Query 033069
Match_columns 128
No_of_seqs 119 out of 1047
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03819 MazG: MazG nucleotide 99.8 4.6E-19 9.9E-24 113.1 8.3 69 33-114 1-73 (74)
2 PRK09562 mazG nucleoside triph 99.6 4.9E-15 1.1E-19 114.8 11.2 92 11-115 7-105 (262)
3 COG1694 MazG Predicted pyropho 99.6 4.9E-14 1.1E-18 94.8 10.6 90 13-114 3-99 (102)
4 PRK09562 mazG nucleoside triph 99.4 8.4E-13 1.8E-17 102.4 9.8 84 18-115 148-231 (262)
5 TIGR00444 mazG MazG family pro 99.4 2.1E-12 4.7E-17 99.4 9.5 79 27-120 12-94 (248)
6 PRK12333 nucleoside triphospha 99.4 8.9E-12 1.9E-16 93.1 10.4 92 14-120 2-99 (204)
7 PRK12334 nucleoside triphospha 99.3 5.3E-12 1.2E-16 98.3 9.3 93 12-119 63-161 (277)
8 PF12643 MazG-like: MazG-like 99.3 2.3E-12 5E-17 86.4 5.3 81 27-120 3-87 (98)
9 TIGR00444 mazG MazG family pro 99.3 1.6E-11 3.6E-16 94.5 10.5 71 34-115 152-222 (248)
10 PLN02346 histidine biosynthesi 98.8 1.2E-07 2.7E-12 73.5 11.7 86 12-113 163-257 (271)
11 COG3956 Protein containing tet 98.8 4.6E-08 1E-12 78.4 8.7 79 20-112 377-455 (488)
12 PF01503 PRA-PH: Phosphoribosy 98.6 3.7E-07 7.9E-12 59.2 8.5 57 38-107 27-83 (83)
13 COG3956 Protein containing tet 98.5 6.9E-07 1.5E-11 71.8 9.6 95 13-122 234-334 (488)
14 PRK12334 nucleoside triphospha 98.2 3E-06 6.5E-11 66.3 5.2 43 73-115 222-264 (277)
15 PRK00400 hisE phosphoribosyl-A 98.1 0.00011 2.4E-09 49.8 10.6 83 13-112 5-93 (105)
16 TIGR03188 histidine_hisI phosp 98.0 7.8E-05 1.7E-09 48.7 9.1 55 35-102 29-83 (84)
17 PRK12333 nucleoside triphospha 98.0 1.2E-05 2.6E-10 60.4 5.3 39 76-114 164-202 (204)
18 COG0140 HisI Phosphoribosyl-AT 97.9 0.00033 7.2E-09 46.4 10.1 56 35-103 29-84 (92)
19 PF04447 DUF550: Protein of un 97.8 0.00024 5.3E-09 47.4 8.2 76 18-113 4-83 (100)
20 PRK02759 bifunctional phosphor 97.7 0.00049 1.1E-08 51.7 10.0 78 12-102 115-198 (203)
21 PHA02602 56 dCTP pyrophosphata 97.0 0.0062 1.3E-07 44.2 7.9 74 39-112 74-166 (172)
22 PF08761 dUTPase_2: dUTPase; 96.5 0.0053 1.2E-07 44.5 5.0 82 13-99 5-95 (167)
23 KOG4311 Histidinol dehydrogena 95.8 0.044 9.5E-07 43.2 7.0 63 34-112 271-333 (359)
24 COG4997 Uncharacterized conser 90.6 2.7 5.9E-05 27.5 7.2 36 75-110 54-89 (95)
25 COG4508 Dimeric dUTPase [Carbo 90.5 1.2 2.7E-05 31.7 6.0 71 15-93 8-83 (161)
26 COG4696 Uncharacterized protei 89.2 1.9 4E-05 31.2 6.2 47 71-117 92-139 (180)
27 COG1694 MazG Predicted pyropho 82.1 3.7 8E-05 27.0 4.6 55 35-101 31-86 (102)
28 PF06892 Phage_CP76: Phage reg 70.2 38 0.00083 24.4 7.7 53 34-90 89-141 (162)
29 PHA02591 hypothetical protein; 61.9 7.3 0.00016 25.1 2.0 32 68-99 45-76 (83)
30 PRK13710 plasmid maintenance p 57.9 8.3 0.00018 24.3 1.8 33 85-117 13-45 (72)
31 PF07362 CcdA: Post-segregatio 55.4 15 0.00033 23.0 2.7 33 85-117 13-45 (72)
32 PF06940 DUF1287: Domain of un 50.5 27 0.00059 25.5 3.7 33 78-113 36-68 (164)
33 PF12651 RHH_3: Ribbon-helix-h 50.2 45 0.00097 18.6 4.8 29 84-112 16-44 (44)
34 PF10543 ORF6N: ORF6N domain; 48.8 33 0.00072 22.0 3.6 29 84-113 14-42 (88)
35 PRK10328 DNA binding protein, 47.7 96 0.0021 21.8 8.6 31 72-102 48-78 (134)
36 COG3286 Uncharacterized protei 46.3 1.1E+02 0.0025 23.0 6.5 68 28-114 110-177 (204)
37 PF08761 dUTPase_2: dUTPase; 45.4 51 0.0011 23.6 4.5 36 76-111 125-160 (167)
38 PF02520 DUF148: Domain of unk 45.3 89 0.0019 20.7 11.3 86 8-114 13-98 (113)
39 KOG1655 Protein involved in va 45.0 95 0.0021 23.5 5.9 63 12-81 105-170 (218)
40 cd03195 GST_C_4 GST_C family, 43.2 42 0.00091 22.0 3.6 33 78-110 71-104 (114)
41 cd07644 I-BAR_IMD_BAIAP2L2 Inv 38.2 89 0.0019 23.8 4.9 30 73-102 61-90 (215)
42 COG3749 Uncharacterized protei 37.6 13 0.00028 27.1 0.3 46 77-126 109-154 (167)
43 COG3079 Uncharacterized protei 37.3 1.7E+02 0.0037 21.7 6.4 16 41-56 122-137 (186)
44 PF08913 VBS: Vinculin Binding 36.0 1.5E+02 0.0032 20.6 8.5 85 12-101 1-98 (125)
45 PF13817 DDE_Tnp_IS66_C: IS66 34.7 69 0.0015 17.6 3.0 28 85-113 2-29 (39)
46 PF12844 HTH_19: Helix-turn-he 34.5 36 0.00077 19.8 2.0 18 83-100 42-59 (64)
47 PF11020 DUF2610: Domain of un 34.4 81 0.0018 20.4 3.6 34 73-106 45-78 (82)
48 PF08418 Pol_alpha_B_N: DNA po 31.7 53 0.0012 24.9 2.9 32 79-110 9-40 (253)
49 PHA01083 hypothetical protein 31.0 48 0.001 23.8 2.4 20 85-104 49-68 (149)
50 COG3612 Uncharacterized protei 30.9 91 0.002 22.5 3.8 33 73-105 117-151 (157)
51 PF12668 DUF3791: Protein of u 29.3 88 0.0019 18.6 3.1 23 81-103 4-26 (62)
52 PF13443 HTH_26: Cro/C1-type H 28.7 37 0.00081 19.6 1.3 18 83-100 41-58 (63)
53 PF06262 DUF1025: Possibl zinc 28.0 1.1E+02 0.0024 20.2 3.7 26 72-99 67-92 (97)
54 cd01169 HMPP_kinase 4-amino-5- 27.6 1.5E+02 0.0033 21.7 4.8 32 77-108 205-236 (242)
55 PF09999 DUF2240: Uncharacteri 27.6 1.1E+02 0.0023 21.9 3.7 30 72-101 110-142 (144)
56 PF12637 TSCPD: TSCPD domain; 26.9 1.5E+02 0.0032 19.2 4.1 26 76-101 37-62 (95)
57 PF13943 WPP: WPP domain 26.4 1.8E+02 0.004 19.4 4.4 44 67-110 37-82 (99)
58 PF13413 HTH_25: Helix-turn-he 26.2 90 0.0019 18.6 2.7 20 79-98 42-61 (62)
59 PF04221 RelB: RelB antitoxin; 26.1 1.7E+02 0.0038 18.3 5.3 25 86-110 17-41 (83)
60 PF00984 UDPG_MGDP_dh: UDP-glu 25.7 68 0.0015 21.0 2.3 20 87-106 27-46 (96)
61 cd03194 GST_C_3 GST_C family, 25.6 1.2E+02 0.0027 19.8 3.6 32 78-109 72-104 (114)
62 TIGR02384 RelB_DinJ addiction 25.5 1.4E+02 0.0031 18.9 3.8 25 86-110 18-42 (83)
63 PF00816 Histone_HNS: H-NS his 25.5 1.9E+02 0.004 18.4 5.0 27 73-99 17-43 (93)
64 cd07645 I-BAR_IMD_BAIAP2L1 Inv 25.3 64 0.0014 24.8 2.3 29 74-102 62-90 (226)
65 PF06569 DUF1128: Protein of u 24.6 1.9E+02 0.0041 18.2 4.1 40 35-81 30-69 (71)
66 PHA01976 helix-turn-helix prot 24.5 82 0.0018 18.3 2.3 17 84-100 46-62 (67)
67 CHL00165 ftrB ferredoxin thior 24.5 2.1E+02 0.0046 19.7 4.5 30 1-30 1-30 (116)
68 PF08689 Med5: Mediator comple 24.1 4.4E+02 0.0095 24.7 7.8 34 68-101 537-570 (989)
69 PF12864 DUF3822: Protein of u 23.3 44 0.00095 25.4 1.2 21 78-98 206-226 (253)
70 COG0280 Pta Phosphotransacetyl 23.0 86 0.0019 25.4 2.8 25 74-98 174-198 (327)
71 PF09869 DUF2096: Uncharacteri 22.6 1.8E+02 0.0039 21.4 4.1 39 70-109 50-88 (169)
72 PF09691 PulS_OutS: Bacterial 22.5 2.2E+02 0.0047 19.3 4.3 33 14-46 49-81 (109)
73 PRK12413 phosphomethylpyrimidi 22.0 2.2E+02 0.0047 21.2 4.7 32 77-108 206-237 (253)
74 PRK08154 anaerobic benzoate ca 21.7 4E+02 0.0086 20.9 7.0 30 2-31 15-44 (309)
75 PRK08176 pdxK pyridoxal-pyrido 21.3 2.2E+02 0.0047 21.9 4.7 32 77-108 230-261 (281)
76 KOG4350 Uncharacterized conser 21.2 1.3E+02 0.0028 25.7 3.5 34 74-107 110-144 (620)
77 PF08543 Phos_pyr_kin: Phospho 21.1 2.4E+02 0.0052 21.2 4.8 36 74-109 195-230 (246)
78 PRK11235 bifunctional antitoxi 21.0 2E+02 0.0044 18.3 3.7 24 87-110 18-41 (80)
79 PRK12412 pyridoxal kinase; Rev 20.9 2.1E+02 0.0046 21.7 4.6 34 77-110 210-243 (268)
80 cd01173 pyridoxal_pyridoxamine 20.8 2.4E+02 0.0051 20.9 4.7 32 78-109 216-247 (254)
81 PF12221 HflK_N: Bacterial mem 20.3 1.3E+02 0.0027 16.9 2.3 19 94-112 21-39 (42)
No 1
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=99.79 E-value=4.6e-19 Score=113.08 Aligned_cols=69 Identities=48% Similarity=0.741 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHh
Q 033069 33 HSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDI----CGIDLGKAALRKVELNA 108 (128)
Q Consensus 33 ~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~----lgIDle~al~~k~~k~~ 108 (128)
+||..++.+|.+|+|||++++.+ ++.+++.+|||||||+++.+|+. +|||+++++..+++|+.
