Query 033069
Match_columns 128
No_of_seqs 119 out of 1047
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obc_A Pyrophosphatase; dimeri 100.0 1.8E-31 6.2E-36 183.1 8.5 105 12-118 12-117 (118)
2 2a3q_A Hypothetical protein; M 100.0 4.9E-29 1.7E-33 181.0 12.4 118 8-125 26-143 (170)
3 2gta_A Hypothetical protein YP 99.9 4.8E-27 1.6E-31 161.6 10.6 108 10-121 3-110 (119)
4 2oie_A RS21-C6; helix, hydrola 99.9 1.4E-26 4.9E-31 157.1 11.7 103 6-108 9-111 (111)
5 2q73_A MAZG, hypothetical prot 99.9 9.9E-26 3.4E-30 150.6 10.4 95 11-114 1-95 (100)
6 2q5z_A MAZG, hypothetical prot 99.9 2.5E-25 8.5E-30 152.0 10.2 99 6-113 16-114 (114)
7 2yxh_A MAZG-related protein; T 99.8 1.5E-18 5.2E-23 118.6 9.6 89 13-114 2-94 (116)
8 1vmg_A Hypothetical protein SS 99.8 1.8E-18 6E-23 114.6 7.1 81 10-105 14-94 (95)
9 3cra_A Protein MAZG; tandem-re 99.5 2.3E-13 8E-18 104.3 10.4 94 12-120 5-105 (265)
10 3cra_A Protein MAZG; tandem-re 99.4 9.5E-13 3.3E-17 100.9 11.1 70 34-114 163-232 (265)
11 2yay_A Dutpase; hydrolase, lei 98.9 4E-10 1.4E-14 86.6 2.7 82 11-97 18-99 (271)
12 2yf4_A MAZG-like nucleoside tr 98.4 4.5E-06 1.5E-10 59.2 10.1 96 15-111 15-119 (154)
13 1y6x_A Phosphoribosyl-ATP pyro 98.3 1.4E-05 4.7E-10 52.2 9.9 82 7-101 3-91 (93)
14 2a7w_A PRA-PH, phosphoribosyl- 98.2 2.1E-05 7.3E-10 53.2 9.6 84 12-112 5-94 (116)
15 1yxb_A PRA-PH, phosphoribosyl- 98.1 5.3E-05 1.8E-09 49.8 9.8 78 12-102 5-89 (98)
16 1yvw_A PRA-PH, phosphoribosyl- 98.0 0.00012 4.2E-09 49.4 10.9 83 12-107 4-92 (115)
17 2rfp_A Putative NTP pyrophosph 97.8 0.0004 1.4E-08 49.8 11.3 98 17-114 8-135 (171)
18 3nl9_A Putative NTP pyrophosph 97.6 0.00059 2E-08 49.0 9.3 43 69-111 89-131 (171)
19 1w2y_A Deoxyuridine 5'-triphos 97.0 0.0037 1.3E-07 46.6 8.2 77 12-92 9-89 (229)
20 1ogl_A Dutpase, deoxyuridine t 96.5 0.0041 1.4E-07 47.8 5.7 92 2-98 1-98 (283)
21 2p06_A Hypothetical protein AF 95.8 0.0087 3E-07 38.3 3.6 47 34-93 57-103 (114)
22 2adl_A CCDA; ribbon-helix-heli 60.1 14 0.00048 22.2 4.0 34 85-118 13-46 (72)
23 2r1j_L Repressor protein C2; p 57.5 22 0.00074 19.4 5.3 17 85-101 50-66 (68)
24 2yay_A Dutpase; hydrolase, lei 55.6 16 0.00054 27.7 4.5 39 76-114 155-193 (271)
25 1adr_A P22 C2 repressor; trans 54.7 26 0.0009 19.6 5.5 17 85-101 50-66 (76)
26 3e11_A Predicted zincin-like m 48.6 23 0.00079 23.1 4.0 27 71-99 83-109 (114)
27 3s8q_A R-M controller protein; 42.2 43 0.0015 19.2 4.2 25 83-107 54-78 (82)
28 2wus_R RODZ, putative uncharac 39.5 59 0.002 20.6 4.8 28 81-108 54-81 (112)
29 2k9i_A Plasmid PRN1, complete 37.8 48 0.0016 17.7 4.6 31 82-112 21-51 (55)
30 1ogl_A Dutpase, deoxyuridine t 37.8 30 0.001 26.4 3.5 34 81-114 175-208 (283)
31 3g5g_A Regulatory protein; tra 37.7 51 0.0018 20.2 4.2 24 84-107 72-95 (99)
32 3f6w_A XRE-family like protein 31.8 49 0.0017 18.9 3.3 21 84-104 58-78 (83)
33 3rmi_A Chorismate mutase prote 30.6 1.1E+02 0.0037 19.7 6.2 48 80-128 61-114 (114)
34 4e2i_2 DNA polymerase alpha su 30.0 24 0.00083 21.7 1.6 31 80-110 22-52 (78)
35 3qq6_A HTH-type transcriptiona 29.7 52 0.0018 19.0 3.1 18 84-101 55-72 (78)
36 2b5a_A C.BCLI; helix-turn-heli 28.9 63 0.0022 17.9 3.4 20 84-103 54-73 (77)
37 2k9q_A Uncharacterized protein 28.7 70 0.0024 18.1 3.5 19 84-102 46-64 (77)
38 2ofy_A Putative XRE-family tra 28.6 53 0.0018 19.0 3.0 18 83-100 58-75 (86)
39 1us7_B HSP90 CO-chaperone CDC3 27.3 39 0.0013 25.5 2.6 30 79-108 100-129 (265)
40 1r69_A Repressor protein CI; g 24.6 62 0.0021 17.5 2.7 18 85-102 45-62 (69)
41 3b7h_A Prophage LP1 protein 11 24.1 54 0.0018 18.3 2.4 17 84-100 52-68 (78)
42 2keb_A DNA polymerase subunit 23.9 1.3E+02 0.0045 19.3 4.3 29 80-108 45-73 (101)
43 1zug_A Phage 434 CRO protein; 23.0 67 0.0023 17.5 2.6 17 85-101 47-63 (71)
44 3f52_A CLP gene regulator (CLG 22.1 1.3E+02 0.0044 18.4 4.1 24 83-106 71-94 (117)
45 3ivp_A Putative transposon-rel 21.8 1.5E+02 0.0052 18.4 7.1 22 9-30 6-27 (126)
46 2vkl_A RV0948C/MT0975; helical 21.6 1.4E+02 0.0047 18.3 4.1 42 6-52 7-48 (90)
47 3fym_A Putative uncharacterize 21.4 99 0.0034 19.9 3.5 20 83-102 52-71 (130)
48 2xi8_A Putative transcription 21.0 49 0.0017 17.7 1.7 17 84-100 45-61 (66)
49 1yz7_A Probable translation in 20.1 98 0.0034 21.9 3.5 27 87-113 22-48 (188)
No 1
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=99.97 E-value=1.8e-31 Score=183.15 Aligned_cols=105 Identities=36% Similarity=0.591 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQW-KGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSD 90 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~-~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 90 (128)
