Query 033073
Match_columns 128
No_of_seqs 136 out of 1006
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.5E-28 3.3E-33 149.7 11.7 105 14-121 43-149 (150)
2 cd02985 TRX_CDSP32 TRX family, 100.0 8.2E-27 1.8E-31 137.4 13.4 98 20-119 2-102 (103)
3 KOG0907 Thioredoxin [Posttrans 99.9 8.9E-27 1.9E-31 136.9 12.3 100 20-119 6-105 (106)
4 PHA02278 thioredoxin-like prot 99.9 2.7E-26 5.8E-31 134.7 12.6 93 19-115 2-100 (103)
5 cd02948 TRX_NDPK TRX domain, T 99.9 8.5E-26 1.8E-30 132.8 13.1 97 17-118 3-101 (102)
6 cd02954 DIM1 Dim1 family; Dim1 99.9 2.5E-26 5.3E-31 136.0 10.6 85 21-107 2-87 (114)
7 PF00085 Thioredoxin: Thioredo 99.9 2.4E-25 5.3E-30 130.6 14.1 100 16-119 2-103 (103)
8 PLN00410 U5 snRNP protein, DIM 99.9 1.7E-25 3.8E-30 137.0 13.5 109 15-125 5-125 (142)
9 COG3118 Thioredoxin domain-con 99.9 5.9E-26 1.3E-30 151.6 11.9 110 11-122 21-132 (304)
10 KOG0908 Thioredoxin-like prote 99.9 9.8E-26 2.1E-30 146.7 10.7 110 13-124 1-110 (288)
11 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3E-25 6.6E-30 132.1 11.8 102 11-115 7-112 (113)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.9E-25 8.4E-30 129.8 11.1 97 14-115 2-100 (101)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.2E-25 9E-30 130.2 11.1 99 14-116 2-104 (104)
14 PRK10996 thioredoxin 2; Provis 99.9 2.5E-24 5.4E-29 133.0 14.7 104 12-120 34-139 (139)
15 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1E-24 2.2E-29 130.3 12.5 92 12-107 3-94 (113)
16 PRK09381 trxA thioredoxin; Pro 99.9 1.8E-24 3.8E-29 128.6 13.5 104 13-120 3-108 (109)
17 cd02956 ybbN ybbN protein fami 99.9 1.1E-24 2.4E-29 126.6 12.0 93 23-117 2-96 (96)
18 cd03065 PDI_b_Calsequestrin_N 99.9 1.5E-24 3.2E-29 130.1 12.4 103 13-120 9-119 (120)
19 cd02963 TRX_DnaJ TRX domain, D 99.9 1.8E-24 3.8E-29 129.0 11.4 99 20-119 10-111 (111)
20 PTZ00051 thioredoxin; Provisio 99.9 4.1E-24 8.8E-29 124.7 12.4 96 15-114 2-97 (98)
21 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.5E-24 5.5E-29 127.7 11.4 98 14-116 2-108 (108)
22 cd02999 PDI_a_ERp44_like PDIa 99.9 1.9E-24 4.1E-29 126.6 10.5 91 23-116 8-100 (100)
23 cd02965 HyaE HyaE family; HyaE 99.9 8.4E-24 1.8E-28 124.5 12.0 95 14-113 11-109 (111)
24 cd02994 PDI_a_TMX PDIa family, 99.9 9.5E-24 2.1E-28 123.8 11.8 97 14-118 2-101 (101)
25 cd02984 TRX_PICOT TRX domain, 99.9 1.4E-23 3E-28 122.2 12.1 95 20-116 1-96 (97)
26 cd02986 DLP Dim1 family, Dim1- 99.9 1.5E-23 3.2E-28 123.4 11.2 98 21-120 2-111 (114)
27 cd02962 TMX2 TMX2 family; comp 99.9 4.5E-23 9.7E-28 128.5 13.7 92 12-106 27-126 (152)
28 cd02950 TxlA TRX-like protein 99.9 3.5E-23 7.6E-28 128.2 12.9 100 21-124 10-114 (142)
29 cd02957 Phd_like Phosducin (Ph 99.9 2.2E-23 4.7E-28 124.7 11.5 93 12-107 3-95 (113)
30 cd02987 Phd_like_Phd Phosducin 99.9 4.8E-23 1E-27 131.4 13.8 96 10-107 59-154 (175)
31 cd03005 PDI_a_ERp46 PDIa famil 99.9 4.4E-23 9.6E-28 121.0 11.9 96 15-116 2-102 (102)
32 PTZ00443 Thioredoxin domain-co 99.9 1.1E-22 2.4E-27 133.8 14.7 110 12-122 29-141 (224)
33 cd03002 PDI_a_MPD1_like PDI fa 99.9 4.2E-23 9.1E-28 122.5 11.1 98 15-116 2-108 (109)
34 TIGR01068 thioredoxin thioredo 99.9 1.3E-22 2.9E-27 118.5 12.8 98 20-120 2-101 (101)
35 cd02997 PDI_a_PDIR PDIa family 99.9 2.8E-22 6E-27 117.9 12.0 97 15-116 2-104 (104)
36 cd02975 PfPDO_like_N Pyrococcu 99.9 5.9E-22 1.3E-26 118.4 11.6 88 34-121 21-111 (113)
37 cd03001 PDI_a_P5 PDIa family, 99.9 7.3E-22 1.6E-26 116.0 11.8 98 15-116 2-102 (103)
38 cd02949 TRX_NTR TRX domain, no 99.9 1.2E-21 2.5E-26 114.2 12.4 91 24-117 5-97 (97)
39 TIGR01295 PedC_BrcD bacterioci 99.9 1.2E-21 2.6E-26 118.4 12.7 97 14-116 7-120 (122)
40 TIGR01126 pdi_dom protein disu 99.9 6.7E-22 1.5E-26 115.8 10.8 96 20-119 2-101 (102)
41 PTZ00062 glutaredoxin; Provisi 99.9 7.4E-22 1.6E-26 128.1 11.8 94 19-123 4-97 (204)
42 cd02953 DsbDgamma DsbD gamma f 99.9 4.4E-22 9.6E-27 117.3 9.1 92 22-117 2-104 (104)
43 cd02988 Phd_like_VIAF Phosduci 99.9 2.5E-21 5.5E-26 125.0 12.8 103 10-117 79-189 (192)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 1.7E-21 3.7E-26 114.5 10.2 98 14-116 1-104 (104)
45 cd02993 PDI_a_APS_reductase PD 99.9 4.7E-21 1E-25 113.9 11.2 101 14-116 2-109 (109)
46 cd02998 PDI_a_ERp38 PDIa famil 99.9 3.1E-21 6.7E-26 113.5 9.9 98 15-116 2-105 (105)
47 cd03000 PDI_a_TMX3 PDIa family 99.9 5.3E-21 1.2E-25 112.7 10.5 85 34-119 14-103 (104)
48 cd02961 PDI_a_family Protein D 99.9 5.4E-21 1.2E-25 111.2 10.0 93 20-116 4-101 (101)
49 cd02951 SoxW SoxW family; SoxW 99.9 1.7E-20 3.6E-25 114.0 12.3 98 22-123 4-122 (125)
50 cd02947 TRX_family TRX family; 99.9 3.5E-20 7.6E-25 106.0 11.9 90 23-116 2-92 (93)
51 cd02952 TRP14_like Human TRX-r 99.8 6.3E-20 1.4E-24 109.8 10.3 98 17-116 5-118 (119)
52 cd02992 PDI_a_QSOX PDIa family 99.8 2.8E-20 6.1E-25 111.3 8.6 82 14-99 2-89 (114)
53 TIGR01130 ER_PDI_fam protein d 99.8 2.3E-19 4.9E-24 129.3 13.0 104 14-122 2-111 (462)
54 PTZ00102 disulphide isomerase; 99.8 2.9E-19 6.3E-24 129.5 13.3 104 13-122 32-140 (477)
55 PLN02309 5'-adenylylsulfate re 99.8 4E-19 8.7E-24 127.1 13.1 106 12-119 344-456 (457)
56 KOG0190 Protein disulfide isom 99.8 8.1E-20 1.7E-24 130.4 9.5 109 11-124 23-136 (493)
57 TIGR00424 APS_reduc 5'-adenyly 99.8 5.2E-19 1.1E-23 126.6 12.6 107 11-119 349-462 (463)
58 PRK00293 dipZ thiol:disulfide 99.8 7.5E-19 1.6E-23 129.6 12.9 109 12-120 451-570 (571)
59 PTZ00102 disulphide isomerase; 99.8 6.6E-19 1.4E-23 127.7 11.7 106 13-122 357-467 (477)
60 TIGR00411 redox_disulf_1 small 99.8 5.2E-18 1.1E-22 95.7 10.7 78 38-119 2-81 (82)
61 cd02959 ERp19 Endoplasmic reti 99.8 8.1E-19 1.7E-23 105.4 7.0 99 23-121 7-114 (117)
62 TIGR02187 GlrX_arch Glutaredox 99.8 2.9E-17 6.2E-22 108.2 12.9 88 34-121 18-112 (215)
63 cd02982 PDI_b'_family Protein 99.8 7.1E-18 1.5E-22 99.0 8.8 86 34-119 11-102 (103)
64 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.6E-17 3.6E-22 98.7 9.8 98 14-119 2-115 (116)
65 cd02955 SSP411 TRX domain, SSP 99.7 1.6E-16 3.5E-21 96.0 11.2 86 34-119 14-118 (124)
66 PHA02125 thioredoxin-like prot 99.7 1.4E-16 2.9E-21 88.6 9.7 70 39-116 2-73 (75)
67 PF13098 Thioredoxin_2: Thiore 99.7 5.7E-17 1.2E-21 96.5 8.7 83 34-116 4-112 (112)
68 TIGR02187 GlrX_arch Glutaredox 99.7 2.2E-16 4.7E-21 104.1 12.0 81 35-118 133-214 (215)
69 TIGR02740 TraF-like TraF-like 99.7 3.7E-16 8.1E-21 105.9 13.1 90 31-121 162-265 (271)
70 PRK15412 thiol:disulfide inter 99.7 3E-16 6.5E-21 101.2 12.0 89 34-124 67-180 (185)
71 TIGR02738 TrbB type-F conjugat 99.7 2.9E-16 6.3E-21 98.1 11.2 86 34-120 49-153 (153)
72 PRK11509 hydrogenase-1 operon 99.7 8.7E-16 1.9E-20 93.0 12.8 108 14-126 18-130 (132)
73 PRK14018 trifunctional thiored 99.7 2.2E-16 4.7E-21 114.6 12.1 86 34-119 55-172 (521)
74 TIGR01130 ER_PDI_fam protein d 99.7 1.7E-16 3.7E-21 114.5 10.6 104 13-122 346-456 (462)
75 TIGR00385 dsbE periplasmic pro 99.7 5.3E-16 1.2E-20 99.1 11.1 86 34-121 62-172 (173)
76 cd03008 TryX_like_RdCVF Trypar 99.7 4.3E-16 9.3E-21 96.5 9.8 72 32-103 22-128 (146)
77 cd03010 TlpA_like_DsbE TlpA-li 99.7 6E-16 1.3E-20 94.1 10.0 83 29-112 19-126 (127)
78 KOG4277 Uncharacterized conser 99.7 1.2E-16 2.5E-21 107.6 7.0 88 34-121 42-133 (468)
79 cd02973 TRX_GRX_like Thioredox 99.7 5.9E-16 1.3E-20 84.1 8.5 63 38-102 2-64 (67)
80 cd02958 UAS UAS family; UAS is 99.7 3.8E-15 8.2E-20 89.1 12.1 100 22-121 4-112 (114)
81 KOG0190 Protein disulfide isom 99.7 1.9E-16 4.2E-21 113.3 7.0 103 13-121 366-474 (493)
82 TIGR00412 redox_disulf_2 small 99.7 1.5E-15 3.2E-20 84.6 9.1 71 39-116 2-75 (76)
83 KOG0912 Thiol-disulfide isomer 99.7 6.9E-16 1.5E-20 103.7 8.1 98 20-121 2-107 (375)
84 cd02964 TryX_like_family Trypa 99.6 1.3E-15 2.9E-20 93.2 8.4 77 28-104 10-116 (132)
85 cd03009 TryX_like_TryX_NRX Try 99.6 1.8E-15 3.9E-20 92.4 9.0 71 33-103 16-115 (131)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 7E-15 1.5E-19 84.1 10.7 75 34-112 11-86 (89)
87 PF13905 Thioredoxin_8: Thiore 99.6 2.6E-15 5.6E-20 86.9 8.9 66 35-100 1-95 (95)
88 PRK03147 thiol-disulfide oxido 99.6 1E-14 2.3E-19 92.9 12.4 86 34-119 60-171 (173)
89 PLN02919 haloacid dehalogenase 99.6 4E-15 8.8E-20 116.2 12.4 89 33-121 418-537 (1057)
90 PRK13728 conjugal transfer pro 99.6 4.3E-14 9.3E-19 90.1 11.6 83 39-122 73-173 (181)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.4E-14 5.1E-19 86.5 9.7 81 34-115 19-121 (123)
92 cd02966 TlpA_like_family TlpA- 99.6 2.6E-14 5.7E-19 84.5 9.6 73 34-106 18-116 (116)
93 PTZ00056 glutathione peroxidas 99.6 1.2E-14 2.5E-19 94.8 8.4 95 29-123 33-181 (199)
94 cd03012 TlpA_like_DipZ_like Tl 99.6 2.6E-14 5.7E-19 86.8 9.4 75 33-107 21-125 (126)
95 KOG0191 Thioredoxin/protein di 99.6 3.3E-14 7.1E-19 101.0 10.0 89 34-122 46-136 (383)
96 PF08534 Redoxin: Redoxin; In 99.6 8.6E-14 1.9E-18 86.4 10.5 75 33-107 26-134 (146)
97 cd02960 AGR Anterior Gradient 99.5 4.8E-14 1E-18 85.4 8.1 85 22-107 10-99 (130)
98 COG4232 Thiol:disulfide interc 99.5 5.4E-14 1.2E-18 102.0 9.6 103 16-120 457-568 (569)
99 cd02967 mauD Methylamine utili 99.5 1.2E-13 2.6E-18 82.3 8.8 69 35-103 21-111 (114)
100 PF02114 Phosducin: Phosducin; 99.5 9.2E-14 2E-18 93.8 8.9 107 11-119 123-237 (265)
101 PLN02399 phospholipid hydroper 99.5 4.3E-13 9.4E-18 89.1 11.3 93 29-121 93-235 (236)
102 TIGR02661 MauD methylamine deh 99.5 3.9E-13 8.4E-18 87.0 10.7 87 34-121 73-180 (189)
103 smart00594 UAS UAS domain. 99.5 6E-13 1.3E-17 80.5 10.8 97 20-116 12-121 (122)
104 PF13899 Thioredoxin_7: Thiore 99.5 1.8E-13 3.8E-18 77.2 7.4 73 23-96 5-81 (82)
