BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033073
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 69/115 (60%)
Query: 9 QLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL 68
+L V + +++ WD +++A+ G V+ +F+A WC PS + ++ EL+ Y ++
Sbjct: 20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLM 79
Query: 69 FLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSV 123
FL +DVDE+ ++ EIKA PTF +++G VDKLVGAN + K I + S+
Sbjct: 80 FLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 68/115 (59%)
Query: 9 QLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL 68
+L V + +++ WD +++A+ G V+ +F+A WC P + ++ EL+ Y ++
Sbjct: 20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLM 79
Query: 69 FLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSV 123
FL +DVDE+ ++ EIKA PTF +++G VDKLVGAN + K I + S+
Sbjct: 80 FLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS 71
+ +V ++ ++W+ + KA VVV FTA+WC P + FF +LA ++LFL
Sbjct: 15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLK 74
Query: 72 VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
VD DE+K VAS I+AMPTF+ +KEG ++DK+VGA ++ I
Sbjct: 75 VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%)
Query: 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73
V V+S + W + I +A VV+ FTA+WC PS M F +LA + + +FL VD
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 74 VDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA 107
VDE+K +A + ++AMPTF+ MKEG + D++VGA
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA 109
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%)
Query: 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS 71
+ +V ++ +W K +VV FTA+WC P + F ELA + ++ FL
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLK 62
Query: 72 VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
VDVDE+K VA + ++AMPTFI +K+G LVDK VGA+ + ++
Sbjct: 63 VDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLV 107
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73
V V+S + W + I +A VV+ FTA+WC P M F +LA + + +FL VD
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 74 VDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA 107
VDE+K +A + ++AMPTF+ MKEG + D++VGA
Sbjct: 73 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA 106
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 60/98 (61%)
Query: 19 NSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK 78
+++ +D +TKA G V++ FTA+WC P + F E A + +FL VDVDE+K
Sbjct: 20 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELK 79
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
VA K ++AMPTF+ +K+GA DK+VGA ++ I
Sbjct: 80 EVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 117
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC PS + FF L+ Y +++FL VDVD+ + VAS+ E+K+MPTF K+
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 94 GQKVGEFSGANKEKLEATINELV 116
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 18 VNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77
V S+ +D I+ Q V+V F A WC P + F+EE + TY ++F+ VDVDEV
Sbjct: 13 VTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEV 68
Query: 78 KVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGF 119
V K I +MPTF + K G+ VD L+GAN A++++I +
Sbjct: 69 SEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 110
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC PS + FF L+ Y +++FL VDVD+ + VAS+ E+K+MPTF K+
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC PS + FF L+ Y +++FL VDVD+ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K+MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 28 ITKATN---------QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK 78
ITK TN Q +V+ F A WC P M +L Y D+ F+ DVDE
Sbjct: 14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP 73
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
+A + E+ AMPTF+L K+G L+ K++GANP A+ K I
Sbjct: 74 DIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 111
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K+MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P+ + FF L+ Y +++FL VDVD+ + VAS+ E+KA PTF K+
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 47/79 (59%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC PS + E+ A Y D F +DVDEV VA K E+ +MPT I K
