|.+...+|
T Consensus 82 ~~i~~~~~~~ 91 (93)
T PRK06508 82 AKIDELVAAK 91 (93)
T ss_pred HHHHHHHHhh
Confidence 9998877665
No 16
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.59 E-value=1.1e-14 Score=91.23 Aligned_cols=67 Identities=34% Similarity=0.552 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHH
Q 033068 53 HRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYI 120 (128)
Q Consensus 53 ~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I 120 (128)
++|++++++.+++++++++++++| .++|+||+.+++++..++++||+++|+.++.+++|+++++++|
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~-~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDF-FDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBT-TTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCH-HHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 578999999999999999999999 6899999999999999999999999999999999999999986
No 17
>PRK07081 acyl carrier protein; Provisional
Probab=99.58 E-value=4.1e-15 Score=98.53 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=66.8
Q ss_pred HHHHHHHHHHh--hCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhc--cCCCHHHHHHHHHHhhCC
Q 033068 52 MHRVIALVKKF--DKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD--KLTCCADVARYIASEAGE 126 (128)
Q Consensus 52 ~~~l~~ii~~~--l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~--~~~Tv~dl~~~I~~~~~~ 126 (128)
.++|++++.+. ++++++.++++++| .++||||+++++++..||++|||+||++++. .+.||++++++|.+++++
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l-~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~ 79 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADL-YEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDA 79 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCH-hhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhh
Confidence 57899999998 45567899999999 6899999999999999999999999999984 599999999999988765
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.56 E-value=1.3e-14 Score=95.24 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhcc--CCCHHHHHHHHHHh
Q 033068 50 EIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADK--LTCCADVARYIASE 123 (128)
Q Consensus 50 ~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~--~~Tv~dl~~~I~~~ 123 (128)
++.+++++++.+.++.+..+++++++|..+.++||+++++++..||++|||+||++++.. +.||+++++||.+.
T Consensus 2 ~i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 478899999999999888889999999777779999999999999999999999999954 99999999999875
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.30 E-value=5.9e-12 Score=81.78 Aligned_cols=68 Identities=16% Similarity=0.362 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCccCccccCCC-ChhHHHHHHHHHHHHhCCccChhhh--ccCCCHHHHHHHHH
Q 033068 53 HRVIALVKKFDKTDAHKVTETADFQKDLSL-DSLDRVELVMAFEEEFSVEIPEEKA--DKLTCCADVARYIA 121 (128)
Q Consensus 53 ~~l~~ii~~~l~i~~~~i~~d~~l~~dlGl-DSL~~veli~~LEe~fgI~i~~~el--~~~~Tv~dl~~~I~ 121 (128)
++|+++++++.+.+.....++++| -+.|+ ||++.++++..||++|||++|++++ .++.|++.++++|.
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L-~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLEL-FEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHH-HHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 578999999988776667999999 66665 9999999999999999999999998 89999999999885
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=98.99 E-value=8.4e-10 Score=73.73 Aligned_cols=79 Identities=30% Similarity=0.573 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHHhhCCC-----CCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHH
Q 033068 47 NPDEIMHRVIALVKKFDKTD-----AHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIA 121 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~-----~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~ 121 (128)
+-..+.+++..++..++.-. .+++..... .++..||||+.++++..+|++|+|.||++..+++.|++++++|+.
T Consensus 7 d~nav~~~i~g~~kkyl~~~~~it~~skL~e~rt-~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 7 DINAVTEYILGMLKKYLSEGEEITYTSKLEESRT-KEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp -HHHHHHHHHHHHHTTB-TT----TTS-GGGSBB-TTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccChhhhhHHhcc-ccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 44567888888888886432 233333333 578999999999999999999999999999999999999999998
Q ss_pred HhhCC
Q 033068 122 SEAGE 126 (128)
Q Consensus 122 ~~~~~ 126 (128)
+.-+.
T Consensus 86 ~~r~~ 90 (96)
T PF14573_consen 86 QERQS 90 (96)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 76554
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.79 E-value=6.2e-08 Score=60.88 Aligned_cols=74 Identities=26% Similarity=0.271 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCC-CCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 49 DEIMHRVIALVKKFDKTDAHK-VTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 49 ~~i~~~l~~ii~~~l~i~~~~-i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
..+...+...+...++.+... ++.+.+| .++|+||+..+++...+++.|+++++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPF-RDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCH-HHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 346778888888888887666 4889999 8899999999999999999999999999999999999999998865
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.72 E-value=3.5e-08 Score=96.32 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS--VEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fg--I~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
.+.+++.+++++++++.+|.+.+.++++.+|..|||+||++.+|++..++++|+ .+++++++..+.|++++++|+..+
T Consensus 1303 ~~~~~v~~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1303 TDLIQIQNVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred ccHHHHHHHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999999999999999 899999999999999999999876
Q ss_pred hC
Q 033068 124 AG 125 (128)
Q Consensus 124 ~~ 125 (128)
..