105 PLN02412 probable glutathione 99.5 2.7E-13 5.9E-18 86.1 8.9 90 33-122 27-166 (167)
106 TIGR01626 ytfJ_HI0045 conserve 99.5 6.7E-13 1.5E-17 85.0 10.1 87 28-116 52-176 (184)
107 KOG0191 Thioredoxin/protein di 99.5 3.1E-13 6.8E-18 96.0 9.3 104 15-122 146-254 (383)
108 KOG1672 ATP binding protein [P 99.5 3.5E-13 7.5E-18 85.4 8.2 94 10-107 63-156 (211)
109 TIGR02540 gpx7 putative glutat 99.5 1E-12 2.2E-17 82.4 10.1 91 29-119 16-152 (153)
110 KOG1731 FAD-dependent sulfhydr 99.5 6.6E-14 1.4E-18 100.9 4.7 107 11-121 37-154 (606)
111 PF14595 Thioredoxin_9: Thiore 99.5 8.4E-13 1.8E-17 80.4 8.8 84 34-118 40-127 (129)
112 cd02969 PRX_like1 Peroxiredoxi 99.4 5.5E-12 1.2E-16 80.4 11.4 91 34-124 24-156 (171)
113 KOG0914 Thioredoxin-like prote 99.4 3E-13 6.5E-18 87.2 5.1 94 11-106 122-223 (265)
114 cd00340 GSH_Peroxidase Glutath 99.4 2.2E-12 4.7E-17 80.8 8.9 83 32-115 19-151 (152)
115 TIGR02196 GlrX_YruB Glutaredox 99.4 8.3E-12 1.8E-16 68.5 8.4 69 39-117 2-74 (74)
116 COG2143 Thioredoxin-related pr 99.3 3.3E-11 7.2E-16 74.1 10.5 87 34-120 41-149 (182)
117 PTZ00256 glutathione peroxidas 99.3 2.2E-11 4.8E-16 78.5 10.0 92 30-121 35-182 (183)
118 cd03017 PRX_BCP Peroxiredoxin 99.3 3.3E-11 7.1E-16 74.2 9.9 82 34-115 22-138 (140)
119 KOG3414 Component of the U4/U6 99.3 8.9E-11 1.9E-15 69.6 11.0 108 15-124 5-124 (142)
120 KOG2501 Thioredoxin, nucleored 99.3 8.9E-12 1.9E-16 77.1 7.0 70 34-103 32-131 (157)
121 PF06110 DUF953: Eukaryotic pr 99.3 2.6E-11 5.6E-16 72.5 8.4 96 19-117 3-118 (119)
122 PF13192 Thioredoxin_3: Thiore 99.3 1.6E-10 3.4E-15 64.2 9.9 71 41-117 4-76 (76)
123 PF13728 TraF: F plasmid trans 99.3 2E-10 4.3E-15 75.7 11.8 81 34-115 119-213 (215)
124 COG0526 TrxA Thiol-disulfide i 99.3 5.4E-11 1.2E-15 70.0 8.0 72 35-106 32-107 (127)
125 cd03014 PRX_Atyp2cys Peroxired 99.3 1.2E-10 2.6E-15 72.0 9.8 84 33-116 24-141 (143)
126 cd03015 PRX_Typ2cys Peroxiredo 99.2 3.7E-10 8E-15 72.1 11.6 87 34-120 28-157 (173)
127 PF03190 Thioredox_DsbH: Prote 99.2 1.2E-10 2.6E-15 73.0 8.9 94 26-119 28-140 (163)
128 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 1.9E-10 4.1E-15 69.3 9.3 70 33-102 23-123 (124)
129 PRK00522 tpx lipid hydroperoxi 99.2 2.9E-10 6.3E-15 72.3 10.4 77 30-106 39-149 (167)
130 TIGR03137 AhpC peroxiredoxin. 99.2 4.5E-10 9.8E-15 72.6 10.6 87 33-119 29-155 (187)
131 TIGR02200 GlrX_actino Glutared 99.2 2.2E-10 4.9E-15 63.4 8.0 70 39-117 2-76 (77)
132 PF02966 DIM1: Mitosis protein 99.2 4.1E-09 9E-14 63.3 13.0 107 15-124 2-121 (133)
133 PRK09437 bcp thioredoxin-depen 99.2 1.6E-09 3.6E-14 67.8 11.8 82 33-114 28-147 (154)
134 cd02991 UAS_ETEA UAS family, E 99.2 2.5E-09 5.4E-14 64.0 11.9 97 23-121 5-114 (116)
135 cd01659 TRX_superfamily Thiore 99.2 3.6E-10 7.8E-15 59.5 7.2 60 39-98 1-63 (69)
136 KOG0911 Glutaredoxin-related p 99.1 4.4E-11 9.6E-16 77.6 4.0 103 14-122 2-104 (227)
137 TIGR02739 TraF type-F conjugat 99.1 2.7E-09 5.8E-14 71.8 12.3 88 34-122 149-250 (256)
138 cd03018 PRX_AhpE_like Peroxire 99.1 1.7E-09 3.6E-14 67.2 10.7 83 34-116 26-147 (149)
139 PRK10606 btuE putative glutath 99.1 9.1E-10 2E-14 70.9 8.7 45 30-75 20-66 (183)
140 PRK10382 alkyl hydroperoxide r 99.1 3.9E-09 8.5E-14 68.2 11.6 88 33-120 29-156 (187)
141 PRK11200 grxA glutaredoxin 1; 99.1 2.7E-09 5.8E-14 60.5 9.3 76 38-120 2-83 (85)
142 cd02970 PRX_like2 Peroxiredoxi 99.1 2.8E-09 6E-14 66.1 10.0 43 34-76 22-67 (149)
143 PRK13190 putative peroxiredoxi 99.1 6.2E-09 1.3E-13 68.1 11.4 89 33-121 25-155 (202)
144 PRK13703 conjugal pilus assemb 99.1 9.7E-09 2.1E-13 68.8 12.2 88 34-122 142-243 (248)
145 PRK15000 peroxidase; Provision 99.0 1E-08 2.3E-13 66.9 11.2 87 34-120 33-162 (200)
146 cd02971 PRX_family Peroxiredox 99.0 4.6E-09 1E-13 64.5 9.1 75 34-108 21-130 (140)
147 KOG0913 Thiol-disulfide isomer 99.0 1.4E-10 2.9E-15 75.8 2.3 98 13-118 24-124 (248)
148 TIGR02180 GRX_euk Glutaredoxin 99.0 1.8E-09 3.8E-14 60.8 6.4 60 39-101 1-65 (84)
149 PF11009 DUF2847: Protein of u 99.0 3.2E-08 6.8E-13 57.8 11.5 95 16-112 2-104 (105)
150 KOG3425 Uncharacterized conser 99.0 6.7E-09 1.5E-13 61.2 8.5 78 19-97 10-104 (128)
151 TIGR03143 AhpF_homolog putativ 99.0 1.6E-08 3.4E-13 75.2 11.5 79 34-116 474-554 (555)
152 cd02976 NrdH NrdH-redoxin (Nrd 98.9 1.4E-08 3E-13 55.3 8.3 67 39-115 2-72 (73)
153 TIGR02183 GRXA Glutaredoxin, G 98.9 1.1E-08 2.4E-13 58.1 8.0 74 39-119 2-81 (86)
154 cd02968 SCO SCO (an acronym fo 98.9 6.9E-09 1.5E-13 63.9 7.7 42 34-75 21-68 (142)
155 PRK10877 protein disulfide iso 98.9 1.7E-08 3.7E-13 67.3 9.6 80 34-119 106-230 (232)
156 PRK13599 putative peroxiredoxi 98.9 8.6E-08 1.9E-12 63.3 11.6 87 34-120 27-156 (215)
157 PTZ00137 2-Cys peroxiredoxin; 98.9 9.3E-08 2E-12 64.7 11.6 87 34-120 97-225 (261)
158 KOG3171 Conserved phosducin-li 98.9 1.2E-08 2.6E-13 66.1 6.8 106 12-119 137-250 (273)
159 cd03016 PRX_1cys Peroxiredoxin 98.9 1.1E-07 2.3E-12 62.4 11.3 86 36-121 26-155 (203)
160 PRK13191 putative peroxiredoxi 98.9 9.2E-08 2E-12 63.2 11.0 87 34-120 32-161 (215)
161 PRK13189 peroxiredoxin; Provis 98.9 1.2E-07 2.5E-12 63.0 11.5 88 34-121 34-164 (222)
162 PF07449 HyaE: Hydrogenase-1 e 98.8 1E-07 2.3E-12 55.9 9.7 92 14-110 10-105 (107)
163 PF00462 Glutaredoxin: Glutare 98.8 7.9E-08 1.7E-12 50.8 8.2 56 39-101 1-60 (60)
164 cd03023 DsbA_Com1_like DsbA fa 98.8 6.5E-08 1.4E-12 60.1 9.1 40 34-73 4-43 (154)
165 PF01216 Calsequestrin: Calseq 98.8 2.4E-07 5.2E-12 64.1 12.3 106 11-122 32-146 (383)
166 PRK15317 alkyl hydroperoxide r 98.8 1.5E-07 3.2E-12 69.6 11.3 80 35-118 116-196 (517)
167 PTZ00253 tryparedoxin peroxida 98.8 2.7E-07 5.9E-12 60.3 11.3 90 31-120 32-164 (199)
168 PRK10329 glutaredoxin-like pro 98.8 3.7E-07 8E-12 51.2 9.9 73 38-120 2-77 (81)
169 TIGR02194 GlrX_NrdH Glutaredox 98.8 1.2E-07 2.5E-12 52.0 7.7 68 39-115 1-71 (72)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 98.7 8.5E-08 1.8E-12 62.5 8.2 76 34-116 76-197 (197)
171 PF13848 Thioredoxin_6: Thiore 98.7 8.3E-07 1.8E-11 56.8 12.1 101 13-118 77-184 (184)
172 PRK11657 dsbG disulfide isomer 98.7 2E-07 4.2E-12 63.0 9.4 82 34-117 116-249 (251)
173 PF05768 DUF836: Glutaredoxin- 98.7 4.8E-07 1E-11 50.8 9.0 77 38-117 1-81 (81)
174 TIGR03140 AhpF alkyl hydropero 98.7 6.8E-07 1.5E-11 66.1 11.4 82 34-119 116-198 (515)
175 cd03419 GRX_GRXh_1_2_like Glut 98.6 1.9E-07 4.2E-12 52.2 6.6 58 39-101 2-64 (82)
176 TIGR02190 GlrX-dom Glutaredoxi 98.6 7.6E-07 1.7E-11 49.7 8.6 61 34-101 5-68 (79)
177 KOG3170 Conserved phosducin-li 98.6 2.4E-07 5.3E-12 59.5 6.8 105 10-119 88-200 (240)
178 COG1225 Bcp Peroxiredoxin [Pos 98.6 1.3E-06 2.7E-11 54.8 9.8 92 28-119 23-155 (157)
179 KOG2603 Oligosaccharyltransfer 98.6 5.9E-07 1.3E-11 61.3 8.5 108 10-119 37-165 (331)
180 PHA03050 glutaredoxin; Provisi 98.6 1.8E-07 3.8E-12 55.4 5.4 63 38-102 14-81 (108)
181 PF13462 Thioredoxin_4: Thiore 98.6 1.8E-06 3.9E-11 54.2 10.2 80 34-118 11-162 (162)
182 cd03019 DsbA_DsbA DsbA family, 98.6 9.8E-07 2.1E-11 56.2 9.0 38 34-71 14-52 (178)
183 PRK10954 periplasmic protein d 98.6 7.9E-07 1.7E-11 58.4 8.7 39 35-73 37-79 (207)
184 TIGR02189 GlrX-like_plant Glut 98.6 2E-07 4.4E-12 54.3 5.3 58 38-102 9-73 (99)
185 cd02066 GRX_family Glutaredoxi 98.5 9.9E-07 2.1E-11 47.6 6.9 57 39-102 2-62 (72)
186 cd03029 GRX_hybridPRX5 Glutare 98.5 3.9E-06 8.4E-11 45.8 8.7 66 39-116 3-71 (72)
187 TIGR03143 AhpF_homolog putativ 98.5 4.5E-06 9.6E-11 62.4 11.4 102 20-123 353-457 (555)
188 TIGR02181 GRX_bact Glutaredoxi 98.5 1.1E-06 2.4E-11 48.8 6.2 57 39-102 1-61 (79)
189 cd03072 PDI_b'_ERp44 PDIb' fam 98.4 5.7E-06 1.2E-10 49.2 9.4 97 20-122 5-110 (111)
190 cd03027 GRX_DEP Glutaredoxin ( 98.4 3E-06 6.5E-11 46.4 7.5 57 39-102 3-63 (73)
191 cd03418 GRX_GRXb_1_3_like Glut 98.4 3.1E-06 6.7E-11 46.5 7.6 57 39-102 2-63 (75)
192 TIGR00365 monothiol glutaredox 98.4 6E-06 1.3E-10 47.9 8.7 61 35-102 11-79 (97)
193 COG0695 GrxC Glutaredoxin and 98.4 6.2E-06 1.4E-10 46.1 8.0 66 39-113 3-74 (80)
194 cd02983 P5_C P5 family, C-term 98.4 2.6E-05 5.6E-10 47.6 11.0 104 14-122 3-117 (130)
195 PRK10824 glutaredoxin-4; Provi 98.3 4.5E-06 9.7E-11 49.8 6.5 71 22-104 6-84 (115)
196 PRK10638 glutaredoxin 3; Provi 98.2 1.2E-05 2.7E-10 45.1 7.2 57 39-102 4-64 (83)
197 cd02981 PDI_b_family Protein D 98.2 3.8E-05 8.2E-10 44.2 9.3 92 16-118 2-96 (97)
198 cd03028 GRX_PICOT_like Glutare 98.2 1.6E-05 3.4E-10 45.4 7.6 60 35-101 7-74 (90)
199 PF00837 T4_deiodinase: Iodoth 98.1 0.00011 2.3E-09 48.9 9.7 108 8-119 77-236 (237)
200 cd02972 DsbA_family DsbA famil 98.0 3.2E-05 6.9E-10 43.9 6.4 58 39-96 1-91 (98)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 0.0001 2.2E-09 43.8 8.5 74 46-119 29-110 (111)
202 COG1331 Highly conserved prote 98.0 5.2E-05 1.1E-09 57.1 8.5 75 28-102 36-123 (667)
203 PTZ00062 glutaredoxin; Provisi 97.8 0.00022 4.8E-09 46.8 8.3 61 35-102 112-180 (204)
204 PRK12759 bifunctional gluaredo 97.8 0.0001 2.2E-09 53.3 7.3 58 38-102 3-72 (410)
205 PF01323 DSBA: DSBA-like thior 97.7 0.00078 1.7E-08 43.4 9.3 33 38-70 1-33 (193)
206 KOG1752 Glutaredoxin and relat 97.7 0.00039 8.5E-09 40.8 6.9 58 39-102 16-79 (104)
207 COG1651 DsbG Protein-disulfide 97.4 0.0021 4.5E-08 43.2 8.8 36 80-120 207-243 (244)
208 cd03067 PDI_b_PDIR_N PDIb fami 97.3 0.0055 1.2E-07 35.5 8.3 97 16-117 4-109 (112)
209 PF13743 Thioredoxin_5: Thiore 97.3 0.0014 3E-08 42.1 6.7 32 41-72 2-34 (176)
210 cd02974 AhpF_NTD_N Alkyl hydro 97.3 0.0099 2.2E-07 34.2 10.3 85 21-119 7-93 (94)