T Consensus 1 qt~~~~~~~l~eE~~El~~ai~~-------------~~~~~l~eElgDvl~~l~~la~~~~~~~~idle~~~~~~~~K~~ 67 (74)
T PF03819_consen 1 QTPESLLLKLIEEVGELAEAIRK-------------EDRENLEEELGDVLFYLLQLARILEERLGIDLEEALERKMEKLE 67 (74)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHCHTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999975 25779999999999999999998 99999999999999999
Q ss_pred hhCCCc
Q 033069 109 IKYPAT 114 (128)
Q Consensus 109 ~R~~~~ 114 (128)
+|||+-
T Consensus 68 ~R~p~~ 73 (74)
T PF03819_consen 68 RRYPHV 73 (74)
T ss_dssp HHSGGG
T ss_pred ccCCCC
Confidence 999984
No 2
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.62 E-value=4.9e-15 Score=114.82 Aligned_cols=92 Identities=22% Similarity=0.240 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHH
Q 033069 11 VSLDLLRQKMADFAKE---RDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVR 87 (128)
Q Consensus 11 m~l~elq~~i~~~~~~---~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~ 87 (128)
-++..|...+...... +.|++.+|+..+..+|.||++||.++|.. ++.+++.+|||||||.++.
T Consensus 7 ~~~~~l~~~~~~lr~~~~GcpWd~~Qt~~sl~~~l~EE~~El~~ai~~-------------~d~~~l~eElGDvL~~vv~ 73 (262)
T PRK09562 7 EAIDRLLEIMARLRDPEGGCPWDKEQTFASLAPYTIEEAYEVVDAIER-------------GDLDDLREELGDLLLQVVF 73 (262)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHH
Confidence 3578888888888865 78999999999999999999999999963 2578899999999999999
Q ss_pred HHHHc----CCCHHHHHHHHHHHHhhhCCCcc
Q 033069 88 LSDIC----GIDLGKAALRKVELNAIKYPATA 115 (128)
Q Consensus 88 lA~~l----gIDle~al~~k~~k~~~R~~~~~ 115 (128)
+|+++ ++|+++++....+|+.+||||-+
T Consensus 74 ~a~~~~e~~~~d~e~vl~~~~~K~~~R~p~vf 105 (262)
T PRK09562 74 HAQMAEEQGAFDFADVVEAISDKLIRRHPHVF 105 (262)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhhchhhc
Confidence 99999 89999999999999999999943
No 3
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=99.57 E-value=4.9e-14 Score=94.81 Aligned_cols=90 Identities=34% Similarity=0.448 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHH
Q 033069 13 LDLLRQKMADFAKER---DWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLS 89 (128)
Q Consensus 13 l~elq~~i~~~~~~~---~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 89 (128)
+..+...+.++.... .|+...+|..+...+++|+|||++++++. .+..++++||||+|++++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eE~gEv~eai~~~------------~~~~~l~eELgDvL~~v~~~a 70 (102)
T COG1694 3 LEKLLDIMAQLRDPEGGCPWDEEQTPESLLLYLVEEAGEVAEAIRKE------------EDLEDLKEELGDVLADVLFLA 70 (102)
T ss_pred HHHHHHHHHHHHhHhccCcccCcCCHHHHHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554 45556689999999999999999999852 167899999999999999999
Q ss_pred HHcCCCHHHHHHHHHH----HHhhhCCCc
Q 033069 90 DICGIDLGKAALRKVE----LNAIKYPAT 114 (128)
Q Consensus 90 ~~lgIDle~al~~k~~----k~~~R~~~~ 114 (128)
+.+++|++.++..++. ++.+|+|+.
T Consensus 71 ~~~~~~~~~~~~~v~~~~~~k~~rr~p~~ 99 (102)
T COG1694 71 NLLDIDLEFALEEVVRKIAEKLERRHPHV 99 (102)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhcccc
Confidence 9999888766666555 667778873
No 4
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.44 E-value=8.4e-13 Score=102.38 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHH
Q 033069 18 QKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLG 97 (128)
Q Consensus 18 ~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle 97 (128)
++|.+++...|++- .++..++.++.+|++||.+++.. ++.+.+++||||+||.|+.+|+.+|||++
T Consensus 148 ~KiqkrAa~~Gf~w-~~~~~~~~kl~EE~~El~~Ai~~-------------~~~~~l~eElGDlLf~lv~lAr~~~id~E 213 (262)
T PRK09562 148 YKIQKKAARVGFDW-ESLEPVLDKVEEEIDELKEALAQ-------------GDQAKIEEEFGDLLFALVNLARHLGIDPE 213 (262)
T ss_pred HHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHHHHc-------------cChhhHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 35566666665443 25778899999999999999863 25678999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCcc
Q 033069 98 KAALRKVELNAIKYPATA 115 (128)
Q Consensus 98 ~al~~k~~k~~~R~~~~~ 115 (128)
+||...+.|+.+|||+-+
T Consensus 214 ~aL~~a~~Kf~rR~~~vE 231 (262)
T PRK09562 214 AALRKANAKFERRFRAVE 231 (262)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 999999999999999743
No 5
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=99.39 E-value=2.1e-12 Score=99.36 Aligned_cols=79 Identities=25% Similarity=0.254 Sum_probs=71.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHH
Q 033069 27 RDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRL---SDICG-IDLGKAALR 102 (128)
Q Consensus 27 ~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~l---A~~lg-IDle~al~~ 102 (128)
++|++.+|...+.-.+.||+.||.++|.. ++.+++.+||||+|+.++.+ |+..| +|+++++..
T Consensus 12 cpWd~~Qt~~sl~~~l~EE~~El~~Ai~~-------------~d~~~l~eELGDlL~qvv~~a~iar~~g~f~~edvl~~ 78 (248)
T TIGR00444 12 CPWDKKQTFQSLIPYTLEETYEVLEAIAR-------------EDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCAG 78 (248)
T ss_pred cCCCcccChHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 68999889999999999999999999973 35788999999999999998 58999 999999999
Q ss_pred HHHHHhhhCCCccccCCC
Q 033069 103 KVELNAIKYPATACTNGS 120 (128)
Q Consensus 103 k~~k~~~R~~~~~~~g~~ 120 (128)
..+|+++|||| +.|..
T Consensus 79 ~~~K~irRhph--Vf~~~ 94 (248)
T TIGR00444 79 ISEKLVRRHPH--VFADV 94 (248)
T ss_pred HHHHHHhhchh--hhhcc
Confidence 99999999999 55543
No 6
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.36 E-value=8.9e-12 Score=93.11 Aligned_cols=92 Identities=23% Similarity=0.216 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHH
Q 033069 14 DLLRQKMADFAKE--RDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDI 91 (128)
Q Consensus 14 ~elq~~i~~~~~~--~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 91 (128)
.+|.+.+...... +.|++.+|+..+.-.|.||+.||.++|.. ++.+++.+||||+|+.++..|..