.+.++++++.+|+++|+|++|++|.+++++|++|+|||+++|+| .....+. ...++.+++|.+|||||||||+.||+
T Consensus 12 ~~~~~~~~~~~F~~eR~W~qfh~Pknlal~L~~EaGELae~fqwg~~~~~~~--~~~~~~~~~l~eELADVL~Yl~~LA~ 89 (118)
T 3obc_A 12 HMEELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEF--EVLERRKGEVEEEIADVLIYLLFLCD 89 (118)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHHHHTTTCCSHHHHH--HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998 4311000 01124578999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhhCCCccccC
Q 033069 91 ICGIDLGKAALRKVELNAIKYPATACTN 118 (128)
Q Consensus 91 ~lgIDle~al~~k~~k~~~R~~~~~~~g 118 (128)
.+||||++++..||+||.+|||.+.++.
T Consensus 90 ~lgIDLeea~~~Km~Kn~~RYP~~~~~~ 117 (118)
T 3obc_A 90 VAEINPIEAVKRKMEKNERKYPKNRVHE 117 (118)
T ss_dssp HHTCCHHHHHHHHHHHHHHHSCC-----
T ss_pred HHCcCHHHHHHHHHHHHHHhCCchhccc
Confidence 9999999999999999999999987753
No 2
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=99.96 E-value=4.9e-29 Score=181.01 Aligned_cols=118 Identities=46% Similarity=0.822 Sum_probs=97.3
Q ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHH
Q 033069 8 GESVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVR 87 (128)
Q Consensus 8 ~~~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~ 87 (128)
.+.|++.+||+++.+|+..++|+++++|..++++|.+|+|||+++|+|......|....++.++++|++|||||||||+.
T Consensus 26 palm~~~eLqk~~~~~~~~~dW~~~~~p~~l~~~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~eELGDVL~~lv~ 105 (170)
T 2a3q_A 26 SPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVA 105 (170)
T ss_dssp CSCSCHHHHHHHHHHHHHTSCHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999888999999999999999999999864333333333456788999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhCCCccccCCCCCCCC
Q 033069 88 LSDICGIDLGKAALRKVELNAIKYPATACTNGSSNKQP 125 (128)
Q Consensus 88 lA~~lgIDle~al~~k~~k~~~R~~~~~~~g~~~~~~~ 125 (128)
||+++|||+++|+..+++||++|||+++++|+++++..
T Consensus 106 LA~~lgIDleeAl~~k~~K~~~Ryp~~~~~g~~~k~~e 143 (170)
T 2a3q_A 106 LAARCHVDLPQAVISKMDTNRQRYPVHLSRGSACKYTD 143 (170)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHSCCCCC---------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccHhhcccccchhh
Confidence 99999999999999999999999999999999987653
No 3
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=99.94 E-value=4.8e-27 Score=161.56 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHH
Q 033069 10 SVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLS 89 (128)
Q Consensus 10 ~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 89 (128)
.|+++++|+++.+|+.+++|++++ |..++.+|.+|+|||+++++|........ ..+.++.+++|||||||||+.||
T Consensus 3 ~m~l~elq~~v~~~~~~r~w~~~~-~~~~~~kL~EE~gEl~eai~~~~~~~~~~---~~~~~~~l~eELGDvLf~lv~lA 78 (119)
T 2gta_A 3 DKTMKDIQAEVDRYIGQFKEGYFS-PLAMMARLTEELGELAREVNHRYGEKPKK---ATEDDKSMEEEIGDVLFVLVCLA 78 (119)
T ss_dssp CCBHHHHHHHHHHHHTTSSSCSCC-HHHHHHHHHHHHHHHHHHHHHHTSSSCCC---SSCSCSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCccCC-HHHHHHHHHHHHHHHHHHHHHhccccccc---ccchHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999875 99999999999999999999853211111 01224789999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhhhCCCccccCCCC
Q 033069 90 DICGIDLGKAALRKVELNAIKYPATACTNGSS 121 (128)
Q Consensus 90 ~~lgIDle~al~~k~~k~~~R~~~~~~~g~~~ 121 (128)
+.+|||+++|+..+++||.+|||+++.+++..
T Consensus 79 ~~l~idle~al~~~~~K~~~R~p~~~~~~~~~ 110 (119)
T 2gta_A 79 NSLDISLEEAHDRVMHKFNTRDKDRWTRKEEG 110 (119)
T ss_dssp HTTTCCHHHHHHHHHHHSCC------------
T ss_pred HHHCcCHHHHHHHHHHHHHHhCCcccccccch
Confidence 99999999999999999999999988887654
No 4
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=99.94 E-value=1.4e-26 Score=157.06 Aligned_cols=103 Identities=50% Similarity=0.877 Sum_probs=86.3
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 6 GDGESVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 6 ~~~~~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
+..+.|++.++|+++.+|+..++|+++++|..++++|.+|+|||+++++|.....+|....++++++++++|||||||||
T Consensus 9 ~~p~~m~~~~lq~~~~~~~~~~dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~l 88 (111)
T 2oie_A 9 RFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYL 88 (111)
T ss_dssp CCCSCSCHHHHHHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHH
Confidence 34447999999999999999999999999999999999999999999998654333322223567889999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 033069 86 VRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~ 108 (128)
+.||+++|||+++|+..|++||.
