Query 033071
Match_columns 128
No_of_seqs 70 out of 72
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4646 Uncharacterized conser 100.0 3.8E-61 8.2E-66 372.2 7.1 121 6-126 1-121 (173)
2 cd00020 ARM Armadillo/beta-cat 99.4 2.2E-12 4.8E-17 86.8 8.8 104 21-125 7-112 (120)
3 PF04826 Arm_2: Armadillo-like 99.0 1.9E-09 4E-14 88.1 9.4 94 21-116 12-105 (254)
4 KOG1206 Peroxisomal multifunct 98.6 1.2E-08 2.7E-13 84.7 2.4 76 15-101 6-81 (272)
5 cd00020 ARM Armadillo/beta-cat 98.6 1.4E-07 3.1E-12 63.2 5.7 68 59-126 3-71 (120)
6 PF05804 KAP: Kinesin-associat 98.5 4.3E-07 9.4E-12 83.8 9.1 98 20-118 289-386 (708)
7 PLN03200 cellulose synthase-in 98.5 4.3E-07 9.3E-12 91.4 8.4 102 23-125 406-509 (2102)
8 PLN03200 cellulose synthase-in 98.3 2.1E-06 4.4E-11 86.7 8.7 103 21-124 651-755 (2102)
9 PF05804 KAP: Kinesin-associat 98.3 4.1E-06 8.9E-11 77.4 9.2 80 46-125 273-352 (708)
10 PF00514 Arm: Armadillo/beta-c 98.2 7.1E-07 1.5E-11 53.3 2.4 40 52-91 1-40 (41)
11 KOG4224 Armadillo repeat prote 98.0 1.4E-05 3.1E-10 71.0 6.8 101 22-123 209-311 (550)
12 PF04826 Arm_2: Armadillo-like 97.9 6.9E-05 1.5E-09 61.4 9.1 104 21-126 93-198 (254)
13 smart00185 ARM Armadillo/beta- 97.9 1.9E-05 4.2E-10 45.3 3.6 40 52-91 1-40 (41)
14 PF09759 Atx10homo_assoc: Spin 97.8 4.2E-05 9.1E-10 55.7 5.4 64 39-102 3-70 (102)
15 KOG4224 Armadillo repeat prote 97.8 5.4E-05 1.2E-09 67.4 6.8 103 22-125 252-355 (550)
16 PF00514 Arm: Armadillo/beta-c 97.7 2.7E-05 6E-10 46.3 2.1 33 93-125 1-33 (41)
17 KOG0166 Karyopherin (importin) 97.5 0.00032 7E-09 63.2 7.7 100 21-120 109-210 (514)
18 smart00185 ARM Armadillo/beta- 97.3 0.00026 5.5E-09 40.6 2.7 33 93-125 1-33 (41)
19 KOG1048 Neural adherens juncti 97.1 0.0018 4E-08 60.5 7.6 87 31-118 528-620 (717)
20 KOG1048 Neural adherens juncti 96.7 0.005 1.1E-07 57.6 7.2 97 23-121 568-671 (717)
21 PF13646 HEAT_2: HEAT repeats; 96.7 0.008 1.7E-07 39.1 6.3 81 23-123 1-81 (88)
22 KOG2160 Armadillo/beta-catenin 96.6 0.0062 1.3E-07 52.7 6.5 94 33-126 94-192 (342)
23 KOG2122 Beta-catenin-binding p 96.5 0.0017 3.6E-08 65.2 2.7 67 56-122 523-590 (2195)
24 COG5064 SRP1 Karyopherin (impo 96.4 0.012 2.7E-07 52.4 7.1 91 32-124 167-263 (526)
25 KOG1293 Proteins containing ar 96.3 0.004 8.7E-08 57.9 4.0 66 59-124 415-481 (678)
26 KOG4646 Uncharacterized conser 96.3 0.007 1.5E-07 47.9 4.4 85 23-112 60-145 (173)
27 PF10508 Proteasom_PSMB: Prote 96.2 0.027 5.8E-07 49.7 8.3 101 19-120 75-176 (503)
28 COG5064 SRP1 Karyopherin (impo 95.9 0.014 3E-07 52.1 5.0 80 39-118 132-213 (526)
29 PF10508 Proteasom_PSMB: Prote 95.7 0.046 1E-06 48.2 7.7 96 24-120 163-259 (503)
30 PF03224 V-ATPase_H_N: V-ATPas 95.7 0.039 8.5E-07 45.2 6.7 94 20-113 190-292 (312)
31 KOG4500 Rho/Rac GTPase guanine 95.3 0.069 1.5E-06 48.8 7.2 92 20-112 86-186 (604)
32 KOG0166 Karyopherin (importin) 95.1 0.14 3E-06 46.6 8.7 105 21-125 321-428 (514)
33 PRK09687 putative lyase; Provi 95.0 0.04 8.7E-07 45.3 4.7 68 20-91 89-156 (280)
34 PF13513 HEAT_EZ: HEAT-like re 94.8 0.086 1.9E-06 32.4 4.8 54 37-90 2-55 (55)
35 PF05536 Neurochondrin: Neuroc 94.5 0.1 2.2E-06 47.1 6.1 83 34-116 69-152 (543)
36 PF03224 V-ATPase_H_N: V-ATPas 93.2 0.2 4.3E-06 41.1 5.2 101 21-121 146-256 (312)
37 PF14663 RasGEF_N_2: Rapamycin 93.1 0.21 4.5E-06 36.3 4.7 55 64-118 9-72 (115)
38 PF08045 CDC14: Cell division 92.6 0.27 5.9E-06 41.0 5.3 66 52-117 122-189 (257)
39 PF13646 HEAT_2: HEAT repeats; 91.9 0.32 6.9E-06 31.5 3.9 51 65-125 1-52 (88)
40 KOG4500 Rho/Rac GTPase guanine 91.3 0.73 1.6E-05 42.4 6.9 99 21-120 315-418 (604)
41 PF06025 DUF913: Domain of Unk 90.7 0.54 1.2E-05 40.7 5.3 73 46-118 133-210 (379)
42 PF04063 DUF383: Domain of unk 90.5 1.2 2.5E-05 35.4 6.6 97 16-112 47-152 (192)
43 PF11701 UNC45-central: Myosin 90.4 0.41 9E-06 36.1 3.9 96 21-119 46-143 (157)
44 KOG4199 Uncharacterized conser 90.0 1.8 3.8E-05 38.9 7.9 92 23-114 285-382 (461)
45 PF09759 Atx10homo_assoc: Spin 89.0 0.3 6.6E-06 35.6 2.1 30 84-113 7-37 (102)
46 KOG2122 Beta-catenin-binding p 88.3 1.6 3.5E-05 45.1 7.1 98 18-116 391-493 (2195)
47 PF02985 HEAT: HEAT repeat; I 84.9 0.97 2.1E-05 25.3 2.3 28 64-91 1-28 (31)
48 PRK09687 putative lyase; Provi 84.3 3.8 8.2E-05 33.7 6.4 48 35-92 141-188 (280)
49 KOG4199 Uncharacterized conser 83.8 4.1 8.8E-05 36.6 6.7 82 43-124 263-350 (461)
50 KOG2160 Armadillo/beta-catenin 83.5 4.4 9.5E-05 35.4 6.7 100 21-121 124-226 (342)
51 PF12460 MMS19_C: RNAPII trans 82.8 6.3 0.00014 33.7 7.4 84 23-112 325-410 (415)
52 cd00256 VATPase_H VATPase_H, r 81.2 5.8 0.00013 35.3 6.8 94 22-116 186-288 (429)
53 PF01602 Adaptin_N: Adaptin N 80.7 7.9 0.00017 32.8 7.2 51 64-120 80-130 (526)
54 KOG1222 Kinesin associated pro 80.2 5.3 0.00011 37.6 6.3 101 18-121 342-443 (791)
55 PF05918 API5: Apoptosis inhib 79.0 2.7 5.8E-05 38.7 4.0 91 16-118 19-110 (556)
56 COG5369 Uncharacterized conser 76.1 1.5 3.4E-05 41.1 1.7 62 57-118 425-487 (743)
57 PF11698 V-ATPase_H_C: V-ATPas 75.7 2.3 5E-05 31.8 2.2 73 44-126 32-108 (119)
58 PF08216 CTNNBL: Catenin-beta- 75.2 4.1 8.8E-05 30.2 3.4 81 21-125 26-108 (108)
59 PF08216 CTNNBL: Catenin-beta- 74.3 9.9 0.00021 28.2 5.2 40 40-79 64-103 (108)
60 PTZ00429 beta-adaptin; Provisi 73.0 14 0.0003 35.1 7.1 57 32-91 151-207 (746)
61 PF10165 Ric8: Guanine nucleot 72.0 8.5 0.00018 33.8 5.2 68 49-116 8-86 (446)
62 KOG1788 Uncharacterized conser 70.1 8.8 0.00019 39.5 5.3 73 13-85 458-538 (2799)
63 PF07814 WAPL: Wings apart-lik 69.6 7.8 0.00017 33.0 4.3 57 63-119 21-78 (361)
64 PF01602 Adaptin_N: Adaptin N 68.6 14 0.00029 31.4 5.5 55 32-90 124-179 (526)
65 KOG1222 Kinesin associated pro 65.4 14 0.0003 34.9 5.3 66 53-118 335-400 (791)
66 PF14771 DUF4476: Domain of un 64.2 9.9 0.00021 26.1 3.3 25 36-60 55-79 (95)
67 PF10363 DUF2435: Protein of u 63.1 5.5 0.00012 28.1 1.9 35 61-95 41-76 (92)
68 cd00256 VATPase_H VATPase_H, r 62.0 42 0.00092 30.0 7.6 101 21-121 143-245 (429)
69 PTZ00429 beta-adaptin; Provisi 60.2 76 0.0017 30.3 9.3 78 35-117 232-311 (746)
70 PF01465 GRIP: GRIP domain; I 59.5 16 0.00035 22.8 3.3 28 19-46 4-31 (46)
71 PF09324 DUF1981: Domain of un 58.0 17 0.00038 25.0 3.6 64 20-85 16-81 (86)
72 PF12719 Cnd3: Nuclear condens 55.9 35 0.00076 27.8 5.6 71 20-91 63-142 (298)
73 PF05536 Neurochondrin: Neuroc 55.7 17 0.00037 32.9 4.1 52 63-114 400-461 (543)
74 PF14664 RICTOR_N: Rapamycin-i 54.1 24 0.00051 30.6 4.5 82 32-117 78-160 (371)
75 PF00452 Bcl-2: Apoptosis regu 49.9 79 0.0017 21.4 6.5 83 22-105 15-100 (101)
76 PRK13800 putative oxidoreducta 49.7 1.1E+02 0.0023 29.3 8.5 91 23-123 777-889 (897)
77 PF12755 Vac14_Fab1_bd: Vacuol 49.6 39 0.00086 23.8 4.4 38 63-102 27-64 (97)
78 PF12717 Cnd1: non-SMC mitotic 46.0 91 0.002 23.5 6.2 88 22-117 26-114 (178)
79 KOG2759 Vacuolar H+-ATPase V1 43.4 83 0.0018 28.7 6.4 89 25-115 202-300 (442)
80 COG0352 ThiE Thiamine monophos 39.1 12 0.00027 30.1 0.5 38 81-123 161-200 (211)
81 KOG2611 Neurochondrin/leucine- 39.0 1.3E+02 0.0029 28.5 7.1 104 8-112 17-160 (698)
82 PF01402 RHH_1: Ribbon-helix-h 37.9 23 0.0005 20.2 1.4 27 5-31 11-37 (39)
83 smart00755 Grip golgin-97, Ran 37.7 54 0.0012 20.6 3.2 24 20-44 4-27 (46)
84 PRK13800 putative oxidoreducta 36.2 1.7E+02 0.0037 27.9 7.6 55 25-90 625-679 (897)
85 PF07749 ERp29: Endoplasmic re 36.0 48 0.001 23.3 3.1 33 18-51 1-33 (95)
86 PF06595 BDV_P24: Borna diseas 35.1 23 0.00051 28.7 1.5 31 9-39 61-91 (201)
87 PHA00099 minor capsid protein 34.7 69 0.0015 25.0 4.0 59 5-65 44-114 (147)
88 COG5096 Vesicle coat complex, 33.4 1.2E+02 0.0026 29.3 6.1 50 44-93 147-196 (757)
89 KOG0168 Putative ubiquitin fus 33.4 76 0.0016 31.6 4.8 97 21-124 254-355 (1051)
90 PF12717 Cnd1: non-SMC mitotic 32.8 49 0.0011 24.9 2.9 57 65-125 27-84 (178)
91 COG5231 VMA13 Vacuolar H+-ATPa 32.7 27 0.00058 31.4 1.6 64 54-125 353-420 (432)
92 PF11698 V-ATPase_H_C: V-ATPas 32.2 1.4E+02 0.0031 22.3 5.2 70 18-87 40-110 (119)
93 COG2042 Uncharacterized conser 31.1 21 0.00046 28.8 0.7 25 49-73 102-126 (179)
94 PF11701 UNC45-central: Myosin 31.0 1.3E+02 0.0029 22.5 5.0 68 22-89 87-156 (157)
95 KOG2676 Uncharacterized conser 30.1 34 0.00073 31.1 1.8 62 42-103 376-441 (478)
96 PF05470 eIF-3c_N: Eukaryotic 30.1 36 0.00077 31.6 2.0 70 6-75 222-299 (595)
97 PF08855 DUF1825: Domain of un 29.9 1.1E+02 0.0025 22.7 4.3 58 1-58 17-91 (108)
98 PF11842 DUF3362: Domain of un 29.4 27 0.00059 27.3 1.0 15 48-62 50-65 (150)
99 PF04063 DUF383: Domain of unk 28.4 92 0.002 24.7 3.9 51 22-73 104-157 (192)
100 PF10274 ParcG: Parkin co-regu 28.1 66 0.0014 25.7 3.0 62 63-125 38-101 (183)
101 PF05918 API5: Apoptosis inhib 27.4 1.8E+02 0.0038 27.2 6.0 67 21-92 59-140 (556)
102 PF06371 Drf_GBD: Diaphanous G 26.8 1.4E+02 0.003 21.9 4.3 72 52-124 95-178 (187)
103 KOG3665 ZYG-1-like serine/thre 26.6 1.1E+02 0.0023 29.0 4.5 64 30-94 480-545 (699)
104 PF12348 CLASP_N: CLASP N term 26.5 74 0.0016 24.1 3.0 86 34-123 19-113 (228)
105 PLN03060 inositol phosphatase- 26.5 1.7E+02 0.0037 24.0 5.1 70 42-116 37-115 (206)
106 KOG3380 Actin-related protein 26.0 58 0.0013 25.7 2.3 75 32-117 65-150 (152)
107 PF08045 CDC14: Cell division 25.9 1.2E+02 0.0025 25.5 4.2 71 48-122 74-151 (257)
108 PF10892 DUF2688: Protein of u 25.9 46 0.001 22.5 1.5 19 84-102 37-55 (60)
109 PF14668 RICTOR_V: Rapamycin-i 25.9 2.2E+02 0.0048 19.4 5.2 65 39-103 4-69 (73)
110 PF08269 Cache_2: Cache domain 25.7 47 0.001 22.3 1.6 29 34-62 36-64 (95)
111 PF01365 RYDR_ITPR: RIH domain 25.7 62 0.0014 24.9 2.4 54 52-107 32-104 (207)
112 PTZ00313 inosine-adenosine-gua 25.6 28 0.00061 29.3 0.5 20 88-107 185-204 (326)
113 cd06811 PLPDE_III_yhfX_like Ty 24.7 35 0.00076 29.2 0.9 19 67-85 1-19 (382)
114 COG5369 Uncharacterized conser 24.7 1.3E+02 0.0028 28.9 4.6 76 26-101 520-603 (743)
115 PRK02318 mannitol-1-phosphate 24.5 4.2E+02 0.0091 22.5 7.4 58 58-115 296-362 (381)
116 PHA01623 hypothetical protein 24.3 78 0.0017 20.5 2.3 28 5-32 25-52 (56)
117 KOG1293 Proteins containing ar 24.2 1E+02 0.0022 29.5 3.9 72 52-123 40-114 (678)
118 COG0467 RAD55 RecA-superfamily 23.5 46 0.00099 26.3 1.3 63 12-74 29-98 (260)
119 PF06628 Catalase-rel: Catalas 23.5 1.8E+02 0.004 19.0 4.1 30 19-48 25-54 (68)
120 KOG2759 Vacuolar H+-ATPase V1 23.4 56 0.0012 29.7 1.9 92 25-126 318-431 (442)
121 COG1074 RecB ATP-dependent exo 23.2 34 0.00074 33.7 0.6 23 25-49 382-404 (1139)
122 KOG2999 Regulator of Rac1, req 23.1 93 0.002 29.8 3.4 51 68-118 88-138 (713)
123 PF05360 YiaAB: yiaA/B two hel 23.0 58 0.0013 20.8 1.5 18 84-101 17-34 (53)
124 PF13494 DUF4119: Domain of un 22.9 1.7E+02 0.0036 21.5 4.0 49 4-53 31-79 (96)
125 KOG1061 Vesicle coat complex A 22.9 2.4E+02 0.0053 27.3 6.1 74 19-94 118-192 (734)
126 PF03057 DUF236: Protein of un 22.6 37 0.00081 26.4 0.6 17 50-68 94-110 (141)
127 PRK13266 Thf1-like protein; Re 22.5 2.2E+02 0.0047 23.6 5.1 70 42-116 39-117 (225)
128 TIGR02270 conserved hypothetic 22.4 5.4E+02 0.012 22.7 8.0 69 32-121 127-195 (410)
129 PF12031 DUF3518: Domain of un 22.2 1.9E+02 0.0041 24.6 4.8 50 67-116 176-228 (257)
130 KOG1242 Protein containing ada 22.0 3.3E+02 0.0071 25.7 6.6 91 22-117 255-346 (569)
131 cd03561 VHS VHS domain family; 21.6 1.2E+02 0.0026 22.0 3.1 38 18-55 77-116 (133)
132 TIGR02763 chlamy_scaf chlamydi 21.4 1.8E+02 0.0039 21.9 4.0 21 6-26 15-37 (114)
133 PF11264 ThylakoidFormat: Thyl 21.2 2.2E+02 0.0048 23.3 4.9 70 42-116 34-112 (216)
134 PF14938 SNAP: Soluble NSF att 21.2 3.6E+02 0.0078 21.6 6.1 78 20-102 135-220 (282)
135 KOG0168 Putative ubiquitin fus 21.2 82 0.0018 31.4 2.7 75 38-113 168-263 (1051)
136 PRK01388 arginine deiminase; P 21.1 1.5E+02 0.0032 26.1 4.1 59 19-87 66-125 (406)
137 KOG0946 ER-Golgi vesicle-tethe 20.9 3.5E+02 0.0077 27.0 6.8 72 18-92 19-92 (970)
138 KOG2171 Karyopherin (importin) 20.5 4.4E+02 0.0095 26.8 7.5 89 21-125 4-100 (1075)
139 PF08766 DEK_C: DEK C terminal 20.3 1.2E+02 0.0027 18.9 2.6 26 5-30 27-52 (54)
140 PF07568 HisKA_2: Histidine ki 20.1 1E+02 0.0022 20.5 2.3 28 5-32 47-74 (76)
No 1
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=100.00 E-value=3.8e-61 Score=372.23 Aligned_cols=121 Identities=55% Similarity=0.859 Sum_probs=119.0
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhh
Q 033071 6 QRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVG 85 (128)
Q Consensus 6 ~~l~~Rtg~~g~~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaig 85 (128)
+++++|||++|++|+||||+||+|||+|+++|+||||+||||||||||+||.|||||+|+|+|+|+|+++|+.|||||||
T Consensus 1 ~~qk~rt~~hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIg 80 (173)
T KOG4646|consen 1 RTQKRRTPAHGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIG 80 (173)
T ss_pred CCcccCCCCccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhhccc
Q 033071 86 GICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQRFL 126 (128)
Q Consensus 86 gLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~t 126 (128)
||||+|+||.|+++|++.+|||+||.|||||+|+||.||++
T Consensus 81 glCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~ 121 (173)
T KOG4646|consen 81 GLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAAL 121 (173)
T ss_pred HHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999985
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=2.2e-12 Score=86.76 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccCh-hhHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP-ANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp-~n~~ 98 (128)
+.++.|+.-.++++ .+.|+..+..|+|++.+ |.++..+.+.++++.++++|.++++.+++.|++.|+|+|-++ ..++
T Consensus 7 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 45677887776554 78999999999999999 999999999999999999999999999999999999999885 6778
Q ss_pred HHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 99 IITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
.+.+.|.++.++++|++++.++.-+|+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHH
Confidence 888899999999999999888776654
No 3
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.02 E-value=1.9e-09 Score=88.05 Aligned_cols=94 Identities=29% Similarity=0.355 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I 100 (128)
+-++.|+.-.+.|++...+|+++..|+|.|+.|.|++.+|++|++++...+|..+++.+.+.|+.+|.|++.+.+|+..|
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHhhhcCC
Q 033071 101 TKSGGIPLIIECLSSP 116 (128)
Q Consensus 101 ~~~ggi~~i~~~LsS~ 116 (128)
-.+ |+.+.+...|.