Sbjct: 30 VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 89
Query: 98 GALVDKLVGANPQAIRKMI 116
G V ++VGANP AI++ I
Sbjct: 90 GKEVTRVVGANPAAIKQAI 108
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 47/79 (59%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC PS + E+ A Y D F +DVDEV VA K E+ +MPT I K
Sbjct: 22 VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 81
Query: 98 GALVDKLVGANPQAIRKMI 116
G V ++VGANP AI++ I
Sbjct: 82 GKEVTRVVGANPAAIKQAI 100
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+KA PTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDV++ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K PTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A W PS + FF L+ Y +++FL VDVD+ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + E+ A Y D F +DVDEV VA K E+ +MPT I K
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 81
Query: 98 GALVDKLVGANPQAIRKMI 116
G V ++VGANP AI++ I
Sbjct: 82 GKEVTRVVGANPAAIKQAI 100
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + E+ A Y D F +DVDEV VA K E+ +MPT I K
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 88
Query: 98 GALVDKLVGANPQAIRKMI 116
G V ++VGANP AI++ I
Sbjct: 89 GKEVTRVVGANPAAIKQAI 107
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV 74
V ++++ +D + + G V++ FTA+WC P + F E A + +FL VDV
Sbjct: 8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDV 67
Query: 75 DEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHS 122
DE+K VA ++AMPTF+ +K+G VD +VG I I + S
Sbjct: 68 DELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC PS + E+ + Y F +DVDE+ VA K E+ AMPT +L K
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 98 GALVDKLVGANPQAIRKMI 116
G V K+VGANP AI++ I
Sbjct: 87 GKEVAKVVGANPAAIKQAI 105
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + E+ + Y F +DVDE+ VA K E+ AMPT +L K
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 80
Query: 98 GALVDKLVGANPQAIRKMI 116
G V K+VGANP AI++ I
Sbjct: 81 GKEVAKVVGANPAAIKQAI 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + E+ + Y F +DVDE+ VA K E+ AMPT +L K
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 98 GALVDKLVGANPQAIRKMI 116
G V K+VGANP AI++ I
Sbjct: 87 GKEVAKVVGANPAAIKQAI 105
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VV+ F A WC P + EEL+ + D++FL VDVDE + +A +I MPTF+ MK
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82
Query: 98 GALVDKLVGANPQAIRKMI 116
G +D L GAN + +++
Sbjct: 83 GQKLDSLSGANYDKLLELV 101
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + F+EL+ Y D +F+ VDVD+++ A K I AMPTFI +K
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIKN 85
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V +VGA+ + MI FI
Sbjct: 86 GEKVGDVVGASIAKVEDMIKKFI 108
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F A WC P + F+EL+ Y D +F+ VDVD+++ A K I AMPTFI +K
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIKN 94
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V +VGA+ + MI FI
Sbjct: 95 GEKVGDVVGASIAKVEDMIKKFI 117
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTF 92
N+G +VV F A WC P + E LA ++ F VDVD+ + A+K + AMPTF
Sbjct: 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTF 76
Query: 93 ILMKEGALVDKLVGANPQAIRKMI 116
+ +K+G VD+ GAN +R+ I
Sbjct: 77 VFIKDGKEVDRFSGANETKLRETI 100
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VA K I+ +PT +L K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKN 82
Query: 98 GALVDKLVGA 107
G + VGA
Sbjct: 83 GEVAATKVGA 92
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVV 80
S+D F + T VV+ F A WC P + FE+++ T + F VDVDE +
Sbjct: 22 SYDQF-KQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI 80
Query: 81 ASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMIN 117
A ++ I+AMPTF+ K G +D +VGA+P ++ I
Sbjct: 81 AQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT 117
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
VVV F+A WC P + FF L+ Y +++FL VDVD+ + VAS+ E+K MPTF K+
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFKK 82
Query: 98 GALVDKLVGANPQAIRKMINGFI 120
G V + GAN + + IN +
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73
+V VN + W I KA PVV+ WC PS AM +E+LA Y D++FL +D
Sbjct: 6 KVTEVNKDTFWP--IVKAAGDK-PVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLD 62
Query: 74 VD-EVKVVASKMEIKAMPTFILMKEGALVDKLVGAN 108