T Consensus 2 ~~L~~im~~LR~p~GCPWDr~QT~~SL~~yllEE~yEv~dAI~~-------------~d~~~l~EELGDlLlqVvfha~i 68 (204)
T PRK12333 2 ERLLEVMRRLRGPDGCPWDREQTHESLRPYLLEEAAEAVDALSE-------------GDPQELAEELGDVLLQVAFHSVI 68 (204)
T ss_pred HHHHHHHHHHhCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 68999999999999999999999999973 36789999999999999877655
Q ss_pred cC----CCHHHHHHHHHHHHhhhCCCccccCCC
Q 033069 92 CG----IDLGKAALRKVELNAIKYPATACTNGS 120 (128)
Q Consensus 92 lg----IDle~al~~k~~k~~~R~~~~~~~g~~ 120 (128)
.. +|+++++..-.+|+.+|+|| |.|+.
T Consensus 69 aee~g~F~~~DV~~~i~~KlirRHPH--VFg~~ 99 (204)
T PRK12333 69 AEEEGRFTYPDVERGIVEKLIRRHPH--VFGDV 99 (204)
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCc--cCCCC
Confidence 43 89999999999999999999 66765
No 7
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.35 E-value=5.3e-12 Score=98.33 Aligned_cols=93 Identities=23% Similarity=0.186 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDI 91 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 91 (128)
.|..+++.+...+...+|++.+|...+.-.|.||+.||.++|.. ++.+++.+||||+|+.++.+|++
T Consensus 63 aL~~a~~I~~rlr~~gpWd~~QTh~sl~~~l~EE~~El~eAI~~-------------~d~~~l~EELGDlLfqVvf~Ari 129 (277)
T PRK12334 63 RLLDAVAVMDRLRSPGPWESEQTHRSLARYLLEETYELLDAIES-------------GDRDELREELGDVLLQVLFHARI 129 (277)
T ss_pred HHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666669999888889999999999999999962 35778999999999999999999
Q ss_pred cCCCHH------HHHHHHHHHHhhhCCCccccCC
Q 033069 92 CGIDLG------KAALRKVELNAIKYPATACTNG 119 (128)
Q Consensus 92 lgIDle------~al~~k~~k~~~R~~~~~~~g~ 119 (128)
+++|.+ +++....+|+.+|||| +.|+
T Consensus 130 a~~~~e~~F~~~dvl~~~~~KfirRhPh--Vf~~ 161 (277)
T PRK12334 130 AEEAPEDPFDIDDVAATLVAKLVRRHPH--VFAD 161 (277)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHhHH--hccC
Confidence 976665 7999999999999999 5553
No 8
>PF12643 MazG-like: MazG-like family
Probab=99.33 E-value=2.3e-12 Score=86.42 Aligned_cols=81 Identities=31% Similarity=0.470 Sum_probs=63.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHH
Q 033069 27 RDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGID---LGKAALRK 103 (128)
Q Consensus 27 ~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgID---le~al~~k 103 (128)
++|..++.++..++. |++|+.++..+ |. ....+.+.+|||||++|+..||+.+||| +++++..|
T Consensus 3 rn~k~ie~lK~~ll~---el~elfq~~~~------~~----~~~~e~i~deLAdvii~~ylLa~rLGid~~~lD~~i~~K 69 (98)
T PF12643_consen 3 RNWKQIENLKDELLS---ELLELFQWLTS------GS----EVAQEAIKDELADVIIYCYLLADRLGIDFRELDEIIKEK 69 (98)
T ss_pred hhHHHHHhHHHHHHH---HHHHHHhhccc------Cc----chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 467666667665443 66666555432 21 2467899999999999999999999999 99999999
Q ss_pred HHHHhhhCCC-ccccCCC
Q 033069 104 VELNAIKYPA-TACTNGS 120 (128)
Q Consensus 104 ~~k~~~R~~~-~~~~g~~ 120 (128)
+.++...||. +...|+.
T Consensus 70 L~~~~~k~~~~Ek~~gdl 87 (98)
T PF12643_consen 70 LKKNIEKYPVLEKWYGDL 87 (98)
T ss_pred HHhcccccchHHHHhccH
Confidence 9999999998 6666664
No 9
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=99.32 E-value=1.6e-11 Score=94.49 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 34 SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 34 ~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
+....+.++.+|++||.+++... +.+.+.+++||||+||.|+.+|+++|||++.||...+.||.+||..
T Consensus 152 ~~~~~~~k~~EE~~El~~a~~~~-----------~~~~~~ieeElGDlLFalvnlAr~~giDpE~ALr~a~~KF~~Rf~~ 220 (248)
T TIGR00444 152 DVSPVWDKVYEELDEVMYEARQA-----------VVEQNKLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRFRE 220 (248)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 36677899999999999998532 1245678999999999999999999999999999999999999986
Q ss_pred cc
Q 033069 114 TA 115 (128)
Q Consensus 114 ~~ 115 (128)
-+
T Consensus 221 ~E 222 (248)
T TIGR00444 221 VE 222 (248)
T ss_pred HH
Confidence 43
No 10
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=98.79 E-value=1.2e-07 Score=73.50 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHh----cCCCC-----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKE----RDWDK-----FHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVL 82 (128)
Q Consensus 12 ~l~elq~~i~~~~~~----~~w~~-----~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL 82 (128)
.|.+|...|.+-... ..-.. ++++..+..+|.||++|+..+..+. ++++++.+|+||+|
T Consensus 163 ~L~~L~~~I~~Rk~~~~~~~~e~SYT~~L~~~~~~I~kKlgEEA~EliiAa~~~------------~dre~lieElADLL 230 (271)
T PLN02346 163 TLYSLEETIQQRKEEAVPQGGKPSWTKRLLQDPELLCSKIREEAGELCQTLEEN------------EGKERTASEMADVL 230 (271)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCchHHHHhcCHHHHHHHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHH
Confidence 478888888776544 21111 1346678899999999999886321 35789999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 83 LYLVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
++++.|+..+||++++++ +++.+|+..
T Consensus 231 yHlLVLl~~~GIsleeV~----~eL~~R~~~ 257 (271)
T PLN02346 231 YHAMVLLAKQGVKMEDVL----EVLRKRFSQ 257 (271)
T ss_pred HHHHHHHHHcCCCHHHHH----HHHHHhhcc
Confidence 999999999999999998 577778753
No 11
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=98.76 E-value=4.6e-08 Score=78.38 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=63.3
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 20 MADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 20 i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
++.-+...+++- .+.+..+.++.||.-|+.+... | -.+..+++|+||+||.++.+|+.++||.++|
T Consensus 377 lqkKaakvgFD~-~~ve~~w~k~~Ee~~e~~ev~~-------g------~h~~~~a~efgd~lf~lvniarfy~i~~eea 442 (488)
T COG3956 377 LQKKAAKVGFDW-ANVEEAWDKVLEEMREVKEVYK-------G------IHRDRIAEEFGDLLFSLVNIARFYDIDSEEA 442 (488)
T ss_pred HHHHHHhcCCCH-HhHHHHHHHHHHHhhhHHHHHh-------c------hhHHHHHHHhhhhhhhhhhHHHHhcCCHHHH
Confidence 344444444432 2577889999999999666543 1 2678899999999999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 033069 100 ALRKVELNAIKYP 112 (128)
Q Consensus 100 l~~k~~k~~~R~~ 112 (128)
+....+||++||.
T Consensus 443 l~~tndkf~rrf~ 455 (488)
T COG3956 443 LNYTNDKFIRRFY 455 (488)
T ss_pred HhhhHHHHHHHHH
Confidence 9999999999974
No 12
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=98.63 E-value=3.7e-07 Score=59.17 Aligned_cols=57 Identities=33% Similarity=0.325 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033069 38 LLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELN 107 (128)
Q Consensus 38 ~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~ 107 (128)
...++.||++|+..+... +++.++.+|+||++++++.++...|||+++++..-...|
T Consensus 27 ~~~kl~EE~~E~~~A~~~-------------~d~~~~~~e~aDlly~~~~~~~~~gi~~~~v~~ev~~~N 83 (83)
T PF01503_consen 27 RLKKLGEEAGELIEAAKN-------------GDKEEVADELADLLYHLLGLLASMGIDLDEVFDEVHRRN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 478899999999999863 378999999999999999999999999999998765544
No 13
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=98.54 E-value=6.9e-07 Score=71.75 Aligned_cols=95 Identities=25% Similarity=0.283 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 033069 13 LDLLRQKMADFAKER--DWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSD 90 (128)
Q Consensus 13 l~elq~~i~~~~~~~--~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 90 (128)
+..+.+.+.....+. .|++.++-..+-..|.||+.|+.+||.. ++..++-+||||+|+.++.=|.