211 cd03013 PRX5_like Peroxiredoxi 97.3 0.0012 2.6E-08 41.5 6.1 42 34-75 28-74 (155)
212 PRK15317 alkyl hydroperoxide r 97.2 0.012 2.7E-07 43.9 11.2 87 21-121 7-95 (517)
213 COG0386 BtuE Glutathione perox 97.1 0.0065 1.4E-07 37.9 7.8 93 28-121 18-161 (162)
214 TIGR03140 AhpF alkyl hydropero 97.1 0.018 3.8E-07 43.0 11.2 88 21-121 7-96 (515)
215 KOG2792 Putative cytochrome C 97.1 0.0077 1.7E-07 40.7 8.1 96 27-122 131-277 (280)
216 cd02978 KaiB_like KaiB-like fa 97.0 0.0049 1.1E-07 33.6 5.9 58 38-95 3-62 (72)
217 cd03031 GRX_GRX_like Glutaredo 97.0 0.0082 1.8E-07 37.5 7.6 57 39-102 2-72 (147)
218 COG0450 AhpC Peroxiredoxin [Po 97.0 0.019 4.2E-07 37.2 9.1 90 31-120 29-161 (194)
219 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.029 6.2E-07 32.8 9.6 92 15-119 2-103 (104)
220 PF13848 Thioredoxin_6: Thiore 96.8 0.02 4.4E-07 36.4 8.7 63 53-120 8-75 (184)
221 cd03066 PDI_b_Calsequestrin_mi 96.7 0.045 9.7E-07 31.8 9.9 95 15-119 2-100 (102)
222 COG1999 Uncharacterized protei 96.7 0.036 7.9E-07 36.6 8.9 99 23-121 55-205 (207)
223 PHA03075 glutaredoxin-like pro 96.6 0.0055 1.2E-07 36.3 4.1 36 36-74 2-37 (123)
224 cd02990 UAS_FAF1 UAS family, F 96.5 0.082 1.8E-06 32.6 12.6 96 23-120 5-133 (136)
225 TIGR02654 circ_KaiB circadian 96.5 0.039 8.4E-07 31.2 7.0 71 36-107 3-75 (87)
226 PF07912 ERp29_N: ERp29, N-ter 96.5 0.084 1.8E-06 31.8 10.8 99 14-119 5-118 (126)
227 PRK09301 circadian clock prote 96.4 0.033 7.1E-07 32.5 6.7 79 34-113 4-86 (103)
228 KOG2507 Ubiquitin regulatory p 96.4 0.095 2.1E-06 38.0 10.2 97 23-120 7-111 (506)
229 cd03040 GST_N_mPGES2 GST_N fam 96.4 0.042 9.1E-07 29.9 6.8 71 39-120 2-76 (77)
230 COG3531 Predicted protein-disu 96.3 0.053 1.1E-06 35.4 7.7 44 78-121 164-210 (212)
231 cd02977 ArsC_family Arsenate R 96.3 0.0068 1.5E-07 35.5 3.3 33 40-77 2-34 (105)
232 cd03041 GST_N_2GST_N GST_N fam 96.2 0.08 1.7E-06 29.0 8.4 70 39-118 2-75 (77)
233 PF02630 SCO1-SenC: SCO1/SenC; 96.2 0.037 8.1E-07 35.4 6.9 46 30-75 47-97 (174)
234 PF13417 GST_N_3: Glutathione 96.1 0.085 1.8E-06 28.7 8.1 72 41-122 1-73 (75)
235 PF06764 DUF1223: Protein of u 96.1 0.15 3.2E-06 33.6 9.3 79 39-122 2-100 (202)
236 cd03060 GST_N_Omega_like GST_N 96.1 0.031 6.6E-07 30.0 5.2 57 40-100 2-59 (71)
237 cd03074 PDI_b'_Calsequestrin_C 96.0 0.15 3.2E-06 30.0 10.0 98 20-119 7-119 (120)
238 KOG2640 Thioredoxin [Function 95.9 0.0028 6.1E-08 43.8 0.8 87 34-121 75-163 (319)
239 KOG1651 Glutathione peroxidase 95.8 0.06 1.3E-06 34.1 6.2 96 26-121 25-170 (171)
240 PF06053 DUF929: Domain of unk 95.7 0.065 1.4E-06 36.3 6.5 55 34-95 57-112 (249)
241 cd00570 GST_N_family Glutathio 95.7 0.066 1.4E-06 27.8 5.5 56 40-100 2-59 (71)
242 COG5429 Uncharacterized secret 95.7 0.06 1.3E-06 36.0 6.1 84 35-121 41-142 (261)
243 cd03036 ArsC_like Arsenate Red 95.7 0.022 4.7E-07 33.8 3.7 34 40-78 2-35 (111)
244 TIGR01617 arsC_related transcr 95.6 0.03 6.6E-07 33.4 4.4 35 40-79 2-36 (117)
245 cd03068 PDI_b_ERp72 PDIb famil 95.6 0.23 4.9E-06 29.2 10.5 70 15-95 2-73 (107)
246 PRK01655 spxA transcriptional 95.6 0.035 7.6E-07 33.9 4.5 33 39-76 2-34 (131)
247 PF07689 KaiB: KaiB domain; I 95.5 0.0083 1.8E-07 33.6 1.5 54 41-94 2-57 (82)
248 COG3019 Predicted metal-bindin 95.4 0.22 4.8E-06 30.7 7.3 75 35-118 24-102 (149)
249 TIGR02742 TrbC_Ftype type-F co 95.4 0.33 7.1E-06 29.7 8.9 71 22-99 12-82 (130)
250 COG2761 FrnE Predicted dithiol 95.4 0.057 1.2E-06 36.0 5.2 43 79-125 175-218 (225)
251 cd03051 GST_N_GTT2_like GST_N 95.2 0.086 1.9E-06 28.1 5.0 52 40-94 2-57 (74)
252 cd03035 ArsC_Yffb Arsenate Red 95.1 0.038 8.3E-07 32.4 3.5 33 40-77 2-34 (105)
253 cd03037 GST_N_GRX2 GST_N famil 95.1 0.06 1.3E-06 28.8 4.0 51 41-94 3-53 (71)
254 PF06953 ArsD: Arsenical resis 94.7 0.51 1.1E-05 28.6 7.5 55 65-121 39-103 (123)
255 cd03032 ArsC_Spx Arsenate Redu 94.6 0.11 2.5E-06 30.8 4.7 34 39-77 2-35 (115)
256 cd03059 GST_N_SspA GST_N famil 94.4 0.28 6E-06 26.1 5.6 51 40-93 2-53 (73)
257 PRK12559 transcriptional regul 94.4 0.11 2.3E-06 31.9 4.2 32 39-75 2-33 (131)
258 PF09673 TrbC_Ftype: Type-F co 94.3 0.61 1.3E-05 27.7 8.7 68 21-97 10-80 (113)
259 COG3634 AhpF Alkyl hydroperoxi 94.3 0.4 8.6E-06 34.5 7.3 81 34-118 115-196 (520)
260 cd03045 GST_N_Delta_Epsilon GS 94.1 0.22 4.8E-06 26.7 4.9 52 40-94 2-57 (74)
261 PF04592 SelP_N: Selenoprotein 93.9 0.17 3.7E-06 33.9 4.7 43 34-76 25-72 (238)
262 COG4545 Glutaredoxin-related p 93.7 0.22 4.7E-06 27.4 4.1 58 40-101 5-76 (85)
263 PF00255 GSHPx: Glutathione pe 93.6 0.69 1.5E-05 27.3 6.6 82 30-116 16-107 (108)
264 cd03055 GST_N_Omega GST_N fami 93.6 0.34 7.4E-06 27.2 5.2 53 39-94 19-72 (89)
265 PRK13344 spxA transcriptional 93.2 0.23 4.9E-06 30.4 4.2 33 39-76 2-34 (132)
266 cd03024 DsbA_FrnE DsbA family, 91.9 0.27 5.9E-06 31.8 3.6 35 78-116 165-200 (201)
267 KOG0852 Alkyl hydroperoxide re 91.6 2.5 5.4E-05 27.3 8.4 93 28-120 26-161 (196)
268 PF06491 Disulph_isomer: Disul 91.4 2.2 4.7E-05 26.1 7.6 106 12-121 15-133 (136)
269 cd03052 GST_N_GDAP1 GST_N fami 90.8 1.6 3.4E-05 23.5 5.9 56 40-100 2-61 (73)
270 PF01216 Calsequestrin: Calseq 90.2 5.4 0.00012 28.7 10.4 105 15-122 251-370 (383)
271 COG5494 Predicted thioredoxin/ 90.2 1.8 3.9E-05 28.8 6.0 71 41-118 15-86 (265)
272 cd03056 GST_N_4 GST_N family, 89.8 1.8 4E-05 22.8 6.0 55 41-100 3-61 (73)
273 cd03025 DsbA_FrnE_like DsbA fa 89.7 0.6 1.3E-05 29.9 3.7 26 39-64 3-28 (193)
274 cd03022 DsbA_HCCA_Iso DsbA fam 89.2 0.52 1.1E-05 30.2 3.1 32 79-115 158-190 (192)
275 cd03033 ArsC_15kD Arsenate Red 88.5 1 2.2E-05 26.8 3.7 33 39-76 2-34 (113)
276 PRK13730 conjugal transfer pil 88.0 1.3 2.9E-05 29.2 4.3 33 77-110 151-184 (212)
277 KOG1422 Intracellular Cl- chan 87.5 6.1 0.00013 26.3 7.0 69 46-124 20-89 (221)
278 PF05988 DUF899: Bacterial pro 87.1 5.6 0.00012 26.5 6.8 81 23-106 59-174 (211)
279 cd03061 GST_N_CLIC GST_N famil 85.8 4.8 0.0001 23.0 6.6 66 45-120 20-86 (91)
280 KOG0855 Alkyl hydroperoxide re 85.2 1.1 2.4E-05 28.7 2.7 43 34-76 89-134 (211)
281 PF04134 DUF393: Protein of un 85.1 1.9 4E-05 25.3 3.6 57 42-99 2-61 (114)
282 PF13778 DUF4174: Domain of un 84.8 6.3 0.00014 23.5 8.7 76 44-119 19-111 (118)
283 TIGR00014 arsC arsenate reduct 84.8 1.9 4.1E-05 25.6 3.5 33 40-77 2-34 (114)
284 COG3411 Ferredoxin [Energy pro 84.1 3.7 8E-05 21.8 4.0 30 89-122 17-47 (64)
285 KOG2244 Highly conserved prote 84.0 0.79 1.7E-05 34.8 2.0 68 28-95 105-184 (786)
286 cd03053 GST_N_Phi GST_N family 83.8 4.8 0.0001 21.4 4.9 52 39-93 2-57 (76)
287 cd03034 ArsC_ArsC Arsenate Red 83.8 2.2 4.8E-05 25.2 3.5 32 40-76 2-33 (112)
288 COG0821 gcpE 1-hydroxy-2-methy 81.1 6.6 0.00014 28.1 5.4 78 46-123 263-354 (361)
289 COG3011 Predicted thiol-disulf 80.7 11 0.00024 23.3 6.6 68 34-102 5-74 (137)
290 PRK09481 sspA stringent starva 80.5 10 0.00022 24.8 6.1 60 35-99 7-67 (211)
291 cd03021 DsbA_GSTK DsbA family, 79.5 2.3 4.9E-05 27.9 2.8 36 80-115 171-207 (209)
292 COG0278 Glutaredoxin-related p 79.3 10 0.00022 22.2 6.4 72 22-102 6-83 (105)
293 PF11287 DUF3088: Protein of u 79.0 4.6 0.0001 24.0 3.6 51 46-96 23-76 (112)
294 cd03049 GST_N_3 GST_N family, 77.9 7.7 0.00017 20.4 4.2 57 41-99 3-60 (73)
295 PF04908 SH3BGR: SH3-binding, 76.7 9.2 0.0002 22.2 4.4 41 40-80 3-45 (99)
296 cd03025 DsbA_FrnE_like DsbA fa 76.5 2.8 6E-05 26.8 2.5 21 79-99 160-180 (193)
297 COG1393 ArsC Arsenate reductas 76.4 6.4 0.00014 23.6 3.8 21 39-59 3-23 (117)
298 PF07511 DUF1525: Protein of u 75.3 11 0.00023 22.6 4.5 36 80-119 75-111 (114)
299 PF03960 ArsC: ArsC family; I 74.5 9.3 0.0002 22.3 4.2 31 42-77 1-31 (110)
300 PRK10853 putative reductase; P 74.4 6.5 0.00014 23.5 3.5 32 39-75 2-33 (118)
301 PF09695 YtfJ_HI0045: Bacteria 74.2 20 0.00043 22.8 8.8 86 33-118 35-156 (160)
302 PF04551 GcpE: GcpE protein; 73.6 3.6 7.9E-05 29.5 2.6 81 34-119 263-358 (359)
303 PF08806 Sep15_SelM: Sep15/Sel 73.6 6.7 0.00014 21.7 3.2 33 87-119 40-75 (78)
304 PRK00366 ispG 4-hydroxy-3-meth 73.4 18 0.00039 26.2 5.9 103 13-119 244-356 (360)
305 cd03030 GRX_SH3BGR Glutaredoxi 72.3 16 0.00034 20.9 6.7 36 65-102 29-72 (92)
306 cd03044 GST_N_EF1Bgamma GST_N 71.5 13 0.00029 19.7 4.5 51 41-94 3-56 (75)
307 cd03058 GST_N_Tau GST_N family 71.4 13 0.00029 19.6 5.6 51 41-94 3-55 (74)
308 TIGR01616 nitro_assoc nitrogen 70.7 11 0.00024 22.9 3.9 32 39-75 3-34 (126)
309 PF14424 Toxin-deaminase: The 70.5 22 0.00048 21.8 5.4 31 40-73 99-131 (133)
310 PF09822 ABC_transp_aux: ABC-t 69.4 33 0.00072 23.4 12.9 57 34-90 23-90 (271)
311 PRK10026 arsenate reductase; P 69.0 12 0.00026 23.3 3.9 32 39-75 4-35 (141)
312 PRK10387 glutaredoxin 2; Provi 68.7 19 0.0004 23.3 5.0 51 41-94 3-53 (210)
313 TIGR03757 conj_TIGR03757 integ 68.4 18 0.00039 21.6 4.3 31 80-114 76-107 (113)
314 COG2761 FrnE Predicted dithiol 67.2 20 0.00043 24.2 4.8 31 35-65 3-34 (225)
315 cd03062 TRX_Fd_Sucrase TRX-lik 65.4 16 0.00036 20.9 3.8 32 87-122 51-85 (97)
316 TIGR00612 ispG_gcpE 1-hydroxy- 65.1 6 0.00013 28.3 2.2 89 13-105 235-333 (346)
317 cd03054 GST_N_Metaxin GST_N fa 64.6 19 0.00041 18.9 5.3 44 45-99 14-57 (72)
318 TIGR02182 GRXB Glutaredoxin, G 64.4 26 0.00056 22.9 5.1 52 42-99 3-56 (209)
319 PF00352 TBP: Transcription fa 62.5 22 0.00048 19.8 3.9 32 89-122 49-81 (86)
320 KOG0854 Alkyl hydroperoxide re 61.7 20 0.00044 23.4 3.9 44 33-76 29-76 (224)
321 cd03024 DsbA_FrnE DsbA family, 61.2 16 0.00034 23.5 3.6 25 41-65 3-27 (201)
322 cd03050 GST_N_Theta GST_N fami 60.8 24 0.00051 18.7 6.1 54 41-99 3-60 (76)