+ E K +A ++ I+ +PTF ++KE ++V ++ GA
Sbjct: 63 CNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 98
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFL 70
+K V +NS K++D FITK VVV F A WC P + + EELA+ Y + F
Sbjct: 4 VKEPVKHLNS-KNFDEFITKNKI----VVVDFWAEWCAPCLILAPVIEELANDYPQVAFG 58
Query: 71 SVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQ 110
++ +E + +A + I ++PT + K G LVD+++GA P+
Sbjct: 59 KLNTEESQDIAMRYGIMSLPTIMFFKNGELVDQILGAVPR 98
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 18 VNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDE 76
++S+ +WD + K + P+VV FTA WC P + FE L++ Y ++FL VDVD
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66
Query: 77 VKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
V VA I AMPTF + K+G D LVGA+ ++ ++
Sbjct: 67 VAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV 106
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 18 VNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDE 76
++S+ +WD + K + P+VV FTA WC P + FE L++ Y ++FL VDVD
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66
Query: 77 VKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 116
V VA I AMPTF + K+G D LVGA+ ++ ++
Sbjct: 67 VAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV 106
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 7 GAQLMKS---RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELAST 63
G Q M++ +V VN + W I KA PVV+ WC P AM +E+LA
Sbjct: 9 GTQEMEAIVGKVTEVNKDTFWP--IVKAAGDK-PVVLDMFTQWCGPCKAMAPKYEKLAEE 65
Query: 64 YQDILFLSVDVD-EVKVVASKMEIKAMPTFILMKEGALVDKLVGAN 108
Y D++FL +D + E K +A ++ I+ +PTF ++KE ++V ++ GA
Sbjct: 66 YLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSV 72
+V VN + W I KA PVV+ WC P AM +E+LA Y D++FL +
Sbjct: 6 GKVTEVNKDTFWP--IVKAAGDK-PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKL 62
Query: 73 DVD-EVKVVASKMEIKAMPTFILMKEGALVDKLVGAN 108
D + E K +A ++ I+ +PTF ++KE ++V ++ GA
Sbjct: 63 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVD 73
V +V + D +TKA+ G VV+ F A WC P ++ EL++ + D ++ L VD
Sbjct: 2 VYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 59
Query: 74 VDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFI 120
VDE + +A + I +MPTF+ +K G V++ GAN + + +I I
Sbjct: 60 VDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 106
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVD 73
V +V + D +TKA+ G VV+ F A WC P ++ EL++ + D ++ L VD
Sbjct: 7 VYQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVD 64
Query: 74 VDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFI 120
VDE + +A + I +MPTF+ +K G V++ GAN + + +I I
Sbjct: 65 VDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 111
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98
V FTA WC P + E++A + + F VD D + SK + +PTFI+ + G
Sbjct: 41 VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSG 100
Query: 99 ALVDKLVGANPQAIRKMINGFI 120
++ ++GANP +R+ + I
Sbjct: 101 KMLGHVIGANPGMLRQKLRDII 122
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
+V F A WC P + EELA+ Y+ DIL L DVDE A+K E+ ++PT I+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKL--DVDENPSTAAKYEVMSIPTLIVF 81
Query: 96 KEGALVDKLVGANPQ 110
K+G VDK+VG P+
Sbjct: 82 KDGQPVDKVVGFQPK 96
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELAS--TYQDILFLSV 72
V +N ++ + T A +V++F +W P A+ FE +++ + ++ FLS+
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKL-IVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
Query: 73 DVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124
D DE ++ EI A+P FI++ +G ++ +L GA+P+ ++ +SV
Sbjct: 61 DADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDXKNSVN 112
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASKMEIKAMPTFILMK 96
V+V F A WC P + EE+A Y+ L ++ +DVDE A + + ++PT IL K
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 97 EGALVDKLVGANPQ 110
+G V+ LVGA P+
Sbjct: 82 DGQPVEVLVGAQPK 95
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASKMEIKAMPTFILMK 96
V+V F A WC P + EE+A Y+ L ++ +DVDE A + + ++PT IL K
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 97 EGALVDKLVGANPQ 110
+G V+ LVGA P+
Sbjct: 81 DGQPVEVLVGAQPK 94
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F A WC P + EELA Y+ + + V+VDE A++ I+++PT +L
Sbjct: 21 PVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLF 80
