BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033069
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A3Q|A Chain A, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2A3Q|B Chain B, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2Q4P|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
pdb|2Q4P|B Chain B, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
Length = 170
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 12 SLDLLRQKMADFAKERDWDKFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWKEEEK 71
+L+ +R+ A+FA ERDW++FH PRN +E+FQWK + G W +E+
Sbjct: 30 TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKER 89
Query: 72 IHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPATACTNGSSNK 123
L EELSDVL+YLV L+ C +DL +A + K + N +YP + GS+ K
Sbjct: 90 AALQEELSDVLIYLVALAARCHVDLPQAVISKXDTNRQRYP-VHLSRGSACK 140
>pdb|2OIE|A Chain A, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|B Chain B, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|C Chain C, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|D Chain D, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIG|A Chain A, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|B Chain B, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|C Chain C, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|D Chain D, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
Length = 111
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 59/96 (61%)
Query: 12 SLDLLRQKMADFAKERDWDKFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWKEEEK 71
+L+ +R+ A+FA ERDW++FH PRN +E+FQWK + G W +E+
Sbjct: 15 TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKER 74
Query: 72 IHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELN 107
L EELSDVL+YLV L+ C +DL +A + K++ N
Sbjct: 75 AALQEELSDVLIYLVALAARCHVDLPQAVISKMDTN 110
>pdb|3OBC|A Chain A, Crystal Structure Of A Pyrophosphatase (Af1178) From
Archaeoglobus Fulgidus At 1.80 A Resolution
pdb|3OBC|B Chain B, Crystal Structure Of A Pyrophosphatase (Af1178) From
Archaeoglobus Fulgidus At 1.80 A Resolution
Length = 118
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 13 LDLLRQKMADFAKERDWDKFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWKEEEKI 72
LD+LR+ F R W K+H+P+N EIFQW + + E K
Sbjct: 17 LDILRE----FRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEF-EVLERRKG 71
Query: 73 HLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYP 112
+ EE++DVL+YL+ L D+ I+ +A RK E N KYP
Sbjct: 72 EVEEEIADVLIYLLFLCDVAEINPIEAVKRKXEKNERKYP 111
>pdb|2Q73|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q9L|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
Length = 100
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 74 LGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKY 111
+ EEL DVL Y+ L++I G++L K K LN +KY
Sbjct: 55 VAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKVKY 92
>pdb|2Q5Z|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
(P43212)
pdb|2Q5Z|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
(P43212)
Length = 114
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 74 LGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKY 111
+ EEL DVL Y+ L++I G++L K K LN +KY
Sbjct: 75 VAEELYDVLYYVCALANIHGVNLEKTRELKEVLNKVKY 112
>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
Length = 401
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 21/81 (25%)
Query: 14 DLLRQKMAD-----FAKERDWDKFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWKE 68
DL+RQ+ ++ A ++++HS +EI+ W + + PD E
Sbjct: 78 DLIRQQTSNDTISPRASSSYYEQYHS--------------LNEIYSWIEVMTERYPDMVE 123
Query: 69 EEKIHLGEELSDVLLYLVRLS 89
KIH+G LY++++S
Sbjct: 124 --KIHIGSSYEKYPLYVLKVS 142
>pdb|1VMG|A Chain A, Crystal Structure Of Mazg Nucleotide Pyrophosphohydrolase
(13816655) From Sulfolobus Solfataricus At 1.46 A
Resolution
Length = 95
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 74 LGEELSDVLLYLVRLSDICGIDLGKAALRKVEL 106
+ EEL+DV+ + V ++++ GID+ +A +K +L
Sbjct: 63 IQEELADVIAWTVSIANLEGIDIEEALKKKYKL 95
>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor
(Tafia) In Complex With Tick-Derived Carboxypeptidase
Inhibitor
Length = 309
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 50 SEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLS 89
+EI+ W + + PD EKIH+G LY++++S
Sbjct: 13 NEIYSWIEVMTERYPD--MVEKIHIGSSYEKYPLYVLKVS 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,668,532
Number of Sequences: 62578
Number of extensions: 121896
Number of successful extensions: 242
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)