323 KOG0912 Thiol-disulfide isomer 60.8 60 0.0013 23.3 7.1 102 14-120 211-319 (375)
324 TIGR03759 conj_TIGR03759 integ 57.9 49 0.0011 21.9 5.3 39 34-75 107-145 (200)
325 KOG1364 Predicted ubiquitin re 57.6 18 0.00038 26.1 3.4 56 67-122 133-191 (356)
326 cd03022 DsbA_HCCA_Iso DsbA fam 55.8 16 0.00035 23.2 2.9 30 41-70 3-33 (192)
327 COG4312 Uncharacterized protei 54.7 42 0.00091 22.7 4.6 51 21-74 63-120 (247)
328 PF05679 CHGN: Chondroitin N-a 53.3 99 0.0021 23.5 7.2 72 24-95 270-347 (499)
329 cd03038 GST_N_etherase_LigE GS 51.7 20 0.00044 19.4 2.6 65 45-118 14-81 (84)
330 PF14097 SpoVAE: Stage V sporu 50.1 27 0.00058 22.6 3.1 34 9-45 29-62 (180)
331 TIGR03439 methyl_EasF probable 49.9 48 0.001 23.6 4.7 40 35-77 76-115 (319)
332 PF07700 HNOB: Heme NO binding 49.3 66 0.0014 20.4 5.0 41 34-74 126-168 (171)
333 cd03042 GST_N_Zeta GST_N famil 48.9 38 0.00082 17.5 4.6 50 42-94 4-57 (73)
334 TIGR01287 nifH nitrogenase iro 48.1 35 0.00075 23.3 3.7 51 34-86 220-270 (275)
335 KOG4498 Uncharacterized conser 48.1 63 0.0014 21.3 4.6 40 34-73 50-91 (197)
336 TIGR02743 TraW type-F conjugat 47.2 28 0.0006 23.1 3.0 26 75-101 172-197 (202)
337 TIGR00862 O-ClC intracellular 46.9 79 0.0017 21.4 5.2 65 45-119 17-82 (236)
338 PF12617 LdpA_C: Iron-Sulfur b 46.6 82 0.0018 20.6 5.2 72 49-120 19-97 (183)
339 PF03227 GILT: Gamma interfero 46.4 15 0.00033 21.5 1.6 21 39-59 3-24 (108)
340 cd07973 Spt4 Transcription elo 45.9 35 0.00077 19.8 2.9 68 42-118 18-93 (98)
341 COG2101 SPT15 TATA-box binding 44.9 78 0.0017 20.6 4.6 30 91-122 55-85 (185)
342 PF14437 MafB19-deam: MafB19-l 44.3 80 0.0017 19.9 5.5 35 35-72 99-135 (146)
343 PRK15113 glutathione S-transfe 44.3 88 0.0019 20.4 6.8 56 36-94 3-64 (214)
344 KOG3029 Glutathione S-transfer 43.4 50 0.0011 23.4 3.8 21 37-57 89-109 (370)
345 TIGR02652 conserved hypothetic 43.0 8.9 0.00019 23.8 0.2 12 46-57 11-22 (163)
346 PRK13738 conjugal transfer pil 42.9 31 0.00068 23.0 2.7 27 75-101 170-197 (209)
347 PHA02151 hypothetical protein 42.6 18 0.00039 23.0 1.5 15 34-48 202-216 (217)
348 PF09654 DUF2396: Protein of u 42.6 8.8 0.00019 23.8 0.1 12 46-57 8-19 (161)
349 PF07315 DUF1462: Protein of u 42.6 66 0.0014 18.5 6.5 67 46-116 8-92 (93)
350 cd03048 GST_N_Ure2p_like GST_N 42.2 55 0.0012 17.4 4.6 50 42-94 4-57 (81)
351 KOG2990 C2C2-type Zn-finger pr 41.8 24 0.00051 24.7 2.1 23 34-56 39-64 (317)
352 cd04518 TBP_archaea archaeal T 41.6 89 0.0019 20.2 4.6 29 91-121 140-169 (174)
353 cd03039 GST_N_Sigma_like GST_N 41.5 53 0.0012 17.0 3.4 50 42-94 4-55 (72)
354 PLN02378 glutathione S-transfe 41.4 88 0.0019 20.4 4.7 47 45-94 18-65 (213)
355 KOG0868 Glutathione S-transfer 41.2 15 0.00033 24.0 1.0 61 34-101 3-68 (217)
356 PRK11752 putative S-transferas 40.9 98 0.0021 21.2 5.0 53 42-94 47-106 (264)
357 PF07351 DUF1480: Protein of u 39.8 40 0.00087 18.6 2.4 33 66-101 25-61 (80)
358 COG2077 Tpx Peroxiredoxin [Pos 39.5 1E+02 0.0022 19.6 4.9 42 34-75 43-85 (158)
359 PF14307 Glyco_tran_WbsX: Glyc 39.2 1E+02 0.0022 22.1 5.0 41 34-74 157-199 (345)
360 PF09936 Methyltrn_RNA_4: SAM- 38.9 48 0.001 21.7 3.0 24 20-46 120-143 (185)
361 PRK13818 ribosome-binding fact 38.7 89 0.0019 18.8 4.3 39 79-124 77-116 (121)
362 cd00652 TBP_TLF TATA box bindi 38.6 1E+02 0.0022 19.8 4.6 30 90-121 48-78 (174)
363 PF11072 DUF2859: Protein of u 38.2 53 0.0011 20.5 3.1 17 78-94 121-137 (142)
364 PF07293 DUF1450: Protein of u 38.2 73 0.0016 17.7 4.0 59 55-124 18-76 (78)
365 COG1198 PriA Primosomal protei 38.1 1.2E+02 0.0027 24.4 5.6 21 57-77 497-517 (730)
366 PF14639 YqgF: Holliday-juncti 37.6 69 0.0015 20.1 3.6 37 23-64 54-90 (150)
367 TIGR03765 ICE_PFL_4695 integra 37.3 49 0.0011 19.5 2.6 36 56-94 64-99 (105)
368 PF05176 ATP-synt_10: ATP10 pr 37.2 1.4E+02 0.003 20.6 8.0 40 79-118 205-248 (252)
369 COG1519 KdtA 3-deoxy-D-manno-o 36.9 1.8E+02 0.0039 21.8 7.2 35 39-73 51-85 (419)
370 PRK00394 transcription factor; 36.6 1.2E+02 0.0025 19.7 4.6 29 91-121 141-170 (179)
371 cd04516 TBP_eukaryotes eukaryo 36.5 1.2E+02 0.0026 19.6 4.6 29 91-121 49-78 (174)
372 PLN00062 TATA-box-binding prot 36.0 1.2E+02 0.0027 19.7 4.7 29 91-121 140-169 (179)
373 TIGR00595 priA primosomal prot 35.4 78 0.0017 24.1 4.1 23 54-76 272-294 (505)
374 cd03021 DsbA_GSTK DsbA family, 35.2 1.2E+02 0.0027 19.7 4.7 34 39-72 3-37 (209)
375 COG2999 GrxB Glutaredoxin 2 [P 34.5 33 0.00072 22.5 1.8 46 45-93 7-52 (215)
376 cd06538 CIDE_N_FSP27 CIDE_N do 34.5 73 0.0016 17.8 2.9 24 79-102 29-52 (79)
377 cd06403 PB1_Par6 The PB1 domai 34.3 79 0.0017 17.7 3.0 25 12-40 50-74 (80)
378 PF02310 B12-binding: B12 bind 34.2 96 0.0021 17.9 4.2 48 22-73 41-88 (121)
379 cd03071 PDI_b'_NRX PDIb' famil 34.2 1.1E+02 0.0023 18.3 8.0 87 34-120 13-115 (116)
380 PLN02473 glutathione S-transfe 33.9 1.3E+02 0.0029 19.4 6.4 55 41-100 5-63 (214)
381 COG4752 Uncharacterized protei 33.2 67 0.0014 20.4 2.9 27 20-49 121-147 (190)
382 cd03076 GST_N_Pi GST_N family, 33.2 79 0.0017 16.6 4.9 54 41-99 4-58 (73)
383 PTZ00151 translationally contr 33.0 50 0.0011 21.4 2.4 43 58-100 123-168 (172)
384 cd06537 CIDE_N_B CIDE_N domain 33.0 60 0.0013 18.2 2.4 24 79-102 29-52 (81)
385 PLN02817 glutathione dehydroge 32.6 97 0.0021 21.3 4.0 47 45-94 71-118 (265)
386 PF11453 DUF2950: Protein of u 32.6 58 0.0013 22.7 2.8 39 81-119 224-262 (271)
387 PRK09702 PTS system arbutin-sp 32.0 1.4E+02 0.003 19.1 5.2 32 96-127 122-153 (161)
388 PRK08351 DNA-directed RNA poly 31.5 66 0.0014 17.0 2.3 40 44-91 15-54 (61)
389 PRK14811 formamidopyrimidine-D 31.0 9.8 0.00021 26.3 -1.1 10 46-55 257-266 (269)
390 cd04517 TLF TBP-like factors ( 30.7 1.5E+02 0.0033 19.1 4.7 30 90-121 48-78 (174)
391 PRK13669 hypothetical protein; 30.5 1E+02 0.0023 17.1 4.1 56 57-123 20-75 (78)
392 COG4604 CeuD ABC-type enteroch 30.2 1.8E+02 0.0039 19.8 5.5 48 48-103 169-217 (252)
393 COG0266 Nei Formamidopyrimidin 30.1 13 0.00027 25.9 -0.6 6 46-51 267-272 (273)
394 KOG0911 Glutaredoxin-related p 29.7 1.5E+02 0.0034 20.1 4.3 64 34-102 137-206 (227)
395 PF09547 Spore_IV_A: Stage IV 29.6 1.6E+02 0.0035 22.4 4.7 41 34-76 179-219 (492)
396 KOG3160 Gamma-interferon induc 29.4 50 0.0011 22.2 2.1 30 34-63 38-68 (220)
397 PF06279 DUF1033: Protein of u 27.5 60 0.0013 19.7 2.0 28 34-61 56-87 (120)
398 COG0625 Gst Glutathione S-tran 27.4 1.5E+02 0.0033 19.1 4.1 51 41-94 3-56 (211)
399 TIGR00216 ispH_lytB (E)-4-hydr 27.1 2.3E+02 0.0049 20.0 5.7 76 41-120 186-277 (280)
400 PF13409 GST_N_2: Glutathione 27.1 1E+02 0.0022 16.0 6.8 65 46-117 1-68 (70)
401 cd06539 CIDE_N_A CIDE_N domain 26.3 1.2E+02 0.0026 16.9 2.9 24 79-102 29-53 (78)
402 KOG1731 FAD-dependent sulfhydr 25.4 1.2E+02 0.0026 23.8 3.6 43 79-122 228-271 (606)
403 PF00708 Acylphosphatase: Acyl 25.3 1.3E+02 0.0029 16.7 4.6 44 78-124 24-67 (91)
404 cd03047 GST_N_2 GST_N family, 25.1 1.1E+02 0.0025 15.8 4.6 51 41-94 3-57 (73)
405 PRK01103 formamidopyrimidine/5 25.0 17 0.00036 25.2 -0.8 6 46-51 267-272 (274)
406 PF05673 DUF815: Protein of un 23.8 1.3E+02 0.0029 20.7 3.3 82 36-123 52-138 (249)
407 PF06220 zf-U1: U1 zinc finger 23.7 28 0.0006 16.3 0.1 10 45-54 4-13 (38)
408 PRK14810 formamidopyrimidine-D 23.6 20 0.00044 24.8 -0.6 6 46-51 266-271 (272)
409 cd00317 cyclophilin cyclophili 23.4 1.8E+02 0.004 17.6 3.8 38 35-74 6-44 (146)
410 COG0295 Cdd Cytidine deaminase 23.3 52 0.0011 20.3 1.2 44 24-74 61-110 (134)
411 PF04502 DUF572: Family of unk 23.0 56 0.0012 23.3 1.5 21 34-54 27-50 (324)
412 PF10865 DUF2703: Domain of un 22.9 1.9E+02 0.0041 17.5 4.7 54 45-103 13-74 (120)
413 KOG4277 Uncharacterized conser 22.9 3E+02 0.0065 19.9 8.9 97 13-118 133-229 (468)
414 PHA02513 V1 structural protein 22.8 51 0.0011 19.7 1.1 28 41-68 33-60 (135)
415 cd03375 TPP_OGFOR Thiamine pyr 22.8 2E+02 0.0043 18.6 4.0 26 18-43 157-182 (193)
416 COG1775 HgdB Benzoyl-CoA reduc 22.8 1.5E+02 0.0033 21.8 3.6 49 46-94 299-355 (379)
417 PF09608 Alph_Pro_TM: Putative 22.5 1.5E+02 0.0033 20.2 3.4 34 91-124 175-211 (236)
418 PLN02402 cytidine deaminase 22.1 1.5E+02 0.0032 21.2 3.4 22 36-57 93-114 (303)
419 PF08599 Nbs1_C: DNA damage re 22.0 88 0.0019 16.6 1.7 34 85-121 14-47 (65)
420 PF09363 XFP_C: XFP C-terminal 21.9 1.1E+02 0.0025 20.3 2.6 22 20-45 88-109 (203)
421 PF09885 DUF2112: Uncharacteri 21.5 2E+02 0.0044 17.9 3.4 30 46-76 95-124 (143)
422 PF02702 KdpD: Osmosensitive K 21.3 2.7E+02 0.0059 18.8 8.2 69 34-102 3-72 (211)
423 TIGR02949 anti_SigH_actin anti 21.3 1E+02 0.0022 17.1 2.1 18 46-63 38-55 (84)
424 KOG3654 Uncharacterized CH dom 21.2 17 0.00037 27.6 -1.3 60 2-64 550-609 (708)
425 PRK13945 formamidopyrimidine-D 21.1 24 0.00052 24.5 -0.6 6 46-51 276-281 (282)
426 COG3265 GntK Gluconate kinase 21.1 1.7E+02 0.0036 18.8 3.1 29 49-77 73-102 (161)
427 PF15379 DUF4606: Domain of un 21.0 1.1E+02 0.0023 18.1 2.1 15 44-58 31-45 (104)
428 PF08671 SinI: Anti-repressor 20.7 1E+02 0.0022 13.7 1.6 14 105-118 15-28 (30)
429 PRK14489 putative bifunctional 20.6 3.4E+02 0.0074 19.7 9.2 87 14-100 180-274 (366)
430 KOG0733 Nuclear AAA ATPase (VC 20.5 3.8E+02 0.0083 21.7 5.4 57 36-97 545-612 (802)
431 PF06180 CbiK: Cobalt chelatas 20.5 2.1E+02 0.0046 19.8 3.8 34 38-71 4-38 (262)
432 cd03070 PDI_b_ERp44 PDIb famil 20.4 1.9E+02 0.004 16.5 4.0 50 16-73 2-52 (91)
433 COG1744 Med Uncharacterized AB 20.4 3.1E+02 0.0067 19.8 4.8 23 52-74 107-129 (345)
434 PRK06393 rpoE DNA-directed RNA 20.4 84 0.0018 16.7 1.5 44 44-95 17-60 (64)