Query: 96 KEGALVDKLVGANP-QAIRKMIN 117
K G +VD+LVGA P +A+++ I+
Sbjct: 81 KNGQVVDRLVGAQPKEALKERID 103
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98
VV F A WC P + + EELA Y + F ++ DE +A++ + ++PT I K+G
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDG 79
Query: 99 ALVDKLVGANPQ 110
VD+++GA P+
Sbjct: 80 EPVDEIIGAVPR 91
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
+V F A WC S + EELA+ Y+ DIL L DVDE A+K E+ ++PT I+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKL--DVDENPSTAAKYEVMSIPTLIVF 81
Query: 96 KEGALVDKLVGANPQ 110
K+G VDK+VG P+
Sbjct: 82 KDGQPVDKVVGFQPK 96
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 27 FITKATNQGCPVVVHFTAAWCMPSVAMNHFFEEL-ASTYQDILFLSVDVDEVKVVASKME 85
F + N PVVV F A WC P + E++ A + ++ VD+D+ +A + E
Sbjct: 23 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYE 82
Query: 86 IKAMPTFILMKEGALVDKLVG 106
+ A+PT + MK G +VDK VG
Sbjct: 83 VSAVPTVLAMKNGDVVDKFVG 103
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 19 NSEKSWDLFITKAT------NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLS 71
+SEKS + +T A+ + PV+V F A WC PS + EE+A+ D+
Sbjct: 5 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAK 64
Query: 72 VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+DVD A ++ ++PT IL K+G V ++VGA +A
Sbjct: 65 LDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKA 104
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
+V F A WC + EELA+ Y+ DIL L DVDE A+K E+ ++PT I+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKL--DVDENPSTAAKYEVMSIPTLIVF 80
Query: 96 KEGALVDKLVGANPQ 110
K+G VDK+VG P+
Sbjct: 81 KDGQPVDKVVGFQPK 95
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVV 80
K+ D + T++G V+ F A WC PS + EEL D L + +DVDE +
Sbjct: 5 KATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 81 ASKMEIKAMPTFILMKEGALVDKLVGANP-QAIRKMIN 117
A K + ++PT +++K+G +V+ VG P +A+++++N
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVV 80
K+ D + T++G V+ F A WC PS + EEL D L + +DVDE +
Sbjct: 5 KATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 81 ASKMEIKAMPTFILMKEGALVDKLVGANP-QAIRKMIN 117
A K + ++PT +++K+G +V+ VG P +A+++++N
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
+V F A WC + EELA+ Y+ DIL L DVDE A+K E+ ++PT I+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKL--DVDENPSTAAKYEVMSIPTLIVF 81
Query: 96 KEGALVDKLVGANPQ 110
K+G VDK+VG P+
Sbjct: 82 KDGQPVDKVVGFQPK 96
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVVASK 83
D F PV+V F A WC P + +E+A Y+D L + ++ DE VAS+
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 84 MEIKAMPTFILMKEGALVDKLVGANPQA 111
I+++PT ++ K G + ++GA P+A
Sbjct: 69 YGIRSIPTIMVFKGGKKCETIIGAVPKA 96
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F AAWC P M EE A + D + ++VDE S+ I ++PT IL
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 96 KEGALVDKLVGANPQ 110
K G V +L+G P+
Sbjct: 79 KGGEPVKQLIGYQPK 93
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F AAWC P M EE A + D + ++VDE S+ I ++PT IL
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 96 KEGALVDKLVGANPQ 110
K G V +L+G P+
Sbjct: 79 KGGRPVKQLIGYQPK 93
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSV 72
V VN + SW F+ ++ PV+V F A WC PS + +ELA Y I +
Sbjct: 1 EVQDVN-DSSWKEFVLESE---VPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKL 56
Query: 73 DVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+ DE +A++ I+++PT + K G + ++GA P++
Sbjct: 57 NTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKS 95
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F AAWC P M EE A + D + ++VDE S+ I ++PT IL
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 96 KEGALVDKLVGANPQ 110
K G V +L+G P+
Sbjct: 79 KGGEPVKQLIGYQPK 93
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F AAWC P M EE A + D + ++VDE S+ I ++PT IL
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 96 KEGALVDKLVGANPQ 110
K G V +L+G P+
Sbjct: 79 KGGRPVKQLIGYQPK 93
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
+VVHF A W MN ELA + F+ ++ + V V+ K EI ++PTF+ K
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 100
Query: 98 GALVDKLVGANPQAIRKMIN 117
+D+L GA+ + K +
Sbjct: 101 SQKIDRLDGAHAPELTKKVQ 120
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