T Consensus 234 F~~~~~ii~~LrgenGCPWDk~QtHqtlKryliEE~yEl~EAId~-------------edddhmvEELGDvLlQVllHaq 300 (488)
T COG3956 234 FYTLRNIIETLRGENGCPWDKKQTHQTLKRYLIEECYELLEAIDE-------------EDDDHMVEELGDVLLQVLLHAQ 300 (488)
T ss_pred HHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhc-------------cchHhHHHHHHHHHHHHHHHHh
Confidence 455666666666554 5998877777888899999999999863 4677899999999999987774
Q ss_pred HcC----CCHHHHHHHHHHHHhhhCCCccccCCCCC
Q 033069 91 ICG----IDLGKAALRKVELNAIKYPATACTNGSSN 122 (128)
Q Consensus 91 ~lg----IDle~al~~k~~k~~~R~~~~~~~g~~~~ 122 (128)
.-. +++.+++..-.+|..+|+|| +.|..+.
T Consensus 301 IGkdeGyf~I~dVI~~i~~KMIrRHPH--vF~d~qv 334 (488)
T COG3956 301 IGKDEGYFNINDVISGISEKMIRRHPH--VFKDEQV 334 (488)
T ss_pred hcccCCeeeHHHHHHHHHHHHHHhCcc--ccccccc
Confidence 332 79999999999999999999 6666543
No 14
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.17 E-value=3e-06 Score=66.31 Aligned_cols=43 Identities=26% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCCcc
Q 033069 73 HLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPATA 115 (128)
Q Consensus 73 ~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~~~ 115 (128)
.+++||||+||.|+.+|+.+|||+|.||.....+|++||..-+
T Consensus 222 ~~e~e~GdlLf~lv~~ar~~~idpE~aLr~a~~kf~~rf~~~E 264 (277)
T PRK12334 222 DSEDELGALLLALVAVAVAAGVDAEAALRAAVRDFRDRIRAAE 264 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999997633
No 15
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=98.07 E-value=0.00011 Score=49.80 Aligned_cols=83 Identities=17% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHH
Q 033069 13 LDLLRQKMADFAKERDWDKF------HSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLV 86 (128)
Q Consensus 13 l~elq~~i~~~~~~~~w~~~------~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~ 86 (128)
|.+|.+.|.+-.....-..| ..+..+..++.||+.|+..|... ++++.+..|.||+++.++
T Consensus 5 l~~L~~~I~~Rk~~~~~~SYT~~L~~~G~~ki~kKlgEEa~E~i~A~~~-------------~d~~~~i~E~ADLlYHll 71 (105)
T PRK00400 5 LERLAATIEERKGADPEGSYTAKLLDKGLDKILKKVGEEATEVVIAAKD-------------GDREELVYEIADLLYHLL 71 (105)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHH
Confidence 56777776665433322221 12445678999999999998752 368899999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhhhCC
Q 033069 87 RLSDICGIDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 87 ~lA~~lgIDle~al~~k~~k~~~R~~ 112 (128)
.+....||++++++.. +.+|+.
T Consensus 72 VlL~~~gv~~~dV~~e----L~~R~~ 93 (105)
T PRK00400 72 VLLAARGISLEDVLAE----LERREG 93 (105)
T ss_pred HHHHHcCCCHHHHHHH----HHHHcC
Confidence 9999999999998754 555664
No 16
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=98.05 E-value=7.8e-05 Score=48.67 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033069 35 PRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 35 ~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~ 102 (128)
+.....++.||+.|+.-|... ++++.+..|.||+++.++.+....||++++++..
T Consensus 29 ~~ki~kKvgEEa~E~iiAa~~-------------~d~~~~~~E~ADLlYHllVlL~~~gi~~~dV~~e 83 (84)
T TIGR03188 29 LDKILKKVGEEAVEVVIAAKN-------------GDKEELVYEAADLLYHLLVLLAAQGVSLEDVLAE 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 555688999999999998752 3678899999999999999999999999998753
No 17
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.00 E-value=1.2e-05 Score=60.35 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCCc
Q 033069 76 EELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 76 eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~~ 114 (128)
.||||+||.++++|+++|||++.||...+.||..+.|.+
T Consensus 164 ~E~GDlLFalvn~aR~~~idpE~ALr~an~Kf~~~~~~~ 202 (204)
T PRK12333 164 GGVAEALWAVVAWARAEGIDPEIALRERTEKACAQLPDE 202 (204)
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCccc
Confidence 499999999999999999999999999999999998864
No 18
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=97.90 E-value=0.00033 Score=46.37 Aligned_cols=56 Identities=21% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 033069 35 PRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRK 103 (128)
Q Consensus 35 ~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k 103 (128)
....+.++.||++|+.-|-.. ++++.+..|.+|+++.++.+....|+++++++.+-
T Consensus 29 ~~ki~kKvGEEa~E~~iAa~~-------------~d~e~l~~E~ADLlYH~lVlL~~~gv~l~dV~~eL 84 (92)
T COG0140 29 IDKIAKKVGEEAVEVILAAKD-------------EDKEELVSEAADLLYHLLVLLAAQGLSLEDVLREL 84 (92)
T ss_pred HHHHHHHHhHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 556788999999999877652 36788999999999999999999999999987543
No 19
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=97.80 E-value=0.00024 Score=47.44 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCC--
Q 033069 18 QKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGID-- 95 (128)
Q Consensus 18 ~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgID-- 95 (128)
....+|...- ++....|...+..|+.|+-|++++. ++. .|-+||++.++..+.+.||.
T Consensus 4 ~~~a~wS~~T-FGp~~~p~g~lkHl~kE~~E~~~~p---------------~Dl----~EwaDv~~Ll~D~~~RaGis~~ 63 (100)
T PF04447_consen 4 RRHAEWSDRT-FGPGVGPVGPLKHLSKEALEAEAAP---------------GDL----SEWADVQILLWDGARRAGISPE 63 (100)
T ss_pred HHHHHHHHhh-cCCCCCcchHHHHHHHHHHHHHhCC---------------CCH----HHHHHHHHHHHHHHHHcCCCHH
Confidence 3445666443 3322368888999999999997752 122 49999999999999999995
Q ss_pred -HHHHHHHHHHHHhhh-CCC
Q 033069 96 -LGKAALRKVELNAIK-YPA 113 (128)
Q Consensus 96 -le~al~~k~~k~~~R-~~~ 113 (128)
+.+|+..|+++|+.| ||.
T Consensus 64 ~i~~A~~~K~~iN~aR~Wp~ 83 (100)
T PF04447_consen 64 QIIDAMEAKLAINKARQWPD 83 (100)
T ss_pred HHHHHHHHHHHhccccCCCC
Confidence 556888999999999 775
No 20
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=97.73 E-value=0.00049 Score=51.73 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKF------HSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~------~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
.|.+|.+.|.+=.....-..| ..+.....++.||+.|+..|... ++++++..|.||+++.+
T Consensus 115 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~~G~~kI~kKvgEEA~E~iiAak~-------------~d~~~li~E~ADLlYHl 181 (203)
T PRK02759 115 FLSQLEQLIAERKNAPPEGSYTAKLFASGTKRIAQKVGEEAVEVVLAAKN-------------NDKEELINEAADLLYHL 181 (203)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHH
Confidence 467777766654433221111 12445688999999999998752 36889999999999999
Q ss_pred HHHHHHcCCCHHHHHHH
Q 033069 86 VRLSDICGIDLGKAALR 102 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~ 102 (128)
+.+....||++++++.+
T Consensus 182 lVlL~~~gv~l~dV~~e 198 (203)
T PRK02759 182 LVLLADQGLSLSDVIAE 198 (203)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 99999999999998754
No 21
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=96.99 E-value=0.0062 Score=44.18 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHH------------HhhCCC-C------CCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 39 LLALVGEVGELSEIF------------QWKGEV-P------KGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 39 ~l~L~eE~gELaeai------------~~~~~~-~------~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
-..+.-|+.||..++ -|+... . .....+++++...+..||-|++.+++.++..+|++.++.
T Consensus 74 ~~ai~dE~rEL~t~Lggmsng~k~~s~~WK~Wk~~h~e~rn~~f~~ls~eD~le~k~ElID~~HF~l~~~~~LG~t~eeI 153 (172)
T PHA02602 74 DDYIADETRELYTSLGGMSNGEKDASAVWKPWKANHGEARNRLFSDLSPEDQLEIKFELIDQLHFVLNKFIALGMDAEEI 153 (172)
T ss_pred HHHHHHHHHHHHHHhcccccCCccccccchHhhhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 456777888887743 222111 1 112345677888999999999999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 033069 100 ALRKVELNAIKYP 112 (128)
Q Consensus 100 l~~k~~k~~~R~~ 112 (128)
+...+.||.--|.
T Consensus 154 ~~aY~~KN~lNh~ 166 (172)
T PHA02602 154 FKLYYLKNAENFA 166 (172)
T ss_pred HHHHHHhhHHHHH
Confidence 9998888876544
No 22
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=96.55 E-value=0.0053 Score=44.51 Aligned_cols=82 Identities=26% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHHHHHH-hhCCCCCCCCCCcHHHHhHHHHHHHHHHH
Q 033069 13 LDLLRQKMADFAKERDWDKFHS--------PRNLLLALVGEVGELSEIFQ-WKGEVPKGLPDWKEEEKIHLGEELSDVLL 83 (128)
Q Consensus 13 l~elq~~i~~~~~~~~w~~~~~--------~~~~~l~L~eE~gELaeai~-~~~~~~~g~~~~~~~~~~~l~eELgDvL~ 83 (128)
|=++|+.+.+-.....|..... .....++|..|+||+++.++ ++-.... .+.+.+.+-+|+.|++.