T Consensus 92 k~~--i~~Vc~~~~s~ 105 (254)
T PF04826_consen 92 KMY--IPQVCEETVSS 105 (254)
T ss_pred HHH--HHHHHHHHhcC
Confidence 865 88877754443
No 4
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=98.65 E-value=1.2e-08 Score=84.74 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccCh
Q 033071 15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP 94 (128)
Q Consensus 15 ~g~~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp 94 (128)
.+.+|.|||-.+++++..|+ ...++.+|++||||+|.||.+. .+.|+.++....+ ..+++...||.|+|.
T Consensus 6 f~~~tkd~I~y~lg~g~t~k---d~~~~yeN~~dF~~lPt~~v~p-----~~~~~~~~~~~d~--~~~~~~lhgeqy~e~ 75 (272)
T KOG1206|consen 6 FKYTTKDCILYALGLGATSK---DLKYTYENDPDFQVLPTFAVIP-----ATATLLMDNLVDN--FDYAMLLHGEQYFEL 75 (272)
T ss_pred ccccHHHHHHHHhccccchh---HHHHHhccCccceeccceeeeh-----hHHHHHhhccchh--HHHHHHHHHHHHHHH
Confidence 78999999999999998887 7889999999999999999999 7778777766554 889999999999986
Q ss_pred hhHHHHH
Q 033071 95 ANAAIIT 101 (128)
Q Consensus 95 ~n~~~I~ 101 (128)
-. ..+.
T Consensus 76 ~~-~l~~ 81 (272)
T KOG1206|consen 76 CT-TLPS 81 (272)
T ss_pred Hc-cccc
Confidence 65 4444
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.58 E-value=1.4e-07 Score=63.25 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=62.9
Q ss_pred HHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHHHHHhcCChhhHHhhhcCCChhhhhhccc
Q 033071 59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNQRFL 126 (128)
Q Consensus 59 Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~t 126 (128)
+.+.|+++.++++|.+++..+++.|+.+|+|+|.+ |+....+++.|+++.++++|+++++.++.+|+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~ 71 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALW 71 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHH
Confidence 45789999999999999999999999999999988 999999999999999999999999998877653
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.52 E-value=4.3e-07 Score=83.77 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHH
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAI 99 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~ 99 (128)
.+.++.||.-. +.++.|..--++.-|.+.+..+.|+..+.+.++++-++.++.++++.+++-+++-|+||+.|++++..
T Consensus 289 ~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45677888777 56688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHhhhcCCCh
Q 033071 100 ITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 100 I~~~ggi~~i~~~LsS~~e 118 (128)
+++.|.||.++.+|++++-
T Consensus 368 mV~~GlIPkLv~LL~d~~~ 386 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNF 386 (708)
T ss_pred HHHCCCcHHHHHHhCCCch
Confidence 9999999999999998764
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.48 E-value=4.3e-07 Score=91.41 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhccc-ChhhHHHH
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAII 100 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFA-yDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlcl-Dp~n~~~I 100 (128)
++.||+-.+ ..+.|.|++.+.+|++.+ .++.+|..+...+.++.++++|.++++.+++.|+..|.|++- +++++..|
T Consensus 406 ik~LV~LL~-~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 406 KKVLVGLIT-MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred hhhhhhhhc-cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445677664 445799999999999999 558899999999999999999999999999999999999996 56789999
Q ss_pred HhcCChhhHHhhhcCCChhhhhhcc
Q 033071 101 TKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 101 ~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
++.||||+++++|+|+++++...|.
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999988876654
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.31 E-value=2.1e-06 Score=86.68 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhc--cCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFA--YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFA--yDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~ 98 (128)
+-+.+||.-.+ +.+.+.|+++.-.|.|.+ .++.|..++-+.|+++.++++|++++..+++.|+.+|.|++.|++++.
T Consensus 651 gaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 651 EIINPCIKLLT-NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred CCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence 34667788774 556666666776777666 567788888899999999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHhhhcCCChhhhhhc
Q 033071 99 IITKSGGIPLIIECLSSPVRNTVNQR 124 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~tVl~a 124 (128)
.|.+.|||+.++.+|++.+++.--+|
T Consensus 730 ei~~~~~I~~Lv~lLr~G~~~~k~~A 755 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGTLEGKRNA 755 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCChHHHHHH
Confidence 99999999999999999998665444
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.27 E-value=4.1e-06 Score=77.41 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=77.5
Q ss_pred hhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 46 LANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 46 LaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
|.|+|-||.+-..++.-+++.+++.+|+++|+.++-.+++-|.+||+.++||..+.+.|.|+.|..+|.|++++.+..|+
T Consensus 273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aL 352 (708)
T PF05804_consen 273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVAL 352 (708)
T ss_pred HHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999887765
No 10
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=7.1e-07 Score=53.25 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc
Q 033071 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS 91 (128)
Q Consensus 52 DP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc 91 (128)
||.|...+.+.|+++.++++|.++++.+++.|+++|+|||
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999997
No 11
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1.4e-05 Score=71.01 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhc--chhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHH
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLN--VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAI 99 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~--vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~ 99 (128)
-|.-||.-. .+++.+.|+-.+-.+.|-|.|-.++..|.|.+ +++-++|+.++++++++--|.-+|-|++.|.+-+..
T Consensus 209 ~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 209 GLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred Cchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence 355677766 78899999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHhhhcCCChhhhhh
Q 033071 100 ITKSGGIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 100 I~~~ggi~~i~~~LsS~~e~tVl~ 123 (128)
|++.|++|.++.+|.||---.++.
T Consensus 288 iv~ag~lP~lv~Llqs~~~plila 311 (550)
T KOG4224|consen 288 IVEAGSLPLLVELLQSPMGPLILA 311 (550)
T ss_pred HHhcCCchHHHHHHhCcchhHHHH
Confidence 999999999999999987655543
No 12
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.94 E-value=6.9e-05 Score=61.37 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcC-ChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHH
Q 033071 21 QYLQELVSQFQNS-TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAI 99 (128)
Q Consensus 21 eyLq~LV~Efq~t-~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~ 99 (128)
.|+.+++.+-... -+-+.+...+..|.|.+-++.+...++ +.+.-|+.+|.++++.++..++.-|+||+.+|.+...
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~ 170 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRE 170 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence 5777777765332 245666777899999999988877775 4677789999999999999999999999999999999
Q ss_pred HHhcCChhhHHhhhcCC-Chhhhhhccc
Q 033071 100 ITKSGGIPLIIECLSSP-VRNTVNQRFL 126 (128)
Q Consensus 100 I~~~ggi~~i~~~LsS~-~e~tVl~a~t 126 (128)
++...++..++.++.++ +.+..+.+||
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHH
Confidence 99999999999999887 5666777765
No 13
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.88 E-value=1.9e-05 Score=45.32 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc
Q 033071 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS 91 (128)
Q Consensus 52 DP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc 91 (128)
+|.|...+++.|+++.++.+|.++++.+++.|+++|.|++
T Consensus 1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3558999999999999999999999999999999999997
No 14
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.83 E-value=4.2e-05 Score=55.72 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhh--cCCcHHHHHHHhhhhhhcccC-hhhHHHHHh
Q 033071 39 KEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCI--TEPNEKLVEFGVGGICNASVD-PANAAIITK 102 (128)
Q Consensus 39 keqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L--~~~n~~l~efaiggLcNlclD-p~n~~~I~~ 102 (128)
|.-++.-+||.+|+ |.|-+.+|+++.|++.|++= ++.||.+.|.|+=+|=|||-+ ++|+++|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 55677788888898 99999999999999999974 567999999999999999987 999999985
No 15
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.4e-05 Score=67.37 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHH
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT 101 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~ 101 (128)
-+..||+.| +++++-+|-|..-.|.|.|.|..=---+-+.|.+++++.+|.++.-.++.-.+..|-|+++-|-|.--|.
T Consensus 252 lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 467899988 8888899999999999999997766667788999999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhhcCCCh-hhhhhcc
Q 033071 102 KSGGIPLIIECLSSPVR-NTVNQRF 125 (128)
Q Consensus 102 ~~ggi~~i~~~LsS~~e-~tVl~a~ 125 (128)
+.|=+++++.+|+..+. |+-.+|.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHH
Confidence 99999999999987654 4666664
No 16
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.68 E-value=2.7e-05 Score=46.30 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.6
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 93 Dp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
+|++++.|++.||||.++++|++++++++..|.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~ 33 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAA 33 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHH
Confidence 689999999999999999999999999987764
No 17
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00032 Score=63.25 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAy-DP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~ 98 (128)
+-++.||.-+....+...|..+.=.|.|-|. ++.+....-+.|++++|+.+|.++++.+.|-|+=+|-|++-| |..++
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 4577899888778888889888889999998 488889999999999999999999999999999999999999 99999
Q ss_pred HHHhcCChhhHHhhhcCCChhh
Q 033071 99 IITKSGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~t 120 (128)
+++.+|.++++...+..+..-+
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~ 210 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLS 210 (514)
T ss_pred HHHhhcchHHHHHHhccccchH
Confidence 9999999999999999888733
No 18
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.29 E-value=0.00026 Score=40.55 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.5
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 93 Dp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
+++++..|++.|||+.++.+|++++++++.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~ 33 (41)
T smart00185 1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAA 33 (41)
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 466999999999999999999999999988765
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.09 E-value=0.0018 Score=60.48 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=73.0
Q ss_pred hcCChHHHHHHHHHHhhhhcc-CCCcHHHH-----HhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcC
Q 033071 31 QNSTDEERKEKIVANLANFAY-DPYNYTFL-----RQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSG 104 (128)
Q Consensus 31 q~t~~~eakeqvlAnLaNFAy-DP~N~~~L-----rql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~g 104 (128)
+.+++....|.....|-|.+- ++-=-.|+ ++=++++..+++|..+++.+|+-++|.|=|++.|+.||+.|- ++
T Consensus 528 ~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~ 606 (717)
T KOG1048|consen 528 ALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KY 606 (717)
T ss_pred HHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cc
Confidence 467888888888888888753 33333444 444789999999999999999999999999999999999998 68
Q ss_pred ChhhHHhhhcCCCh
Q 033071 105 GIPLIIECLSSPVR 118 (128)
Q Consensus 105 gi~~i~~~LsS~~e 118 (128)
+|+.++.||..+..