+V F A C P + EELA+ Y+ DIL L DVDE A+K E+ ++PT I+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKL--DVDENPSTAAKYEVMSIPTLIVF 80
Query: 96 KEGALVDKLVGANPQ 110
K+G VDK+VG P+
Sbjct: 81 KDGQPVDKVVGFQPK 95
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 19 NSEKSWDLFITKAT------NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLS 71
+SEKS + +T A+ + PV+V F A WC P + EE+A+ D+
Sbjct: 8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAK 67
Query: 72 VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+DVD A ++ ++PT IL K+G V ++VGA +A
Sbjct: 68 LDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKA 107
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVV 80
K+ D + T++G V+ F A WC P + EEL D L + +DVDE +
Sbjct: 5 KATDQSFSAETSEGV-VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQET 63
Query: 81 ASKMEIKAMPTFILMKEGALVDKLVGANP-QAIRKMIN 117
A K + ++PT +++K+G +V+ VG P +A+++++N
Sbjct: 64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97
+VVHF A W MN ELA + F+ ++ + V V+ K EI ++PTF+ K
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 94
Query: 98 GALVDKLVGANPQAIRKMIN 117
+D+L GA+ + K +
Sbjct: 95 SQKIDRLDGAHAPELTKKVQ 114
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
P+++ FT +WC P M FEE+AS + DI F +D ++ + +++ I+ +P+ L
Sbjct: 19 PIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALF 78
Query: 96 KEGALVDKLVGA-NPQAIRKMINGFI 120
+G + + G N +R IN I
Sbjct: 79 VDGMIREVFSGTMNKSDLRYWINNNI 104
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 19 NSEKSWDLFITKAT------NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLS 71
+SEKS + +T A+ + PV+V F A WC P + EE+A+ D+
Sbjct: 3 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAK 62
Query: 72 VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+DVD A ++ ++PT IL K+G V ++VGA +A
Sbjct: 63 LDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKA 102
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVVASKMEIKAMPTFILMKE 97
+V F A WC P ++ EELA + L + V+VDE +A++ ++++PT +L +
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 98 GALVDKLVGANPQAI 112
GA V VGA+P+ +
Sbjct: 114 GAPVATWVGASPRRV 128
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVK 78
++ SW F+ ++ PV+V F A WC P + +ELA Y I ++ DE
Sbjct: 5 NDSSWKEFVLESE---VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+A++ I+++PT + K G + ++GA P++
Sbjct: 62 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKS 94
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVK 78
++ SW F+ ++ PV+V F A WC P + +ELA Y I ++ DE
Sbjct: 6 NDSSWKEFVLESE---VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+A++ I+++PT + K G + ++GA P++
Sbjct: 63 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKS 95
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 7 GAQLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD 66
GA L+ +VA ++ + +A P++V F A WC P M F+ A+T
Sbjct: 41 GAGLITGKVAGIDPA-----ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG 95
Query: 67 ILFLS-VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANP 109
+ L+ +D VA + I+ +P FIL +G + + GA P
Sbjct: 96 QVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARP 139
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V F AAWC P + E +A+ Y D I + +++DE A+K + ++PT +
Sbjct: 25 PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY 84
Query: 96 KEGALVDKLVGANPQ-AIRKMINGFI 120
+ G + +VGA P+ AI + + FI
Sbjct: 85 QGGEVAKTIVGAKPKAAIVRDLEDFI 110
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILM 95
P V+ F A WC P + F E A+ + F+ V+ + ++++ I+++PT L
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLY 116
Query: 96 KEGALVDKLVGANPQA 111
+ G +D L GA P+A
Sbjct: 117 RNGKXIDXLNGAVPKA 132
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC PS + +E+A YQ L ++ +++D+ A K
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P+ + +E+A YQ L ++ +++D+
Sbjct: 28 TDDSFDTDVLKADGA---ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 85 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
+E S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TEDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + EE+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPT-FILMK 96
V+V F A WC P + +A +D+ F+ VDVD+ A + ++P F + K
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKK 85
Query: 97 EG---ALVDKLVGANPQAIRKMINGF 119
EG +D+ VGA+ I+ I F