T Consensus 1383 ~~ 1384 (2582)
T TIGR02813 1383 VP 1384 (2582)
T ss_pred cc
Confidence 53
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.59 E-value=2.1e-07 Score=80.67 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHhhCCC-CCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCH
Q 033068 35 QLSRQMCASTSANPDEIMHRVIALVKKFDKTD-AHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCC 113 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~i~~~l~~ii~~~l~i~-~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv 113 (128)
.+..++..........+.+.+...++++++.+ ++.++++.+| .++|+|||+.+++...|++.||+++|...+.+..|+
T Consensus 530 ~~~~~l~~~~~~~~~~~~~~v~~~~a~vl~~~~~~~i~~~~~f-~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~ 608 (705)
T PRK06060 530 TLRERLVALRQERQRLVVDAVCAEAAKMLGEPDPWSVDQDLAF-SELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSI 608 (705)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHHHhCCCChhhCCCCCCh-hhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCH
Confidence 34445544433344556788999999999985 6779999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 033068 114 ADVARYIASEA 124 (128)
Q Consensus 114 ~dl~~~I~~~~ 124 (128)
.+++++|.+.+
T Consensus 609 ~~la~~l~~~~ 619 (705)
T PRK06060 609 SGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.27 E-value=3.3e-06 Score=78.14 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 47 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
....+.+.+.++++++++.+.++++++++| .++|.|||..+++...|++.||+.++..++....|+.+++++|...
T Consensus 845 ~~~~~~~~l~~~~~~vl~~~~~~i~~~~~f-f~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~ 920 (1389)
T TIGR03443 845 EFTETEREIRDLWLELLPNRPATISPDDSF-FDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRL 920 (1389)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccCcCcch-hhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence 445678899999999999987889999999 9999999999999999999999999999999999999999998754
No 25
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.09 E-value=1.2e-05 Score=73.76 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 47 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
....+...+.++++++++++ .++.+++| .++|.|||..+++...|++.||++++..++....|+++++++|.+.
T Consensus 975 ~~~~~e~~l~~~~~~~l~~~--~~~~~~~f-f~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 975 PKTGTETIIAAAFSSLLGCD--VVDADADF-FALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCcCH-HHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 34567889999999999986 68999999 9999999999999999999999999999999999999999999765
No 26
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.99 E-value=1.2e-05 Score=79.12 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhC--CccChhhhccCCCHHHHHHHHHHh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS--VEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fg--I~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
....++...+.+++++..|.+.+.++++.++..|||+||+..++++..++++|+ .+++++++..++|++++++|+...
T Consensus 1207 ~~~~~~~~~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1207 VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred cchhHHHHHHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 456779999999999999999999999999999999999999999999999998 789999999999999999998654
Q ss_pred h
Q 033068 124 A 124 (128)
Q Consensus 124 ~ 124 (128)
.
T Consensus 1287 ~ 1287 (2582)
T TIGR02813 1287 V 1287 (2582)
T ss_pred c
Confidence 4
No 27
>PRK12467 peptide synthase; Provisional
Probab=97.86 E-value=4e-05 Score=77.72 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIAS 122 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~ 122 (128)
....++++.+.++++++++++ .+..+++| .++|.|||..++++..+++.||+++|..++....|++++++++..
T Consensus 3601 ~p~~~~e~~l~~i~~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3601 APRSEVEQQLAAIWADVLGVE--QVGVTDNF-FELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCcch-hcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 345678899999999999985 48999999 999999999999999999999999999999999999999999865
No 28
>PRK05691 peptide synthase; Validated
Probab=97.81 E-value=6.5e-05 Score=76.65 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
....+++..|.++++++++++ .+..+++| .++|.|||.+++++..+++.||++++..++....|+.+++++|...
T Consensus 4237 ~p~~~~e~~l~~iw~~vL~~~--~i~~~d~F-f~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4237 APRNELEQTLATIWADVLKVE--RVGVHDNF-FELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--cCCCCCch-hhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 355678999999999999985 58999999 9999999999999999999999999999999999999999999753
No 29
>PRK12316 peptide synthase; Provisional
Probab=97.79 E-value=5.8e-05 Score=77.91 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 47 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
...++...+.++++++++++ .|..+++| .++|.|||.+++++..|+++||++++..++....|++++++++...
T Consensus 5069 ~~~~~e~~l~~i~~~vL~~~--~i~~~~~F-f~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5069 PRSELEQQVAAIWAEVLQLE--RVGLDDNF-FELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCcHHHHHHHHHHHHHhCCC--CCCCCCCh-hhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 44568899999999999985 58999999 9999999999999999999999999999999999999999999754
No 30
>PRK05691 peptide synthase; Validated
Probab=97.75 E-value=8.6e-05 Score=75.81 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEA 124 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~ 124 (128)
.+..++.+.|.++++++++++ .+.++.+| .++|.|||..+++...++++||+.++..++....|+.++++++....
T Consensus 582 ~~~~~~e~~l~~~~~~vL~~~--~i~~~~~f-f~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~~ 657 (4334)
T PRK05691 582 ASGDELQARIAAIWCEQLKVE--QVAADDHF-FLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQL 657 (4334)
T ss_pred CCcchHHHHHHHHHHHHhCCC--CCCcCCch-hhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHhh
Confidence 445678899999999999984 68999999 99999999999999999999999999999999999999999987654
No 31
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.71 E-value=0.00013 Score=47.09 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhCC
Q 033068 55 VIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAGE 126 (128)
Q Consensus 55 l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~~ 126 (128)
+++.+.+.++..+++++++.++ -+.|+||+-+|.+.....+ =|..|++.++...+|++.=-+.+....+.