T Consensus 607 a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 607 AIPDLVRCLPGSGP 620 (717)
T ss_pred hHHHHHHhCcCCCC
Confidence 99999999987776
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.72 E-value=0.005 Score=57.64 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC------cHHHHHHHhhhhhhcc-cChh
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP------NEKLVEFGVGGICNAS-VDPA 95 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~------n~~l~efaiggLcNlc-lDp~ 95 (128)
|+.||.-. ++.++...+-+.+.|.|.+-||.|.+.|. =.++.=|+++|... .+..+-.+.+.|+|+. -.++
T Consensus 568 l~~l~~ll-~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~ 645 (717)
T KOG1048|consen 568 LPPLVELL-RNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVL 645 (717)
T ss_pred ccHHHHHH-hcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHH
Confidence 44666655 78888888999999999999999999999 67888899999875 3688889999999998 4599
Q ss_pred hHHHHHhcCChhhHHhhhcCCChhhh
Q 033071 96 NAAIITKSGGIPLIIECLSSPVRNTV 121 (128)
Q Consensus 96 n~~~I~~~ggi~~i~~~LsS~~e~tV 121 (128)
|++..++.+||+.|+.+.+|..++-+
T Consensus 646 nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 646 NAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred HHHHHHhccChHHHHHHhcccCCHHH
Confidence 99999999999999999988777443
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.71 E-value=0.008 Score=39.13 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=65.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHh
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~ 102 (128)
|+.|+..+...++...|..++..|+++. .-.+++.+++++.++++.+...|+-+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 5678888878999999999999999552 2278999999999999999999999999872 2
Q ss_pred cCChhhHHhhhcCCChhhhhh
Q 033071 103 SGGIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 103 ~ggi~~i~~~LsS~~e~tVl~ 123 (128)
...++.+..++.++++.+|-.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHH
Confidence 346888999999988777643
No 22
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0062 Score=52.73 Aligned_cols=94 Identities=27% Similarity=0.256 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc-cChhhHHHHHhcCChhhHHh
Q 033071 33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE 111 (128)
Q Consensus 33 t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc-lDp~n~~~I~~~ggi~~i~~ 111 (128)
+.+.+.||-.+.||.=+.-|=.|-.-|..+|-+++.+..|..++..+.+.|+=-|-=+. --|..++++++.||++.++.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45678889999999999999999999999999999999999999999999987777765 56999999999999999999
Q ss_pred hhcCCChhhh----hhccc
Q 033071 112 CLSSPVRNTV----NQRFL 126 (128)
Q Consensus 112 ~LsS~~e~tV----l~a~t 126 (128)
.|+++.+++| |+||+
T Consensus 174 ~ls~~~~~~~r~kaL~Ais 192 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAIS 192 (342)
T ss_pred HHccCCCchHHHHHHHHHH
Confidence 9999999998 55554
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.49 E-value=0.0017 Score=65.25 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=61.6
Q ss_pred HHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhccc-ChhhHHHHHhcCChhhHHhhhcCCChhhhh
Q 033071 56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIITKSGGIPLIIECLSSPVRNTVN 122 (128)
Q Consensus 56 ~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlcl-Dp~n~~~I~~~ggi~~i~~~LsS~~e~tVl 122 (128)
++.||+-++|-.+|..|++..-.+|-++.|.||||+. +|+.++++.+.|.|+.+.++++|.|.-+..
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 4578999999999999999999999999999999975 699999999999999999999999876653
No 24
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.012 Score=52.43 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=78.6
Q ss_pred cCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcCCcH--HHHHHHhhhhhhcccC---hhhHHHHHhcCC
Q 033071 32 NSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNE--KLVEFGVGGICNASVD---PANAAIITKSGG 105 (128)
Q Consensus 32 ~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~~n~--~l~efaiggLcNlclD---p~n~~~I~~~gg 105 (128)
-+++++.|||++=.|.|-|=| +.=++|.-|-|++|..|.+|.++-. .++..+.=.|.|||=- |-+-.-|-..
T Consensus 167 ~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa-- 244 (526)
T COG5064 167 SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA-- 244 (526)
T ss_pred cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH--
Confidence 468899999999999999999 6778999999999999999998866 8999999999999943 4444555544
Q ss_pred hhhHHhhhcCCChhhhhhc
Q 033071 106 IPLIIECLSSPVRNTVNQR 124 (128)
Q Consensus 106 i~~i~~~LsS~~e~tVl~a 124 (128)
+|.+..++-|.++|++--|
T Consensus 245 lpiL~KLiys~D~evlvDA 263 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDA 263 (526)
T ss_pred HHHHHHHHhhcCHHHHHHH
Confidence 8999999999999998655
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.34 E-value=0.004 Score=57.86 Aligned_cols=66 Identities=18% Similarity=0.394 Sum_probs=57.1
Q ss_pred HHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHHHHHhcCChhhHHhhhcCCChhhhhhc
Q 033071 59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNQR 124 (128)
Q Consensus 59 Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a 124 (128)
+...+|+++.+.+|..|.-.+.--+.|+|||+.+| ..-|...+++|||+.+...++++..++-.++
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~ 481 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANS 481 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHH
Confidence 55668889999999888888888889999999999 7778889999999999999999998876544
No 26
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.25 E-value=0.007 Score=47.89 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=72.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHHHHH
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIIT 101 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~~I~ 101 (128)
|...|+-. .+.++-.+|--++.|+|..-||-|-.++++.+-+++-+-+|+++++..|..|++.+.=+|.- ...++.++
T Consensus 60 LdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 60 LDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 44456655 67788889999999999999999999999999999999999999999999999999999954 66777777
Q ss_pred hcCChhhHHhh
Q 033071 102 KSGGIPLIIEC 112 (128)
Q Consensus 102 ~~ggi~~i~~~ 112 (128)
. |.++.|
T Consensus 139 ~----p~Vv~~ 145 (173)
T KOG4646|consen 139 S----PAVVRT 145 (173)
T ss_pred c----HHHHHH
Confidence 4 445554
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.20 E-value=0.027 Score=49.67 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCc-HHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhH
Q 033071 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYN-YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANA 97 (128)
Q Consensus 19 R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N-~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~ 97 (128)
-.+|.+.|..=. ..++...|+-++..|.+.+.++.. ...+-+-+++.+.+.||.+++..+.+-|+..|.+++-.+..-
T Consensus 75 ~~~~~~~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH
Confidence 345666665555 468889999999999999988765 445566799999999999999999999999999999999888
Q ss_pred HHHHhcCChhhHHhhhcCCChhh
Q 033071 98 AIITKSGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 98 ~~I~~~ggi~~i~~~LsS~~e~t 120 (128)
+.++..++++.+.++++++++.+
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~v 176 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIV 176 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHH
Confidence 88999999999999999877654
No 28
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.014 Score=52.08 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHHHHHHhhhhccCCCcHHHH-HhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHHHHHhcCChhhHHhhhcCC
Q 033071 39 KEKIVANLANFAYDPYNYTFL-RQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSP 116 (128)
Q Consensus 39 keqvlAnLaNFAyDP~N~~~L-rql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~~I~~~ggi~~i~~~LsS~ 116 (128)
+-...=.|-|-|.-.-+-.+. -..+++++|+.+|.+++..+.|-|+=+|-|++=| +..+++|++.|.+.++.++|-|+
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 334455677888876665553 4679999999999999999999999999999999 88999999999999999998877
Q ss_pred Ch
Q 033071 117 VR 118 (128)
Q Consensus 117 ~e 118 (128)
..
T Consensus 212 ~~ 213 (526)
T COG5064 212 AI 213 (526)
T ss_pred cc
Confidence 65
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.74 E-value=0.046 Score=48.21 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=82.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhhhc-cCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHh
Q 033071 24 QELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (128)
Q Consensus 24 q~LV~Efq~t~~~eakeqvlAnLaNFA-yDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~ 102 (128)
..|..-. .+++...|-+|..-+.+.+ -.|.-..+...-|+++.++..|++++.-++..++--|..++..|.+.+++.+
T Consensus 163 ~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~ 241 (503)
T PF10508_consen 163 SKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ 241 (503)
T ss_pred HHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh
Confidence 3344433 3346678888998888886 7899999999999999999999998878888999999999999999999999
Q ss_pred cCChhhHHhhhcCCChhh
Q 033071 103 SGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 103 ~ggi~~i~~~LsS~~e~t 120 (128)
.|.++.|.+.+..+.++.
T Consensus 242 ~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 242 QGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred CCHHHHHHHHHhccccCC
Confidence 999999999998887765
No 30
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.70 E-value=0.039 Score=45.21 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=74.6
Q ss_pred HHHHHHHHHHh------hcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhccc
Q 033071 20 LQYLQELVSQF------QNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASV 92 (128)
Q Consensus 20 ~eyLq~LV~Ef------q~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlcl 92 (128)
.++++.|++-. ..+.+...+=+++--+|-..|+|..-+.+.+-+++..+++++.+ ..|+++.-+++.|-||+-
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 46677777777 56777888899999999999999999999999999999999976 589999999999999975
Q ss_pred Chh--hHHHHHhcCChhhHHhhh
Q 033071 93 DPA--NAAIITKSGGIPLIIECL 113 (128)
Q Consensus 93 Dp~--n~~~I~~~ggi~~i~~~L 113 (128)
-+. +...++.+|+++.+-.+.
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHh
Confidence 544 888888876665555443
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.26 E-value=0.069 Score=48.77 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcC----C---cHHHHHHHhhhhhhcc
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITE----P---NEKLVEFGVGGICNAS 91 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~----~---n~~l~efaiggLcNlc 91 (128)
.++|..|+.-- .|++.|.-+|+--.|+|-.|| -+|+..+-++|---+.+|.|+. + |+.+..-+-|-|.|+.
T Consensus 86 a~~le~Lrq~p-sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTP-SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCC-CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 45666666543 567789999999999999999 7999999999986666666642 2 5688888889999999
Q ss_pred cC-hhhHHHHHhcCChhhHHhh
Q 033071 92 VD-PANAAIITKSGGIPLIIEC 112 (128)
Q Consensus 92 lD-p~n~~~I~~~ggi~~i~~~ 112 (128)
+| ..-+.+..+.|=++.+...
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~ 186 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAIT 186 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHH
Confidence 99 6678888888888855544
No 32
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.14 Score=46.64 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC--hhhH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANA 97 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAy-DP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD--p~n~ 97 (128)
..|..|-..+..+..+--|+++.=.+.|-+- .+.--.++-..|+++..+.+|.....+++.-|+=+|||+|.. |+--
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 3455666666567777788888888888655 233444455569999999999999999999999999999865 8888
Q ss_pred HHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 98 AIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 98 ~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
.|+++.|-|+++.++|.-++..+|..++
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 8899999999999999999988877654
No 33
>PRK09687 putative lyase; Provisional
Probab=95.01 E-value=0.04 Score=45.34 Aligned_cols=68 Identities=4% Similarity=-0.118 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS 91 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc 91 (128)
.+.+..|...+.+.++.+.|..++..|+++.....+| ...+++.+...+.++++.+...|+.+|.++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 4578888888778888999999999999985433333 2234555556666666666666666666553
No 34
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.84 E-value=0.086 Score=32.37 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhc
Q 033071 37 ERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA 90 (128)
Q Consensus 37 eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNl 90 (128)
..|+..+..|++++--......-..-.+++.++++|.++++.+.+.|+.+|-|+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467888889999876655554445558999999999999999999999998764
No 35
>PF05536 Neurochondrin: Neurochondrin
Probab=94.45 E-value=0.1 Score=47.05 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcH-HHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhh
Q 033071 34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC 112 (128)
Q Consensus 34 ~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~-~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~ 112 (128)
+..+.+.=.++-|+-|+-||.--.+=.-++-|++|++++....+ .+++-+.-.|++++.-|+.++.+++.|+|+.+.+.
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 45667777788999999999988887888999999999999888 99999999999999999999999999999999999
Q ss_pred hcCC
Q 033071 113 LSSP 116 (128)
Q Consensus 113 LsS~ 116 (128)
+++.
T Consensus 149 ~~~~ 152 (543)
T PF05536_consen 149 IPNQ 152 (543)
T ss_pred HHhC
Confidence 8873
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.18 E-value=0.2 Score=41.11 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhc---CChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhh------c-CCcHHHHHHHhhhhhhc
Q 033071 21 QYLQELVSQFQN---STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCI------T-EPNEKLVEFGVGGICNA 90 (128)
Q Consensus 21 eyLq~LV~Efq~---t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L------~-~~n~~l~efaiggLcNl 90 (128)
+.|+.+++-... +++.+.+.-++..|+++...|..+..+.+-+.+..+.+.| + ..+..++=.++-.+|-|
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 455555554433 3344556778889999999999999999999999999999 2 23678889999999999
Q ss_pred ccChhhHHHHHhcCChhhHHhhhcCCChhhh
Q 033071 91 SVDPANAAIITKSGGIPLIIECLSSPVRNTV 121 (128)
Q Consensus 91 clDp~n~~~I~~~ggi~~i~~~LsS~~e~tV 121 (128)
+.+|+..+.+.+.+=|+.+..++++..-|=|
T Consensus 226 SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 226 SFEPEIAEELNKKYLIPLLADILKDSIKEKV 256 (312)
T ss_dssp TTSHHHHHHHHTTSHHHHHHHHHHH--SHHH
T ss_pred hcCHHHHHHHhccchHHHHHHHHHhcccchH
Confidence 9999999999998888888888877665543
No 37
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=93.07 E-value=0.21 Score=36.30 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=46.7
Q ss_pred chhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHh---------cCChhhHHhhhcCCCh
Q 033071 64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK---------SGGIPLIIECLSSPVR 118 (128)
Q Consensus 64 vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~---------~ggi~~i~~~LsS~~e 118 (128)
+|++.+..|.++++.++..|+--|+..|.|+...+.++. .-|-+++..+||.|..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~~G 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLSTPSG 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcchHH
Confidence 478999999999999999999999999999987777663 2477888888888754
No 38
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.56 E-value=0.27 Score=41.01 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=57.2
Q ss_pred CCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcccC-hhhHHHHHhcCChhhHHhhhcCCC
Q 033071 52 DPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPV 117 (128)
Q Consensus 52 DP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlclD-p~n~~~I~~~ggi~~i~~~LsS~~ 117 (128)
.|.=.....+-+.+.+|+|+|+. ..+.++-.++=.|..+.+| |.|.....+.+|+..|+.++++..
T Consensus 122 Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~ 189 (257)
T PF08045_consen 122 HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS 189 (257)
T ss_pred CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence 56667778888999999999954 5677888888999999999 999999999999999999998764
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.85 E-value=0.32 Score=31.45 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred hhHHHHhh-cCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 65 LELFLDCI-TEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 65 idlFld~L-~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
|+.+++.| .++++.+...|+=.|+++. +| ..++.++++|+++++.+...|+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vr~~a~ 52 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKDEDPMVRRAAA 52 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTSSSHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999 8899999999999999764 23 2388999999999988776664
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.35 E-value=0.73 Score=42.36 Aligned_cols=99 Identities=21% Similarity=0.190 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC-----cHHHHHHHhhhhhhcccChh
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-----NEKLVEFGVGGICNASVDPA 95 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~-----n~~l~efaiggLcNlclDp~ 95 (128)
++|+-+++=|. |++....---.=.++|||..-.|.-|+-|-+.+.-++++|..+ |-.++.-+..+|=|+.+-..
T Consensus 315 ~~l~~~~sw~~-S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 315 QFLDFLESWFR-SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHHHHHHHhc-CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 48999999884 4433333333335789999999999999999999999999763 56788888999999999999
Q ss_pred hHHHHHhcCChhhHHhhhcCCChhh
Q 033071 96 NAAIITKSGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 96 n~~~I~~~ggi~~i~~~LsS~~e~t 120 (128)
||..++..|=..-|..-|.+..+-+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcc
Confidence 9999998877777766666655443
No 41
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.67 E-value=0.54 Score=40.68 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=57.1
Q ss_pred hhhhccC-CCcHHHHHhhcchhHHHHhhc-CC---cHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCCh
Q 033071 46 LANFAYD-PYNYTFLRQLNVLELFLDCIT-EP---NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 46 LaNFAyD-P~N~~~Lrql~vidlFld~L~-~~---n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e 118 (128)
+..|-++ |-.+..|.+.|+++.||+.++ .. +..++----..|.=+|+-....+.+.+.+-++.+...+.|+.=
T Consensus 133 vs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~ 210 (379)
T PF06025_consen 133 VSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDY 210 (379)
T ss_pred HHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHH
Confidence 4455554 999999999999999999999 43 3444433334455568999999999999999999999887653
No 42
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.47 E-value=1.2 Score=35.41 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHhhc-----CChHHHHHHHHHHhhhhccCCCcHHHHHhhcc----hhHHHHhhcCCcHHHHHHHhhh
Q 033071 16 GTPRLQYLQELVSQFQN-----STDEERKEKIVANLANFAYDPYNYTFLRQLNV----LELFLDCITEPNEKLVEFGVGG 86 (128)
Q Consensus 16 g~~R~eyLq~LV~Efq~-----t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~v----idlFld~L~~~n~~l~efaigg 86 (128)
...+-.||..||+.|-. ....+.-+=+..-|+|.+.=|.=+.++-.-+- +.-++..++..+..=..=++|.