435 KOG1085 Predicted methyltransf 20.2 3E+02 0.0065 19.7 4.5 88 13-113 287-385 (392)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=149.66 Aligned_cols=105 Identities=34% Similarity=0.624 Sum_probs=97.3
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
....+.+.++|++.+.. .+.||+|.|||+||++|+.+.|.++++..++ ..+.|+++|.|++++++.+|+|+.+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 45556688899987775 7899999999999999999999999999999 6799999999999999999999999999
Q ss_pred EEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 93 ILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 93 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
++|++|+..+++.|. +.+.|.++|++++.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999 99999999999875
No 2
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.95 E-value=8.2e-27 Score=137.36 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch---hHHHhcCCcccCeEEEee
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK---VVASKMEIKAMPTFILMK 96 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~Pt~~~~~ 96 (128)
+.+++++.+..+ +++++||.||++||++|+.+.|.+++++++++++.|+.||.+++. .++.+|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 577889988754 689999999999999999999999999999988999999999874 789999999999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHHHH
Q 033073 97 EGALVDKLVGANPQAIRKMINGF 119 (128)
Q Consensus 97 ~g~~~~~~~g~~~~~l~~~i~~~ 119 (128)
+|+.+.++.|.++++|.+.+.++
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999998887653
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.9e-27 Score=136.88 Aligned_cols=100 Identities=43% Similarity=0.693 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCe
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
+.++++.....+...++++||+|||+||++|+.+.|.+.+|+.+|+++.|+.+|+|+...++..++|..+|||++|++|+
T Consensus 6 ~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred ehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE
Confidence 33444444444433679999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHH
Q 033073 100 LVDKLVGANPQAIRKMINGF 119 (128)
Q Consensus 100 ~~~~~~g~~~~~l~~~i~~~ 119 (128)
.+.++.|.+.+++++.|.++
T Consensus 86 ~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 86 EVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred EEEEEecCCHHHHHHHHHhc
Confidence 99999999998888887654
No 4
>PHA02278 thioredoxin-like protein
Probab=99.95 E-value=2.7e-26 Score=134.65 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=83.1
Q ss_pred CChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccc----hhHHHhcCCcccCeEE
Q 033073 19 NSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEV----KVVASKMEIKAMPTFI 93 (128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~----~~~~~~~~v~~~Pt~~ 93 (128)
++.++|.+.+. ++++++|+|||+||++|+.+.|.++++++++ .++.|+.+|++.+ +.++.+|+|.++||++
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 46778888886 8999999999999999999999999999875 4578999999976 6899999999999999
Q ss_pred EeeCCeEEEEEeCC-CHHHHHHH
Q 033073 94 LMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 94 ~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
+|++|+.+.+..|. +.+.+.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 77777654
No 5
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.94 E-value=8.5e-26 Score=132.81 Aligned_cols=97 Identities=25% Similarity=0.486 Sum_probs=89.3
Q ss_pred ecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 17 RVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 17 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
.+.+.+++.+.+. .+++++|+|||+||++|+.+.|.++++++.++ .+.|+.+|.+ ++.++++|+|.++||+++
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 4668889999886 78999999999999999999999999999984 4889999999 778999999999999999
Q ss_pred eeCCeEEEEEeCCCHHHHHHHHHH
Q 033073 95 MKEGALVDKLVGANPQAIRKMING 118 (128)
Q Consensus 95 ~~~g~~~~~~~g~~~~~l~~~i~~ 118 (128)
|++|+.+.+..|.+++.+.++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999999999875
No 6
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.94 E-value=2.5e-26 Score=136.03 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccCeEEEeeCCe
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.+++++.+... .++++||.|||+||++|+.+.|.+++++.++++ +.|++||+++++.++.+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 46777777643 588999999999999999999999999999965 799999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 033073 100 LVDKLVGA 107 (128)
Q Consensus 100 ~~~~~~g~ 107 (128)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99888775
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=2.4e-25 Score=130.61 Aligned_cols=100 Identities=33% Similarity=0.631 Sum_probs=93.7
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
..+ +.++|++.+.. .+++++|+||++||++|+.+.|.++++++.++ ++.|+.+|+++++.++++|++.++||+++
T Consensus 2 ~~l-t~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 2 IVL-TDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp EEE-STTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred EEC-CHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEE
Confidence 445 88999999984 38999999999999999999999999999996 89999999999999999999999999999
Q ss_pred eeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 95 MKEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 95 ~~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
|++|+...++.|. +.+.|.+||+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999 999999999875
No 8
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.94 E-value=1.7e-25 Score=137.03 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=96.6
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+..+.+.+++++.+..+ .++++||.|||+||++|+.+.|.|+++++++++ +.|+.||+|++++++..|+|.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 45678899999999755 789999999999999999999999999999966 888999999999999999999887666
Q ss_pred -EeeCCe-EEEEEeC--------C-CHHHHHHHHHHHHhhhhc
Q 033073 94 -LMKEGA-LVDKLVG--------A-NPQAIRKMINGFIHSVRL 125 (128)
Q Consensus 94 -~~~~g~-~~~~~~g--------~-~~~~l~~~i~~~~~~~~~ 125 (128)
+|++|+ .+++..| . +.++|...++.+++.+..
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~ 125 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence 889998 8898888 5 789999999998876554
No 9
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.9e-26 Score=151.59 Aligned_cols=110 Identities=25% Similarity=0.513 Sum_probs=100.1
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCccc
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
....++++ |..+|.+.+..++ ..+||+|+||+|||++|+.+.|.+++++..+ +.+.+++||+|..+.++.+|||+++
T Consensus 21 ~a~~I~dv-T~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsI 98 (304)
T COG3118 21 AAPGIKDV-TEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSI 98 (304)
T ss_pred ccccceec-hHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcC
Confidence 33448888 8889998777664 6779999999999999999999999999999 6799999999999999999999999
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
||++.|++|+.++.+.|. ..+.+++|+++++..
T Consensus 99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999 667999999998765
No 10
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.8e-26 Score=146.72 Aligned_cols=110 Identities=34% Similarity=0.611 Sum_probs=104.6
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
++|+.|.+..+|+..+..+ ..+.++|+|+|.||++|+...|.+.+|+.+|++..|++||+|+.+.++.-+||...|||
T Consensus 1 m~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred CCeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceE
Confidence 5789999999999999976 78899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeEEEEEeCCCHHHHHHHHHHHHhhhh
Q 033073 93 ILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124 (128)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~ 124 (128)
++|++|..++++.|+++..|++.|.+++...+
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999987654
No 11
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=3e-25 Score=132.15 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=88.8
Q ss_pred cccceeecCChhhHHHHHH-HHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHH-HhcCCc
Q 033073 11 MKSRVARVNSEKSWDLFIT-KATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVA-SKMEIK 87 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~-~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~-~~~~v~ 87 (128)
..+.++++ +.++|++.+. .. .+++++|.|||+||++|+.+.|.++++++.++ .+.|+.||++++..++ ++|+|.
T Consensus 7 ~~~~v~~l-~~~~f~~~~~v~~--~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 7 QRSPVLDF-YKGQLDYAEELRT--DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCCeEEe-chhhhHHHHhccc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 34668888 8888888632 11 78999999999999999999999999999984 5899999999999998 589999
Q ss_pred ccCeEEEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 88 AMPTFILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 88 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
++||+++|++|+....+.|. +.+.|..|
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 99999999999888888888 88888776
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.93 E-value=3.9e-25 Score=129.77 Aligned_cols=97 Identities=14% Similarity=0.293 Sum_probs=87.9
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
.++.+ +.++|++.+. .+++++|.||++||++|+.+.|.++++++.+ ..+.|+.||+++++.++++++|.++||+