Sbjct: 86 EGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
+++S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDESFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVK 78
S+ S+D + KA+ V+V F A WC P + E+ + + V++D+
Sbjct: 8 SDSSFDQDVLKASGL---VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGANPQA 111
+ +++++PT +L+++G ++DK VGA P++
Sbjct: 65 ETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKS 97
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+++PT +L K G + VGA
Sbjct: 65 GTAPKYGIRSIPTLLLFKNGEVAATKVGA 93
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGDVAATKVGA 93
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC P + +E+A YQ L ++ +++D+ A K
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 80 YGIRGIPTLLLFKNGEVAATKVGA 103
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC P + +E+A YQ L ++ +++D+ A K
Sbjct: 10 DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 31 ATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMP 90
++ Q +V+ F A WC P + +F+ + Y + + +DVD + + IKA+P
Sbjct: 36 SSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY-VTLVDIDVDIHPKLNDQHNIKALP 94
Query: 91 TFI----LMKEGALVDKLVGANPQAIRKMINGF 119
TF L E LV + GAN I K +
Sbjct: 95 TFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKY 127
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98
VV FT C P + + F +++ Y +FL VDV + + A+ I A PTF +
Sbjct: 25 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNK 84
Query: 99 ALVDKLVGANPQAIRKMI 116
+D+ GA+ + + I
Sbjct: 85 VRIDQYQGADAVGLEEKI 102
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 9 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ PT +L K G + VGA
Sbjct: 66 GTAPKYGIRGTPTLLLFKNGEVAATKVGA 94
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAACKVGA 93
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMK 96
+V++F A WC + ++L Y + I L VD+D+ + +A K +K++PT IL+K
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLK 104
Query: 97 EGALV---DKLVGAN 108
++ D V +N
Sbjct: 105 NKTMLARKDHFVSSN 119
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMK 96
V+V A WC P ++++A Y+ +F ++VDE + +A K + +PT ++
Sbjct: 24 VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFV 83
Query: 97 EGALVDKLVGA-NPQAIRKMINGFI 120
G LVD LVGA + + +N ++
Sbjct: 84 NGQLVDSLVGAVDEDTLESTVNKYL 108
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +++A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 2 QGNGNGAQLMKSR-VARV-NSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEE 59
+GNG L K+ +A+V N EK+ + + + P +V F A WC P + +E
Sbjct: 6 EGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDK---PAIVDFYADWCGPCKMVAPILDE 62
Query: 60 LASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQA-IRKMIN 117
LA Y I+ VD ++ + +A I+++P+ + + + GA P+A +K I+
Sbjct: 63 LAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAID 122
Query: 118 GFI 120
F+
Sbjct: 123 EFL 125
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 8 AQLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDI 67
A+ +K N K W K P +V F A WC P + EEL+ Y
Sbjct: 30 AEFLKKIADYENHSKEWKYLGDK------PAIVDFYADWCGPCKMVAPILEELSKEYAGK 83
Query: 68 LFL-SVDVDEVKVVASKMEIKAMPT--FILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124
+++ V+VD+ +A I+ +PT F+ MK V+ +GA ++ + G+I V
Sbjct: 84 IYIYKVNVDKEPELARDFGIQGIPTIWFVPMKGEPQVN--MGA---LSKEQLKGYIDKVL 138
Query: 125 LHK 127
L +
Sbjct: 139 LKQ 141
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC + + +E+A YQ L ++ +++D+ A K
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 8 AQLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDI 67
A+ +K N K W K P +V F A WC P + EEL+ Y
Sbjct: 30 AEFLKKIADYENHSKEWKYLGDK------PAIVDFYADWCGPCKMVAPILEELSKEYAGK 83
Query: 68 LFL-SVDVDEVKVVASKMEIKAMPT--FILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124
+++ V+VD+ +A I+++PT F+ MK V+ +GA ++ + G+I V
Sbjct: 84 IYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVN--MGA---LSKEQLKGYIDKVL 138
Query: 125 LHK 127
L +
Sbjct: 139 LKQ 141
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVK 78
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDLVKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 79 VVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K + +PT +L K G + VGA
Sbjct: 65 GTAPKYIERGIPTLLLFKNGEVAATKVGA 93