T Consensus 5 l~~~Qk~Ld~~i~~~~~~~~~~~~~~~~~~~~~~~~Al~vE~~El~ne~~~fK~Wk~~-----~~~~~~~ileE~vD~lH 79 (167)
T PF08761_consen 5 LFEMQKELDDRINKKWNLDGSKKNGEVADWIKNKILALIVELGELANETRCFKYWKKK-----KPVDKEKILEEYVDILH 79 (167)
T ss_dssp HHHHHHHHHHHHCTTHGGGSBHHHS-HHHHH----HHHHHHHHHHHTTS----SSSST-----T---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHcchHhhcCC-----CCCCHHHHHHHHHHHHH
Confidence 4466777766554443322111 11225899999999999883 2211111 13578899999999999
Q ss_pred HHHHHHHHcCCCHHHH
Q 033069 84 YLVRLSDICGIDLGKA 99 (128)
Q Consensus 84 ~l~~lA~~lgIDle~a 99 (128)
+++.++..+|++....
T Consensus 80 F~lS~~~~~~~~~~~~ 95 (167)
T PF08761_consen 80 FLLSIGLELNYDDEKE 95 (167)
T ss_dssp HHHHHHHHHHCT-GGG
T ss_pred HHHHHHHHcCCchhhh
Confidence 9999999999887763
No 23
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.044 Score=43.16 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCC
Q 033069 34 SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 34 ~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~ 112 (128)
++.-+..++.||+.||.++..+ .++.-|+||+|.+.+.++-.-|+.++++...-.-|-+++++
T Consensus 271 D~aLL~aKI~EEAeELc~a~~k----------------~e~~wEmADl~YfA~~~lv~~gVsl~Dv~~~LnmkhrKvtr 333 (359)
T KOG4311|consen 271 DDALLCAKIREEAEELCRALEK----------------NETPWEMADLLYFAMVLLVKRGVSLEDVLEVLNMKHRKVTR 333 (359)
T ss_pred ChHHHHHHHHHHHHHHHHhhcc----------------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHhhhHHHhHhh
Confidence 4556788999999999998653 23667899999999999999999888877655444444444
No 24
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=90.59 E-value=2.7 Score=27.51 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 75 GEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 75 ~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
.+||||+|=.+..+|..+|++=+.......+|-..|
T Consensus 54 lEeLadllEvi~~ia~a~gfske~l~~~R~~Kk~e~ 89 (95)
T COG4997 54 LEELADLLEVISRIAEARGFSKENLEALRLQKKLEK 89 (95)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999888877666665443
No 25
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=90.53 E-value=1.2 Score=31.68 Aligned_cols=71 Identities=30% Similarity=0.387 Sum_probs=47.1
Q ss_pred HHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHHHHHHH----hhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHH
Q 033069 15 LLRQKMADFA-KERDWDKFHSPRNLLLALVGEVGELSEIFQ----WKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLS 89 (128)
Q Consensus 15 elq~~i~~~~-~~~~w~~~~~~~~~~l~L~eE~gELaeai~----~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 89 (128)
.+|+.+..-. ++++.-.+.-....+++|..|+||||...+ |.. + .|-+...+-+|-.|.|.+++.+.
T Consensus 8 ~lQ~~Ld~~I~~~~nl~~~~l~~~~aLAL~Ve~gELAnetrcFkYW~~---~-----~p~~~~~ilEEY~dglHF~lsig 79 (161)
T COG4508 8 RLQEKLDNLILKKCNLLNFELVQKVALALLVEVGELANETRCFKYWKL---S-----KPIDLAKILEEYSDGLHFLLSIG 79 (161)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh---c-----CCCcHHHHHHHHhhhHHHHHHhH
Confidence 3455555433 334443333344568999999999998765 221 1 13467899999999999998877
Q ss_pred HHcC
Q 033069 90 DICG 93 (128)
Q Consensus 90 ~~lg 93 (128)
-.+.
T Consensus 80 l~~~ 83 (161)
T COG4508 80 LYYQ 83 (161)
T ss_pred HHHH
Confidence 5443
No 26
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.22 E-value=1.9 Score=31.22 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh-CCCcccc
Q 033069 71 KIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIK-YPATACT 117 (128)
Q Consensus 71 ~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R-~~~~~~~ 117 (128)
..-..++|+|+|.+..----.+|||++..+..--.-|..+ ||.+.-+
T Consensus 92 L~gqvdalaDlLYfTYGslvlmGiDp~~iF~~VHrANm~KifpdGk~h 139 (180)
T COG4696 92 LIGQVDALADLLYFTYGSLVLMGIDPDAIFAAVHRANMGKIFPDGKAH 139 (180)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhcCCHHHHHHHHHHhhhhhcCCCCccc
Confidence 3456789999999998888899999999999999999888 8765544
No 27
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=82.11 E-value=3.7 Score=27.01 Aligned_cols=55 Identities=25% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 033069 35 PRNLLLALVGEVGELSEIF-QWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 35 ~~~~~l~L~eE~gELaeai-~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~ 101 (128)
.......-+.|+.+..+.. ... ..++.+++.|++|++++..++..+..++++.+.
T Consensus 31 ~~~~l~eE~gEv~eai~~~~~~~------------~l~eELgDvL~~v~~~a~~~~~~~~~~~~~v~~ 86 (102)
T COG1694 31 LLLYLVEEAGEVAEAIRKEEDLE------------DLKEELGDVLADVLFLANLLDIDLEFALEEVVR 86 (102)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4445556667777777666 331 468899999999999999999999999998875
No 28
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=70.16 E-value=38 Score=24.42 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 033069 34 SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSD 90 (128)
Q Consensus 34 ~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 90 (128)
++...++..+.|+|||+..+..... .|. .+...+..+..+.-+++-.|..+..
T Consensus 89 ~l~~~~l~~~a~~Gela~~a~ea~~--dgr--it~~er~~i~~~a~~ai~~l~ll~~ 141 (162)
T PF06892_consen 89 SLPERVLKATAEVGELAREALEALS--DGR--ITRSERNRIIKEANAAIRSLALLIN 141 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc--CCC--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999998875532 222 3456778888888888887766654
No 29
>PHA02591 hypothetical protein; Provisional
Probab=61.91 E-value=7.3 Score=25.12 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 68 EEEKIHLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 68 ~~~~~~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
+++.-.++.||.+.-++.-.+|..|||+.+.+
T Consensus 45 ~dd~~~vA~eL~eqGlSqeqIA~~LGVsqetV 76 (83)
T PHA02591 45 EDDLISVTHELARKGFTVEKIASLLGVSVRKV 76 (83)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 45677899999999999999999999998764
No 30
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=57.91 E-value=8.3 Score=24.29 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhCCCcccc
Q 033069 85 LVRLSDICGIDLGKAALRKVELNAIKYPATACT 117 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~k~~k~~~R~~~~~~~ 117 (128)
++..|+.+||++...+...+.+-.+|+....++
T Consensus 13 ll~~ar~~giNlS~~~e~~L~~~~~~~~~~~W~ 45 (72)
T PRK13710 13 SYQLLKAADVNISGLVNTAMQNEARRLRAERWK 45 (72)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998888877655443
No 31
>PF07362 CcdA: Post-segregation antitoxin CcdA; InterPro: IPR009956 This entry consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein [].; PDB: 3HPW_C 2H3C_A 2H3A_B 2ADN_B 2ADL_B.
Probab=55.45 E-value=15 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhCCCcccc
Q 033069 85 LVRLSDICGIDLGKAALRKVELNAIKYPATACT 117 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~k~~k~~~R~~~~~~~ 117 (128)
|+.-|+.+||++..++...+.+-.++-....+.
T Consensus 13 Ll~~Ak~lgiNlS~~~e~aL~~~v~~~~~~~W~ 45 (72)
T PF07362_consen 13 LLAEAKALGINLSATLEEALAEEVRREKAERWK 45 (72)
T ss_dssp THHHHHHCT--SHHHHHHHHHHHHHH-SSCCHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHH
Confidence 466799999999999999999998887766655
No 32
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=50.45 E-value=27 Score=25.49 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 78 LSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 78 LgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
..||+|..+ +.+|+||.+.+.+-|.++-.-||.
T Consensus 36 CTDVViRA~---R~~g~DLq~lVheDm~~nf~~Yp~ 68 (164)
T PF06940_consen 36 CTDVVIRAY---RDAGYDLQKLVHEDMKANFSAYPR 68 (164)
T ss_pred cHHHHHHHH---HHcCCCHHHHHHHHHHHCHHhCCc
Confidence 456666654 569999999999999999999994
No 33
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=50.23 E-value=45 Score=18.65 Aligned_cols=29 Identities=31% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhhCC
Q 033069 84 YLVRLSDICGIDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~k~~k~~~R~~ 112 (128)
-|-.+|...||...+.+.+.++.+.++|.