T Consensus 3 Lr~~~~~Ll~e~~~~l~dqeNL-i~~GLDSiR~M~L~~~wR~-~G~~i~F~~La~~PTl~aW~qLl~~~~~~ 72 (74)
T COG3433 3 LREQIAELLGESVEELDDQENL-IDYGLDSIRMMALLERWRK-RGADIDFAQLAANPTLAAWWQLLSTRSKQ 72 (74)
T ss_pred HHHHHHHHHcCChhhcCchhhH-HHhchhHHHHHHHHHHHHH-cCCcccHHHHHhCccHHHHHHHHHhcccC
Confidence 4466667777788999999999 9999999999999988865 58899999999999999888888776554
No 32
>PRK12467 peptide synthase; Provisional
Probab=97.69 E-value=0.0001 Score=74.84 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 47 NPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
...++.+.+.++++++++++ .+..+++| .++|.|||..++++..++++||+.++..++.+..|+.++++++...
T Consensus 1027 p~~~~e~~l~~i~~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1027 PQTELEKRLAAIWADVLKVE--RVGLTDNF-FELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCCCc-hhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 44567889999999999985 58999999 9999999999999999999999999999999999999999998754
No 33
>PRK12316 peptide synthase; Provisional
Probab=97.53 E-value=0.00022 Score=73.89 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
....++.+.+.++++++++++ .+..+++| .++|.|||..++++..++++||++++..++.+..|+++++..+...
T Consensus 2512 ~p~~~~e~~l~~iw~~vL~~~--~i~~~d~F-f~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2512 APQEGLEQRLAAIWQAVLKVE--QVGLDDHF-FELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--ccCCCCch-hhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 345677889999999999985 58999999 9999999999999999999999999999999999999999888654
No 34
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.24 E-value=0.00075 Score=46.68 Aligned_cols=59 Identities=29% Similarity=0.483 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhCC----CCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhh
Q 033068 49 DEIMHRVIALVKKFDKT----DAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKA 107 (128)
Q Consensus 49 ~~i~~~l~~ii~~~l~i----~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el 107 (128)
+++.++|.+.+.+..+. ....+++++++..+||++.-++.+++....++|+|+++.-++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 57889999999999887 578899999999999999999999999999999999866544
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.84 E-value=0.00071 Score=63.20 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCC-CCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccC
Q 033068 52 MHRVIALVKKFDKT-DAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKL 110 (128)
Q Consensus 52 ~~~l~~ii~~~l~i-~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~ 110 (128)
.-.+.+.|+.++|+ |...++.++++ .|||+|||+.+|+-..||.+|++-++..++.++
T Consensus 2006 ~~dLiatiA~IlGlrD~~~vn~~asL-aDLGlDSLMsvEikQtLER~~dlVLS~qEiRqL 2064 (2376)
T KOG1202|consen 2006 GRDLIATIAHILGLRDLKAVNDDASL-ADLGLDSLMSVEIKQTLEREFDLVLSAQEIRQL 2064 (2376)
T ss_pred cccHHHHHHHHhcchhHhhccCCCch-hhccchhhhhHHHHHHHhhhhceeeeHHHHHHH
Confidence 33677888999998 67889999999 999999999999999999999999998887443
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=96.14 E-value=0.07 Score=36.90 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCC-CCccCccccCCC-ChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHH
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKV-TETADFQKDLSL-DSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIAS 122 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i-~~d~~l~~dlGl-DSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~ 122 (128)
.+.+++.+.+.+..++.++.+.... ..+..+ .+..+ |--.-..++.++.+.+|..||+..+..+.|++++.+|+..
T Consensus 4 ~~~e~l~~~i~e~~~e~~~~~~~~~~~~~~~~-~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 4 SPPEDLEEIIEESAKEVLGAEGFGSQSWNNDW-LDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCccc-cccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 3567888889999999988754433 234444 44444 4446689999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=93.45 E-value=0.43 Score=39.29 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCC---------CCCCccCc-cccCCCChhHHHHHHHHHHHHhCCc-cChhhh-ccCCCH
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAH---------KVTETADF-QKDLSLDSLDRVELVMAFEEEFSVE-IPEEKA-DKLTCC 113 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~---------~i~~d~~l-~~dlGlDSL~~veli~~LEe~fgI~-i~~~el-~~~~Tv 113 (128)
++.+.|...+..+|+..+..-.. .+..|+.+ ...+|+|||..++|..++-+.|++. -..+++ ..-+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (386)
T TIGR02372 3 LDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRI 82 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccH
Confidence 46677888888888888753222 26777777 5779999999999999999999994 333443 566789
Q ss_pred HHHHHHHHHhh
Q 033068 114 ADVARYIASEA 124 (128)
Q Consensus 114 ~dl~~~I~~~~ 124 (128)
++.++.|.+.-
T Consensus 83 ~~~~~~~~~~~ 93 (386)
T TIGR02372 83 GEWVDLIAHHS 93 (386)
T ss_pred HHHHHHHHhcC
Confidence 99999887543
No 38
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.26 E-value=0.75 Score=42.95 Aligned_cols=55 Identities=24% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 68 HKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 68 ~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
..++++++| .++|.||+..+.++..+..++.++.|..-.....|+..+..-+...