T Consensus 2 ~~~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 46677 7889999886 6799999999999999999999999999999 4689999999999999999999999999
Q ss_pred EEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 93 ILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 93 ~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
++|++|+.+..+.|. +.+.|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999988888888 88887765
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.93 E-value=4.2e-25 Score=130.23 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=88.5
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
+++++ +.++|++.+.. .+++++|.||++||++|+.+.|.++++++++ +.+.|+.+|+++++.++++|+|.++||+
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 46677 78899988764 5679999999999999999999999999998 5699999999999999999999999999
Q ss_pred EEeeCC-eEEEEEeCC-C-HHHHHHHH
Q 033073 93 ILMKEG-ALVDKLVGA-N-PQAIRKMI 116 (128)
Q Consensus 93 ~~~~~g-~~~~~~~g~-~-~~~l~~~i 116 (128)
++|++| +.+..+.|. + .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999887 888888887 6 88888774
No 14
>PRK10996 thioredoxin 2; Provisional
Probab=99.93 E-value=2.5e-24 Score=132.96 Aligned_cols=104 Identities=25% Similarity=0.550 Sum_probs=94.1
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccC
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
...++++ +.+++++.+. .+++++|+||++||++|+.+.+.++++++++ .++.|+.+|.++++.++.+|+|.++|
T Consensus 34 ~~~~i~~-~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINA-TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP 108 (139)
T ss_pred CCCCEEc-CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccC
Confidence 3455666 7888998876 7899999999999999999999999999988 57999999999999999999999999
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
|+++|++|+.+.++.|. +.+.+.+||++++
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999998 8899999998763
No 15
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.93 E-value=1e-24 Score=130.30 Aligned_cols=92 Identities=28% Similarity=0.447 Sum_probs=85.9
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
.+.+.+|.+.+++.+.+. .+++++|+||++||++|+.+.|.+++++++++++.|++||.+.++.++++|+|.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 467888978899999997 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEeCC
Q 033073 92 FILMKEGALVDKLVGA 107 (128)
Q Consensus 92 ~~~~~~g~~~~~~~g~ 107 (128)
+++|++|++++++.|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999888665
No 16
>PRK09381 trxA thioredoxin; Provisional
Probab=99.93 E-value=1.8e-24 Score=128.56 Aligned_cols=104 Identities=23% Similarity=0.527 Sum_probs=94.1
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
..++++ +.+++.+.+.. .+++++|+||++||++|+.+.|.++++++.+ +++.|+.+|++..+.++.+|++.++||
T Consensus 3 ~~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred Ccceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 457778 67888876543 6889999999999999999999999999999 569999999999999999999999999
Q ss_pred EEEeeCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 92 FILMKEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 92 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
+++|++|+++..+.|. +.++|..+|++.+
T Consensus 79 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999999999999888 8999999998875
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.93 E-value=1.1e-24 Score=126.63 Aligned_cols=93 Identities=28% Similarity=0.500 Sum_probs=84.0
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEE
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
+|++.+..+ .+++++|+||++||++|+.+.|.+++++..+ ..+.++.+|++.++.++.+|++.++||+++|++|+.+
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 567777643 5789999999999999999999999999998 4689999999999999999999999999999999999
Q ss_pred EEEeCC-CHHHHHHHHH
Q 033073 102 DKLVGA-NPQAIRKMIN 117 (128)
Q Consensus 102 ~~~~g~-~~~~l~~~i~ 117 (128)
..+.|. +.++|..+|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999888 8899988874
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.5e-24 Score=130.11 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=92.6
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChh--hH--HhhHHHHHHHHHc---CCeEEEEEEcccchhHHHhcC
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMP--SV--AMNHFFEELASTY---QDILFLSVDVDEVKVVASKME 85 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~--~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~~~~ 85 (128)
..+..+ +.++|++.+.+ ++.++|++||+.||++ |+ .+.|.+.+++.++ .++.|++||+++++.++.+|+
T Consensus 9 ~~v~~l-t~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~ 84 (120)
T cd03065 9 DRVIDL-NEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG 84 (120)
T ss_pred cceeeC-ChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC
Confidence 367777 78999998885 6779999999999977 99 8889999999987 469999999999999999999
Q ss_pred CcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 86 IKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 86 v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
|.++||+++|++|+.+. +.|. +.+.|.+||++++
T Consensus 85 I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 LDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999887 8888 9999999999875
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=1.8e-24 Score=128.98 Aligned_cols=99 Identities=12% Similarity=0.300 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEcccchhHHHhcCCcccCeEEEeeC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 97 (128)
+..++.+.+... ..+++++|+||++||++|+.+.|.++++++.++ ++.|+.||++.++.++.+++|.++||+++|++
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 556676544321 168999999999999999999999999999983 69999999999999999999999999999999
Q ss_pred CeEEEEEeCC-CHHHHHHHHHHH
Q 033073 98 GALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 98 g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
|+.+.+..|. +.+.|.++|+++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999897 899999998763
No 20
>PTZ00051 thioredoxin; Provisional
Probab=99.92 E-value=4.1e-24 Score=124.68 Aligned_cols=96 Identities=40% Similarity=0.713 Sum_probs=89.0
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
+.++.+.+++.+.+. .+++++|+||++||++|+.+.+.++++++.++++.|+.+|.+++..++.+|++.++||+++
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 567878889988887 7899999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEeCCCHHHHHH
Q 033073 95 MKEGALVDKLVGANPQAIRK 114 (128)
Q Consensus 95 ~~~g~~~~~~~g~~~~~l~~ 114 (128)
|++|+.+.++.|...++|.+
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCCCHHHhhc
Confidence 99999999999998877754
No 21
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.92 E-value=2.5e-24 Score=127.73 Aligned_cols=98 Identities=23% Similarity=0.448 Sum_probs=85.9
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----C---CeEEEEEEcccchhHHHhcCC
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----Q---DILFLSVDVDEVKVVASKMEI 86 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~---~~~~~~v~~~~~~~~~~~~~v 86 (128)
+++++ +.+++++.+. .+++++|+||++||++|+.+.|.++++++.+ + .+.|+.+|++.++.++.+|+|
T Consensus 2 ~v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred ceEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 57778 8889999886 6889999999999999999999999988764 1 489999999999999999999
Q ss_pred cccCeEEEeeCCeE-EEEEeCC-CHHHHHHHH
Q 033073 87 KAMPTFILMKEGAL-VDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 87 ~~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i 116 (128)
.++||+++|++|+. ...+.|. +.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999999999984 4666677 888888775
No 22
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.92 E-value=1.9e-24 Score=126.57 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=80.4
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc-cchhHHHhcCCcccCeEEEeeCCeEE
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD-EVKVVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
.+.+++.. +++++++|.|||+||++|+.+.|.++++++.++++.++.+|.+ .++.++.+|+|.++||+++|++| .+
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 34444443 3899999999999999999999999999999988999999999 78999999999999999999999 77
Q ss_pred EEEeCC-CHHHHHHHH
Q 033073 102 DKLVGA-NPQAIRKMI 116 (128)
Q Consensus 102 ~~~~g~-~~~~l~~~i 116 (128)
.++.|. +.+.|.+||
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 788888 888888875
No 23
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.92 E-value=8.4e-24 Score=124.49 Aligned_cols=95 Identities=15% Similarity=0.251 Sum_probs=86.5
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCC--ChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccC
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAW--CMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
++..+ +.++|++.+. .+.++||.||++| ||+|+.+.|.+++++++++ .+.|+.+|+++++.++.+|+|.++|
T Consensus 11 ~~~~~-~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIP 85 (111)
T cd02965 11 GWPRV-DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTP 85 (111)
T ss_pred CCccc-ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCC
Confidence 45566 8889998885 7999999999997 9999999999999999995 4899999999999999999999999
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHH
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIR 113 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~ 113 (128)
|+++|++|+.+....|. +.+++.