T Consensus 16 ~L~~ls~~t~i~~S~Ll~eAle~~l~ky~ 44 (44)
T PF12651_consen 16 KLKELSEETGIPKSKLLREALEDYLEKYE 44 (44)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhcC
Confidence 35568999999999999999999988874
No 34
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=48.83 E-value=33 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 84 YLVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
..-.||..+|++ ...+......|+.||+.
T Consensus 14 t~~~lA~~yg~~-~~~i~~~~~rN~~rF~e 42 (88)
T PF10543_consen 14 TDEDLAELYGVE-TKTINRNFKRNKDRFIE 42 (88)
T ss_pred EHHHHHHHhCcC-HHHHHHHHHHHHHhCCC
Confidence 456789999999 67888999999999993
No 35
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=47.71 E-value=96 Score=21.78 Aligned_cols=31 Identities=13% Similarity=-0.030 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033069 72 IHLGEELSDVLLYLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 72 ~~l~eELgDvL~~l~~lA~~lgIDle~al~~ 102 (128)
..-..|..+++--+..++..+||++++.+..
T Consensus 48 ~~~~~er~~~l~~i~~~~~~~Git~eeL~~~ 78 (134)
T PRK10328 48 QRELAERQEKINTWLELMKADGINPEELLGN 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhhh
Confidence 3455677788888999999999999999754
No 36
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.32 E-value=1.1e+02 Score=23.01 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033069 28 DWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELN 107 (128)
Q Consensus 28 ~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~ 107 (128)
+|-...-|-+.+..+..|++|+.+.+....- ++..+ =.++.++..+|.|+++++.+..+.=
T Consensus 110 ~~l~T~ap~~ev~E~vreLse~~~E~~~~~l--------t~~vr-----------klVv~~S~~~~~~~dd~~eeave~G 170 (204)
T COG3286 110 GELKTNAPWSEVVELVRELSEVYREARFQPL--------TRQVR-----------KLVVAVSIVYGLDPDDAAEEAVELG 170 (204)
T ss_pred ceeecCCCHHHHHHHHHHHHHHHHHHHhccc--------cchhh-----------hhhhhhhhHhCCCHHHHHHHHHHhh
Confidence 4544444666677777777777776654310 11111 1345677789999999999888876
Q ss_pred hhhCCCc
Q 033069 108 AIKYPAT 114 (128)
Q Consensus 108 ~~R~~~~ 114 (128)
--|+..+
T Consensus 171 ll~e~E~ 177 (204)
T COG3286 171 LLEEGED 177 (204)
T ss_pred hhhccch
Confidence 5555543
No 37
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=45.40 E-value=51 Score=23.58 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhC
Q 033069 76 EELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKY 111 (128)
Q Consensus 76 eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~ 111 (128)
..+-.++-.++.++..+|++.++.+..-++||..-|
T Consensus 125 ~~~~~~~~~f~~l~~~lg~t~e~i~~aY~~KN~~N~ 160 (167)
T PF08761_consen 125 ESYQELFDLFLGLGELLGFTFEDIEKAYIEKNQVNH 160 (167)
T ss_dssp T-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344556666788999999997777666666665543
No 38
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=45.27 E-value=89 Score=20.67 Aligned_cols=86 Identities=10% Similarity=0.161 Sum_probs=59.0
Q ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHH
Q 033069 8 GESVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVR 87 (128)
Q Consensus 8 ~~~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~ 87 (128)
.+.+|..++...+.+|+...+ ..+.+..+..++-..-+.++ .....+-..|+.++--|..
T Consensus 13 n~~lt~~e~~~~l~~Wa~~~~------v~~~~~~f~~~~~~~~~~~~--------------~~~~~vi~~L~~a~~~l~~ 72 (113)
T PF02520_consen 13 NPNLTKAEIEEQLDEWAEKYG------VQDQYNEFKAQVQAQKEEVR--------------KNVTAVISNLSSAFAKLSA 72 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998887 23334444444433333332 2455677778888888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhCCCc
Q 033069 88 LSDICGIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 88 lA~~lgIDle~al~~k~~k~~~R~~~~ 114 (128)
+.+--+....+. ..++..+...||.+
T Consensus 73 I~~n~~lT~~q~-~~~I~~l~~~~~~e 98 (113)
T PF02520_consen 73 ILDNKSLTRQQQ-QEAIDALRKQYPEE 98 (113)
T ss_pred HHcCcccCHHHH-HHHHHHHHHHCCHH
Confidence 888777766654 45777777778865
No 39
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.97 E-value=95 Score=23.54 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERD---WDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDV 81 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~---w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDv 81 (128)
|+..++.-+++.-.... .++.....+-+..|.+..+||.|++-.. ++.+. -+.+++..||+.+
T Consensus 105 Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~----y~~pe---ide~dL~aELdaL 170 (218)
T KOG1655|consen 105 TVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRN----YNTPD---IDEADLDAELDAL 170 (218)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCC---cCHHHHHHHHHHH
Confidence 34444444444444332 2333345666999999999999998643 55433 2345566666654
No 40
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=43.23 E-value=42 Score=22.01 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=23.5
Q ss_pred HHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 78 LSDVLLYL-VRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 78 LgDvL~~l-~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
+||+.++. +.-+..+|+|+...+...++....|
T Consensus 71 iAD~~l~~~~~~~~~~g~~l~p~l~ay~~r~~~r 104 (114)
T cd03195 71 IADTDLALMLNRLVLNGDPVPERLRDYARRQWQR 104 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCC
Confidence 78887764 4567889999766666666666555
No 41
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=38.23 E-value=89 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033069 73 HLGEELSDVLLYLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 73 ~l~eELgDvL~~l~~lA~~lgIDle~al~~ 102 (128)
....|||+||+-+...-+.+..++++.|..
T Consensus 61 ~~s~~LG~vLmqisev~r~i~~~le~~lk~ 90 (215)
T cd07644 61 LTSQSLGEILIQMSETQRKLSADLEVVFQT 90 (215)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999998888888887653
No 42
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.56 E-value=13 Score=27.14 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCCccccCCCCCCCCC
Q 033069 77 ELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPATACTNGSSNKQPT 126 (128)
Q Consensus 77 ELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~~~~~g~~~~~~~~ 126 (128)
-+||||+=-+-+..+||+| ++.-+..++.+|-..+ .-|=+--|||+
T Consensus 109 AVGDVLiDql~~M~RcGFD---aFav~~~~~~~~l~~~-l~~~~~~Yq~~ 154 (167)
T COG3749 109 AVGDVLIDQLPFMLRCGFD---AFAVRNDVAIERLLEG-LGGISVYYQPA 154 (167)
T ss_pred hhhhHHhhhhHHHHHcCCc---eeeecCcccHHHHhhc-ccCcceeecCC
Confidence 4799999999999999999 5666666666665554 34444555554
No 43
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.25 E-value=1.7e+02 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 033069 41 ALVGEVGELSEIFQWK 56 (128)
Q Consensus 41 ~L~eE~gELaeai~~~ 56 (128)
+++.|+||+.+-+...
T Consensus 122 ~~~gE~~EaldDL~~i 137 (186)
T COG3079 122 KLTGEAGEALDDLANI 137 (186)
T ss_pred hhcccHHHHHHHHHHH
Confidence 4555555555554433
No 44
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=36.04 E-value=1.5e+02 Score=20.56 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHhc----------CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHH---hHHHHHH
Q 033069 12 SLDLLRQKMADFAKER----------DWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEK---IHLGEEL 78 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~----------~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~---~~l~eEL 78 (128)
++.|+|..+.+.+++- --..+..+-.+...|+.+..+|++.-+..-. -. .+++.. ..--.+|
T Consensus 1 SFvdyQt~mv~~ak~ia~~a~emv~ks~~~p~eL~~la~~lt~~y~~La~~~~~aaa---t~--~~~ev~~~i~~~vq~L 75 (125)
T PF08913_consen 1 SFVDYQTRMVEAAKEIARTAQEMVTKSRTNPEELGTLANDLTHDYSQLAQDAKGAAA---TT--PSAEVQNRIKSAVQDL 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHC---CS--SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CCHHHHHHHHHHHHHH
Confidence 3567777776666652 1112224556788999999999987654311 01 123333 3345688
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Q 033069 79 SDVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 79 gDvL~~l~~lA~~lgIDle~al~ 101 (128)
|+..+-|+.-|..+-++|++...
T Consensus 76 G~sc~~Lv~aag~~~~~P~d~~~ 98 (125)
T PF08913_consen 76 GMSCIELVQAAGAVQSNPSDPYA 98 (125)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHhCcCCCCCCchhH
Confidence 99999999999998888877753
No 45
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=34.69 E-value=69 Score=17.56 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 85 LVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
++.-|...|||+..=+..-+++... ++.
T Consensus 2 lieTcK~ngv~P~~yL~~vL~~i~~-~~~ 29 (39)
T PF13817_consen 2 LIETCKLNGVNPYAYLTDVLERIPN-HPA 29 (39)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcc-CCH
Confidence 5778999999999999888888766 443
No 46
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=34.50 E-value=36 Score=19.78 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAA 100 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al 100 (128)
..+..+|..+|||+++.+
T Consensus 42 ~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 42 STLKKIAEALGVSLDELF 59 (64)
T ss_dssp HHHHHHHHHHTS-HHHHC
T ss_pred HHHHHHHHHhCCCHHHHh
Confidence 455889999999998765
No 47
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=34.36 E-value=81 Score=20.35 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 033069 73 HLGEELSDVLLYLVRLSDICGIDLGKAALRKVEL 106 (128)
Q Consensus 73 ~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k 106 (128)
.|-+++=|.|--|..||...||.+++...-.+..