T Consensus 614 ~~~s~d~~f-F~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~ 668 (1032)
T KOG1178|consen 614 AIVSPDSSF-FQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRI 668 (1032)
T ss_pred cccCCCcch-hhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhh
Confidence 468899999 9999999999999999999999999999999999988887665543
No 39
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=82.32 E-value=3.6 Score=26.34 Aligned_cols=65 Identities=12% Similarity=0.262 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHh-hCC--CCCCCCCccCccccCCCChhHHHHHHHHHHHHh
Q 033068 33 LKQLSRQMCASTSANPDEIMHRVIALVKKF-DKT--DAHKVTETADFQKDLSLDSLDRVELVMAFEEEF 98 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~-l~i--~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~f 98 (128)
++.+...+ .....++.++...++++|... +.- +...+..|..+..-+|-|++.+.++...|..+|
T Consensus 8 s~~L~~~l-g~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 8 SPELAKVL-GAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CHHHHHHh-CCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 45555444 457799999999999999977 333 234488888887778888888888888887664
No 40
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=80.69 E-value=3.9 Score=35.75 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhC-CccChhhhccCCCHHHHHHHHHHhhC
Q 033068 52 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFS-VEIPEEKADKLTCCADVARYIASEAG 125 (128)
Q Consensus 52 ~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fg-I~i~~~el~~~~Tv~dl~~~I~~~~~ 125 (128)
.++++.++..++.. .-+++.+++| ..-|..|.+.+.++.++.+..| .++..+++..-.|.++..+.+..++.
T Consensus 324 ~~~~~~iw~~il~k-v~~v~~~tdf-f~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lr 396 (881)
T KOG2452|consen 324 AEAVRSVWQRILPK-VLEVEDSTDF-FKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR 396 (881)
T ss_pred HHHHHHHHHHhcch-heeecccchH-hhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhc
Confidence 45677777777652 2357889999 8999999999999999999887 89999999999999999999888774
No 41
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=78.31 E-value=6.1 Score=23.52 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=16.7
Q ss_pred CCChhHHHHHHHHHHHHhCCccChh
Q 033068 81 SLDSLDRVELVMAFEEEFSVEIPEE 105 (128)
Q Consensus 81 GlDSL~~veli~~LEe~fgI~i~~~ 105 (128)
+++++..-++...||++||+++.+.
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 5778888999999999999998753
No 42
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=61.89 E-value=1.4 Score=28.18 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=43.4
Q ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHHh-hCC--CCCCCCCccCccccCCCChhHHHHHHHHHHH
Q 033068 32 VLKQLSRQMCASTSANPDEIMHRVIALVKKF-DKT--DAHKVTETADFQKDLSLDSLDRVELVMAFEE 96 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~-l~i--~~~~i~~d~~l~~dlGlDSL~~veli~~LEe 96 (128)
.++.+. .+.....+++.++...|+++|.+. +-- +...|..|..|..-+|-|++...++...+..
T Consensus 7 ls~~L~-~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~ 73 (76)
T PF02201_consen 7 LSPELA-EFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKP 73 (76)
T ss_dssp HHHHHH-HHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHH
T ss_pred CCHHHH-HHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHH
Confidence 455555 344445599999999999999998 432 3446888888867777777766655555544
No 43
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=61.74 E-value=5.6 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.4
Q ss_pred HHHHHhhhhhccCcc
Q 033068 5 KETILRYVRVRGFNE 19 (128)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (128)
...||||||+|=++-
T Consensus 31 d~~llRFLRARkf~v 45 (55)
T PF03765_consen 31 DNFLLRFLRARKFDV 45 (55)
T ss_dssp HHHHHHHHHHTTT-H
T ss_pred HHHHHHHHHHccCCH
Confidence 468999999987653
No 44
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=46.21 E-value=28 Score=22.62 Aligned_cols=34 Identities=6% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHhhCCC
Q 033068 33 LKQLSRQMCASTSANPDEIMHRVIALVKKFDKTD 66 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~l~i~ 66 (128)
.......|..+...+.+++.+.|.+++.+.+++.
T Consensus 37 ~~~i~~~f~~~~~~~~~~le~~L~~~m~~eF~~~ 70 (82)
T PF10273_consen 37 AEVIVDWFTENKDPDADDLEDFLEDIMDDEFNTV 70 (82)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhHcCce
Confidence 3344445666666677788888888887777763
No 45
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=45.50 E-value=23 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.450 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCccChhhh
Q 033068 86 DRVELVMAFEEEFSVEIPEEKA 107 (128)
Q Consensus 86 ~~veli~~LEe~fgI~i~~~el 107 (128)
.+-++...+++.||+++|++|+
T Consensus 58 ~a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 58 IAKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 3457888999999999999987
No 46
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=45.16 E-value=61 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=31.0
Q ss_pred ccCCCChhHHHHHHHHHHHHhCCccChhhh-----ccCCCHHHHHH
Q 033068 78 KDLSLDSLDRVELVMAFEEEFSVEIPEEKA-----DKLTCCADVAR 118 (128)
Q Consensus 78 ~dlGlDSL~~veli~~LEe~fgI~i~~~el-----~~~~Tv~dl~~ 118 (128)
++.|+|+++.--|-..++...|=.+.-+.+ .+-.|+.++++
T Consensus 254 d~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~E 299 (332)
T COG2255 254 DELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIE 299 (332)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHh
Confidence 779999999887777777777777776655 44567877765
No 47
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=43.84 E-value=1e+02 Score=20.95 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCC---------CCCCCCCccCc----cccCCCChhHHHHHHHHHHHHhCCccChh
Q 033068 50 EIMHRVIALVKKFDKT---------DAHKVTETADF----QKDLSLDSLDRVELVMAFEEEFSVEIPEE 105 (128)
Q Consensus 50 ~i~~~l~~ii~~~l~i---------~~~~i~~d~~l----~~dlGlDSL~~veli~~LEe~fgI~i~~~ 105 (128)
++..++...+.+..|+ -.++-+|++++ ....|...++.+++...|++-||++++--
T Consensus 9 ~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~ 77 (97)
T COG1669 9 KILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLV 77 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeee
Confidence 3455666666655543 23444555544 33456899999999999999999998643
No 48
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=41.82 E-value=30 Score=21.41 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHhhC--CCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCc
Q 033068 46 ANPDEIMHRVIALVKKFDK--TDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVE 101 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~--i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~ 101 (128)
.+++...++|.+.+.+.-+ +...+ +...+|+++-.+-.++..|+++=-|.