T Consensus 47 ~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~ 126 (192)
T PF04063_consen 47 VSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGT 126 (192)
T ss_pred cchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHH
Confidence 34566899999999977 23333445556667888888888888865542 4456666677766666667799
Q ss_pred hhhcccChhhHHHHHhcCChhhHHhh
Q 033071 87 ICNASVDPANAAIITKSGGIPLIIEC 112 (128)
Q Consensus 87 LcNlclDp~n~~~I~~~ggi~~i~~~ 112 (128)
|=|||.|.+.-..++...++..+-.+
T Consensus 127 IrNccFd~~~H~~LL~~~~~~iLp~L 152 (192)
T PF04063_consen 127 IRNCCFDTDSHEWLLSDDEVDILPYL 152 (192)
T ss_pred HHHhhccHhHHHHhcCchhhhhHHHH
Confidence 99999999999999976556655544
No 43
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.44 E-value=0.41 Score=36.14 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhc--CCcHHHHHHHhhhhhhcccChhhHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVDPANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~--~~n~~l~efaiggLcNlclDp~n~~ 98 (128)
+|++.++.+= +.++.-.=-.+++.|-==..|..|.-++.+ |+++.+++... .+++.+..-++=.|.=-|.|...++
T Consensus 46 ~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~e-g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~ 123 (157)
T PF11701_consen 46 DFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSE-GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRT 123 (157)
T ss_dssp HHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTT-THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhh-hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHH
Confidence 5666666433 122222222334444333344444444443 88899999999 6666666666666666699999999
Q ss_pred HHHhcCChhhHHhhhcCCChh
Q 033071 99 IITKSGGIPLIIECLSSPVRN 119 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~ 119 (128)
+|.++ |++.+.+.++.+..+
T Consensus 124 ~I~~~-~~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 124 FISKN-YVSWLKELYKNSKDD 143 (157)
T ss_dssp CCHHH-CHHHHHHHTTTCC-H
T ss_pred HHHHH-HHHHHHHHHccccch
Confidence 99986 899999999644433
No 44
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=1.8 Score=38.85 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHHHHhhcCChHHHH---HHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhc--CCcHHHHHHHhhhhhhcccC-hhh
Q 033071 23 LQELVSQFQNSTDEERK---EKIVANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVD-PAN 96 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eak---eqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~--~~n~~l~efaiggLcNlclD-p~n 96 (128)
|.-|+.-.-++..++-| .+++.=|.-.|=.-.|..++-+-|..|-.+..+. .++|.+++-++..||=||+- |++
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 44455545455555444 7889999999999999999999999999998886 46999999999999999997 999
Q ss_pred HHHHHhcCChhhHHhhhc
Q 033071 97 AAIITKSGGIPLIIECLS 114 (128)
Q Consensus 97 ~~~I~~~ggi~~i~~~Ls 114 (128)
...+++.||-..+++-++
T Consensus 365 sa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 999999998888777654
No 45
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=88.99 E-value=0.3 Score=35.56 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=25.8
Q ss_pred hhhhhhcccC-hhhHHHHHhcCChhhHHhhh
Q 033071 84 VGGICNASVD-PANAAIITKSGGIPLIIECL 113 (128)
Q Consensus 84 iggLcNlclD-p~n~~~I~~~ggi~~i~~~L 113 (128)
+--|.|||-+ |.+++.|.+.||||+|.+|-
T Consensus 7 vrlianl~~~~~~~Qd~vr~~~Gi~liL~~c 37 (102)
T PF09759_consen 7 VRLIANLCYKNKEVQDLVRELGGIPLILSCC 37 (102)
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHhc
Confidence 4457788876 99999999999999999884
No 46
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.34 E-value=1.6 Score=45.07 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccC--CCcHHHHHhhcchhHHHHh-hcCCcHHHHHHHhhhhhhcccC-
Q 033071 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYD--PYNYTFLRQLNVLELFLDC-ITEPNEKLVEFGVGGICNASVD- 93 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyD--P~N~~~Lrql~vidlFld~-L~~~n~~l~efaiggLcNlclD- 93 (128)
.+.+++..+|... .+..+|..+=+..-|.|+.+. -.=...||+++-+--+..| +..-+|.-+.--+.+||||+.-
T Consensus 391 s~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 5788999999988 677777766666678998885 4445689999766555554 5566888888899999999876
Q ss_pred hhhHHHHHh-cCChhhHHhhhcCC
Q 033071 94 PANAAIITK-SGGIPLIIECLSSP 116 (128)
Q Consensus 94 p~n~~~I~~-~ggi~~i~~~LsS~ 116 (128)
-+||..|-+ -|.+.-++..||..
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYE 493 (2195)
T ss_pred cccchhhhcccchHHHHHhhcccc
Confidence 899999987 67789999999876
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.92 E-value=0.97 Score=25.30 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=22.8
Q ss_pred chhHHHHhhcCCcHHHHHHHhhhhhhcc
Q 033071 64 VLELFLDCITEPNEKLVEFGVGGICNAS 91 (128)
Q Consensus 64 vidlFld~L~~~n~~l~efaiggLcNlc 91 (128)
+++.|+.++.++++.+.+.|+-+|-+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999988776653
No 48
>PRK09687 putative lyase; Provisional
Probab=84.31 E-value=3.8 Score=33.75 Aligned_cols=48 Identities=8% Similarity=0.204 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhccc
Q 033071 35 DEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV 92 (128)
Q Consensus 35 ~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlcl 92 (128)
+.+.|..++..|+.+. .-.+++.++.+|+.+++.+...|+-+|-+++.
T Consensus 141 ~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 141 STNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 5567777777776543 22367777777777777777777777776644
No 49
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=4.1 Score=36.62 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcH----HHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhh--cCC
Q 033071 43 VANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE----KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL--SSP 116 (128)
Q Consensus 43 lAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~----~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~L--sS~ 116 (128)
.-.|.-.|..-+=...+.++|-+|..+.|+++.|+ .++.-+..-|--|+=.-.+|..|++.||.+.|+.++ .|+
T Consensus 263 ~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~ 342 (461)
T KOG4199|consen 263 STTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD 342 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC
Confidence 33444455555556778899999999999999765 355555566666666778999999999999999985 455
Q ss_pred Chhhhhhc
Q 033071 117 VRNTVNQR 124 (128)
Q Consensus 117 ~e~tVl~a 124 (128)
+|.++..+
T Consensus 343 ~p~Vi~~~ 350 (461)
T KOG4199|consen 343 DPLVIQEV 350 (461)
T ss_pred ChHHHHHH
Confidence 66655443
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=4.4 Score=35.39 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcCCcH-HHHHHHhhhhhhcccC-hhhH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVD-PANA 97 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~~n~-~l~efaiggLcNlclD-p~n~ 97 (128)
+.+..|+. |=++++.+.|+-.+--++=.+-+ |.=-..+-+.+.+.-.+..|+.+++ ...-.|+++||+|.-- |...
T Consensus 124 ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 124 GGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred cCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 44667788 77889999999888888777765 7777788889999999999987654 5558899999999754 8888
Q ss_pred HHHHhcCChhhHHhhhcCCChhhh
Q 033071 98 AIITKSGGIPLIIECLSSPVRNTV 121 (128)
Q Consensus 98 ~~I~~~ggi~~i~~~LsS~~e~tV 121 (128)
+....-+|..-++.+|.+++-++-
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~ 226 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVK 226 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchH
Confidence 888888999999999999765543
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.79 E-value=6.3 Score=33.74 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhh-cchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHH
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQL-NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql-~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I 100 (128)
++.|+.-|..+++. .|..-+-.|++.--. | .--++-++ .++++.+++|+.+|+.++.-++..|..+.-|. .+.|
T Consensus 325 ~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i 400 (415)
T PF12460_consen 325 LPKLLEGFKEADDE-IKSNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELI 400 (415)
T ss_pred HHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHH
Confidence 55677778555544 787777777776655 4 44466666 79999999999999999999999999988776 3444
Q ss_pred HhcCChhhHHhh
Q 033071 101 TKSGGIPLIIEC 112 (128)
Q Consensus 101 ~~~ggi~~i~~~ 112 (128)
.+ .+.-||..
T Consensus 401 ~~--hl~sLI~~ 410 (415)
T PF12460_consen 401 SE--HLSSLIPR 410 (415)
T ss_pred HH--HHHHHHHH
Confidence 43 46655543
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=81.23 E-value=5.8 Score=35.33 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCC-hHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcccCh-----
Q 033071 22 YLQELVSQFQNST-DEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDP----- 94 (128)
Q Consensus 22 yLq~LV~Efq~t~-~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlclDp----- 94 (128)
.++.|++-.+... +...+=+++--+|=.+|+|.=-+.+.+.++|..+++++.. ..|+++.-+++.|-||.--+
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccch
Confidence 4566776666544 6677888999999999998877888889999999999986 58999999999999997632
Q ss_pred --hhHHHHHhcCChhhHHhhhcCC
Q 033071 95 --ANAAIITKSGGIPLIIECLSSP 116 (128)
Q Consensus 95 --~n~~~I~~~ggi~~i~~~LsS~ 116 (128)
.....+++. |++.+++.|+..
T Consensus 266 ~~~~~~~mv~~-~l~~~l~~L~~r 288 (429)
T cd00256 266 KKTAALQMVQC-KVLKTLQSLEQR 288 (429)
T ss_pred hhhHHHHHHHc-ChHHHHHHHhcC
Confidence 344556654 566666666553
No 53
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.72 E-value=7.9 Score=32.78 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=35.3
Q ss_pred chhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhh
Q 033071 64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 64 vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~t 120 (128)
++.-+..-|.++||.++..|+-.|||++ +|+-.+.+ ++.|.++|+++++.+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~V 130 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYV 130 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHH
Confidence 5666666677788888888888888877 55555554 466777777777744
No 54
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.17 E-value=5.3 Score=37.59 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhH
Q 033071 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANA 97 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~ 97 (128)
+-..-+..|+.-| .....+.+.-++-=|.||.+|..+++.+-+.|.++.....|.+++.. ..|+.-+--+++|-..|
T Consensus 342 ~~~~iveKL~klf-p~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K 418 (791)
T KOG1222|consen 342 EQNGIVEKLLKLF-PIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAK 418 (791)
T ss_pred HhccHHHHHHHhc-CCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHH
Confidence 3445567888888 45667778888999999999999999999999999999999888743 34666778889999999
Q ss_pred HHHHhcCChhhHHh-hhcCCChhhh
Q 033071 98 AIITKSGGIPLIIE-CLSSPVRNTV 121 (128)
Q Consensus 98 ~~I~~~ggi~~i~~-~LsS~~e~tV 121 (128)
.+..--..|+.+.. .++..++++-
T Consensus 419 ~MfayTdci~~lmk~v~~~~~~~vd 443 (791)
T KOG1222|consen 419 AMFAYTDCIKLLMKDVLSGTGSEVD 443 (791)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceec
Confidence 99988888886554 4555555543
No 55
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.03 E-value=2.7 Score=38.73 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-h
Q 033071 16 GTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-P 94 (128)
Q Consensus 16 g~~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p 94 (128)
+-..-+|..-|.. .-.+...|.=+.-+.+-|.=+ ++-|.+ .+||..+|+..+++..+.-.||-+|..+|-| |
T Consensus 19 ~~~~~~y~~il~~---~kg~~k~K~Laaq~I~kffk~---FP~l~~-~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 19 SQHEEDYKEILDG---VKGSPKEKRLAAQFIPKFFKH---FPDLQE-EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp GGGHHHHHHHHHG---GGS-HHHHHHHHHHHHHHHCC----GGGHH-HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--
T ss_pred ccCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHhh---ChhhHH-HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH
Confidence 4445566655554 234556666556667766433 222322 7899999999999999999999999999988 5
Q ss_pred hhHHHHHhcCChhhHHhhhcCCCh
Q 033071 95 ANAAIITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 95 ~n~~~I~~~ggi~~i~~~LsS~~e 118 (128)
+...-| +..+.++|.|.+.
T Consensus 92 ~~v~kv-----aDvL~QlL~tdd~ 110 (556)
T PF05918_consen 92 EHVSKV-----ADVLVQLLQTDDP 110 (556)
T ss_dssp T-HHHH-----HHHHHHHTT---H
T ss_pred HHHhHH-----HHHHHHHHhcccH
Confidence 554444 4568889998764
No 56
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=76.05 E-value=1.5 Score=41.15 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC-hhhHHHHHhcCChhhHHhhhcCCCh
Q 033071 57 TFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 57 ~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD-p~n~~~I~~~ggi~~i~~~LsS~~e 118 (128)
.-|....|.+++++.|+.|.-.+.--+.|.+||+.+- ..-++..++.|=|..|++.++|-++
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3345568999999999997665555678999999987 4456677788889999999997644
No 57
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.66 E-value=2.3 Score=31.85 Aligned_cols=73 Identities=18% Similarity=0.363 Sum_probs=49.5
Q ss_pred HHhhhhccCCCcHHHHHhhcchhHHHHhhcCC-cHHHHHHH---hhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChh
Q 033071 44 ANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFG---VGGICNASVDPANAAIITKSGGIPLIIECLSSPVRN 119 (128)
Q Consensus 44 AnLaNFAyDP~N~~~Lrql~vidlFld~L~~~-n~~l~efa---iggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~ 119 (128)
.|...| .-.||.-|+.| +++|+.+ ++..+.-| ||-+|=. -|..+..|-+.|+-..|.+++++++++
T Consensus 32 ENa~kf--~~~~~~llk~L------~~lL~~s~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h~d~e 101 (119)
T PF11698_consen 32 ENADKF--EENNFELLKKL------IKLLDKSDDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNHEDPE 101 (119)
T ss_dssp HHSGGG--SSGGGHHHHHH------HHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSHH
T ss_pred HHHHHH--HHcccHHHHHH------HHHHccCCCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcCCCHH
Confidence 466666 55577766654 6667444 55444444 4444444 488999998888888999999999999
Q ss_pred hhhhccc
Q 033071 120 TVNQRFL 126 (128)
Q Consensus 120 tVl~a~t 126 (128)
+.-.||.
T Consensus 102 Vr~eAL~ 108 (119)
T PF11698_consen 102 VRYEALL 108 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 58
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=75.23 E-value=4.1 Score=30.25 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhc--CChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHH
Q 033071 21 QYLQELVSQFQN--STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~--t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~ 98 (128)
..++.+|-.|.. +++.|.|-+ |+-||.-| +| +|.=+.-+|-.+-.|+-.|+-=.
T Consensus 26 ~~lkklvl~fek~i~kN~e~R~K-------~~ddP~KF------------md-----SE~dLd~~Ik~l~~La~~P~LYp 81 (108)
T PF08216_consen 26 AWLKKLVLSFEKRINKNQEMRIK-------YPDDPEKF------------MD-----SEVDLDEEIKKLSVLATAPELYP 81 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh-------CCCCHHHH------------HH-----hHHHHHHHHHHHHHccCChhHHH
Confidence 467777777754 455555544 77777543 33 23333445566668888999988
Q ss_pred HHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 99 IITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
..++.|+++.++++|+-+|.+++..+|
T Consensus 82 ~lv~l~~v~sL~~LL~HeN~DIai~vi 108 (108)
T PF08216_consen 82 ELVELGAVPSLLGLLSHENTDIAIDVI 108 (108)
T ss_pred HHHHcCCHHHHHHHHCCCCcceehccC
Confidence 899999999999999999999988765
No 59
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=74.28 E-value=9.9 Score=28.20 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHH
Q 033071 40 EKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKL 79 (128)
Q Consensus 40 eqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l 79 (128)
...+..|...|-.|.=|+.|-++|++..++.+|..+|--+
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 4457788999999999999999999999999999998644
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=72.97 E-value=14 Score=35.12 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=41.6
Q ss_pred cCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc
Q 033071 32 NSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS 91 (128)
Q Consensus 32 ~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc 91 (128)
+.+.--+|.-+++-+-=|..||. .+.+.+.++-..++|.++|+.++-.|+..|+.++
T Consensus 151 D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 44445555556665555777773 4455677788888899999999999999888776
No 61
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=72.01 E-value=8.5 Score=33.81 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=50.7
Q ss_pred hccCCCcHHHHHhhcchhHHHHh----------hcCCcHHHHHHHhhhhhhcc-cChhhHHHHHhcCChhhHHhhhcCC
Q 033071 49 FAYDPYNYTFLRQLNVLELFLDC----------ITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSP 116 (128)
Q Consensus 49 FAyDP~N~~~Lrql~vidlFld~----------L~~~n~~l~efaiggLcNlc-lDp~n~~~I~~~ggi~~i~~~LsS~ 116 (128)
+.-||.+.+-|-.=+.+..++.. ...+++....-|+-.|||+. ..|..++...+.|+.+.+++.|+..