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC+ + +E+A YQ L ++ +++D+ A K
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 36 CPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASKMEIKAMPTFIL 94
PV+ +F + + + E LA+ Y L+ +D D +++A++ ++A+PT L
Sbjct: 27 TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYL 86
Query: 95 MKEGALVDKLVGANP-QAIRKMIN 117
+ G VD G P +AIR +++
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALLD 110
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWC-MPSVAMNHFFEELASTYQDILFLS-VDVDEV 77
++ S+D + KA ++V F A WC P + +E+A YQ L ++ +++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 78 KVVASKMEIKAMPTFILMKEGALVDKLVGA 107
A K I+ +PT +L K G + VGA
Sbjct: 65 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 25 DLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASK 83
D F T ++V F A WC + +E+A YQ L ++ +++D+ A K
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 84 MEIKAMPTFILMKEGALVDKLVGA 107
I+ +PT +L K G + VGA
Sbjct: 70 YGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 36 CPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASKMEIKAMPTFIL 94
PV+ +F + + + E LA+ Y L+ +D D + +A++ ++A+PT L
Sbjct: 27 TPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYL 86
Query: 95 MKEGALVDKLVGANP-QAIRKMIN 117
+ G VD G P +AIR +++
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALLD 110
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVVASKMEIKAMPTFILM 95
PV+V+F A+WC P M+ A+TY D L + +++D K +++ +P L+
Sbjct: 27 PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV 86
Query: 96 KEGALVDKLVG 106
K ++D G
Sbjct: 87 KGEQILDSTEG 97
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQD----ILFLSVDVDEVKVVASKMEIKAMPTFI 93
V++ F A WC +E++AST +D I +D ++ASK ++ PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 94 LMKEGALVD 102
++K+G VD
Sbjct: 97 ILKKGQAVD 105
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNH--------------FFEELASTYQ 65
++ S+D + KA ++V F A WC P + +E+A YQ
Sbjct: 9 TDDSFDTDVLKADGA---ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ 65
Query: 66 DILFLS-VDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA 107
L ++ +++D+ A K I+ +PT +L K G + VGA
Sbjct: 66 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 108
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-------ILFLSVDVDEVKVV 80
I + N +V+F A WC S ++ FEE + ++ ++F VD D+ +
Sbjct: 15 IDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDI 74
Query: 81 ASKMEIKAMPTFILMKEG 98
A + I PT L + G
Sbjct: 75 AQRYRISKYPTLKLFRNG 92
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 74 VDEVKVVASKME-----IKAMPTFILMKEGALVDKLVGANPQAIR 113
+ E ++ A+++E ++ PT + KEG +VDKLVGA P +++
Sbjct: 73 IGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLK 117
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQD----ILFLSVDVDEVKVVASKMEIKAMPTFI 93
V++ F A WC +E++A+ +D I +D V+AS+ ++ PT
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94
Query: 94 LMKEGALVD 102
++K+G VD
Sbjct: 95 ILKKGQAVD 103
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 37 PVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILM 95
PVVV F + C A +FEE A Y +F +++ A K ++ PTF
Sbjct: 26 PVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFF 85
Query: 96 KEGALVDKLVG 106
G V + VG
Sbjct: 86 CHGRPVWEQVG 96
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDIL-FLSVDVDEVKVVASKMEIKAMPT 91
++G +V F+ C + EEL Y++ F VDV+E K + + +K +P
Sbjct: 20 DEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQ 79
Query: 92 FILMKEGALVDKLVG 106
+ K+G K G
Sbjct: 80 ILYFKDGEYKGKXAG 94
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLS-VDVDEVKVVASKM--EIKAMPTFIL 94
V++ F A WC A+ +EEL + Y F V + +V A+ + EI+ PT L
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 87
Query: 95 MKEGA 99
GA
Sbjct: 88 YPAGA 92
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 38 VVVHFTAAWCMPSVAMNHFF------EELASTYQDILFLSVDVDEVKVVASKMEIKAMPT 91
V+V+F + C MN F L + +SVD E + +A + + PT
Sbjct: 22 VMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81
Query: 92 FILM--KEGAL--VDKLVGANPQA 111
F+ + K GA V +L G+ P+A
Sbjct: 82 FVFLVPKAGAWEEVGRLFGSRPRA 105
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 39 VVHFTAAWCMPSVAMNHFFEELASTYQDIL--FLSVDVDEVKVVASKMEIKAMPTFILMK 96