T Consensus 2 ~~~~~~~~~IL~~L~~~g~~~~ta~e------La~~lgl~~~~v~r~L~~L~~~G~V~ 53 (68)
T smart00550 2 LTQDSLEEKILEFLENSGDETSTALQ------LAKNLGLPKKEVNRVLYSLEKKGKVC 53 (68)
T ss_pred CCchHHHHHHHHHHHHCCCCCcCHHH------HHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4567788889999988754 44433 33889999999999999998864443
No 49
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=38.14 E-value=59 Score=20.46 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHhCCccChhhhccCCCHHHHHHHHHHh
Q 033068 91 VMAFEEEFSVEIPEEKADKLTCCADVARYIASE 123 (128)
Q Consensus 91 i~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~ 123 (128)
+..+++.||+++|.+ .+.|++.++-....+
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~~ 45 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQLGR 45 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHHHTS
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHHcCC
Confidence 457789999999885 556888776444333
No 50
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=38.03 E-value=30 Score=27.21 Aligned_cols=73 Identities=7% Similarity=0.185 Sum_probs=58.1
Q ss_pred chhHHHHHHHHhcCCCCChHHHHHHHHHHHHHh-hCC--CCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccC
Q 033068 30 RNVLKQLSRQMCASTSANPDEIMHRVIALVKKF-DKT--DAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIP 103 (128)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~-l~i--~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~ 103 (128)
-.+++.|. ++.....+++-++...|+++|.+. +.- +..+|-.|..|..-+|-..+..+++...|..+|=-.-+
T Consensus 104 ~~ls~~L~-~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~fem~KLL~~H~~~~~d 179 (240)
T KOG1946|consen 104 IPLSPSLA-RFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMFEMLKLLTKHFLKNQD 179 (240)
T ss_pred cccCHHHH-hhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCccceeeHHHHHHHhccCccc
Confidence 34555555 555667799999999999999999 554 35678899999888999999999999999998865443
No 51
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=33.87 E-value=25 Score=26.04 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCCCHHHHHHHHHHhhC
Q 033068 52 MHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLTCCADVARYIASEAG 125 (128)
Q Consensus 52 ~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~Tv~dl~~~I~~~~~ 125 (128)
.+.|.+.+.+.+++.+.+.++|-.| |+.-++=+......=-+-|+.+-+.. .|...+.+.|.+..+
T Consensus 93 s~~l~~~l~~~lgi~~gett~DG~f-------tl~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~ 158 (160)
T COG1905 93 SEALLKALEKKLGIKPGETTADGKF-------TLEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKA 158 (160)
T ss_pred hHHHHHHHHHHhCCCCCCcCCCCeE-------EEeeeeeecccccCCEEEECCchhcc-CCHHHHHHHHHHHhc
Confidence 4678888999999999999999999 66656555555555555566666655 677777777666544
No 52
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=32.12 E-value=60 Score=21.72 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=24.5
Q ss_pred hcCCCCChHHHHHHHHHHHHHhhCCCCCCCC
Q 033068 41 CASTSANPDEIMHRVIALVKKFDKTDAHKVT 71 (128)
Q Consensus 41 ~~~~~~~~~~i~~~l~~ii~~~l~i~~~~i~ 71 (128)
...++-..+.+++.|.++|+.+..++++.++
T Consensus 32 ~~~~pd~l~~Lr~eIl~VI~KYV~id~d~v~ 62 (88)
T COG0851 32 AGLQPDYLEQLRKEILEVISKYVQIDPDKVE 62 (88)
T ss_pred cCCCcchHHHHHHHHHHHHHHHheeCcccEE
Confidence 3345566788999999999999999877654
No 53
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=31.78 E-value=1.2e+02 Score=24.24 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=31.6
Q ss_pred ccCCCChhHHHHHHHHHHHHhCCccC--hhhhccCCCHHHHHHHHH
Q 033068 78 KDLSLDSLDRVELVMAFEEEFSVEIP--EEKADKLTCCADVARYIA 121 (128)
Q Consensus 78 ~dlGlDSL~~veli~~LEe~fgI~i~--~~el~~~~Tv~dl~~~I~ 121 (128)
-..|++. -+++...+.++||+.+= ..+.+++.-+.++++.|+
T Consensus 69 RGpGLee--glki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQ 112 (279)
T COG2877 69 RGPGLEE--GLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQ 112 (279)
T ss_pred cCCCHHH--HHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhc
Confidence 4566664 48999999999999973 345677777888777664
No 54
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=30.74 E-value=52 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=38.1
Q ss_pred cccccCCCCchhHHHHHHHHhcCCCCChHHHHHHHHHHHHHh
Q 033068 21 YWSYTGTGSRNVLKQLSRQMCASTSANPDEIMHRVIALVKKF 62 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~ 62 (128)
-|..+|.|.++.+..+-+++....-...+-|++.++.++...