T Consensus 86 Tli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 86 ALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEECCEEEEEEeCccCHHHHh
Confidence 99999999999999998 777764
No 24
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.92 E-value=9.5e-24 Score=123.79 Aligned_cols=97 Identities=23% Similarity=0.462 Sum_probs=85.0
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
.++++ +.++|++.+. +. ++|.||++||++|+.+.|.++++++.+ .++.|+.+|+++++.++.+|+|.++||
T Consensus 2 ~v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPT 74 (101)
T ss_pred ceEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCE
Confidence 57788 7889998664 33 789999999999999999999999877 369999999999999999999999999
Q ss_pred EEEeeCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 92 FILMKEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 92 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
++++++|+. .++.|. +.++|.+||++
T Consensus 75 ~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 999999985 667787 88999998863
No 25
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.92 E-value=1.4e-23 Score=122.16 Aligned_cols=95 Identities=36% Similarity=0.721 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 98 (128)
+.+++++.+..+ .+++++|+||++||++|+.+.+.++++++++ +++.++.+|.++.+.++.+|++.++||+++|++|
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 456788888853 3699999999999999999999999999994 7899999999999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHH
Q 033073 99 ALVDKLVGANPQAIRKMI 116 (128)
Q Consensus 99 ~~~~~~~g~~~~~l~~~i 116 (128)
+.+.+..|.+.++|.++|
T Consensus 79 ~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEEeCCCHHHHHHhh
Confidence 999999999998888776
No 26
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.91 E-value=1.5e-23 Score=123.40 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccCeEEEeeCCe
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.+++++.+..+ .++++||.|+++||++|+.+.|.++++++++++ +.|+.||+|+.++++++|+|...||+++|++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 46778888765 799999999999999999999999999999987 999999999999999999999999999999998
Q ss_pred EEEEEeC---------C--CHHHHHHHHHHHH
Q 033073 100 LVDKLVG---------A--NPQAIRKMINGFI 120 (128)
Q Consensus 100 ~~~~~~g---------~--~~~~l~~~i~~~~ 120 (128)
-+....| . +.+++...|+..-
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 7653333 2 4577777776543
No 27
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.91 E-value=4.5e-23 Score=128.46 Aligned_cols=92 Identities=22% Similarity=0.395 Sum_probs=83.0
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEcccchhHHHhcCCcc-
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVKVVASKMEIKA- 88 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~v~~- 88 (128)
...+.++ +.+++++.+... .+++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++.+|+|.+
T Consensus 27 ~~~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 27 PEHIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 4667777 788899887643 56899999999999999999999999999983 59999999999999999999988
Q ss_pred -----cCeEEEeeCCeEEEEEeC
Q 033073 89 -----MPTFILMKEGALVDKLVG 106 (128)
Q Consensus 89 -----~Pt~~~~~~g~~~~~~~g 106 (128)
+||+++|++|+.+.+..|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.91 E-value=3.5e-23 Score=128.20 Aligned_cols=100 Identities=19% Similarity=0.443 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccc--hhHHHhcCCcccCeEEEe-e
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEV--KVVASKMEIKAMPTFILM-K 96 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~-~ 96 (128)
..++++.+. .++++||+||++||++|+.+.|.+.++++.+ .++.|+.||++.. ..++.+|+|.++||+++| +
T Consensus 10 ~~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 345666665 7999999999999999999999999999998 4688998888865 578999999999999999 5
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHHHHhhhh
Q 033073 97 EGALVDKLVGA-NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 97 ~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 124 (128)
+|+++.++.|. ..++|.++|++++...+
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999 78999999999886544
No 29
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.91 E-value=2.2e-23 Score=124.68 Aligned_cols=93 Identities=30% Similarity=0.528 Sum_probs=83.2
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
.+.+.++ +.++|.+.+...+ .+++++|+||++||++|+.+.|.+++++++++++.|++||++++ .++.+|+|.++||
T Consensus 3 ~g~v~~i-~~~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREI-SSKEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEE-cHHHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 4567888 5589998887421 24899999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEeeCCeEEEEEeCC
Q 033073 92 FILMKEGALVDKLVGA 107 (128)
Q Consensus 92 ~~~~~~g~~~~~~~g~ 107 (128)
+++|++|+.+.+..|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999998875
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.91 E-value=4.8e-23 Score=131.43 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=85.3
Q ss_pred ccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCccc
Q 033073 10 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 10 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
...+.+.+|.+.++|.+.+..+. .+.++||+||++||++|+.+.|.|++|+.+|+.+.|++||++.. .++.+|+|.++
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCC
Confidence 34678899966589999887531 34599999999999999999999999999999999999999987 89999999999
Q ss_pred CeEEEeeCCeEEEEEeCC
Q 033073 90 PTFILMKEGALVDKLVGA 107 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~ 107 (128)
||+++|++|+.+.++.|.
T Consensus 137 PTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 137 PALLVYKGGELIGNFVRV 154 (175)
T ss_pred CEEEEEECCEEEEEEech
Confidence 999999999999988766
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.91 E-value=4.4e-23 Score=120.98 Aligned_cols=96 Identities=26% Similarity=0.571 Sum_probs=85.4
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-C---CeEEEEEEcccchhHHHhcCCcccC
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-Q---DILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~---~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
++.+ +.+++++.+. .+ +++|.||++||++|+.+.|.++++++++ . ++.++.+|++.++.++++|++.++|
T Consensus 2 ~~~l-~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 75 (102)
T cd03005 2 VLEL-TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYP 75 (102)
T ss_pred eeEC-CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCC
Confidence 4567 7788998886 44 5999999999999999999999999988 3 5999999999999999999999999
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHH
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i 116 (128)
|+++|++|+.+..+.|. +.+.|.+||
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999988888888 888887764
No 32
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=133.78 Aligned_cols=110 Identities=20% Similarity=0.375 Sum_probs=97.1
Q ss_pred ccceeecCChhhHHHHHHHHh-cCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCccc
Q 033073 12 KSRVARVNSEKSWDLFITKAT-NQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
.+.++++ +.++|++.+..+. ..+++++|+||++||++|+.+.|.+++++++++ .+.|+.+|++.++.++++|+|.++
T Consensus 29 ~~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC
Confidence 4568888 8889999876431 136899999999999999999999999999994 589999999999999999999999
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
||+++|++|+.+.+..|. +.++|.+|+.+....
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 999999999999888886 999999999887654
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.90 E-value=4.2e-23 Score=122.50 Aligned_cols=98 Identities=21% Similarity=0.397 Sum_probs=85.6
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEccc--chhHHHhcCCcccCe
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDE--VKVVASKMEIKAMPT 91 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~--~~~~~~~~~v~~~Pt 91 (128)
+.++ +.+++++.+.. .+++++|.||++||++|+.+.|.++++++.+ ..+.|+.+|++. ++.++.+|++.++||
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 2 VYEL-TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred eEEc-chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCE
Confidence 5667 78889988874 5788999999999999999999999999998 468999999998 889999999999999
Q ss_pred EEEeeCCe-----EEEEEeCC-CHHHHHHHH
Q 033073 92 FILMKEGA-----LVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 92 ~~~~~~g~-----~~~~~~g~-~~~~l~~~i 116 (128)
+++|++|+ ....+.|. +.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99998775 44566677 888998887
No 34
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.90 E-value=1.3e-22 Score=118.47 Aligned_cols=98 Identities=36% Similarity=0.657 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccCeEEEeeCC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 98 (128)
+.+++.+.+.. .+++++|+||++||++|+.+.+.++++++.++ ++.|+.+|++.++.++++|++.++|++++|++|
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 46678887763 46799999999999999999999999998884 699999999999999999999999999999999
Q ss_pred eEEEEEeCC-CHHHHHHHHHHHH
Q 033073 99 ALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 99 ~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
+.+....|. +.+++..+|++.+
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhhC
Confidence 999888888 8899999998753
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.89 E-value=2.8e-22 Score=117.90 Aligned_cols=97 Identities=23% Similarity=0.459 Sum_probs=85.6
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEccc--chhHHHhcCCccc
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDE--VKVVASKMEIKAM 89 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~--~~~~~~~~~v~~~ 89 (128)
+.++ +.+++.+.+. .+++++|+||++||++|+.+.|.++++++.+ ..+.++.+|++. ++.++.++++.++
T Consensus 2 ~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHL-TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEe-chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 5566 6778888887 6779999999999999999999999999887 348899999998 8999999999999
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHH
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 116 (128)
||+++|++|+.+..+.|. +.+.+.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999988888887 888887764
No 36
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.89 E-value=5.9e-22 Score=118.38 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEE--EEeCC-CHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVD--KLVGA-NPQ 110 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~g~-~~~ 110 (128)
++..++|+||++||++|+.+.|.+++++..++.+.|+.+|.+.++.++.+|+|.++||++++++|.... ++.|. +..
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 677899999999999999999999999988888999999999999999999999999999998865544 67788 889
Q ss_pred HHHHHHHHHHh
Q 033073 111 AIRKMINGFIH 121 (128)
Q Consensus 111 ~l~~~i~~~~~ 121 (128)
++.++|..++.
T Consensus 101 el~~~i~~i~~ 111 (113)
T cd02975 101 EFASLIEDIVR 111 (113)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 37
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.89 E-value=7.3e-22 Score=115.97 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=84.7
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+.++ +..++.+.+.. .+++++|+||++||++|+.+.|.+.++++++ ..+.|+.+|+++++.++++|+|.++|+++
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 2 VVEL-TDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred eEEc-CHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEE
Confidence 4566 78889888774 4667999999999999999999999999998 57999999999999999999999999999
Q ss_pred EeeCC-eEEEEEeCC-CHHHHHHHH
Q 033073 94 LMKEG-ALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 94 ~~~~g-~~~~~~~g~-~~~~l~~~i 116 (128)
+|++| .....+.|. +.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99888 444556566 888888876
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.89 E-value=1.2e-21 Score=114.21 Aligned_cols=91 Identities=20% Similarity=0.403 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEE
Q 033073 24 WDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 24 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
++..+.. .+++++++||++||+.|+.+.+.++++++++ .++.++.+|.++.+.+..++++.++|+++++++|+++.
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 3445554 7899999999999999999999999999998 46999999999999999999999999999999999999
Q ss_pred EEeCC-CHHHHHHHHH
Q 033073 103 KLVGA-NPQAIRKMIN 117 (128)
Q Consensus 103 ~~~g~-~~~~l~~~i~ 117 (128)
++.|. +.+++.++++
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 99998 7888887763
No 39
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.89 E-value=1.2e-21 Score=118.37 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=81.2
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-----------hHHH
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-----------VVAS 82 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-----------~~~~ 82 (128)
.+..+ +.+++.+.+. .++.++|+|+++|||+|+.+.|.|++++++ .++.++.+|++.++ .+..