T Consensus 89 ~~lA~~lgiDle~al~~k~~Kn~ 111 (111)
T 2oie_A 89 VALAARCHVDLPQAVISKMDTNR 111 (111)
T ss_dssp HHHHHHTTCCHHHHHHTTC----
T ss_pred HHHHHHHCcCHHHHHHHHHHhhC
Confidence 99999999999999999999984
No 5
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=99.93 E-value=9.9e-26 Score=150.64 Aligned_cols=95 Identities=32% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 033069 11 VSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSD 90 (128)
Q Consensus 11 m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 90 (128)
|+++++|+++.+|+ |+++ +|..++++|.+|+|||++++++..... ...++.++.+++|||||||||+.||+
T Consensus 1 M~l~elQ~~v~~~~----~~~~-~~~~~~~kL~eE~gEl~e~~~~~~~~~----~~~~~~~~~i~eELgDvL~~l~~lA~ 71 (100)
T 2q73_A 1 MKLSELQSHIKEFD----YAPE-QSEHYFFKLIEEVGELSESIRKGKSGQ----PTLDELKGSVAEELYDVLYYVCALAN 71 (100)
T ss_dssp CCHHHHHHHHHHHC----CCGG-GHHHHHHHHHHHHHHHHHHHHTTCCSC----CCGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh----hccC-ChHHHHHHHHHHHHHHHHHHHhhcccc----cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999995 7765 689999999999999999998753211 11234568899999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhhCCCc
Q 033069 91 ICGIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 91 ~lgIDle~al~~k~~k~~~R~~~~ 114 (128)
.+|||+++|+..||++|.+|||+-
T Consensus 72 ~lgiDle~al~~k~~~n~~kyp~~ 95 (100)
T 2q73_A 72 IHGVNLEKTHELKEVLNKVKYNRH 95 (100)
T ss_dssp HTTCCHHHHHHHHHHHHTC-----
T ss_pred HHCcCHHHHHHHHHHHhcccCCCc
Confidence 999999999999999999999974
No 6
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=99.92 E-value=2.5e-25 Score=151.95 Aligned_cols=99 Identities=31% Similarity=0.421 Sum_probs=80.2
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 6 GDGESVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 6 ~~~~~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
...+.|++.++|+++.+|+..++| +..++++|.+|+|||+++++|...... ..+.+++.+++|||||||||
T Consensus 16 ~~~~~m~l~elq~~i~~~~~~~~~-----~~~~~~kL~eE~gEl~e~i~~~~~~~~----~~~~~~~~l~eELgDvL~~l 86 (114)
T 2q5z_A 16 PRGSHMKLSELQSHIKEFDYAPEQ-----SEHYFFKLIEEVGELSESIRKGKSGQP----TLDELKGSVAEELYDVLYYV 86 (114)
T ss_dssp ----CCBHHHHHHHHHHHSCCGGG-----HHHHHHHHHHHHHHHHHHHHTTCCSCC----CGGGCTTCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHHHHhhccccc----cccchHHHHHHHHHHHHHHH
Confidence 345579999999999999765554 567899999999999999998642111 12345778999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 86 VRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
+.||+.+|||+++|+..+++||.+|||+
T Consensus 87 ~~LA~~lgiDle~al~~k~~K~~~RyP~ 114 (114)
T 2q5z_A 87 CALANIHGVNLEKTRELKEVLNKVKYNR 114 (114)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999995
No 7
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=99.77 E-value=1.5e-18 Score=118.63 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHc
Q 033069 13 LDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDIC 92 (128)
Q Consensus 13 l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~l 92 (128)
+.+|.+.+..--..++|+++++|..++.+|.||++||.+++.. ++.+++.+||||+||+++.+|+.+
T Consensus 2 ~~~l~~i~lR~~~G~~W~~~qt~~~l~~~l~EE~~El~eai~~-------------~d~~~l~eElGDlLf~vv~la~~~ 68 (116)
T 2yxh_A 2 VERLLEIIERSLRKCPWLEKQSIETLLEALASEIEEVAEAVKK-------------NDLANLEEEIGDMIYDALLVAAVA 68 (116)
T ss_dssp HHHHHHHHHHHHHHCHHHHTCCHHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555522222578998889999999999999999999973 257889999999999999999998
Q ss_pred ----CCCHHHHHHHHHHHHhhhCCCc
Q 033069 93 ----GIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 93 ----gIDle~al~~k~~k~~~R~~~~ 114 (128)
|||+++|+..+++||.+|||+-
T Consensus 69 ~~~~~~d~e~al~~~~~K~~rR~~~v 94 (116)
T 2yxh_A 69 QRDYGIDLESAIQKVVEKISHRKPWL 94 (116)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHCGGG
T ss_pred hHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999983
No 8
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=99.75 E-value=1.8e-18 Score=114.56 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHH
Q 033069 10 SVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLS 89 (128)
Q Consensus 10 ~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 89 (128)
.+++.++|+++.++.- +|+..++|...+.+|.||+|||++++.+ ++++.+++||||||||++.||
T Consensus 14 ~~~l~~lq~~a~~~gf--dw~~~~~~~~~~~kl~EE~gEl~eai~~-------------~~~~~i~eELgDvLf~lv~lA 78 (95)
T 1vmg_A 14 DLELKELQSKMKEMYF--EKDSQRGIYATFTWLVEEVGELAEALLS-------------NNLDSIQEELADVIAWTVSIA 78 (95)
T ss_dssp CCCHHHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCC--CCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHH
Confidence 6889999999998863 4554346889999999999999999974 246789999999999999999
Q ss_pred HHcCCCHHHHHHHHHH
Q 033069 90 DICGIDLGKAALRKVE 105 (128)
Q Consensus 90 ~~lgIDle~al~~k~~ 105 (128)
+.+|||+++|+..++.