T Consensus 94 IGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~ 135 (299)
T COG2074 94 IGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPE 135 (299)
T ss_pred ecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHH
Confidence 477899999999999999999999999999999999998854
No 55
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=29.66 E-value=37 Score=22.05 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCccChh
Q 033068 89 ELVMAFEEEFSVEIPEE 105 (128)
Q Consensus 89 eli~~LEe~fgI~i~~~ 105 (128)
+-+..+|+++|+.+|.+
T Consensus 5 ~~I~~~E~~lg~~LP~~ 21 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDD 21 (130)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 45788999999999986
No 56
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.57 E-value=20 Score=28.52 Aligned_cols=74 Identities=16% Similarity=0.354 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCccChhhhccCC
Q 033068 34 KQLSRQMCASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKADKLT 111 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~i~~~el~~~~ 111 (128)
..+.+.+.....++. ++.+.|.+|..++..- -++-...|...=.-|-|..-++...||..|+++||....+...
T Consensus 161 ~dLvqqId~~~~LD~-dVedlLleiADdFV~s---ii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~sd~~~ 234 (258)
T KOG1142|consen 161 DDLVQQIDGTTKLDD-DVEDLLLEIADDFVSS---IIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSSDEKR 234 (258)
T ss_pred hHHHHhhcCcccccH-HHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCccchhheeeeeeccccccCCCccccccc
Confidence 344444543344444 5666666666665421 0222233333445566788899999999999999987765554
No 57
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=28.20 E-value=34 Score=21.88 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=19.6
Q ss_pred hhhhhccCccccccccCCCCchhHHHHHHHHhcC
Q 033068 10 RYVRVRGFNETYWSYTGTGSRNVLKQLSRQMCAS 43 (128)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (128)
.|.+|||+++.+|.++. +..++..|+...
T Consensus 30 ~f~~vnGfde~f~gWG~-----ED~Dl~~Rl~~~ 58 (78)
T PF02709_consen 30 DFEKVNGFDERFWGWGG-----EDDDLYNRLWKA 58 (78)
T ss_dssp HHHHTTSS-SS-TSCSS-----HHHHHHHHHHHT
T ss_pred HHHHcCCCCccccccCc-----cHHHHHHHHHHc
Confidence 47899999999988876 556666655543
No 58
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=27.10 E-value=89 Score=27.62 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=52.2
Q ss_pred hcCCCCChHHHHHHHHHHHHHhhCCCCCCCCCccCccccCCCChhHHHHHHHHHHHHhCCc-----------------cC
Q 033068 41 CASTSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVE-----------------IP 103 (128)
Q Consensus 41 ~~~~~~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~fgI~-----------------i~ 103 (128)
..+++++++.+.+++.++.++.-.-+..--..+.+..+|..+|.| ++=+..||.+|.-- +|
T Consensus 20 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~IsD~eYD~L--~~eL~~LE~~~p~~~~~~spt~~vg~kv~H~~P 97 (562)
T PRK08097 20 AVCPDWSPARAQEEIAALQQQLAQWDDAYWRQGKSEVDDEVYDQL--RARLTQWQRCFGGPEPRDVPLPPLNGKVLHPVA 97 (562)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHH--HHHHHHHHHhCcCcCCCCCCCCCCCCceECCCC
Confidence 445668888888877766665543332223445555577778877 46777778887532 25
Q ss_pred hhhhccCCCHHHHHHHHHH
Q 033068 104 EEKADKLTCCADVARYIAS 122 (128)
Q Consensus 104 ~~el~~~~Tv~dl~~~I~~ 122 (128)
+-.+.+..+..++.+++.+
T Consensus 98 MlSL~k~~s~eel~~w~~~ 116 (562)
T PRK08097 98 HTGVKKLADKQALARWMAG 116 (562)
T ss_pred cccccccCCHHHHHHHHhh
Confidence 5566777888999888765
No 59
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=26.30 E-value=51 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCCc
Q 033068 47 NPDEIMHRVIALVKKFDKTDAHKVTET 73 (128)
Q Consensus 47 ~~~~i~~~l~~ii~~~l~i~~~~i~~d 73 (128)
..+.+.+.|.++|+.+..++.+.++-+
T Consensus 38 ~l~~lk~dIl~VIsKY~~Id~~~v~i~ 64 (86)
T PRK00296 38 YLPQLRKEILEVIAKYVQIDPDKVSVQ 64 (86)
T ss_pred HHHHHHHHHHHHHHHheecChhhEEEE
Confidence 457889999999999999987766443
No 60
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=25.89 E-value=1.2e+02 Score=21.27 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=4.8
Q ss_pred HHHHHhhCCC
Q 033068 57 ALVKKFDKTD 66 (128)
Q Consensus 57 ~ii~~~l~i~ 66 (128)
.++....|+.