++ F A WC + +E A +D+ VDV E ++ + I A+PT K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 97 EGAL 100
+G
Sbjct: 86 DGEF 89
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex
Between The N-terminal Domain Of The Electron Transfer
Catalyst Dsbd And The Cytochrome C Biogenesis Protein
Ccmg
Length = 149
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86
QG PV+++ A WC S A + + +L++ ++ ++ D K ++ E+
Sbjct: 25 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 77
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 38 VVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEVKVVASKMEIKAMPTFI 93
V+V + A WC + ++ELA TY D+L +D E V + I+ PT +
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDV--RGVVIEGYPTIV 436
Query: 94 LMKEGALVDKLV 105
L G + +V
Sbjct: 437 LYPGGKKSESVV 448
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 39 VVHFTAAWCMP---------SVAMNHFFEELASTYQDIL-------------FLSVDVDE 76
+V+ A+WC+P + + F+ + Y+D F V VD
Sbjct: 46 LVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDA 105
Query: 77 VKVVASKMEIKAMP-TFILMKEGALVDKLVGA-NPQAIRKMI 116
+ + + +P TF++ +EG +V KLVG P +R ++
Sbjct: 106 NGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVL 147
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86
QG PV+++ A WC A + + +L++ ++ ++ D K ++ E+
Sbjct: 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 102
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86
QG PV+++ A WC A + + +L++ ++ ++ D K ++ E+
Sbjct: 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 102
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86
QG PV+++ A WC A + + +L++ ++ ++ D K ++ E+
Sbjct: 11 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 63
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86
QG PV+++ A WC A + + +L++ ++ ++ D K ++ E+
Sbjct: 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL 119
>pdb|2XMA|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|B Chain B, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|E Chain E, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|F Chain F, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
Length = 143
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 66 DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMING 118
+++ + V D V ++ S +A+P F+ +GA ++ A PQ K+ G
Sbjct: 60 EVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYPQLKEKLWGG 112
>pdb|2XM3|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|B Chain B, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|C Chain C, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|E Chain E, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|F Chain F, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XQC|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Complexed With
Left End Recognition And Cleavage Site And Zn
pdb|2XQC|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Complexed With
Left End Recognition And Cleavage Site And Zn
Length = 140
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 66 DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMING 118
+++ + V D V ++ S +A+P F+ +GA ++ A PQ K+ G
Sbjct: 57 EVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYPQLKEKLWGG 109
>pdb|2XO6|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Y132f Mutant
Complexed With Left End Recognition And Cleavage Site
pdb|2XO6|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Y132f Mutant
Complexed With Left End Recognition And Cleavage Site
Length = 140
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 66 DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMING 118
+++ + V D V ++ S +A+P F+ +GA ++ A PQ K+ G
Sbjct: 57 EVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYPQLKEKLWGG 109
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 40 VHFTAAWCMPSVAMNHFFEELASTYQD------ILFLSVDVDEVKVVASKMEIKAMPT-- 91
V F A+WC ++A ++ELA+ +D + L + V + I PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 92 ----FILMKEGALVDKLVGANPQAIR 113
F GA + GAN Q +R
Sbjct: 95 FFQAFTKNGSGATLPG-AGANVQTLR 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,437,642
Number of Sequences: 62578
Number of extensions: 117912
Number of successful extensions: 479
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 140
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)