T Consensus 79 ~~lgiD~e~al~~k~~ 94 (95)
T 1vmg_A 79 NLEGIDIEEALKKKYK 94 (95)
T ss_dssp HHHTCCHHHHHHHHSC
T ss_pred HHHCcCHHHHHHHHhc
Confidence 9999999999998864
No 9
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=99.48 E-value=2.3e-13 Score=104.29 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHH---hcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHH--
Q 033069 12 SLDLLRQKMADFAK---ERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLV-- 86 (128)
Q Consensus 12 ~l~elq~~i~~~~~---~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~-- 86 (128)
++.+|...+..... .+.|++.+|...+.-.|.||++||+++|.. ++.+++.+||||||+.++
T Consensus 5 ~~~~L~~im~~LR~p~~gCPWD~~QT~~Sl~~yl~eE~~Ev~daI~~-------------~d~~~l~eELGDvLlqVvf~ 71 (265)
T 3cra_A 5 QIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAR-------------EDFDDLRGELGDLLFQVVFY 71 (265)
T ss_dssp HHHHHHHHHHHHHCTTTCCSSGGGCCHHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHH
Confidence 58888898988887 478999999999999999999999999984 367899999999999665
Q ss_pred -HHHHHcC-CCHHHHHHHHHHHHhhhCCCccccCCC
Q 033069 87 -RLSDICG-IDLGKAALRKVELNAIKYPATACTNGS 120 (128)
Q Consensus 87 -~lA~~lg-IDle~al~~k~~k~~~R~~~~~~~g~~ 120 (128)
++|..-| +|+++++....+|+.+|||| +.|+.
T Consensus 72 a~ia~e~g~F~~~dV~~~~~~KlirRhPh--vF~~~ 105 (265)
T 3cra_A 72 AQMAQEEGRFDFNDICAAISDKLERRHPH--VFADS 105 (265)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHTC----------
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhCCC--CCCCC
Confidence 5555555 99999999999999999999 55543
No 10
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=99.44 E-value=9.5e-13 Score=100.92 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 34 SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 34 ~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
++...+.++.||++||.+++... + ++.+.+++||||+||.++++|+++|||++.||...+.||.+||..
T Consensus 163 ~~~~v~~Kl~EEl~El~eal~~~----~-------~~~~~ieeElGDlLFalVnlAR~~gIDpE~ALr~an~KF~~Rf~~ 231 (265)
T 3cra_A 163 TLGPVVDKVYEEIDEVMYEARQA----V-------VDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFRE 231 (265)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSS----S-------CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhc----c-------CCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999998632 1 246789999999999999999999999999999999999999976
Q ss_pred c
Q 033069 114 T 114 (128)
Q Consensus 114 ~ 114 (128)
-
T Consensus 232 ~ 232 (265)
T 3cra_A 232 V 232 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=98.91 E-value=4e-10 Score=86.59 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 033069 11 VSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSD 90 (128)
Q Consensus 11 m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 90 (128)
.++-++|+.+.++.. ++|.++++|.+++++|..|+|||++.+.|+...... .+.+++.+.+|++||+.+++.+|.
T Consensus 18 ~~L~eLQk~Ld~~i~-rdw~~~htpk~l~lAL~vElaELaE~~~WK~Wk~~~----~~~d~e~IleElVDvLHFlLSla~ 92 (271)
T 2yay_A 18 HSLAELQDGLNAMID-PSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLN----ATPDLANVRIELVDIFHFSLSGAM 92 (271)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHCCHHHHHHHHHHHHHHHHTTSCCCSSSSTT----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhHhccCCHHHHHHHHHHHHHHHHHhhCcCchhccC----CcccHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999998 899998999999999999999999888876542211 134688999999999999999999
Q ss_pred HcCCCHH
Q 033069 91 ICGIDLG 97 (128)
Q Consensus 91 ~lgIDle 97 (128)
.+|+|+.
T Consensus 93 ~lg~d~~ 99 (271)
T 2yay_A 93 QMRSTPD 99 (271)
T ss_dssp HHHTSCG
T ss_pred HhCCChH
Confidence 9999974
No 12
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=98.36 E-value=4.5e-06 Score=59.19 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCCCCC-----CHHH---HHHHHHHHHHHHHHHHHhhCC-CCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 15 LLRQKMADFAKERDWDKFH-----SPRN---LLLALVGEVGELSEIFQWKGE-VPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 15 elq~~i~~~~~~~~w~~~~-----~~~~---~~l~L~eE~gELaeai~~~~~-~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
+..+.|++|...++..... ++.. ....+.||+.|+.+++..... ...+.. ....+...+.++|+|++.++
T Consensus 15 ~~~~~V~eFH~~f~~~~~~~P~~~~~~~~~lR~~li~EEl~E~~e~~~~~~~~~~~~~A-~~~~dlve~aDAL~DllYv~ 93 (154)
T 2yf4_A 15 TNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEA-LSAGDLAPLAHELADLLYVT 93 (154)
T ss_dssp CHHHHHHHHHHHHTCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCGGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-cccccHHHHHHHHhChhhHH
Confidence 4456677777777654322 2332 256678999999985443210 000000 12346789999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhC
Q 033069 86 VRLSDICGIDLGKAALRKVELNAIKY 111 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~~R~ 111 (128)
...+..+|||++.++.+-..-|..+.
T Consensus 94 ~G~~~~~Gid~~~vf~eVh~SNMsKl 119 (154)
T 2yf4_A 94 YGALDQLGIDADAVFAEVHRANLSKA 119 (154)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999777777775
No 13
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=98.25 E-value=1.4e-05 Score=52.20 Aligned_cols=82 Identities=24% Similarity=0.223 Sum_probs=62.0
Q ss_pred CCCcC-CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHH
Q 033069 7 DGESV-SLDLLRQKMADFAKERDWDKF------HSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELS 79 (128)
Q Consensus 7 ~~~~m-~l~elq~~i~~~~~~~~w~~~------~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELg 79 (128)
+.++| .|.+|.+.|.+-.....-+.+ ..+..+..++.||+.|+.-+... ++++++..|.|
T Consensus 3 ~~~~~~~l~~L~~~I~~Rk~~~pe~SYT~~L~~~G~~ki~kKvgEEA~E~iiAak~-------------~~~~~l~~E~A 69 (93)
T 1y6x_A 3 QSLAVKTFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEH-------------ESNDALAEEIS 69 (93)
T ss_dssp ----CCSHHHHHHHHHHHHHHCCTTCHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH-------------SCHHHHHHHHH
T ss_pred CccHhhHHHHHHHHHHHHHcCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHHh-------------CCHHHHHHHHH
Confidence 34445 588999888876655433222 13556789999999999888652 36889999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 033069 80 DVLLYLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 80 DvL~~l~~lA~~lgIDle~al~ 101 (128)
|+++.++.+....||++++++.