T Consensus 8 LsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~ 86 (446)
T PF10165_consen 8 LSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNY 86 (446)
T ss_pred HccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcc
Confidence 44455555555444444444433 34567889999999999997 5699999999999999999999987
No 62
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.14 E-value=8.8 Score=39.49 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=60.3
Q ss_pred CCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhh-hhccCCCcHHHHHhhcchhHHHHhhcCCc-------HHHHHHHh
Q 033071 13 GRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLA-NFAYDPYNYTFLRQLNVLELFLDCITEPN-------EKLVEFGV 84 (128)
Q Consensus 13 g~~g~~R~eyLq~LV~Efq~t~~~eakeqvlAnLa-NFAyDP~N~~~Lrql~vidlFld~L~~~n-------~~l~efai 84 (128)
|...+.-++..|-|-+-|-.+.+++.+-.|+.-+. =|..||.||-.+.++--+++|++.+.--. -+++|||+
T Consensus 458 gsgkVkdLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAV 537 (2799)
T KOG1788|consen 458 GSGKVKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAV 537 (2799)
T ss_pred cCCcccchHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHH
Confidence 33345567888889999999999999999998876 48999999999999999999999987532 26778886
Q ss_pred h
Q 033071 85 G 85 (128)
Q Consensus 85 g 85 (128)
-
T Consensus 538 t 538 (2799)
T KOG1788|consen 538 T 538 (2799)
T ss_pred h
Confidence 4
No 63
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=69.61 E-value=7.8 Score=32.99 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=47.0
Q ss_pred cchhHHHHhhcCC-cHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChh
Q 033071 63 NVLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRN 119 (128)
Q Consensus 63 ~vidlFld~L~~~-n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~ 119 (128)
+-+|-++|-|... ...+..-|+-.||.-|.||+.+.++.++|.++.+..+++...++
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d 78 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD 78 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch
Confidence 3456667777733 45778899999999999999999999999999999999666655
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=68.60 E-value=14 Score=31.38 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=26.3
Q ss_pred cCChHHHHHHHHHHhhhh-ccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhc
Q 033071 32 NSTDEERKEKIVANLANF-AYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA 90 (128)
Q Consensus 32 ~t~~~eakeqvlAnLaNF-AyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNl 90 (128)
..++.-.|..++-.+..+ -.||.-.. .- .++.+..+|.++++.++..|+..++.+
T Consensus 124 ~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 124 SDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 344444444444444443 23444221 11 355555555555566665565555555
No 65
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.39 E-value=14 Score=34.92 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCCh
Q 033071 53 PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 53 P~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e 118 (128)
-.|..-+-|.++++=++-+.....+.++.--+-=+-|++.|..++--.+..|-+|.+..+|-|.+-
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc
Confidence 367778889999999999999999999999999999999999999999999999999999988764
No 66
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=64.15 E-value=9.9 Score=26.12 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhccCCCcHHHHH
Q 033071 36 EERKEKIVANLANFAYDPYNYTFLR 60 (128)
Q Consensus 36 ~eakeqvlAnLaNFAyDP~N~~~Lr 60 (128)
...|-+++.-|+...|||.|+..+-
T Consensus 55 d~~kl~~lk~l~p~i~D~~n~~~i~ 79 (95)
T PF14771_consen 55 DNDKLKALKLLYPYIVDPQNYYTII 79 (95)
T ss_pred CHHHHHHHHHHhhhccCHHHHHHHH
Confidence 3448999999999999999997653
No 67
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=63.06 E-value=5.5 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=30.1
Q ss_pred hhcchhHHHHhhcCCcHHHHHHHhhhhhhcc-cChh
Q 033071 61 QLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPA 95 (128)
Q Consensus 61 ql~vidlFld~L~~~n~~l~efaiggLcNlc-lDp~ 95 (128)
.-+++++|+..|.++++.+--.||-||+-|| .+|.
T Consensus 41 ~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 41 IPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3478899999999999999999999999987 5555
No 68
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=62.04 E-value=42 Score=30.00 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC--cHHHHHHHhhhhhhcccChhhHH
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASVDPANAA 98 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~--n~~l~efaiggLcNlclDp~n~~ 98 (128)
.|.+-|.+.++..++.+.+.-++.-|++...-|.-+..+.+.+.+..++++|+.. +-.++=.++=.||=|+.+++..+
T Consensus 143 ~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 143 YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 3666777777666778888888888999889888888888888999999999763 44677788889999999999888
Q ss_pred HHHhcCChhhHHhhhcCCChhhh
Q 033071 99 IITKSGGIPLIIECLSSPVRNTV 121 (128)
Q Consensus 99 ~I~~~ggi~~i~~~LsS~~e~tV 121 (128)
...+.+-|+.++++++.+.-|=|
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKv 245 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKV 245 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHH
Confidence 77778889999999887665544
No 69
>PTZ00429 beta-adaptin; Provisional
Probab=60.22 E-value=76 Score=30.27 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhccc--ChhhHHHHHhcCChhhHHhh
Q 033071 35 DEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--DPANAAIITKSGGIPLIIEC 112 (128)
Q Consensus 35 ~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlcl--Dp~n~~~I~~~ggi~~i~~~ 112 (128)
++=.|-.|+.-|+. |.|.+.... ..+++..+..|.+.|+.++--|+..++++.. +|+..+.+...=+ ++++.+
T Consensus 232 ~EW~Qi~IL~lL~~--y~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~-~pLv~L 306 (746)
T PTZ00429 232 NEWGQLYILELLAA--QRPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN-TALLTL 306 (746)
T ss_pred ChHHHHHHHHHHHh--cCCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HHHHHh
Confidence 46666777777754 888876653 4788888899999999999999999999864 4555555443311 455666
Q ss_pred hcCCC
Q 033071 113 LSSPV 117 (128)
Q Consensus 113 LsS~~ 117 (128)
++++.
T Consensus 307 ~ss~~ 311 (746)
T PTZ00429 307 SRRDA 311 (746)
T ss_pred hCCCc
Confidence 65443
No 70
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=59.46 E-value=16 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHh
Q 033071 19 RLQYLQELVSQFQNSTDEERKEKIVANL 46 (128)
Q Consensus 19 R~eyLq~LV~Efq~t~~~eakeqvlAnL 46 (128)
-.|||+..|-+|=.+++...|++.+-.|
T Consensus 4 ~~eYLKNvl~~fl~~~~~~~~~~llpvi 31 (46)
T PF01465_consen 4 NLEYLKNVLLQFLESREPSEREQLLPVI 31 (46)
T ss_dssp HHHHHHHHHHHHHTTSS---HHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 3699999999998888867777655444
No 71
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.04 E-value=17 Score=24.96 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhh--cchhHHHHhhcCCcHHHHHHHhh
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQL--NVLELFLDCITEPNEKLVEFGVG 85 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql--~vidlFld~L~~~n~~l~efaig 85 (128)
.++|++++.-|+.+++.+.||.|+.-+.+.--. +...|+.= -+++++-....++++.++..|.-
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~--~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~ 81 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQS--RGENIKSGWKVIFSILRAAAKDNDESLVRLAFQ 81 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH--hHHHHHhccHHHHHHHHHHHhCCCccHHHHHHH
Confidence 368999999999999999999999988766532 22333332 35566666666777777777653
No 72
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=55.91 E-value=35 Score=27.84 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhh--ccCCCcHHHHHh-------hcchhHHHHhhcCCcHHHHHHHhhhhhhc
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANF--AYDPYNYTFLRQ-------LNVLELFLDCITEPNEKLVEFGVGGICNA 90 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNF--AyDP~N~~~Lrq-------l~vidlFld~L~~~n~~l~efaiggLcNl 90 (128)
.+|+..+..-+ ..++.+.|..++..+.-. .|++...+.... ..++++|.+.|.+.++.++.-|+=|+|=|
T Consensus 63 ~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 63 KEHLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777788888 445888888777776543 355554444443 78999999999999999999999999976
Q ss_pred c
Q 033071 91 S 91 (128)
Q Consensus 91 c 91 (128)
-
T Consensus 142 l 142 (298)
T PF12719_consen 142 L 142 (298)
T ss_pred H
Confidence 4
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=55.68 E-value=17 Score=32.93 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=45.9
Q ss_pred cchhHHHHhhcCCcHH----------HHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhc
Q 033071 63 NVLELFLDCITEPNEK----------LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS 114 (128)
Q Consensus 63 ~vidlFld~L~~~n~~----------l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~Ls 114 (128)
+.+|.|++...++... .+.|=.=|||-+..+++.++.++.+||.+.+.+||.
T Consensus 400 ~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~ 461 (543)
T PF05536_consen 400 GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLL 461 (543)
T ss_pred HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHH
Confidence 8899999999876433 788999999999999999999999999998888875
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=54.09 E-value=24 Score=30.57 Aligned_cols=82 Identities=12% Similarity=0.300 Sum_probs=55.5
Q ss_pred cCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc-cChhhHHHHHhcCChhhHH
Q 033071 32 NSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLII 110 (128)
Q Consensus 32 ~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc-lDp~n~~~I~~~ggi~~i~ 110 (128)
+.+++.-|||++.=..=|--=+..-.. ---+++--.+.+...+++++..-++.-||-++ .||+ .+.+.||+..++
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~ 153 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLL 153 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHH
Confidence 345667777876544322111111001 13356667788888899999999999999998 5675 577899999998
Q ss_pred hhhcCCC
Q 033071 111 ECLSSPV 117 (128)
Q Consensus 111 ~~LsS~~ 117 (128)
+.+..+.
T Consensus 154 ~~l~d~~ 160 (371)
T PF14664_consen 154 RALIDGS 160 (371)
T ss_pred HHHHhcc
Confidence 8877543
No 75
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=49.88 E-value=79 Score=21.39 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhc--chhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHH
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLN--VLELFLDCITEPNEKLVEFGVGGICNASVDPANAA 98 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~--vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~ 98 (128)
.++.+...+...+...+++-...-..+.--| .+||..+-.+= +-.+-.++.....+.++.--+.-+.... ......
T Consensus 15 ~f~~~~~~l~~~~~~~~~~~f~~v~~~lf~d~~inWGRIval~~f~~~l~~~~~~~~~~~~v~~i~~~~~~~i-~~~~~~ 93 (101)
T PF00452_consen 15 FFENMLNQLNINTPDNAYETFNEVAEELFEDGGINWGRIVALFAFAGALAVECKERGREDLVRSIAEWLSDFI-EENLRN 93 (101)
T ss_dssp HHHHHHHHHCSSSTTTHHHHHHHHHHHHTTTSSTCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH-HHHTHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-HHhHHH
Confidence 4666677665523333444333333444456 89998877662 2245556666666666555555555544 444556
Q ss_pred HHHhcCC
Q 033071 99 IITKSGG 105 (128)
Q Consensus 99 ~I~~~gg 105 (128)
-|.++||
T Consensus 94 WI~~~GG 100 (101)
T PF00452_consen 94 WIISQGG 100 (101)
T ss_dssp HHHHTTH
T ss_pred HHHHCCC
Confidence 6666665
No 76
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=49.69 E-value=1.1e+02 Score=29.26 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhhhccCCCc-----------HHHHHh-----------hcchhHHHHhhcCCcHHHH
Q 033071 23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYN-----------YTFLRQ-----------LNVLELFLDCITEPNEKLV 80 (128)
Q Consensus 23 Lq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N-----------~~~Lrq-----------l~vidlFld~L~~~n~~l~ 80 (128)
+..|+.-. ..++.+.|.-++..|+++-..+.- ...+|. -.++++++.+|.++++.+.
T Consensus 777 ~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR 855 (897)
T PRK13800 777 GDAVRALT-GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVR 855 (897)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHH
Confidence 44555444 334578888888888877554321 111221 1355777778878888888
Q ss_pred HHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhh
Q 033071 81 EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 81 efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~ 123 (128)
..|+-+|-.+..||+. ++.+...|+.+++++-..
T Consensus 856 ~~A~~aL~~~~~~~~a---------~~~L~~al~D~d~~Vr~~ 889 (897)
T PRK13800 856 KAAVLALTRWPGDPAA---------RDALTTALTDSDADVRAY 889 (897)
T ss_pred HHHHHHHhccCCCHHH---------HHHHHHHHhCCCHHHHHH
Confidence 7777777776555554 334455666666654433
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.60 E-value=39 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.7
Q ss_pred cchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHh
Q 033071 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK 102 (128)
Q Consensus 63 ~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~ 102 (128)
.++++-|.++++++.++..+|.=+|-|++ +..+..++.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~--k~~~~~~l~ 64 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNIS--KVARGEILP 64 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 57888999999999999999999999997 455566664
No 78
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=45.97 E-value=91 Score=23.49 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcch-hHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHH
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVL-ELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vi-dlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I 100 (128)
|+..+..-.+ .++...|++++--|....-. ++++-=+.+ .-|+.+|.++|+.+..+|.-.+..+..-. +...|
T Consensus 26 ~~~~l~~~L~-D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i 99 (178)
T PF12717_consen 26 YLPNLYKCLR-DEDPLVRKTALLVLSHLILE----DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKR-NPNII 99 (178)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHc----CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-cchHH
Confidence 6667777774 45678888888777776432 333333444 77888999999999999999999887652 33334
Q ss_pred HhcCChhhHHhhhcCCC
Q 033071 101 TKSGGIPLIIECLSSPV 117 (128)
Q Consensus 101 ~~~ggi~~i~~~LsS~~ 117 (128)
.. .++.++.-|++..
T Consensus 100 ~~--~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 100 YN--NFPELISSLNNCY 114 (178)
T ss_pred HH--HHHHHHHHHhCcc
Confidence 33 3666666666543
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=43.41 E-value=83 Score=28.65 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHhhcCC--hHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC-cHHHHHHHhhhhhhcccCh---hhHH
Q 033071 25 ELVSQFQNST--DEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDP---ANAA 98 (128)
Q Consensus 25 ~LV~Efq~t~--~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~-n~~l~efaiggLcNlclDp---~n~~ 98 (128)
-|+..+. ++ +--.+=|.+--.|=.+|+|-=-++++.++.|....+++.+. .|++..-.++.+-|||--+ +-++
T Consensus 202 ~l~~~l~-s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k 280 (442)
T KOG2759|consen 202 LLIRILA-STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKK 280 (442)
T ss_pred hhHHHHh-ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHH
Confidence 4555553 22 22344567888899999999999999999999999999986 8999999999999998554 3333
Q ss_pred ----HHHhcCChhhHHhhhcC
Q 033071 99 ----IITKSGGIPLIIECLSS 115 (128)
Q Consensus 99 ----~I~~~ggi~~i~~~LsS 115 (128)
+.+. ++++..++.|+.
T Consensus 281 ~~~~~mv~-~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 281 DIASQMVL-CKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHHh-cCchHHHHHHHh
Confidence 3333 678888777764
No 80
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=39.07 E-value=12 Score=30.14 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=32.1
Q ss_pred HHHhhhhhhcccChhhHHHHHhcC--ChhhHHhhhcCCChhhhhh
Q 033071 81 EFGVGGICNASVDPANAAIITKSG--GIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 81 efaiggLcNlclDp~n~~~I~~~g--gi~~i~~~LsS~~e~tVl~ 123 (128)
-+||||| |++|...+.+.| ||..+....++.+...+..