T Consensus 45 ~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 45 QIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456788899999999999999999987766543
No 48
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=31.66 E-value=53 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 79 SDVLLYLVRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 79 gDvL~~l~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
.||+--|..||..|+++.++.+.+-+....++
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~ 40 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNM 40 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 36778889999999999999888777766665
No 49
>PHA01083 hypothetical protein
Probab=30.95 E-value=48 Score=23.85 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 033069 85 LVRLSDICGIDLGKAALRKV 104 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~k~ 104 (128)
++.||..+|+|+++++..-.
T Consensus 49 A~~LAe~aGiDp~eall~i~ 68 (149)
T PHA01083 49 AIFLAESAGIDPEIALLGCH 68 (149)
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 46788888999888776544
No 50
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.91 E-value=91 Score=22.50 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 033069 73 HLGEELS--DVLLYLVRLSDICGIDLGKAALRKVE 105 (128)
Q Consensus 73 ~l~eELg--DvL~~l~~lA~~lgIDle~al~~k~~ 105 (128)
.+.++|+ +.-..++++|+..|||+...+.+--+
T Consensus 117 ~~qe~l~lvtf~~aaLivake~Gidis~~i~ev~e 151 (157)
T COG3612 117 SLQENLGLVTFQTAALIVAKEFGIDISGFIEEVEE 151 (157)
T ss_pred HHHHHhcceehHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4566666 55567789999999999988876544
No 51
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=29.31 E-value=88 Score=18.57 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 033069 81 VLLYLVRLSDICGIDLGKAALRK 103 (128)
Q Consensus 81 vL~~l~~lA~~lgIDle~al~~k 103 (128)
+.+.+-.+|+.+|++..+|+..-
T Consensus 4 ~v~~Ie~~A~~~~~s~~ea~~~~ 26 (62)
T PF12668_consen 4 VVFCIEEFAKKLNISGEEAYNYF 26 (62)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHH
Confidence 34566779999999999998643
No 52
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=28.70 E-value=37 Score=19.62 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAA 100 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al 100 (128)
-.+..||..+|+++++.+
T Consensus 41 ~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 41 DTLEKIAKALNCSPEELF 58 (63)
T ss_dssp HHHHHHHHHHT--HHHCT
T ss_pred HHHHHHHHHcCCCHHHHh
Confidence 456788999999988764
No 53
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=28.01 E-value=1.1e+02 Score=20.16 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 72 IHLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 72 ~~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
.++.+.+.+++ +-.+|+++|+|.++.
T Consensus 67 ~eL~~~I~~tl--vhEiah~fG~~~e~l 92 (97)
T PF06262_consen 67 EELAELIRDTL--VHEIAHHFGISDEDL 92 (97)
T ss_dssp HHHHHHHHHHH--HHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHH--HHHHHHHcCCCHHHh
Confidence 34666666654 457999999998864
No 54
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=27.58 E-value=1.5e+02 Score=21.70 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 77 ELSDVLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 77 ELgDvL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
=-||+|...+..+-..|.++++|+....+...
T Consensus 205 GaGD~f~a~l~a~l~~g~~~~~A~~~A~~~~~ 236 (242)
T cd01169 205 GTGCTLSSAIAANLAKGLSLEEAVREAKEYVT 236 (242)
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999988777654
No 55
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=27.56 E-value=1.1e+02 Score=21.86 Aligned_cols=30 Identities=27% Similarity=0.186 Sum_probs=23.0
Q ss_pred hHHHHHHH---HHHHHHHHHHHHcCCCHHHHHH
Q 033069 72 IHLGEELS---DVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 72 ~~l~eELg---DvL~~l~~lA~~lgIDle~al~ 101 (128)
..+.+++| |.=..++.+|..+|||+++.+.
T Consensus 110 n~~q~~~~~~l~~e~aall~ake~Gvdv~~~~~ 142 (144)
T PF09999_consen 110 NELQEELGGLLDPEAAALLYAKEKGVDVSDFAD 142 (144)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHhCCCHHHHhh
Confidence 34677777 5556778899999999988764
No 56
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=26.86 E-value=1.5e+02 Score=19.25 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH
Q 033069 76 EELSDVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 76 eELgDvL~~l~~lA~~lgIDle~al~ 101 (128)
..+.+.+-.++.+|-+.|+++++++.
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~ 62 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIID 62 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 55778888999999999999998764
No 57
>PF13943 WPP: WPP domain
Probab=26.39 E-value=1.8e+02 Score=19.41 Aligned_cols=44 Identities=9% Similarity=-0.132 Sum_probs=23.5
Q ss_pred cHHHHhHHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHHhhh
Q 033069 67 KEEEKIHLGEELSDVLLYLVRL--SDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 67 ~~~~~~~l~eELgDvL~~l~~l--A~~lgIDle~al~~k~~k~~~R 110 (128)
..++-+..+..+-|..|....- ...=+=|--++++-.-.+..+|
T Consensus 37 ~~eeA~~~Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~Skl 82 (99)
T PF13943_consen 37 PKEEAEEAAKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEISKL 82 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHH
Confidence 3455566777777777766665 1112235555555544444444
No 58
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=26.23 E-value=90 Score=18.64 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCCHHH
Q 033069 79 SDVLLYLVRLSDICGIDLGK 98 (128)
Q Consensus 79 gDvL~~l~~lA~~lgIDle~ 98 (128)
.-+-.|+-.+|+.+|+|.++
T Consensus 42 ~y~rg~lr~Ya~~Lgld~~~ 61 (62)
T PF13413_consen 42 VYARGYLRKYARFLGLDPDE 61 (62)
T ss_dssp HHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHhCcCccc
Confidence 45677899999999999876
No 59
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=26.11 E-value=1.7e+02 Score=18.28 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=17.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 86 VRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
-.++..+|+++..|+..-+.+....
T Consensus 17 ~~il~~~Glt~s~ai~~fl~qiv~~ 41 (83)
T PF04221_consen 17 EAILEELGLTLSDAINMFLKQIVRE 41 (83)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3467788999999988888876654
No 60
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=25.68 E-value=68 Score=20.97 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHcCCCHHHHHHHHHHH
Q 033069 87 RLSDICGIDLGKAALRKVEL 106 (128)
Q Consensus 87 ~lA~~lgIDle~al~~k~~k 106 (128)
.+|..+|||..+++..-...
T Consensus 27 ~lce~~giD~~~V~~~~~~d 46 (96)
T PF00984_consen 27 RLCEKLGIDVYEVIEAANTD 46 (96)
T ss_dssp HHHHHHTSBHHHHHHHHHTS
T ss_pred HHHHHcCCCHHHHHHHHccC
Confidence 47999999999998765554
No 61
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=25.63 E-value=1.2e+02 Score=19.76 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhh
Q 033069 78 LSDVLLYL-VRLSDICGIDLGKAALRKVELNAI 109 (128)
Q Consensus 78 LgDvL~~l-~~lA~~lgIDle~al~~k~~k~~~ 109 (128)
++|+.++. +..+..+++|+.-.+..-+++...
T Consensus 72 ~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv~~ 104 (114)
T cd03194 72 IADAFFAPVVTRFRTYGLPLSPAAQAYVDALLA 104 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 78888763 445667888865455444444443
No 62
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=25.50 E-value=1.4e+02 Score=18.89 Aligned_cols=25 Identities=8% Similarity=-0.064 Sum_probs=20.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 86 VRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
..++..+|+++.+|+..-+.+..+.
T Consensus 18 ~~i~~~lGl~~s~ai~~fl~qvv~~ 42 (83)
T TIGR02384 18 YAVFEELGLTPSTAIRMFLKQVIRE 42 (83)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3567889999999999888887655
No 63
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=25.46 E-value=1.9e+02 Score=18.40 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 73 HLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 73 ~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
....|..+++--+..++..+||++++.
T Consensus 17 ~~~~e~~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 17 RRKQEREEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp HHHHCCHHHHHHHHHHHHHTT--HHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 344566778888889999999999998
No 64
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=25.35 E-value=64 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033069 74 LGEELSDVLLYLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 74 l~eELgDvL~~l~~lA~~lgIDle~al~~ 102 (128)
...||||+|+-+...-+.+...+++.+..