T Consensus 70 DLlYHllVlL~~~gv~l~dV~~ 91 (93)
T 1y6x_A 70 QLLYWTQVLMISRGLSLDDVYR 91 (93)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHh
Confidence 9999999999999999999874
No 14
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=98.16 E-value=2.1e-05 Score=53.21 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKFH------SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~~------~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
.|.+|.+.|.+-.....-..|. .+..++.++.||+.|+.-+... ++++.+..|.||+++.+
T Consensus 5 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak~-------------~d~~el~~E~ADLlYHl 71 (116)
T 2a7w_A 5 VLKNIADTLEARREAAPQSSYVASLFHKGEDAILKKVAEEAAETLMASKD-------------KDKLHLVREVADLWFHT 71 (116)
T ss_dssp CHHHHHHHHHHGGGSCTTTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-------------CCHHHHHHHHHHHHHHH
Confidence 4788888777544333222210 2455689999999999888652 36889999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhCC
Q 033069 86 VRLSDICGIDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~~~R~~ 112 (128)
+.+....||++++++. .+.+|+.
T Consensus 72 lVlL~~~gv~l~dV~~----eL~~R~~ 94 (116)
T 2a7w_A 72 MVLLTYHGLRPEDVVM----ELHRREG 94 (116)
T ss_dssp HHHHHHTTCCHHHHHH----HHHHHCC
T ss_pred HHHHHHcCCCHHHHHH----HHHHHhc
Confidence 9999999999999874 5666764
No 15
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=98.07 E-value=5.3e-05 Score=49.84 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHh-cCCCCCC------CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKE-RDWDKFH------SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLY 84 (128)
Q Consensus 12 ~l~elq~~i~~~~~~-~~w~~~~------~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~ 84 (128)
+|.+|.+.|.+-... ..-+.+. .+..+..++.||+.|+.-+... ++++.+..|.||+++.
T Consensus 5 ~L~~L~~~I~~Rk~~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak~-------------~d~~~l~~E~ADLlYH 71 (98)
T 1yxb_A 5 TFEELFTELQHKAANGDPATSRTAELVDKGVHAIGKKVVEEAAEVWMAAEY-------------EGKDAAAEEISQLLYH 71 (98)
T ss_dssp CHHHHHHHHHHHTCC----CCSSCCHHHHCHHHHHHHHHHHHHHHHHHHHH-------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHHh-------------CCHHHHHHHHHHHHHH
Confidence 377777777654433 2212221 2455789999999999988652 3688999999999999
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 033069 85 LVRLSDICGIDLGKAALR 102 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~ 102 (128)
++.+....||++++++..
T Consensus 72 llVlL~~~gv~l~dV~~e 89 (98)
T 1yxb_A 72 VQVMMVARGISLDDVYAH 89 (98)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 999999999999999864
No 16
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=98.00 E-value=0.00012 Score=49.40 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKFH------SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYL 85 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~~------~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 85 (128)
.|.+|.+.|.+=.....-+.|. .+..++.++.||+.|+.-+... ++++.+..|.||+++.+
T Consensus 4 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak~-------------~d~~~l~~E~ADLlYHl 70 (115)
T 1yvw_A 4 AFKLLYKTIEERKGSPLPESYTNYLFSKGEDKILKKIGEECAEVIIACKN-------------NDKEEVVKEMVDVFYHC 70 (115)
T ss_dssp CHHHHHHHHHHHHHSCCTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHH
Confidence 4788888777655544322221 2456789999999999888652 36889999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 033069 86 VRLSDICGIDLGKAALRKVELN 107 (128)
Q Consensus 86 ~~lA~~lgIDle~al~~k~~k~ 107 (128)
+.+....||++++++..-..+.
T Consensus 71 lVlL~~~gv~l~dV~~eL~~R~ 92 (115)
T 1yvw_A 71 FVLLAEKNIALEDVMREVKERN 92 (115)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHh
Confidence 9999999999999886544443
No 17
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=97.81 E-value=0.0004 Score=49.82 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCCCC-----CHHH---HHHHHHHH-HHHHHHHHHhh------------------C--CCCCCCCCCc
Q 033069 17 RQKMADFAKERDWDKFH-----SPRN---LLLALVGE-VGELSEIFQWK------------------G--EVPKGLPDWK 67 (128)
Q Consensus 17 q~~i~~~~~~~~w~~~~-----~~~~---~~l~L~eE-~gELaeai~~~------------------~--~~~~g~~~~~ 67 (128)
-..|++|...++..... ++.. .+..+.|| +.|+.+++... . -...+.....
T Consensus 8 ~~~VkeFH~~f~~p~~e~P~~~~~e~~~lR~~l~~EE~l~E~l~A~~~~~~~~~~~~~~l~~~id~a~~k~~~~~~~~~~ 87 (171)
T 2rfp_A 8 YQDVKQFHQTFHHPGADQPTAIPLDRGVKRATWTAEEAVVEFLHQSSQNETEFLAAIETFKAGLDQAVKKSLKETYPVTE 87 (171)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCCCHHHHHHHHHHHHHHHTHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSH
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 35677888877665432 2333 25667899 99999876211 0 0001111101
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhC-CCc
Q 033069 68 EEEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKY-PAT 114 (128)
Q Consensus 68 ~~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~-~~~ 114 (128)
+.+...+.++|+|++.+++..+-.+|||++.++..-..-|..+. +.+
T Consensus 88 ~~dlve~aDaL~Dl~Yv~~G~~~~~Gid~~~~~~eVh~SNmsKl~~dG 135 (171)
T 2rfp_A 88 VERLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAKLGPDG 135 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCTTS
T ss_pred cccHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcCCCC
Confidence 12578899999999999999999999999999999999999997 544
No 18
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=97.57 E-value=0.00059 Score=49.00 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhC
Q 033069 69 EEKIHLGEELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKY 111 (128)
Q Consensus 69 ~~~~~l~eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~ 111 (128)
.+...+.++|+|++++++..+..+|||+..|+.+-..-|..+.