T Consensus 161 ~vAIGGi-----~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~ 200 (211)
T COG0352 161 VVAIGGI-----NLENVPEVLEAGADGVAVVSAITSAADPAAAAK 200 (211)
T ss_pred EEEEcCC-----CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHH
Confidence 5789995 899999999988 9999999999888766543
No 81
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=38.99 E-value=1.3e+02 Score=28.51 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=78.2
Q ss_pred HHHhhCCCCCChHHHHHHHHHHhhcCChHHHH---------------------------------HHHHHHhhhhccCCC
Q 033071 8 QEERTGRSGTPRLQYLQELVSQFQNSTDEERK---------------------------------EKIVANLANFAYDPY 54 (128)
Q Consensus 8 l~~Rtg~~g~~R~eyLq~LV~Efq~t~~~eak---------------------------------eqvlAnLaNFAyDP~ 54 (128)
++=|.|+....|+..| .|||.|-..++..++ .-.++-||=|..||+
T Consensus 17 ~~L~~~k~D~e~fAaL-llVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAAL-LLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHhcccChHHHHHHH-HHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 3456666777777666 566666555444443 456788999999999
Q ss_pred cHHHHHhhcchhHHHHhhcCC-------cHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhh
Q 033071 55 NYTFLRQLNVLELFLDCITEP-------NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC 112 (128)
Q Consensus 55 N~~~Lrql~vidlFld~L~~~-------n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~ 112 (128)
=-.|=.=++.|++.+..++.. |--+++-+--.|--.+--|......+..|||+.|.+.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~ 160 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQM 160 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHH
Confidence 888877789999999999753 3458888777777777678888899999999988765
No 82
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=37.95 E-value=23 Score=20.23 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhh
Q 033071 5 NQRQEERTGRSGTPRLQYLQELVSQFQ 31 (128)
Q Consensus 5 ~~~l~~Rtg~~g~~R~eyLq~LV~Efq 31 (128)
.+.|++-..+.|+.|-+++..++.+|-
T Consensus 11 ~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 11 YERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 355666666777999999999999883
No 83
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=37.69 E-value=54 Score=20.64 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHH
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVA 44 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlA 44 (128)
+|||+..+=.|=.+.+.+ |+|.+-
T Consensus 4 ~eYLKNVll~fl~~~e~~-r~~ll~ 27 (46)
T smart00755 4 FEYLKNVLLQFLTLRESE-RETLLK 27 (46)
T ss_pred HHHHHHHHHHHhccCcch-HHHHHH
Confidence 689999999997777765 666543
No 84
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.15 E-value=1.7e+02 Score=27.90 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhc
Q 033071 25 ELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA 90 (128)
Q Consensus 25 ~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNl 90 (128)
.|+... ..++...|..++..|+.+. .-.+++.++..|.++++.+..-|+.+|..+
T Consensus 625 ~L~~~L-~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 625 ELAPYL-ADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 444333 4667778888888888764 234677778888888888888887777665
No 85
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=35.98 E-value=48 Score=23.26 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhcc
Q 033071 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAY 51 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAy 51 (128)
||.+-|-.||.+|-.+++ +.+++++.-.--.+-
T Consensus 1 G~i~~lD~la~~f~~~~~-~~~~~i~~~~~~~~~ 33 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASD-DEREEILEEAKAAAE 33 (95)
T ss_dssp T--HHHHHHHHHHHHS-C-HHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHH
Confidence 578889999999988876 777777765544443
No 86
>PF06595 BDV_P24: Borna disease virus P24 protein; InterPro: IPR009517 Borna disease virus (BDV) is a non-cytolytic, neurotropic RNA virus that has a broad host range in warm-blooded animals. BDV is an enveloped virus, non-segmented, negative-stranded RNA genome and has an organisation characteristic of a member of Bornaviridae in the order of Mononegavirale. This family consists of several BDV P24 (phosphoprotein 24) proteins. They are essential components of the RNA polymerase transcription and replication complex. P24 is encoded by open reading frame II (ORF-II) and undergoes high rates of mutation in humans. They bind amphoterin-HMGB1, a multifunctional protein, directly may cause deleterious effects in cellular functions by its interference with HMGB1 []. Horse and human P24 have no species-specific amino acid residues, suggesting that the two viruses related [, ]. Numerous interactions of the immune system with the central nervous system have been described. Mood and psychotic disorders, such as severe depression and schizophrenia, are both heterogeneous disorders regarding clinical symptomatology, the acuity of symptoms, the clinical course and the treatment response []. BDV p24 RNA has been detected in the peripheral blood mononuclear cells (PBMCs) of psychiatric patients with such conditions []. Some studies find a significant difference in the prevalence of BDV p24 RNA in patients with mood disorders and schizophrenia [], whilst others find no difference between patients and control groups []. Consequently, debate about the role of BDV in psychiatric diseases remains alive.
Probab=35.08 E-value=23 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=25.6
Q ss_pred HHhhCCCCCChHHHHHHHHHHhhcCChHHHH
Q 033071 9 EERTGRSGTPRLQYLQELVSQFQNSTDEERK 39 (128)
Q Consensus 9 ~~Rtg~~g~~R~eyLq~LV~Efq~t~~~eak 39 (128)
.+|||++-+.--+-+++||+|.-+++..|+-
T Consensus 61 ~~~TGREqLSndeLikqLvtElae~~mieaE 91 (201)
T PF06595_consen 61 DQRTGREQLSNDELIKQLVTELAENSMIEAE 91 (201)
T ss_pred cccchHHhhchHHHHHHHHHHHhhccchhHH
Confidence 3578888888889999999999888777654
No 87
>PHA00099 minor capsid protein
Probab=34.70 E-value=69 Score=25.04 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=34.3
Q ss_pred HHHHHHhhCCCCC--ChHHHHHHH--HHHhhc-CChHHHHHHHHHHhhh-------hccCCCcHHHHHhhcch
Q 033071 5 NQRQEERTGRSGT--PRLQYLQEL--VSQFQN-STDEERKEKIVANLAN-------FAYDPYNYTFLRQLNVL 65 (128)
Q Consensus 5 ~~~l~~Rtg~~g~--~R~eyLq~L--V~Efq~-t~~~eakeqvlAnLaN-------FAyDP~N~~~Lrql~vi 65 (128)
-.++.+|+|.+|. .=.+|-.+| |.|=|. -++.-|| |-.+.+| |--||.||+--..||.+
T Consensus 44 l~h~~rRq~~ygdc~sp~D~qeAl~~V~~~qeaFdsLPA~--iR~~F~NdP~eml~~L~dp~NydEa~~LGl~ 114 (147)
T PHA00099 44 LEHVERRQPRYGDCMSPMDYQEALNVVIEAQEAFDSLPAK--IRERFGNDPEEMLDFLSDPENYDEAKALGLV 114 (147)
T ss_pred hhhhhhhCCccccCCCchhHHHHHHHHHHHHHHHHhhhHH--HHHHhCCCHHHHHHHHcChhhHHHHHhccee
Confidence 4678999999996 344554444 332221 1222222 2234444 67788888888888765
No 88
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=33.43 E-value=1.2e+02 Score=29.30 Aligned_cols=50 Identities=8% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC
Q 033071 44 ANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD 93 (128)
Q Consensus 44 AnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD 93 (128)
|.||=+-+.-.+..+..++|.+|+.-+++.+++|.++..|..+|-+++.+
T Consensus 147 Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 147 AALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 34444445555567889999999999999999999999999999998877
No 89
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=76 Score=31.64 Aligned_cols=97 Identities=12% Similarity=0.192 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchh---HHHHhhcCCcHHHHHHHhhhhhhcc--cChh
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLE---LFLDCITEPNEKLVEFGVGGICNAS--VDPA 95 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vid---lFld~L~~~n~~l~efaiggLcNlc--lDp~ 95 (128)
.-+.-|+...++-.=.+.-||+|-.|-=..-+ -+...|+ +|.|- .|+|.++- ..+..|++--.|+| +-|+
T Consensus 254 ~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~~AiL~-AG~l~a~LsylDFFSi---~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 254 HAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HPKAILQ-AGALSAVLSYLDFFSI---HAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-ccHHHHh-cccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCc
Confidence 34566666676667788889999998765554 2334443 34433 45666654 47788999999999 5599
Q ss_pred hHHHHHhcCChhhHHhhhcCCChhhhhhc
Q 033071 96 NAAIITKSGGIPLIIECLSSPVRNTVNQR 124 (128)
Q Consensus 96 n~~~I~~~ggi~~i~~~LsS~~e~tVl~a 124 (128)
.-.+|.+. +|++..+|+..+.-.|.++
T Consensus 329 ~f~~v~ea--lPlL~~lLs~~D~k~ies~ 355 (1051)
T KOG0168|consen 329 EFHFVMEA--LPLLTPLLSYQDKKPIESV 355 (1051)
T ss_pred cchHHHHH--HHHHHHHHhhccchhHHHH
Confidence 99999976 9999999999888766654
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=32.77 E-value=49 Score=24.94 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=43.2
Q ss_pred hhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCCh-hhHHhhhcCCChhhhhhcc
Q 033071 65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGI-PLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 65 idlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi-~~i~~~LsS~~e~tVl~a~ 125 (128)
++.+..+|.++++.+.+.|+=.|..|... ++|.-.|.+ ..+..||.-+++++...|.
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~ 84 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILE----DMIKVKGQLFSRILKLLVDENPEIRSLAR 84 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CceeehhhhhHHHHHHHcCCCHHHHHHHH
Confidence 45677888999999999999999988642 444444555 7888899888888776553
No 91
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.66 E-value=27 Score=31.36 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred CcHHHHHhhcchhHHHHhhcCCcHH-HH---HHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 54 YNYTFLRQLNVLELFLDCITEPNEK-LV---EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 54 ~N~~~Lrql~vidlFld~L~~~n~~-l~---efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
.||..+|+| ...|...+++ .+ -+-||.+. -.-|+....+.+.||=..|.++++++++++--.|+
T Consensus 353 dny~i~k~L------~~~lq~n~~nt~i~vAc~Di~~~V--r~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl 420 (432)
T COG5231 353 DNYEIVKVL------KKYLQSNNPNTWICVACSDIFQLV--RASPEINAVLSKYGVKEIIMNLINHDDDDVKFEAL 420 (432)
T ss_pred hhHHHHHHH------HHHHhcCCCCceEeeeHhhHHHHH--HhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHH
Confidence 477777765 4667777665 22 22223322 24599999999999999999999999999887776
No 92
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.23 E-value=1.4e+02 Score=22.31 Aligned_cols=70 Identities=11% Similarity=0.229 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhh
Q 033071 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGI 87 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFA-yDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggL 87 (128)
+.++-|+.|+.-...+++....--+.--|.-|+ +-|.=+..+.++|+-+.-..+++++|+.+...|+=++
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467788899988854443333333333355554 2388899999999999999999999999999887543
No 93
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=21 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=23.4
Q ss_pred hccCCCcHHHHHhhcchhHHHHhhc
Q 033071 49 FAYDPYNYTFLRQLNVLELFLDCIT 73 (128)
Q Consensus 49 FAyDP~N~~~Lrql~vidlFld~L~ 73 (128)
+|-+|.||+....|+.++.|..+|.
T Consensus 102 vAaNPVNYGkp~kLss~EAlaAaLY 126 (179)
T COG2042 102 VAANPVNYGKPFKLSSAEALAAALY 126 (179)
T ss_pred hhcCCcccCCcchhchHHHHHHHHH
Confidence 6889999999999999999999885
No 94
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=30.96 E-value=1.3e+02 Score=22.50 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhc-CCcHH-HHHHHhhhhhh
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCIT-EPNEK-LVEFGVGGICN 89 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~-~~n~~-l~efaiggLcN 89 (128)
.++.++..-++-++.+..+.++..|-+-|..-.+.--.=.-+.+++.-+.++ ++|+. +...|+-|||=
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4444444443446667778888899999988777766666688888889994 66787 88999999883
No 95
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=34 Score=31.10 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHhhhhccC-CCcHHHHHhhcchhHHHHh--hcCCcHHHHHHHhhhhhhcccC-hhhHHHHHhc
Q 033071 42 IVANLANFAYD-PYNYTFLRQLNVLELFLDC--ITEPNEKLVEFGVGGICNASVD-PANAAIITKS 103 (128)
Q Consensus 42 vlAnLaNFAyD-P~N~~~Lrql~vidlFld~--L~~~n~~l~efaiggLcNlclD-p~n~~~I~~~ 103 (128)
|..=+||..|- |.|-+..|+|+-+.|-|+- +++.||.+.|..|-++=||-=| -+|+++|-+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 55566777786 9999999999999998874 5677999999999999999766 7888888643
No 96
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.05 E-value=36 Score=31.64 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=49.9
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHh--hhhccCCCcHHHH------HhhcchhHHHHhhcCC
Q 033071 6 QRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANL--ANFAYDPYNYTFL------RQLNVLELFLDCITEP 75 (128)
Q Consensus 6 ~~l~~Rtg~~g~~R~eyLq~LV~Efq~t~~~eakeqvlAnL--aNFAyDP~N~~~L------rql~vidlFld~L~~~ 75 (128)
+.+-.-.|+.|++|.+.|+.|=..++-+.....+-+|+-+| +-|-|+|....|| +-++-+.-.+++|.+.
T Consensus 222 ~eIv~sRGKK~TDr~eqI~~L~~L~~ia~~~~~~i~Il~~lIsa~FD~~~~~~~~M~~~~W~~~~~~i~~Ll~lL~~n 299 (595)
T PF05470_consen 222 KEIVESRGKKGTDRQEQIRQLEKLLEIAKTPYQKIEILLHLISARFDYNSSISDYMPIEQWKKCLNNINELLDLLEEN 299 (595)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHcCcccchhHHHhhhHHHHccCCccccCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 44556779999999999999877776655555577777776 5688888555554 3446677777877643
No 97
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=29.92 E-value=1.1e+02 Score=22.70 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=40.2
Q ss_pred CCCcHHHHHHhhCCCCC----ChHHHHHH---HHHHhh-------cCChHHH---HHHHHHHhhhhccCCCcHHH
Q 033071 1 MFTNNQRQEERTGRSGT----PRLQYLQE---LVSQFQ-------NSTDEER---KEKIVANLANFAYDPYNYTF 58 (128)
Q Consensus 1 Mfss~~~l~~Rtg~~g~----~R~eyLq~---LV~Efq-------~t~~~ea---keqvlAnLaNFAyDP~N~~~ 58 (128)
||...+.|-+-+++.|. ++..||.. |++.|+ =+.+.+| ++|+-+-+..|-|.|.|+.-
T Consensus 17 if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~~~~l~~ 91 (108)
T PF08855_consen 17 IFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYTPQDLSQ 91 (108)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCCcchHHH
Confidence 35566777777877665 56667654 444443 2455555 58999999999999988753
No 98
>PF11842 DUF3362: Domain of unknown function (DUF3362); InterPro: IPR024560 This domain tends to occur to the C terminus of a radical SAM domain (PF04055 from PFAM) in members of the uncharacterised protein family UPF0313. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=29.39 E-value=27 Score=27.31 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=11.9
Q ss_pred hhcc-CCCcHHHHHhh
Q 033071 48 NFAY-DPYNYTFLRQL 62 (128)
Q Consensus 48 NFAy-DP~N~~~Lrql 62 (128)
=+-| ||.||+.+|++
T Consensus 50 ll~Y~~PeN~~lvreA 65 (150)
T PF11842_consen 50 LLRYHDPENWPLVREA 65 (150)
T ss_pred HHhhcChhhHHHHHHH
Confidence 3556 89999998875
No 99
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=28.44 E-value=92 Score=24.67 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHh---hcchhHHHHhhc
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ---LNVLELFLDCIT 73 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrq---l~vidlFld~L~ 73 (128)
-|+.|+.-. ...+...|.=|++-+-|+++|-..+++|-. .++++-.|--|.
T Consensus 104 ~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 104 PLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 467777755 444999999999999999999999999877 344444443333
No 100
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=28.13 E-value=66 Score=25.75 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred cchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHh--cCChhhHHhhhcCCChhhhhhcc
Q 033071 63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK--SGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 63 ~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~--~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
..+++|.|-|.|-.+-..-.|.-|+--+.-- ...+.|+- .-=|.+|.+.|.+.+++++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L 101 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATL 101 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3589999999986554444455554433211 11222221 12256777889999999877654
No 101
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.41 E-value=1.8e+02 Score=27.18 Aligned_cols=67 Identities=10% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcH---HHHHHHh------------h
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE---KLVEFGV------------G 85 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~---~l~efai------------g 85 (128)
+.|-.+.|-. +-.+...|.|++.+|..|.-| |-+++. +|.|+++.+|.++++ .+|..++ +
T Consensus 59 ~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~--~~~~v~--kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 59 EAINAQLDLC-EDEDVQIRKQAIKGLPQLCKD--NPEHVS--KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp HHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T----T-HH--HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHhHHHHHHh--HHHHHh--HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4566777777 445567899999999999998 333333 678999999998764 4555555 8
Q ss_pred hhhhccc
Q 033071 86 GICNASV 92 (128)
Q Consensus 86 gLcNlcl 92 (128)
|||+-+.
T Consensus 134 ~lf~~i~ 140 (556)
T PF05918_consen 134 GLFSQIE 140 (556)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 102
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.79 E-value=1.4e+02 Score=21.91 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCcH--HHHHhhcchhHHHHhhcCC---------cHHHHHHHhhhhhhcccChhhHHHHHh-cCChhhHHhhhcCCChh
Q 033071 52 DPYNY--TFLRQLNVLELFLDCITEP---------NEKLVEFGVGGICNASVDPANAAIITK-SGGIPLIIECLSSPVRN 119 (128)
Q Consensus 52 DP~N~--~~Lrql~vidlFld~L~~~---------n~~l~efaiggLcNlclDp~n~~~I~~-~ggi~~i~~~LsS~~e~ 119 (128)
.|..| .|+ ..+-++.++++|..- ...+....+..|=-++-.+...+.++. .+.+..|+.||.|++..