T Consensus 28 ~LL~~HYGLt 37 (114)
T PF06755_consen 28 YLLEQHYGLT 37 (114)
T ss_pred HHHHHhcCCc
Confidence 3344445554
No 61
>PRK14724 DNA topoisomerase III; Provisional
Probab=25.80 E-value=1.4e+02 Score=28.21 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=53.0
Q ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHHh-hCC--CCCCCCCccCccccCCCChhHHHHHHHHHHHHh
Q 033068 32 VLKQLSRQMCASTSANPDEIMHRVIALVKKF-DKT--DAHKVTETADFQKDLSLDSLDRVELVMAFEEEF 98 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~~~l~~ii~~~-l~i--~~~~i~~d~~l~~dlGlDSL~~veli~~LEe~f 98 (128)
.|++|.. +.....+++.++...|+++|... |.- +...|..|..|..-+|-|++.+.++...|..++
T Consensus 918 ls~~La~-~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg~~~~~~~~~~~~l~~hl 986 (987)
T PRK14724 918 PSAALAA-VIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMFELAGIVGKHL 986 (987)
T ss_pred CCHHHHH-HhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhCCCcccHHHHHHHHHHhc
Confidence 4566664 44566799999999999999988 554 456799999998889999999999988887654
No 62
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=25.78 E-value=63 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCccChh
Q 033068 89 ELVMAFEEEFSVEIPEE 105 (128)
Q Consensus 89 eli~~LEe~fgI~i~~~ 105 (128)
+-+..+|+++|+++|.+
T Consensus 5 ~~i~~~e~~lg~~LP~~ 21 (129)
T smart00860 5 EEIAELEKKLGIKLPED 21 (129)
T ss_pred HHHHHHHHHHCCCCCHH
Confidence 46788999999999986
No 63
>PF13592 HTH_33: Winged helix-turn helix
Probab=25.56 E-value=61 Score=19.38 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCccChhhh
Q 033068 87 RVELVMAFEEEFSVEIPEEKA 107 (128)
Q Consensus 87 ~veli~~LEe~fgI~i~~~el 107 (128)
.-+|...|+++|||.++..-+
T Consensus 7 ~~~i~~~I~~~fgv~ys~~~v 27 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYSPSGV 27 (60)
T ss_pred HHHHHHHHHHHHCCEEcHHHH
Confidence 457788899999999876544
No 64
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=25.32 E-value=26 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=9.3
Q ss_pred HHHhhhhhccCccccccccCCCCch-----------hHHHHHHHHhcCCCCChHHH
Q 033068 7 TILRYVRVRGFNETYWSYTGTGSRN-----------VLKQLSRQMCASTSANPDEI 51 (128)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i 51 (128)
.+.||++|.++|-.-+.+|.-.+-+ +..+++|++..-..++.-++
T Consensus 66 KViky~ivTI~N~llklaGykeqittkDeie~qmdrivkemrrQlemidkLTtREi 121 (173)
T PF01452_consen 66 KVIKYCIVTIFNTLLKLAGYKEQITTKDEIEKQMDRIVKEMRRQLEMIDKLTTREI 121 (173)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeehhhHHHHhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3679999999999988888766533 34445555554444444444
No 65
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=25.14 E-value=59 Score=21.18 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCccChh
Q 033068 90 LVMAFEEEFSVEIPEE 105 (128)
Q Consensus 90 li~~LEe~fgI~i~~~ 105 (128)
-+..+|+++|+++|.+
T Consensus 3 ~I~~~E~~Lg~~lP~~ 18 (120)
T PF14568_consen 3 EIEEAEKKLGVKLPED 18 (120)
T ss_dssp HHHHHHHHHTS---HH
T ss_pred HHHHHHHHhCCCCCHH
Confidence 4678999999999985
No 66
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=25.06 E-value=2.3e+02 Score=19.68 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCC------CCCccCccccC----------CC--ChhHHHHHHHHHHHHhCCccChh
Q 033068 52 MHRVIALVKKFDKTDAHK------VTETADFQKDL----------SL--DSLDRVELVMAFEEEFSVEIPEE 105 (128)
Q Consensus 52 ~~~l~~ii~~~l~i~~~~------i~~d~~l~~dl----------Gl--DSL~~veli~~LEe~fgI~i~~~ 105 (128)
.+.+..+|..+.|++.+. +.++.++.-+. |- |=-..+.++..+.+.|+|++|..
T Consensus 18 ~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~ 89 (126)
T PF12921_consen 18 LDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKE 89 (126)
T ss_pred HHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 345667777777876544 34444431111 11 12345688889999999999854
No 67
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=24.45 E-value=1.1e+02 Score=18.58 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHhC
Q 033068 91 VMAFEEEFS 99 (128)
Q Consensus 91 i~~LEe~fg 99 (128)
+..+..+||
T Consensus 13 lRlL~rrFG 21 (59)
T PF14261_consen 13 LRLLTRRFG 21 (59)
T ss_pred HHHHHHHcC
Confidence 344555555
No 68
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=23.61 E-value=53 Score=21.59 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHHHhhCCCCCCCC
Q 033068 45 SANPDEIMHRVIALVKKFDKTDAHKVT 71 (128)
Q Consensus 45 ~~~~~~i~~~l~~ii~~~l~i~~~~i~ 71 (128)
+-..+.+...|.++|+.+..++++.++
T Consensus 37 p~~l~~lk~dil~VIsKYv~Id~~~v~ 63 (84)
T PRK13989 37 PDYLPALQKELVAVISKYVKISPDDIR 63 (84)
T ss_pred HHHHHHHHHHHHHHHHHheeeCccceE
Confidence 345578899999999999998877664
No 69
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=21.99 E-value=57 Score=22.14 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHHHhhCCCCCCCC
Q 033068 45 SANPDEIMHRVIALVKKFDKTDAHKVT 71 (128)
Q Consensus 45 ~~~~~~i~~~l~~ii~~~l~i~~~~i~ 71 (128)
+...+.+.+.|.++|+.+.+++.+.++
T Consensus 38 p~~l~~mk~dIl~VIskYv~Id~~~v~ 64 (97)
T PRK13988 38 PELLEQMRKEILEVVARYVEIDPEEGE 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHeeeCccceE
Confidence 445578899999999999999876653
No 70
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription]
Probab=21.91 E-value=1.1e+02 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=21.9
Q ss_pred chHHHHHhhhhhcc--CccccccccCCCCchhHHHHHHHHh
Q 033068 3 NIKETILRYVRVRG--FNETYWSYTGTGSRNVLKQLSRQMC 41 (128)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (128)
-|+|+|++|+|=+. ..++.+.=-+.-...+...+...+.