T Consensus 62 ~SkeLG~~L~qi~ev~r~i~~~le~~lK~ 90 (226)
T cd07645 62 VSKELGHVLMEISDVHKKLNDSLEENFKK 90 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999998888888777776543
No 65
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=24.62 E-value=1.9e+02 Score=18.18 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHH
Q 033069 35 PRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDV 81 (128)
Q Consensus 35 ~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDv 81 (128)
|...-..--+++-+|-+-|.++. .+++..-+.+.+|||.+
T Consensus 30 ~~~f~~~~yedl~diy~~V~~K~-------~fS~sEm~aI~~ELG~L 69 (71)
T PF06569_consen 30 PEDFSEEKYEDLKDIYEMVMSKD-------SFSPSEMQAIAEELGQL 69 (71)
T ss_pred HHhCChhhHHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHhh
Confidence 33333333456677777776542 25677888999999964
No 66
>PHA01976 helix-turn-helix protein
Probab=24.52 E-value=82 Score=18.34 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCHHHHH
Q 033069 84 YLVRLSDICGIDLGKAA 100 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al 100 (128)
.+..+|+.|||+++..+
T Consensus 46 ~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 46 TLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHHHHHHHCcCHHHHh
Confidence 46778889999988654
No 67
>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated
Probab=24.48 E-value=2.1e+02 Score=19.71 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhcCCC
Q 033069 1 MTTGVGDGESVSLDLLRQKMADFAKERDWD 30 (128)
Q Consensus 1 ~~~~~~~~~~m~l~elq~~i~~~~~~~~w~ 30 (128)
|++.+..+.+-++..+.+.+..+++..||-
T Consensus 1 ~~~~~~~~~~~~~e~m~~f~ekya~~~G~~ 30 (116)
T CHL00165 1 MKLNNEKSKPESLEAMRKFAETYAKRTNTF 30 (116)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHhCCe
Confidence 445566677788999999999999999994
No 68
>PF08689 Med5: Mediator complex subunit Med5; InterPro: IPR014801 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the Med5 subunit of the Mediator complex in fungi. Deletion of the MED5 gene leads to increased transcription of nuclear genes encoding components of the oxidative phosphorylation machinery, and decreased transcription of mitochondrial genes encoding components of the same machinery []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.07 E-value=4.4e+02 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 033069 68 EEEKIHLGEELSDVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 68 ~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~ 101 (128)
+++-..+-+|+|-+|..++.+..+|++|+.+...
T Consensus 537 ~~e~q~~y~~Fg~ilL~i~~~~~~y~l~~~d~~~ 570 (989)
T PF08689_consen 537 QGEYQPVYSEFGSILLLIIAIVYRYNLSLSDLAL 570 (989)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHcCCcHHHHhh
Confidence 4456789999999999999999999999998843
No 69
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=23.30 E-value=44 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHH
Q 033069 78 LSDVLLYLVRLSDICGIDLGK 98 (128)
Q Consensus 78 LgDvL~~l~~lA~~lgIDle~ 98 (128)
-.|.+.|++.++.++|+|++.
T Consensus 206 ~eD~lYYlL~v~~Ql~ld~e~ 226 (253)
T PF12864_consen 206 AEDFLYYLLFVWEQLGLDPEK 226 (253)
T ss_dssp HHHHHHHHHHHHHHTT--TTT
T ss_pred hHHHHHHHHHHHHHcCCCccc
Confidence 679999999999999998753
No 70
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=22.97 E-value=86 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHH
Q 033069 74 LGEELSDVLLYLVRLSDICGIDLGK 98 (128)
Q Consensus 74 l~eELgDvL~~l~~lA~~lgIDle~ 98 (128)
-.+||+|+.......|+.+||++-=
T Consensus 174 taeeladIa~~sa~~a~~fgi~PkV 198 (327)
T COG0280 174 TAEELADIAENAAETARRFGIEPKV 198 (327)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCce
Confidence 3589999999999999999987643
No 71
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.59 E-value=1.8e+02 Score=21.36 Aligned_cols=39 Identities=31% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 033069 70 EKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAI 109 (128)
Q Consensus 70 ~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~ 109 (128)
.-.+++.||--+-..|+.||. -|-|+.+-+..||.+..+
T Consensus 50 ~L~~ae~~Ln~vQ~~L~~l~d-~~~d~~~~~l~km~kA~r 88 (169)
T PF09869_consen 50 ELKDAEKELNSVQSILFDLCD-EGEDYRKKWLDKMKKASR 88 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhc
Confidence 346789999999999999999 999999999999988654
No 72
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=22.45 E-value=2.2e+02 Score=19.32 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 033069 14 DLLRQKMADFAKERDWDKFHSPRNLLLALVGEV 46 (128)
Q Consensus 14 ~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~ 46 (128)
.++...+..++..++|+-.......+..++++.
T Consensus 49 ~~I~~~a~~~A~~~gWd~~~~~~~~l~~~se~~ 81 (109)
T PF09691_consen 49 QEIIRAAVIFAQQRGWDTSNYNYQQLSQLSEES 81 (109)
T ss_dssp HHHHHHHHHHHHHTT--CGG--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHH
Confidence 468889999999999975321223344444443
No 73
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=22.05 E-value=2.2e+02 Score=21.17 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 77 ELSDVLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 77 ELgDvL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
=-||+|...+..+-..|.|+++|+....+...
T Consensus 206 GaGDaf~a~~~~~l~~g~~l~ea~~~A~~~~~ 237 (253)
T PRK12413 206 GAGCTFASSIASQLVKGKSPLEAVKNSKDFVY 237 (253)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45999999998888899999999987765443
No 74
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.71 E-value=4e+02 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhcCCCC
Q 033069 2 TTGVGDGESVSLDLLRQKMADFAKERDWDK 31 (128)
Q Consensus 2 ~~~~~~~~~m~l~elq~~i~~~~~~~~w~~ 31 (128)
||++++..+.-+..+-++++...+.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~g~rl~~~R~~~gltq 44 (309)
T PRK08154 15 MTGAAAEEAPFLAALGERVRTLRARRGMSR 44 (309)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHcCCCH
Confidence 677777887778889999999999999853
No 75
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=21.27 E-value=2.2e+02 Score=21.90 Aligned_cols=32 Identities=19% Similarity=-0.023 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 77 ELSDVLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 77 ELgDvL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
=-||+|...+..+-..|.++++|+....+...
T Consensus 230 GaGD~faa~~~a~l~~g~~l~~Av~~A~~~v~ 261 (281)
T PRK08176 230 GTGDLFCAELVSGLLKGKALTDAAHRAGLRVL 261 (281)
T ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34999999999888899999999998876654
No 76
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.16 E-value=1.3e+02 Score=25.69 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 033069 74 LGEELSDVLLYLVRLSDICG-IDLGKAALRKVELN 107 (128)
Q Consensus 74 l~eELgDvL~~l~~lA~~lg-IDle~al~~k~~k~ 107 (128)
+..+=-|+++-.+.||+++| ++|+.|+.+.+...
T Consensus 110 l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~i 144 (620)
T KOG4350|consen 110 LAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEI 144 (620)
T ss_pred cccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44445588999999999999 59999998877654
No 77
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=21.11 E-value=2.4e+02 Score=21.15 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 033069 74 LGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAI 109 (128)
Q Consensus 74 l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~ 109 (128)
--.--||+|-.++.-+-..|.++++|+....+...+
T Consensus 195 ~~~GTGd~fss~laa~l~~g~~l~~Av~~A~~~v~~ 230 (246)
T PF08543_consen 195 SFHGTGDLFSSALAAFLAKGYSLEEAVEKAKNFVRR 230 (246)
T ss_dssp GCTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346689999999998889999999999988776543
No 78
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=20.97 E-value=2e+02 Score=18.30 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=19.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 87 RLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 87 ~lA~~lgIDle~al~~k~~k~~~R 110 (128)
.++..+|+++.+|+..-+.+....
T Consensus 18 ~vl~~lGls~S~Ai~~fl~qi~~~ 41 (80)
T PRK11235 18 AVLEKLGVTPSEALRLLLQYVAEN 41 (80)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHh
Confidence 467889999999999988887654
No 79
>PRK12412 pyridoxal kinase; Reviewed
Probab=20.92 E-value=2.1e+02 Score=21.68 Aligned_cols=34 Identities=9% Similarity=-0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 77 ELSDVLLYLVRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 77 ELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
=-||+|...+..+-..|.++++|+....+....-
T Consensus 210 GaGD~f~aa~aa~l~~g~~l~eA~~~A~~~~~~~ 243 (268)
T PRK12412 210 GAGCTYSAAITAELAKGKPVKEAVKTAKEFITAA 243 (268)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5599999999999889999999998887666543
No 80
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=20.79 E-value=2.4e+02 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 033069 78 LSDVLLYLVRLSDICGIDLGKAALRKVELNAI 109 (128)
Q Consensus 78 LgDvL~~l~~lA~~lgIDle~al~~k~~k~~~ 109 (128)
-||+|...+..+-..|.++++|+....+...+
T Consensus 216 aGD~f~a~~~~~l~~g~~~~~a~~~A~~~~~~ 247 (254)
T cd01173 216 TGDLFAALLLARLLKGKSLAEALEKALNFVHE 247 (254)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 49999999999999999999999988776543
No 81
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=20.30 E-value=1.3e+02 Score=16.90 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhhhCC
Q 033069 94 IDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 94 IDle~al~~k~~k~~~R~~ 112 (128)
-||++++..-..++...|.
T Consensus 21 PDLdel~r~l~~kl~~~fg 39 (42)
T PF12221_consen 21 PDLDELFRKLQDKLGGLFG 39 (42)
T ss_pred CCHHHHHHHHHHHHhcccC
Confidence 5888888888888776665
Done!