T Consensus 95 ~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~ 173 (187)
T PF06371_consen 95 NPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIK 173 (187)
T ss_dssp S-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHH
T ss_pred CCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHH
Confidence 46666 444 468888888888532 224444455555555555666677775 78899999999999987
Q ss_pred hhhhc
Q 033071 120 TVNQR 124 (128)
Q Consensus 120 tVl~a 124 (128)
|-..|
T Consensus 174 ~r~~~ 178 (187)
T PF06371_consen 174 TRKLA 178 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 103
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=26.57 E-value=1.1e+02 Score=28.99 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=51.1
Q ss_pred hhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcccCh
Q 033071 30 FQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDP 94 (128)
Q Consensus 30 fq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlclDp 94 (128)
++.......+-.+. .|+|...+ |.|...+..-+.+++|+.++.. .++.+.-..+|.+.|++.=.
T Consensus 480 ~~~~~~~~~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~ 545 (699)
T KOG3665|consen 480 LRKIYWCDDVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVL 545 (699)
T ss_pred hhccchhhHHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHh
Confidence 43434444343333 89999998 9999999999999999999986 67889999999999998544
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=26.49 E-value=74 Score=24.10 Aligned_cols=86 Identities=10% Similarity=0.119 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHhhhhccCC---CcH----HHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccC--hhhHHHHHhcC
Q 033071 34 TDEERKEKIVANLANFAYDP---YNY----TFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAIITKSG 104 (128)
Q Consensus 34 ~~~eakeqvlAnLaNFAyDP---~N~----~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclD--p~n~~~I~~~g 104 (128)
.+=+.|.+.+-.|..+.-.. .+. +.|+ .+++.+...+.+.+-.++..|...+..++.- ..-..++-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~-- 94 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI-- 94 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH--
Confidence 33355555555555443222 222 2333 6778899999988888888888777777532 333333332
Q ss_pred ChhhHHhhhcCCChhhhhh
Q 033071 105 GIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 105 gi~~i~~~LsS~~e~tVl~ 123 (128)
-+|.++.++.+++.-+.-+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~ 113 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREA 113 (228)
T ss_dssp HHHHHHHGGG---HHHHHH
T ss_pred HHHHHHHHHccccHHHHHH
Confidence 2678888888877654433
No 105
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=26.47 E-value=1.7e+02 Score=23.96 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred HHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcc-cChhhHHHH-------HhcCChhhHHhh
Q 033071 42 IVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNAS-VDPANAAII-------TKSGGIPLIIEC 112 (128)
Q Consensus 42 vlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlc-lDp~n~~~I-------~~~ggi~~i~~~ 112 (128)
.+..=.+|-||| |..||++..|=..... +.+.=.+-=--+||+.+ .||+.-... ...-++.-|...
T Consensus 37 Ll~~n~~f~yD~-----lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 111 (206)
T PLN03060 37 LMRYNATYKYDP-----IFALGFVTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADF 111 (206)
T ss_pred HHHhccCceeCc-----hHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 455557899998 5889999998776655 23333344446899987 787653332 234556677777
Q ss_pred hcCC
Q 033071 113 LSSP 116 (128)
Q Consensus 113 LsS~ 116 (128)
|+..
T Consensus 112 l~~~ 115 (206)
T PLN03060 112 NSGD 115 (206)
T ss_pred Hhcc
Confidence 7654
No 106
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=25.95 E-value=58 Score=25.69 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=55.3
Q ss_pred cCChHHHHHHH----HHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC-cHHHHHHHhhhhhhcccChhhH------HHH
Q 033071 32 NSTDEERKEKI----VANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDPANA------AII 100 (128)
Q Consensus 32 ~t~~~eakeqv----lAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~-n~~l~efaiggLcNlclDp~n~------~~I 100 (128)
.|++++.|+|. +..|.|| |+. =||-+++-|+.+ -+.|+.+=--|+-+..--+... +.+
T Consensus 65 ~t~~q~vK~~a~~~v~~vL~~i----------k~a-dI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~ 133 (152)
T KOG3380|consen 65 GTKDQEVKDRALNVVLKVLTSI----------KQA-DIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKL 133 (152)
T ss_pred CCccHHHHHHHHHHHHHHHHHH----------HHH-hHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 57788888773 4455554 333 367888888764 5788888888888766556555 788
Q ss_pred HhcCChhhHHhhhcCCC
Q 033071 101 TKSGGIPLIIECLSSPV 117 (128)
Q Consensus 101 ~~~ggi~~i~~~LsS~~ 117 (128)
++.+|+-+|+.|||+..
T Consensus 134 ~~~~GvG~IvRvLs~r~ 150 (152)
T KOG3380|consen 134 VAKSGVGCIVRVLSDRQ 150 (152)
T ss_pred HHhcCCceEEEeecCCc
Confidence 99999999999999864
No 107
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=25.92 E-value=1.2e+02 Score=25.53 Aligned_cols=71 Identities=14% Similarity=0.322 Sum_probs=45.1
Q ss_pred hhccCCCcHHHHHhhcchhHHHHhhc--C----CcHHHHHHHhhhhhhcc-cChhhHHHHHhcCChhhHHhhhcCCChhh
Q 033071 48 NFAYDPYNYTFLRQLNVLELFLDCIT--E----PNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNT 120 (128)
Q Consensus 48 NFAyDP~N~~~Lrql~vidlFld~L~--~----~n~~l~efaiggLcNlc-lDp~n~~~I~~~ggi~~i~~~LsS~~e~t 120 (128)
+|-|+.. .|=+..++..++... + .++.++..|+.-|==|| +.|..|...-++.++..++.+|+..+.-.
T Consensus 74 ~Fe~Nl~----~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~ 149 (257)
T PF08045_consen 74 GFEWNLA----SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPA 149 (257)
T ss_pred Hhhcchh----hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCch
Confidence 4555544 444455566666554 1 25566666444444444 56889999999999999999996655444
Q ss_pred hh
Q 033071 121 VN 122 (128)
Q Consensus 121 Vl 122 (128)
|.
T Consensus 150 i~ 151 (257)
T PF08045_consen 150 IQ 151 (257)
T ss_pred HH
Confidence 33
No 108
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=25.90 E-value=46 Score=22.53 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=17.5
Q ss_pred hhhhhhcccChhhHHHHHh
Q 033071 84 VGGICNASVDPANAAIITK 102 (128)
Q Consensus 84 iggLcNlclDp~n~~~I~~ 102 (128)
.||||-=|+-|+...+|.+
T Consensus 37 lG~IC~~CitpEE~~~I~e 55 (60)
T PF10892_consen 37 LGGICGDCITPEEDREILE 55 (60)
T ss_pred HcchhhccCCHHHHHHHHH
Confidence 5899999999999999986
No 109
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=25.89 E-value=2.2e+02 Score=19.37 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC-cHHHHHHHhhhhhhcccChhhHHHHHhc
Q 033071 39 KEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKS 103 (128)
Q Consensus 39 keqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~-n~~l~efaiggLcNlclDp~n~~~I~~~ 103 (128)
+++.+=.++|.+.-|.-.++|.+.++++.++.+-++. .-.+.--|.-+|+=++--++-.+.+.+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 4566778999999999999999999999999998754 4445555555555555555555555443
No 110
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=25.71 E-value=47 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHhhhhccCCCcHHHHHhh
Q 033071 34 TDEERKEKIVANLANFAYDPYNYTFLRQL 62 (128)
Q Consensus 34 ~~~eakeqvlAnLaNFAyDP~N~~~Lrql 62 (128)
+.+|+|+++.+-|..+.||..+|-++-..
T Consensus 36 s~eea~~~a~~~l~~~r~~~~gY~fi~d~ 64 (95)
T PF08269_consen 36 SEEEAQQQAREALRALRYGGDGYFFIYDM 64 (95)
T ss_dssp ---TTHHHHHHHHHH--SBTTB--EEE-T
T ss_pred cHHHHHHHHHHHHhccccCCCCeEEEEeC
Confidence 57899999999999999998888766544
No 111
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=25.71 E-value=62 Score=24.86 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCCcHHHHHhhcchhHHHHhhcCCc------------------HHHHHHHhhhhhhcccC-hhhHHHHHhcCChh
Q 033071 52 DPYNYTFLRQLNVLELFLDCITEPN------------------EKLVEFGVGGICNASVD-PANAAIITKSGGIP 107 (128)
Q Consensus 52 DP~N~~~Lrql~vidlFld~L~~~n------------------~~l~efaiggLcNlclD-p~n~~~I~~~ggi~ 107 (128)
++.+-..||.++++++-+++|..+- ..+...+--=|+.+|-+ ++|+.++.++ ++
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~ 104 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LD 104 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--Hh
Confidence 3456678999999999999997541 35666777778888877 9999999876 55
No 112
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=25.60 E-value=28 Score=29.28 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=17.6
Q ss_pred hhcccChhhHHHHHhcCChh
Q 033071 88 CNASVDPANAAIITKSGGIP 107 (128)
Q Consensus 88 cNlclDp~n~~~I~~~ggi~ 107 (128)
+|...||+.++.++++||++
T Consensus 185 fN~~~DPeAA~iV~~s~~~~ 204 (326)
T PTZ00313 185 WNIYWDPPAAKTVLMCPHIR 204 (326)
T ss_pred hhhhcCHHHHHHHHhCCCCC
Confidence 48889999999999988775
No 113
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=24.73 E-value=35 Score=29.17 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=17.0
Q ss_pred HHHHhhcCCcHHHHHHHhh
Q 033071 67 LFLDCITEPNEKLVEFGVG 85 (128)
Q Consensus 67 lFld~L~~~n~~l~efaig 85 (128)
+|||.|...||+|++.|+.
T Consensus 1 ~~~~~~~~~n~~~~~~a~~ 19 (382)
T cd06811 1 MFLEALLKRNPALIEAALT 19 (382)
T ss_pred CchHHHhhhCHHHHHHHHH
Confidence 5999999999999998874
No 114
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=1.3e+02 Score=28.89 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhh--c------chhHHHHhhcCCcHHHHHHHhhhhhhcccChhhH
Q 033071 26 LVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQL--N------VLELFLDCITEPNEKLVEFGVGGICNASVDPANA 97 (128)
Q Consensus 26 LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql--~------vidlFld~L~~~n~~l~efaiggLcNlclDp~n~ 97 (128)
+|-+|-+-..-..++|++.-|.||.||..-.+.-... + ....|++.+.+.||-..+-++=-|.|++.--++.
T Consensus 520 kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l 599 (743)
T COG5369 520 KVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTL 599 (743)
T ss_pred HHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchH
Confidence 5666766666788999999999999985432111110 1 2346788899999999998888888886444444
Q ss_pred HHHH
Q 033071 98 AIIT 101 (128)
Q Consensus 98 ~~I~ 101 (128)
++++
T Consensus 600 ~~~V 603 (743)
T COG5369 600 DYIV 603 (743)
T ss_pred HHHH
Confidence 4444
No 115
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=24.51 E-value=4.2e+02 Score=22.50 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHhh----cchhHHHHhhcCC-cHHHHHHHhhhhhhcc--cChhhHHH--HHhcCChhhHHhhhcC
Q 033071 58 FLRQL----NVLELFLDCITEP-NEKLVEFGVGGICNAS--VDPANAAI--ITKSGGIPLIIECLSS 115 (128)
Q Consensus 58 ~Lrql----~vidlFld~L~~~-n~~l~efaiggLcNlc--lDp~n~~~--I~~~ggi~~i~~~LsS 115 (128)
.++.+ .++..+.+++... .+.-..+++++.+-.+ -||+..+. +++..||...+.-.+.
T Consensus 296 ~~~Kl~~~~R~~~~~~~~~~~g~~~~~l~~~~A~~~~~~~~~D~~~~~l~~~~~~~~~~~~~~~~~~ 362 (381)
T PRK02318 296 PLRKLGANDRLIKPLLGLKEYGLPHSNLLKGIAAALHFDDENDPQAVELQALIAEKGLEAALAEITG 362 (381)
T ss_pred hhhcCCCCceeHHHHHHHHHcCCChHHHHHHHHHHHHhCCCCChHHHHHHHHHHhcCHHHHHHHHhC
Confidence 45677 4689999999875 4677778887776555 57765543 4556678877665443
No 116
>PHA01623 hypothetical protein
Probab=24.35 E-value=78 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhhc
Q 033071 5 NQRQEERTGRSGTPRLQYLQELVSQFQN 32 (128)
Q Consensus 5 ~~~l~~Rtg~~g~~R~eyLq~LV~Efq~ 32 (128)
.++|.+-.-..|+.|-+.|+..|.+|-.
T Consensus 25 ~~~Ld~y~~~~g~~rSe~IreAI~~yL~ 52 (56)
T PHA01623 25 KTRLKVYCAKNNLQLTQAIEEAIKEYLQ 52 (56)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677888888999999999999999954
No 117
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=24.21 E-value=1e+02 Score=29.49 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=55.1
Q ss_pred CCCcHHHHHhhcchhHHHHhhcCCcHHHHH-HHhhhhhhc--ccChhhHHHHHhcCChhhHHhhhcCCChhhhhh
Q 033071 52 DPYNYTFLRQLNVLELFLDCITEPNEKLVE-FGVGGICNA--SVDPANAAIITKSGGIPLIIECLSSPVRNTVNQ 123 (128)
Q Consensus 52 DP~N~~~Lrql~vidlFld~L~~~n~~l~e-faiggLcNl--clDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~ 123 (128)
.|.|..+.=.+|++++.+..++.++...-. .+...+.|- +=+......+++++-++.+.++||++++.-|+.
T Consensus 40 ~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le 114 (678)
T KOG1293|consen 40 FTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLE 114 (678)
T ss_pred CCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHH
Confidence 456666888999999999998876543222 355566665 678899999999999999999999999554443
No 118
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=23.55 E-value=46 Score=26.29 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=47.0
Q ss_pred hCCCCCChHHHHHHHHHHhhcC-------ChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC
Q 033071 12 TGRSGTPRLQYLQELVSQFQNS-------TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITE 74 (128)
Q Consensus 12 tg~~g~~R~eyLq~LV~Efq~t-------~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~ 74 (128)
+|.+|++.-=+..+.+.+.-.. +-+|.++.+..+...|.+|+.-|..--++.++|.|......
T Consensus 29 ~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~ 98 (260)
T COG0467 29 TGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGL 98 (260)
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEcccccccc
Confidence 4677777654444444443322 55688899999999999999988877888999999887764
No 119
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=23.49 E-value=1.8e+02 Score=18.98 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhh
Q 033071 19 RLQYLQELVSQFQNSTDEERKEKIVANLAN 48 (128)
Q Consensus 19 R~eyLq~LV~Efq~t~~~eakeqvlAnLaN 48 (128)
|-..++.++......++++.|+.+++.+.+
T Consensus 25 r~~lv~nia~~l~~v~~~~i~~r~l~~f~~ 54 (68)
T PF06628_consen 25 RERLVENIAGHLSGVSDEEIQERVLAYFYK 54 (68)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 455666677777666666677777766654
No 120
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.36 E-value=56 Score=29.75 Aligned_cols=92 Identities=20% Similarity=0.391 Sum_probs=60.7
Q ss_pred HHHHHhhc-CChHHHHHHHHHHhhhhccCC-----------------CcHHHHHhhcchhHHHHhhcCCcH-HHH---HH
Q 033071 25 ELVSQFQN-STDEERKEKIVANLANFAYDP-----------------YNYTFLRQLNVLELFLDCITEPNE-KLV---EF 82 (128)
Q Consensus 25 ~LV~Efq~-t~~~eakeqvlAnLaNFAyDP-----------------~N~~~Lrql~vidlFld~L~~~n~-~l~---ef 82 (128)
.|...+|+ |+-+|.+..+.-. -+-..| .||+.|| +++.+|..+++ ..+ -|
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG--~L~WSP~Hk~e~FW~eNa~rlnennyellk------iL~~lLe~s~Dp~iL~VAc~ 389 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSG--RLEWSPVHKSEKFWRENADRLNENNYELLK------ILIKLLETSNDPIILCVACH 389 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhC--CcCCCccccccchHHHhHHHHhhccHHHHH------HHHHHHhcCCCCceeehhhh
Confidence 35555666 4445666665432 233333 4566555 45788888774 332 23
Q ss_pred HhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCChhhhhhccc
Q 033071 83 GVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNQRFL 126 (128)
Q Consensus 83 aiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~t 126 (128)
-||-.. -.-|+.+..|.+.||=..|.++|+.+++++--+||.