T Consensus 89 ~d~ve~~DaL~D~~yv~~g~~~~~g~~~~~~~~eV~~sNmsKl 131 (171)
T 3nl9_A 89 ERLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAKL 131 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccc
Confidence 4567889999999999999999999999999999999999993
No 19
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP pyrophosphatase, dimeric, ligand complex, magnesium IONS, pathogen, drug target; HET: DUN; 1.65A {Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Probab=96.96 E-value=0.0037 Score=46.58 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHH----HHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHH
Q 033069 12 SLDLLRQKMADFAKERDWDKFHSPRN----LLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVR 87 (128)
Q Consensus 12 ~l~elq~~i~~~~~~~~w~~~~~~~~----~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~ 87 (128)
+|=++|+.+..-.....|....++.. ..++|..|+||+++...|+-..... .+.+++.+-+|+.|++.+++.
T Consensus 9 ~LfelQk~Ld~~I~~~~~~l~~~~~~~~~~~~lAl~vElaElae~~~wK~WK~~~----~~~d~e~ileEyVDilHFiLS 84 (229)
T 1w2y_A 9 NMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIYMECAELIDSFTWKHWKNIS----SLTNWENVRIEIVDIWHFILS 84 (229)
T ss_dssp HHHHHHHHHHHHHHCTTGGGSBCTTCCBCCHHHHHHHHHHHHHTTSCCCSSSSTT----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHhhCCcccccCC----CCCCHHHHHHHHHHHHHHHHH
Confidence 45677888877765244532112222 4678999999999876654331100 124688999999999999999
Q ss_pred HHHHc
Q 033069 88 LSDIC 92 (128)
Q Consensus 88 lA~~l 92 (128)
++...
T Consensus 85 i~l~~ 89 (229)
T 1w2y_A 85 LLLEE 89 (229)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
No 20
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY, dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB: 1ogk_A
Probab=96.53 E-value=0.0041 Score=47.83 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCCCCCCCcCCHH------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHH
Q 033069 2 TTGVGDGESVSLD------LLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLG 75 (128)
Q Consensus 2 ~~~~~~~~~m~l~------elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~ 75 (128)
||+|..+..|+-. ++|+.+..-.. ..|....+.....+.|..|++||++.+.|+-..... .+.+.+.+.
T Consensus 1 ~~~~~~~~~~~~~nL~~LfemQ~~LD~~I~-~~~~~~~~~~~~~lAL~VElaELane~~wK~Wk~~~----~~~D~e~il 75 (283)
T 1ogl_A 1 MNRVQSGFRVPARVLNSLAHLQDGLNIFMD-PDWRQIRHVDDWALAITMESAELIDSYPWKWWKNVK----AQTDMHNVR 75 (283)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHC-TTHHHHCCHHHHHHHHHHHHHHHHHTSCCCTTSCCC----SCCCHHHHH
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHHHhhCCccccCCC----CCCCHHHHH
Confidence 5777777766644 33444443332 234322234445789999999999998764321100 124688999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHH
Q 033069 76 EELSDVLLYLVRLSDICGIDLGK 98 (128)
Q Consensus 76 eELgDvL~~l~~lA~~lgIDle~ 98 (128)
+|+.|++.+++.++...+.+.+.
T Consensus 76 eEyVDilHFiLSi~le~~~~~~~ 98 (283)
T 1ogl_A 76 IEIADILHFSLSGEIQKRTQDEK 98 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999998876543
No 21
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=95.81 E-value=0.0087 Score=38.32 Aligned_cols=47 Identities=32% Similarity=0.301 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHhHHHHHHHHHHHHHHHHHHHcC
Q 033069 34 SPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEEKIHLGEELSDVLLYLVRLSDICG 93 (128)
Q Consensus 34 ~~~~~~l~L~eE~gELaeai~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~lg 93 (128)
+.+.++..|.+|..||.+++.+ ++++.+.+||-||.-+|+.|-..+.
T Consensus 57 seerllsrlfeemdelreavek-------------edwenlrdelldvanfcmylwgkls 103 (114)
T 2p06_A 57 SEERLLSRLFEEMDELREAVEK-------------EDWENLRDELLDVANFCMYLWGKLS 103 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566788999999999999974 4799999999999988887755443
No 22
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=60.06 E-value=14 Score=22.19 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhCCCccccC
Q 033069 85 LVRLSDICGIDLGKAALRKVELNAIKYPATACTN 118 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~k~~k~~~R~~~~~~~g 118 (128)
|...|+.+||++...+...+.+-.++.....+..
T Consensus 13 L~~~a~~~~iN~S~~l~~aL~~~ir~~~~~~w~~ 46 (72)
T 2adl_A 13 SYQLLKAYDVNISGLVSTTMQNEARRLRAERWKV 46 (72)
T ss_dssp THHHHHHTTCCCHHHHHHHHHHHHHHCSSCCCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556999999999999999999999888766543
No 23
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=57.50 E-value=22 Score=19.45 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCHHHHHH
Q 033069 85 LVRLSDICGIDLGKAAL 101 (128)
Q Consensus 85 l~~lA~~lgIDle~al~ 101 (128)
+..+|..+|++++..+.
T Consensus 50 l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 50 LLALSKALQCSPDYLLK 66 (68)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHhc
Confidence 67789999999988764
No 24
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=55.62 E-value=16 Score=27.71 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCCc
Q 033069 76 EELSDVLLYLVRLSDICGIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 76 eELgDvL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~~ 114 (128)
+.+-.++-.++.|+..+|+++..++..|...|..|-.++
T Consensus 155 ~~~~~l~~~Fl~Lg~~lGfsI~~aY~~KN~lN~~RQ~~G 193 (271)
T 2yay_A 155 YRFDVIIECIIYAAEDLGFNLVAYYIAKHTLNCIRQLSG 193 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcC
Confidence 344555667788999999999999999999999994444
No 25
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=54.65 E-value=26 Score=19.60 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCHHHHHH
Q 033069 85 LVRLSDICGIDLGKAAL 101 (128)
Q Consensus 85 l~~lA~~lgIDle~al~ 101 (128)
+..+|..+|++++..+.