T Consensus 84 ~I~Gei~d~LR~~~~v~vpR~~~~~~~~i~~~~~~l~~el~ 124 (247)
T COG1191 84 RIRGEILDYLRKNDSVKVPRSLRELGRRIEEAIDELEQELG 124 (247)
T ss_pred HHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999887 4444222222223334444443443
No 71
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=21.85 E-value=1.1e+02 Score=19.18 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCC
Q 033068 46 ANPDEIMHRVIALVKKFDKTDAHKVT 71 (128)
Q Consensus 46 ~~~~~i~~~l~~ii~~~l~i~~~~i~ 71 (128)
-..+.+.+.|.++++.+..++.+.++
T Consensus 25 ~~l~~lk~eil~viskYv~i~~~~v~ 50 (70)
T PF03776_consen 25 DYLEQLKKEILEVISKYVEIDEEDVE 50 (70)
T ss_dssp SSHHHHHHHHHHHHHHHS---CCCEE
T ss_pred HHHHHHHHHHHHHHHhheecCcccEE
Confidence 56688999999999999998766554
No 72
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=21.73 E-value=87 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHHHhhC-CCCCCCCC
Q 033068 44 TSANPDEIMHRVIALVKKFDK-TDAHKVTE 72 (128)
Q Consensus 44 ~~~~~~~i~~~l~~ii~~~l~-i~~~~i~~ 72 (128)
+|...+.+.+.|.++|+.+.. ++++.+.-
T Consensus 35 ~p~~l~~lk~eil~VIsKYv~~Id~~~i~V 64 (87)
T PRK13991 35 TPEMMEQMKADLAEVIKRYVPAIDAEAIEV 64 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHhcccCccceEE
Confidence 334557789999999999998 88777643
No 73
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=21.48 E-value=3.4e+02 Score=20.03 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=57.1
Q ss_pred HHHHhhhhhccCccccccccCCCCchhHHHHHHHHhcC------CCCChHHHHHHHHHHHHHhhCCCCCCCCCccCcccc
Q 033068 6 ETILRYVRVRGFNETYWSYTGTGSRNVLKQLSRQMCAS------TSANPDEIMHRVIALVKKFDKTDAHKVTETADFQKD 79 (128)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~~ii~~~l~i~~~~i~~d~~l~~d 79 (128)
..|=+++|.|..+..-..|-|- ++.--..+|++... ++...++-...|...+.+...-. .-
T Consensus 78 ~~idr~L~lGAS~~mm~~~FGl--s~~ev~~rR~llgi~~~~GR~~~~~ee~~~~iW~~W~~~~~~~-----------~~ 144 (180)
T PF11198_consen 78 QLIDRALRLGASIEMMQRLFGL--SSAEVAARRRLLGIPVRKGRPPALSEEEEAAIWRRWQQLMKKR-----------GV 144 (180)
T ss_pred HHHHHHHHcCCCHHHHHHHHCC--CHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhc-----------CC
Confidence 4566788888888876666555 33333444445443 23556688899999999865431 11
Q ss_pred CCCChhHHHHHHHHHHHHhCCcc
Q 033068 80 LSLDSLDRVELVMAFEEEFSVEI 102 (128)
Q Consensus 80 lGlDSL~~veli~~LEe~fgI~i 102 (128)
...||...+++.+.+-++.++.+
T Consensus 145 ~~~~~~~~Le~~m~~Ae~~~isL 167 (180)
T PF11198_consen 145 DNLDSPDALELMMLLAEETNISL 167 (180)
T ss_pred CCccchHHHHHHHHHHHHhCCCH
Confidence 23678899999999999999943
No 74
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=20.67 E-value=2.3e+02 Score=20.86 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=36.8
Q ss_pred chHHHHHhhhhhccCccccccccCCC-----CchhHHHHHHHHhcCCCCChH--HHHHHHHHHHHHhhC
Q 033068 3 NIKETILRYVRVRGFNETYWSYTGTG-----SRNVLKQLSRQMCASTSANPD--EIMHRVIALVKKFDK 64 (128)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~ii~~~l~ 64 (128)
.+|..+..|++..+..+. ..++.| +.....++.+.+....+.+.. .+...+.+.+.+..+
T Consensus 56 ~~r~~l~~Y~~~vv~~ew--p~~~~g~~~~~~~~~l~~l~~~~~~~~p~~~~~~~~~~~~l~~l~~l~~ 122 (209)
T PF14023_consen 56 EIRALLRAYTRAVVDEEW--PAMSRGELSPEASDALDRLWDALRALEPQTDAQEALQAEALSALNDLID 122 (209)
T ss_pred HHHHHHHHHHHHHHHHhC--hhcccCCCChhhHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHH
Confidence 578899999998766554 666555 444556666666666554333 355555555555543
Done!