T Consensus 390 DIge~V--r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 390 DIGEYV--RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred hHHHHH--HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 333332 245999999999999999999999999999888863
No 121
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=23.23 E-value=34 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhhh
Q 033071 25 ELVSQFQNSTDEERKEKIVANLANF 49 (128)
Q Consensus 25 ~LV~Efq~t~~~eakeqvlAnLaNF 49 (128)
.||||||+|+. .|.+|+..|.+=
T Consensus 382 iLIDEfQDT~~--~Q~~Il~~l~~~ 404 (1139)
T COG1074 382 ILIDEFQDTDP--QQWRILSRLFAG 404 (1139)
T ss_pred EEeeccccCCH--HHHHHHHHHHhc
Confidence 58999999986 478888888764
No 122
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=23.13 E-value=93 Score=29.76 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHhhhcCCCh
Q 033071 68 FLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVR 118 (128)
Q Consensus 68 Fld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~~LsS~~e 118 (128)
....++++|..-+.-|.--|.-++.||+..+.++...|+..+..+..+...
T Consensus 88 i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~ 138 (713)
T KOG2999|consen 88 IMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV 138 (713)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc
Confidence 356677776555444999999999999999999999999999999877654
No 123
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=22.97 E-value=58 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.0
Q ss_pred hhhhhhcccChhhHHHHH
Q 033071 84 VGGICNASVDPANAAIIT 101 (128)
Q Consensus 84 iggLcNlclDp~n~~~I~ 101 (128)
+.||+|+++|+-.|-+..
T Consensus 17 ~iGl~~~~~~l~~KGy~~ 34 (53)
T PF05360_consen 17 LIGLWNAPLDLSEKGYYA 34 (53)
T ss_pred HHHHHhCCCCHHHHHHHH
Confidence 358999999999887765
No 124
>PF13494 DUF4119: Domain of unknown function, B. Theta Gene description (DUF4119)
Probab=22.92 E-value=1.7e+02 Score=21.54 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=39.3
Q ss_pred cHHHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCC
Q 033071 4 NNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDP 53 (128)
Q Consensus 4 s~~~l~~Rtg~~g~~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP 53 (128)
|.+.|.+|+|-.|-.| .|+-.-..-|.+..-.-.+..-|-|||-+-||-
T Consensus 31 s~eElekr~~itgd~~-~y~t~~Lr~f~eg~~~~~~~KkL~~LA~yI~d~ 79 (96)
T PF13494_consen 31 SEEELEKRIGITGDKK-HYFTVYLRKFYEGEFHNSYSKKLKDLAEYIYDW 79 (96)
T ss_pred cHHHHHhhcCCcchhH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHhhc
Confidence 5678999999999777 566666666878877778888899999888874
No 125
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.90 E-value=2.4e+02 Score=27.33 Aligned_cols=74 Identities=11% Similarity=0.216 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcc-cCh
Q 033071 19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDP 94 (128)
Q Consensus 19 R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlc-lDp 94 (128)
+-+|+..=..+--+.++..++.-+..+.|++- -+|-.+-+..+.+|.+-|++.++|+-+|..|+.+|-.+. .+|
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 34555443443335566777888888888764 456688899999999999999999999999999998874 444
No 126
>PF03057 DUF236: Protein of unknown function; InterPro: IPR004296 This entry contains Caenorhabditis proteins of unkown function which contain a common C-terminal domain.
Probab=22.59 E-value=37 Score=26.42 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.0
Q ss_pred ccCCCcHHHHHhhcchhHH
Q 033071 50 AYDPYNYTFLRQLNVLELF 68 (128)
Q Consensus 50 AyDP~N~~~Lrql~vidlF 68 (128)
++|| ||+.|..|+- |+|
T Consensus 94 T~DP-NYQTLAgv~n-DiF 110 (141)
T PF03057_consen 94 THDP-NYQTLAGVGN-DIF 110 (141)
T ss_pred cCCC-chhhhhccCc-ccc
Confidence 4788 9999998876 888
No 127
>PRK13266 Thf1-like protein; Reviewed
Probab=22.48 E-value=2.2e+02 Score=23.62 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=46.5
Q ss_pred HHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcc-cChhhHHH-------HHhcCChhhHHhh
Q 033071 42 IVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNAS-VDPANAAI-------ITKSGGIPLIIEC 112 (128)
Q Consensus 42 vlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlc-lDp~n~~~-------I~~~ggi~~i~~~ 112 (128)
.+..=.+|-||| |..||++..|=..... +.+.=..-=--+||+.+ .||+.-.. .....++..|...
T Consensus 39 Ll~~n~~F~yDp-----lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~ 113 (225)
T PRK13266 39 LLSVNSDFKYDP-----LFALGLVTVFDRFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSW 113 (225)
T ss_pred HHHhccCceeCc-----hHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445557899998 5889999998766654 23333333346899987 78764332 2345667788888
Q ss_pred hcCC
Q 033071 113 LSSP 116 (128)
Q Consensus 113 LsS~ 116 (128)
|+..
T Consensus 114 l~~~ 117 (225)
T PRK13266 114 LTQK 117 (225)
T ss_pred Hhcc
Confidence 8865
No 128
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.40 E-value=5.4e+02 Score=22.67 Aligned_cols=69 Identities=7% Similarity=-0.008 Sum_probs=34.8
Q ss_pred cCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHHHhcCChhhHHh
Q 033071 32 NSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIE 111 (128)
Q Consensus 32 ~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I~~~ggi~~i~~ 111 (128)
++++...+.-+++.|+..--| ..+..+..|.++++.+.+-|+.+|.-+. ....++.++.
T Consensus 127 ~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~ 185 (410)
T TIGR02270 127 AASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRL 185 (410)
T ss_pred cCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHH
Confidence 344445555555555553222 2233444455555666666665555443 1234455556
Q ss_pred hhcCCChhhh
Q 033071 112 CLSSPVRNTV 121 (128)
Q Consensus 112 ~LsS~~e~tV 121 (128)
.++++++++=
T Consensus 186 al~d~~~~VR 195 (410)
T TIGR02270 186 YLRDSDPEVR 195 (410)
T ss_pred HHcCCCHHHH
Confidence 6666666543
No 129
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=22.23 E-value=1.9e+02 Score=24.64 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHhhcC-CcHHHHHHHhhhhhhcc-cChhhHHHHH-hcCChhhHHhhhcCC
Q 033071 67 LFLDCITE-PNEKLVEFGVGGICNAS-VDPANAAIIT-KSGGIPLIIECLSSP 116 (128)
Q Consensus 67 lFld~L~~-~n~~l~efaiggLcNlc-lDp~n~~~I~-~~ggi~~i~~~LsS~ 116 (128)
.++..|.. .++.+.|||+.=|.||| -|......|- +.+.|..++..+-..
T Consensus 176 ~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 176 TLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 33344444 36788999999999998 4555553443 688888888887543
No 130
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=22.02 E-value=3.3e+02 Score=25.68 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-CCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhhhhcccChhhHHHH
Q 033071 22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII 100 (128)
Q Consensus 22 yLq~LV~Efq~t~~~eakeqvlAnLaNFAyD-P~N~~~Lrql~vidlFld~L~~~n~~l~efaiggLcNlclDp~n~~~I 100 (128)
.|..|+.-+-++ .=-.|.-++.-|...+|= |.- --+.--++++...+.|....+.+.+-|++.|-++|-=-+|.+ |
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I 331 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I 331 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H
Confidence 455566555444 223344444444444443 322 223444889999999999999999999999999986555655 5
Q ss_pred HhcCChhhHHhhhcCCC
Q 033071 101 TKSGGIPLIIECLSSPV 117 (128)
Q Consensus 101 ~~~ggi~~i~~~LsS~~ 117 (128)
... +|.+++|++-|+
T Consensus 332 ~~~--ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 332 QKI--IPTLLDALADPS 346 (569)
T ss_pred HHH--HHHHHHHhcCcc
Confidence 544 899999999888
No 131
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=21.62 E-value=1.2e+02 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHhhc--CChHHHHHHHHHHhhhhccCCCc
Q 033071 18 PRLQYLQELVSQFQN--STDEERKEKIVANLANFAYDPYN 55 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~--t~~~eakeqvlAnLaNFAyDP~N 55 (128)
...+++..|+.-+.. ..+.+.|+.++.=+.++++.-.|
T Consensus 77 ~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 77 ADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 446888889888876 57889999999999998887444
No 132
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=21.39 E-value=1.8e+02 Score=21.93 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=14.6
Q ss_pred HHHHHhhCCCCC--ChHHHHHHH
Q 033071 6 QRQEERTGRSGT--PRLQYLQEL 26 (128)
Q Consensus 6 ~~l~~Rtg~~g~--~R~eyLq~L 26 (128)
.++.+|+|.+|. +=.+|-.+|
T Consensus 15 ~~~e~Rs~~yg~c~sp~D~qeAl 37 (114)
T TIGR02763 15 HAFETRSPEYGECPSPLDYQEAL 37 (114)
T ss_pred HHHHHhCCccccCCCchhHHHHH
Confidence 578899999986 345555544
No 133
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=21.24 E-value=2.2e+02 Score=23.34 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=45.5
Q ss_pred HHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhhhhhhcc-cChhhHHH-------HHhcCChhhHHhh
Q 033071 42 IVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNAS-VDPANAAI-------ITKSGGIPLIIEC 112 (128)
Q Consensus 42 vlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaiggLcNlc-lDp~n~~~-------I~~~ggi~~i~~~ 112 (128)
.+..=.+|-||| |..||++..|=..... +.+.=.+-=--+||+.+ .||+.-.. ..+.-++.-|...
T Consensus 34 Ll~~n~~F~yD~-----lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 108 (216)
T PF11264_consen 34 LLSVNKDFQYDP-----LFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSW 108 (216)
T ss_pred HHHhccCceeCc-----hHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344557899998 5789999888766654 23333333346788886 78764322 3345667788888
Q ss_pred hcCC
Q 033071 113 LSSP 116 (128)
Q Consensus 113 LsS~ 116 (128)
|++.
T Consensus 109 l~~~ 112 (216)
T PF11264_consen 109 LSQK 112 (216)
T ss_pred Hhcc
Confidence 8764
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=21.19 E-value=3.6e+02 Score=21.55 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC------cHHHHHHH-hhhhhhccc
Q 033071 20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP------NEKLVEFG-VGGICNASV 92 (128)
Q Consensus 20 ~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~------n~~l~efa-iggLcNlcl 92 (128)
.+|.+.-++-|....+...--+++-++|.+...-.+|. +++++|-...... ...+.++- -.+||-||.
T Consensus 135 i~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~-----~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 135 IEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE-----EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH-----HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 46777788888888877777888889999977776553 5677777666542 22455543 478899998
Q ss_pred -ChhhHHHHHh
Q 033071 93 -DPANAAIITK 102 (128)
Q Consensus 93 -Dp~n~~~I~~ 102 (128)
|+...+.-++
T Consensus 210 ~D~v~A~~~~~ 220 (282)
T PF14938_consen 210 GDYVAARKALE 220 (282)
T ss_dssp T-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 7766665554
No 135
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.18 E-value=82 Score=31.42 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhccCCC-cHHHHHhh------------------cchhHHHHhhcCC-cHHHHHHHhhhhhhcc-cChhh
Q 033071 38 RKEKIVANLANFAYDPY-NYTFLRQL------------------NVLELFLDCITEP-NEKLVEFGVGGICNAS-VDPAN 96 (128)
Q Consensus 38 akeqvlAnLaNFAyDP~-N~~~Lrql------------------~vidlFld~L~~~-n~~l~efaiggLcNlc-lDp~n 96 (128)
.-.|++-||.+=. ||. .-+.|.|| -+++.++.+|.++ |..++-.|+=+|-++| +=|..
T Consensus 168 k~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3466777777765 653 22223332 2466777888764 8899999999999998 66999
Q ss_pred HHHHHhcCChhhHHhhh
Q 033071 97 AAIITKSGGIPLIIECL 113 (128)
Q Consensus 97 ~~~I~~~ggi~~i~~~L 113 (128)
-..+++++.||.+.+-|
T Consensus 247 ~a~vV~~~aIPvl~~kL 263 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKL 263 (1051)
T ss_pred hheeecccchHHHHHhh
Confidence 99999999999776543
No 136
>PRK01388 arginine deiminase; Provisional
Probab=21.13 E-value=1.5e+02 Score=26.13 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHHhh-hhccCCCcHHHHHhhcchhHHHHhhcCCcHHHHHHHhhhh
Q 033071 19 RLQYLQELVSQFQNSTDEERKEKIVANLA-NFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGI 87 (128)
Q Consensus 19 R~eyLq~LV~Efq~t~~~eakeqvlAnLa-NFAyDP~N~~~Lrql~vidlFld~L~~~n~~l~efaiggL 87 (128)
+-=||+.|+.|=- .+.++|++.+...- ...+++...+.+++ |++.+ ++..|++.-+||+
T Consensus 66 eV~~l~dll~e~l--~~~~~r~~~l~~~~~~~~~~~~~~~~l~~------~l~~~--~~~~l~~~~i~g~ 125 (406)
T PRK01388 66 EVLYLEDLLAETL--ANPEAREWFLDRQISEARVGLGLADELRA------YLESL--DNRELAEKLIGGV 125 (406)
T ss_pred EEEEhHHHHHHHh--cCHHHHHHHHHHHhhhccCCHHHHHHHHH------HHHhC--CHHHHHHHHHcCC
Confidence 4558888988764 37789999887652 22234444444443 34444 4689999999995
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.89 E-value=3.5e+02 Score=27.01 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcCC--cHHHHHHHhhhhhhccc
Q 033071 18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASV 92 (128)
Q Consensus 18 ~R~eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~~--n~~l~efaiggLcNlcl 92 (128)
.-.||++.||+.-..++-.|-|.-.+-.|--||- -|--.--+..+..|++.|..+ ++-++-.++-.+||+-.
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 4579999999999998888888888888888873 344445567899999999876 88999999999999953
No 138
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=4.4e+02 Score=26.80 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCCCcHHHHHhhcchhHHHHhhcC-CcHHHHHHHhh-------hhhhccc
Q 033071 21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVG-------GICNASV 92 (128)
Q Consensus 21 eyLq~LV~Efq~t~~~eakeqvlAnLaNFAyDP~N~~~Lrql~vidlFld~L~~-~n~~l~efaig-------gLcNlcl 92 (128)
..|.+|+.++ -+.+.+.+.|....|-+-++.|. ++..+.+.+.. ++|.+..+|+- ..|+ .+
T Consensus 4 ~~l~qLl~~l-~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~-~l 72 (1075)
T KOG2171|consen 4 APLEQLLQQL-LSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWS-RL 72 (1075)
T ss_pred hHHHHHHHHh-cCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh-cC
Confidence 4578899999 45555668888999988888765 77777888865 46766666643 3444 47
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCChhhhhhcc
Q 033071 93 DPANAAIITKSGGIPLIIECLSSPVRNTVNQRF 125 (128)
Q Consensus 93 Dp~n~~~I~~~ggi~~i~~~LsS~~e~tVl~a~ 125 (128)
|++.|+.|.. .+..|+-++.+.+|-+++
T Consensus 73 ~~e~~~siks-----~lL~~~~~E~~~~vr~k~ 100 (1075)
T KOG2171|consen 73 SAEVQQSIKS-----SLLEIIQSETEPSVRHKL 100 (1075)
T ss_pred CHHHHHHHHH-----HHHHHHHhccchHHHHHH
Confidence 7888888864 356666666666665543
No 139
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=20.30 E-value=1.2e+02 Score=18.87 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=18.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHh
Q 033071 5 NQRQEERTGRSGTPRLQYLQELVSQF 30 (128)
Q Consensus 5 ~~~l~~Rtg~~g~~R~eyLq~LV~Ef 30 (128)
+++|.+|-|-+=.+|-.||..+|++|
T Consensus 27 r~~Le~~~~~dL~~~K~~I~~~I~~~ 52 (54)
T PF08766_consen 27 REQLEERFGVDLSSRKKFIKELIDEF 52 (54)
T ss_dssp HHHHHHH-SS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 45677888888788888888888876
No 140
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=20.10 E-value=1e+02 Score=20.46 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhhc
Q 033071 5 NQRQEERTGRSGTPRLQYLQELVSQFQN 32 (128)
Q Consensus 5 ~~~l~~Rtg~~g~~R~eyLq~LV~Efq~ 32 (128)
++.|.+-.+...++=.+||+.|+..+..
T Consensus 47 h~~L~~~~~~~~v~l~~yl~~L~~~l~~ 74 (76)
T PF07568_consen 47 HEQLYQSEDLSEVDLREYLEELCEDLRQ 74 (76)
T ss_pred HHHHhcCCCCCeecHHHHHHHHHHHHHH
Confidence 4566666677788888999999887754
Done!