T Consensus 50 l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 50 LLALSKALQCSPDYLLK 66 (76)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHhc
Confidence 67789999999988775
No 26
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=48.57 E-value=23 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033069 71 KIHLGEELSDVLLYLVRLSDICGIDLGKA 99 (128)
Q Consensus 71 ~~~l~eELgDvL~~l~~lA~~lgIDle~a 99 (128)
.+++.+++.+++ +-.+|+++|+|.++.
T Consensus 83 ~~el~~~V~~vv--vhEiahh~G~~~e~l 109 (114)
T 3e11_A 83 ESEVIDEVRKTV--VHEIAHHFGIDDERL 109 (114)
T ss_dssp HHHHHHHHHHHH--HHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHHcCCCHHHH
Confidence 345555555554 346999999998875
No 27
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=42.16 E-value=43 Score=19.20 Aligned_cols=25 Identities=4% Similarity=-0.355 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAALRKVELN 107 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al~~k~~k~ 107 (128)
-.+..||..||++++..+.......
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~~~~~~ 78 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFFEMLIKEI 78 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcCChHhh
Confidence 3577899999999999987765543
No 28
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=39.55 E-value=59 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 81 VLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 81 vL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
+.-++..+|+.||+|+++.+...-....
T Consensus 54 ~~~~l~~iA~~Lgv~~~~L~~~~~~~~~ 81 (112)
T 2wus_R 54 IKSYIKRYSEFLELSPDEMLKLYEEGKE 81 (112)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHhhcc
Confidence 4567889999999999998876555443
No 29
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=37.79 E-value=48 Score=17.71 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhCC
Q 033069 82 LLYLVRLSDICGIDLGKAALRKVELNAIKYP 112 (128)
Q Consensus 82 L~~l~~lA~~lgIDle~al~~k~~k~~~R~~ 112 (128)
+-.|-.+|...|++..+.+...+..+..++.
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 3455678899999999999999998877765
No 30
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY, dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB: 1ogk_A
Probab=37.75 E-value=30 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhhCCCc
Q 033069 81 VLLYLVRLSDICGIDLGKAALRKVELNAIKYPAT 114 (128)
Q Consensus 81 vL~~l~~lA~~lgIDle~al~~k~~k~~~R~~~~ 114 (128)
++-.++.++..+|+++..++..|...|..|-.++
T Consensus 175 l~~~fl~Lg~~lGfsI~~aYv~KN~lN~~RQ~~G 208 (283)
T 1ogl_A 175 ITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKG 208 (283)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcC
Confidence 3556678999999999999999999999994443
No 31
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=37.73 E-value=51 Score=20.18 Aligned_cols=24 Identities=4% Similarity=-0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 033069 84 YLVRLSDICGIDLGKAALRKVELN 107 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~k~~k~ 107 (128)
.+..||..||+++++.+.......
T Consensus 72 ~l~~ia~~l~v~~~~l~~~~~~e~ 95 (99)
T 3g5g_A 72 SLELIMKGLEVSDVVFFEMLIKEI 95 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhccCHHHH
Confidence 577899999999999988766544
No 32
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.82 E-value=49 Score=18.93 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 033069 84 YLVRLSDICGIDLGKAALRKV 104 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~k~ 104 (128)
.+..+|..+|++++..+....
T Consensus 58 ~l~~l~~~l~~~~~~l~~~~~ 78 (83)
T 3f6w_A 58 EFMDFCRGIGTDPYALLSKLE 78 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 678899999999998876543
No 33
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=30.57 E-value=1.1e+02 Score=19.65 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCHH---HHHHHHHHHHhhhCCCcc---ccCCCCCCCCCCC
Q 033069 80 DVLLYLVRLSDICGIDLG---KAALRKVELNAIKYPATA---CTNGSSNKQPTPN 128 (128)
Q Consensus 80 DvL~~l~~lA~~lgIDle---~al~~k~~k~~~R~~~~~---~~g~~~~~~~~~~ 128 (128)
.|+-.+..+|...|+|.+ ..|..-|+. ..+|.... ...++.++.|+||
T Consensus 61 ~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~-S~~~Q~~~~~~~~~~~~~~~~~~~ 114 (114)
T 3rmi_A 61 YQIKRLRKLAIDTHFDPDFAEKFLKFIIKE-VVHQHEVIAEKQKIKKENLNESQN 114 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccccCCCCCCCC
Confidence 455566777888999864 333333333 33333222 2244466666665
No 34
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=30.05 E-value=24 Score=21.69 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 033069 80 DVLLYLVRLSDICGIDLGKAALRKVELNAIK 110 (128)
Q Consensus 80 DvL~~l~~lA~~lgIDle~al~~k~~k~~~R 110 (128)
+|+=-++-||-.|++|.++.+.+-|+.-...
T Consensus 22 ~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~ 52 (78)
T 4e2i_2 22 ALIEKLVELCVQYGQNEEGMVGELIAFCTST 52 (78)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4555566777778888777777777765554
No 35
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.71 E-value=52 Score=18.98 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 033069 84 YLVRLSDICGIDLGKAAL 101 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~ 101 (128)
.+..||+.|||+++..+.
T Consensus 55 ~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 55 FLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhC
Confidence 577889999999988764
No 36
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=28.92 E-value=63 Score=17.95 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 033069 84 YLVRLSDICGIDLGKAALRK 103 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~k 103 (128)
.+..+|..+|++++..+...
T Consensus 54 ~l~~la~~l~~~~~~l~~~~ 73 (77)
T 2b5a_A 54 NIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhccc
Confidence 47789999999999888653
No 37
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.69 E-value=70 Score=18.05 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 033069 84 YLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al~~ 102 (128)
.+..||..||++++..+..
T Consensus 46 ~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 46 KYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhCc
Confidence 4678999999999988753
No 38
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=28.65 E-value=53 Score=18.98 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAA 100 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al 100 (128)
-.+..||..||+++.+.+
T Consensus 58 ~~l~~ia~~l~v~~~~l~ 75 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVA 75 (86)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHh
Confidence 447789999999998876
No 39
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=27.29 E-value=39 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 79 SDVLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 79 gDvL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
+=+|-|++.||+.+|.|+..++..-..++.
T Consensus 100 ~llLQYIlELak~L~~dpr~~v~~FF~ki~ 129 (265)
T 1us7_B 100 TIVMQFILELAKSLKVDPRACFRQFFTKIK 129 (265)
T ss_dssp HHHHHHHHHHHHHHSSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHh
Confidence 668899999999999977776666555553
No 40
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=24.60 E-value=62 Score=17.50 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 033069 85 LVRLSDICGIDLGKAALR 102 (128)
Q Consensus 85 l~~lA~~lgIDle~al~~ 102 (128)
+..||..+|++++..+..
T Consensus 45 l~~la~~l~~~~~~l~~~ 62 (69)
T 1r69_A 45 LPELASALGVSVDWLLNG 62 (69)
T ss_dssp HHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHCcCHHHHhCC
Confidence 677899999999887753
No 41
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.15 E-value=54 Score=18.33 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCCHHHHH
Q 033069 84 YLVRLSDICGIDLGKAA 100 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al 100 (128)
.+..||..+|+++++.+
T Consensus 52 ~l~~ia~~l~~~~~~l~ 68 (78)
T 3b7h_A 52 TIRKVCGTLGISVHDFF 68 (78)
T ss_dssp HHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHcCCCHHHHh
Confidence 46778899999998876
No 42
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.85 E-value=1.3e+02 Score=19.26 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 033069 80 DVLLYLVRLSDICGIDLGKAALRKVELNA 108 (128)
Q Consensus 80 DvL~~l~~lA~~lgIDle~al~~k~~k~~ 108 (128)
+|+--|+-||..|++|.++-+.+-|+.-.
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAFst 73 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAFCT 73 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46666777777777777776666666533
No 43
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.97 E-value=67 Score=17.46 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=14.1
Q ss_pred HHHHHHHcCCCHHHHHH
Q 033069 85 LVRLSDICGIDLGKAAL 101 (128)
Q Consensus 85 l~~lA~~lgIDle~al~ 101 (128)
+..||..+|++++..+.
T Consensus 47 l~~i~~~l~~~~~~l~~ 63 (71)
T 1zug_A 47 LFEIAMALNCDPVWLQY 63 (71)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHhC
Confidence 67789999999988764
No 44
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.09 E-value=1.3e+02 Score=18.42 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAALRKVEL 106 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al~~k~~k 106 (128)
-.+..||+.||+++++.+......
T Consensus 71 ~~l~~la~~l~v~~~~l~~~~~~~ 94 (117)
T 3f52_A 71 ELLASVCHALGASVADVLIEAAGS 94 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHhccccc
Confidence 457788999999999988766554
No 45
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.82 E-value=1.5e+02 Score=18.37 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=17.8
Q ss_pred CcCCHHHHHHHHHHHHHhcCCC
Q 033069 9 ESVSLDLLRQKMADFAKERDWD 30 (128)
Q Consensus 9 ~~m~l~elq~~i~~~~~~~~w~ 30 (128)
+.+.+..+-+.++.....++|.
T Consensus 6 ~~~~~~~~g~~lk~~R~~~gls 27 (126)
T 3ivp_A 6 DKYDFRALGLAIKEARKKQGLT 27 (126)
T ss_dssp TSCCTHHHHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHHHHHcCCC
Confidence 4566777888899999999984
No 46
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=21.62 E-value=1.4e+02 Score=18.28 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=22.2
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 033069 6 GDGESVSLDLLRQKMADFAKERDWDKFHSPRNLLLALVGEVGELSEI 52 (128)
Q Consensus 6 ~~~~~m~l~elq~~i~~~~~~~~w~~~~~~~~~~l~L~eE~gELaea 52 (128)
.+++.|+|.++.+.|.++-.+-- .....-+.++.++|++...
T Consensus 7 ~~~~~~~L~~lR~~ID~iD~~Ll-----~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 7 ESQPVPEIDTLREEIDRLDAEIL-----ALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp ------CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 34668899999999997632210 1333355666777766543
No 47
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=21.44 E-value=99 Score=19.87 Aligned_cols=20 Identities=5% Similarity=0.192 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 033069 83 LYLVRLSDICGIDLGKAALR 102 (128)
Q Consensus 83 ~~l~~lA~~lgIDle~al~~ 102 (128)
-++..+|+.+|+|+++.+..
T Consensus 52 ~~l~~ia~~L~v~~~~l~~~ 71 (130)
T 3fym_A 52 GFIRKYASVVNIEPNQLIQA 71 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 45889999999999998864
No 48
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.04 E-value=49 Score=17.71 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCHHHHH
Q 033069 84 YLVRLSDICGIDLGKAA 100 (128)
Q Consensus 84 ~l~~lA~~lgIDle~al 100 (128)
.+..+|..+|++++..+
T Consensus 45 ~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 45 LALKIAYYLNTPLEDIF 61 (66)
T ss_dssp HHHHHHHHTTSCHHHHE
T ss_pred HHHHHHHHHCcCHHHHh
Confidence 46778889999988754
No 49
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.13 E-value=98 Score=21.87 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=19.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhhhCCC
Q 033069 87 RLSDICGIDLGKAALRKVELNAIKYPA 113 (128)
Q Consensus 87 ~lA~~lgIDle~al~~k~~k~~~R~~~ 113 (128)
..|..+|+++++++..---.+.++|.+
T Consensus 22 ~vAek~~~~~Eely~~i~w~L~~kyG~ 48 (188)
T 1yz7_A 22 LAAEKLGKDFETAWREVWVPLEEEWGE 48 (188)
T ss_dssp HHHHHTTCCHHHHHHHTHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCc
Confidence 456677788887777776677777754
Done!