T Consensus 7 ~~~~i-t~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 7 GLEVT-TVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred cceec-CHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 34556 7888998888 789999999999999999999999999998 56788888888542 4556
Q ss_pred hcC----CcccCeEEEeeCCeEEEEEeCC--CHHHHHHHH
Q 033073 83 KME----IKAMPTFILMKEGALVDKLVGA--NPQAIRKMI 116 (128)
Q Consensus 83 ~~~----v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i 116 (128)
+|+ +.++||+++|++|+.+.+..|. +.++|.+++
T Consensus 81 ~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 81 RFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred HcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 655 5569999999999999999884 688888876
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=6.7e-22 Score=115.77 Aligned_cols=96 Identities=25% Similarity=0.422 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC---CeEEEEEEcccchhHHHhcCCcccCeEEEee
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMPTFILMK 96 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 96 (128)
+.+++++.+. .+++++|.||++||+.|+.+.+.++++++.+. ++.++.+|++.++.++++|++.++|++++|+
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 5677888876 78999999999999999999999999999883 5999999999999999999999999999998
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 97 EGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 97 ~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
+|+....+.|. +.+.|..||+++
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHhc
Confidence 77756677788 889999999875
No 41
>PTZ00062 glutaredoxin; Provisional
Probab=99.88 E-value=7.4e-22 Score=128.06 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=85.0
Q ss_pred CChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCC
Q 033073 19 NSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG 98 (128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 98 (128)
.+.+++.+.+.. ..+.+|++|||+||++|+.+.+.+++|+++|+++.|++||.+ |+|.++|||++|++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECC
Confidence 367788887762 248899999999999999999999999999999999999987 999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhh
Q 033073 99 ALVDKLVGANPQAIRKMINGFIHSV 123 (128)
Q Consensus 99 ~~~~~~~g~~~~~l~~~i~~~~~~~ 123 (128)
+.++++.|.++.+|..++.++....
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999886643
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.88 E-value=4.4e-22 Score=117.30 Aligned_cols=92 Identities=20% Similarity=0.408 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHcC-CeEEEEEEccc----chhHHHhcCCcccCeEE
Q 033073 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTYQ-DILFLSVDVDE----VKVVASKMEIKAMPTFI 93 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~-~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~ 93 (128)
+++.+.+. ++++++|+||++||++|+.+.+.+ .++.+.+. ++.++.+|++. .+.++.+|++.++||++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 45677776 789999999999999999999887 67777774 89999999987 57889999999999999
Q ss_pred Eee--CCeEEEEEeCC-CHHHHHHHHH
Q 033073 94 LMK--EGALVDKLVGA-NPQAIRKMIN 117 (128)
Q Consensus 94 ~~~--~g~~~~~~~g~-~~~~l~~~i~ 117 (128)
+|+ +|+.+.++.|. +.++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHhC
Confidence 997 79999988898 8898888763
No 43
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.88 E-value=2.5e-21 Score=125.03 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=86.6
Q ss_pred ccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCccc
Q 033073 10 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 10 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
...+.+.+| +.++|.+.+..++ ++.++||+||++||++|+.+.+.|++|+.+|+.+.|++||++.. ...|++.++
T Consensus 79 ~~~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 79 SKFGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCCCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCC
Confidence 456788899 7788887776432 34699999999999999999999999999999999999999854 689999999
Q ss_pred CeEEEeeCCeEEEEEeCC--------CHHHHHHHHH
Q 033073 90 PTFILMKEGALVDKLVGA--------NPQAIRKMIN 117 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~--------~~~~l~~~i~ 117 (128)
||+++|++|+.+.++.|. +.+.|+.+|.
T Consensus 154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 999999999999988875 3455655554
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=1.7e-21 Score=114.46 Aligned_cols=98 Identities=26% Similarity=0.423 Sum_probs=83.6
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC---CeEEEEEEcccchhHHHhcCCcccC
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
+|.++ +.+++++.+.. .+++++|+||++||++|+.+.|.++++++.++ .+.|+.+|++.+ .++..+++.++|
T Consensus 1 ~v~~l-~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~P 75 (104)
T cd02995 1 PVKVV-VGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFP 75 (104)
T ss_pred CeEEE-chhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCC
Confidence 45677 78899988874 46899999999999999999999999999873 499999999987 678889999999
Q ss_pred eEEEeeCCe--EEEEEeCC-CHHHHHHHH
Q 033073 91 TFILMKEGA--LVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 91 t~~~~~~g~--~~~~~~g~-~~~~l~~~i 116 (128)
|+++|++|+ ...++.|. +.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998876 45566677 888888775
No 45
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.87 E-value=4.7e-21 Score=113.86 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=82.0
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEccc-chhHHH-hcCCccc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDE-VKVVAS-KMEIKAM 89 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~-~~~~~~-~~~v~~~ 89 (128)
.|.++ +.+++++++...+ .+++++|.||++||++|+.+.|.+.++++.+. ++.++.||++. ...++. .+++.++
T Consensus 2 ~v~~~-~~~~~~~~~~~~~-~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTL-SRAEIEALAKGER-RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceec-cHHHHHHHHhhhh-cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcC
Confidence 46777 8889998775322 68999999999999999999999999999883 59999999997 567776 5999999
Q ss_pred CeEEEeeCC-eEEEEEeCC--CHHHHHHHH
Q 033073 90 PTFILMKEG-ALVDKLVGA--NPQAIRKMI 116 (128)
Q Consensus 90 Pt~~~~~~g-~~~~~~~g~--~~~~l~~~i 116 (128)
||+++|.+| .....+.|. +.+.|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999654 455556663 788887764
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.87 E-value=3.1e-21 Score=113.51 Aligned_cols=98 Identities=26% Similarity=0.477 Sum_probs=83.3
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC---CeEEEEEEccc-chhHHHhcCCcccC
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDE-VKVVASKMEIKAMP 90 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~~~~-~~~~~~~~~v~~~P 90 (128)
+.++ +.+++++.+.. .+++++|.||++||++|+.+.|.+.++++.++ ++.++.+|++. ++.++.+|++.++|
T Consensus 2 ~~~l-~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVEL-TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEc-chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 4566 77888887763 45699999999999999999999999999873 59999999999 89999999999999
Q ss_pred eEEEeeCC-eEEEEEeCC-CHHHHHHHH
Q 033073 91 TFILMKEG-ALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 91 t~~~~~~g-~~~~~~~g~-~~~~l~~~i 116 (128)
++++|.+| +....+.|. +.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 99999766 555666676 888887774
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.86 E-value=5.3e-21 Score=112.72 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=75.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC----CeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-C
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ----DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-N 108 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 108 (128)
++++++|.||++||++|+.+.|.++++++.+. ++.++.+|++..+.++++|+|.++||+++|++|.. ..+.|. +
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~~~ 92 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRGPRT 92 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecCCCC
Confidence 57899999999999999999999999999872 48899999999999999999999999999987754 456676 8
Q ss_pred HHHHHHHHHHH
Q 033073 109 PQAIRKMINGF 119 (128)
Q Consensus 109 ~~~l~~~i~~~ 119 (128)
.++|..++++.
T Consensus 93 ~~~l~~~~~~~ 103 (104)
T cd03000 93 KDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 89999998864
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.86 E-value=5.4e-21 Score=111.25 Aligned_cols=93 Identities=23% Similarity=0.413 Sum_probs=82.7
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEcccchhHHHhcCCcccCeEEEee
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDEVKVVASKMEIKAMPTFILMK 96 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 96 (128)
+..++.+.+. ++++++|+||++||++|+.+.+.++++++.+ .++.|+.+|+++++.++++|+|.++||+++|.
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 6678888888 6679999999999999999999999999888 57999999999999999999999999999998
Q ss_pred CC-eEEEEEeCC-CHHHHHHHH
Q 033073 97 EG-ALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 97 ~g-~~~~~~~g~-~~~~l~~~i 116 (128)
+| +...++.|. +.+++.+|+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCcccccCCCCcCHHHHHhhC
Confidence 76 777777777 788887764
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.86 E-value=1.7e-20 Score=113.98 Aligned_cols=98 Identities=16% Similarity=0.299 Sum_probs=81.2
Q ss_pred hhHHHHHHHHhcCC-CcEEEEEeCCCChhhHHhhHHHH---HHHHHc-CCeEEEEEEcccc-------------hhHHHh
Q 033073 22 KSWDLFITKATNQG-CPVVVHFTAAWCMPSVAMNHFFE---ELASTY-QDILFLSVDVDEV-------------KVVASK 83 (128)
Q Consensus 22 ~~~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~---~l~~~~-~~~~~~~v~~~~~-------------~~~~~~ 83 (128)
+++.+.+. .+ ++++|.||++||++|+.+.+.+. .+.+.+ .++.++.+|++.. ..++.+
T Consensus 4 ~~~~~a~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAA----DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHH----cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 34455555 67 99999999999999999999874 555555 5688999999864 688999
Q ss_pred cCCcccCeEEEee-C-CeEEEEEeCC-CHHHHHHHHHHHHhhh
Q 033073 84 MEIKAMPTFILMK-E-GALVDKLVGA-NPQAIRKMINGFIHSV 123 (128)
Q Consensus 84 ~~v~~~Pt~~~~~-~-g~~~~~~~g~-~~~~l~~~i~~~~~~~ 123 (128)
|++.++||++++. + |+++.+..|. +.+.+.++|+.++...
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 9999999999996 4 6999999998 8899999999887653
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.85 E-value=3.5e-20 Score=106.04 Aligned_cols=90 Identities=37% Similarity=0.710 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEE
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
++.+.+. .+++++|+||++||++|+.+.+.++++....+++.|+.+|++.++.++.+|++.++|+++++.+|+.+.
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 4666666 569999999999999999999999999988788999999999999999999999999999999999999
Q ss_pred EEeCC-CHHHHHHHH
Q 033073 103 KLVGA-NPQAIRKMI 116 (128)
Q Consensus 103 ~~~g~-~~~~l~~~i 116 (128)
.+.|. +.+.|..+|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 88888 678888876
No 51
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.84 E-value=6.3e-20 Score=109.83 Aligned_cols=98 Identities=15% Similarity=0.296 Sum_probs=79.3
Q ss_pred ecCChhhHHHHHHHHhcCCCcEEEEEeC-------CCChhhHHhhHHHHHHHHHcC-CeEEEEEEccc-------chhHH
Q 033073 17 RVNSEKSWDLFITKATNQGCPVVVHFTA-------AWCMPSVAMNHFFEELASTYQ-DILFLSVDVDE-------VKVVA 81 (128)
Q Consensus 17 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~-------~~~~~ 81 (128)
.+.+.+++.+.+... ++++++|.||| +||++|+.+.|.+++++.+++ ++.|+.||+++ +..+.
T Consensus 5 ~~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 355778888888753 57899999999 999999999999999999996 79999999976 45899
Q ss_pred HhcCCc-ccCeEEEeeCCeEEEEEeCCCHHHHHHHH
Q 033073 82 SKMEIK-AMPTFILMKEGALVDKLVGANPQAIRKMI 116 (128)
Q Consensus 82 ~~~~v~-~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 116 (128)
..++|. ++||+++|++|+.+-...-.+.+.+..|+
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999998 99999999877644433222566665554
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.83 E-value=2.8e-20 Score=111.30 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=71.8
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC----CeEEEEEEcc--cchhHHHhcCCc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ----DILFLSVDVD--EVKVVASKMEIK 87 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~v~~~--~~~~~~~~~~v~ 87 (128)
+++++ +.+++++.+.. .+++++|.||++||++|+.+.|.++++++.++ .+.|+.+|++ .++.++.+|++.
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 2 PVIVL-DAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred CeEEC-CHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 56778 88899998885 45799999999999999999999999999762 4889999975 467899999999
Q ss_pred ccCeEEEeeCCe
Q 033073 88 AMPTFILMKEGA 99 (128)
Q Consensus 88 ~~Pt~~~~~~g~ 99 (128)
++||+++|++|.
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999998887
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.82 E-value=2.3e-19 Score=129.33 Aligned_cols=104 Identities=25% Similarity=0.377 Sum_probs=92.3
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccchhHHHhcCCccc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
.+..+ +.+++.+.+. .+++++|.|||+||++|+.+.|.+.++++.+ +++.|+.||++.++.++++|+|.++
T Consensus 2 ~v~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76 (462)
T ss_pred CceEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccc
Confidence 45667 7889999887 7889999999999999999999999988876 3499999999999999999999999
Q ss_pred CeEEEeeCCeE-EEEEeCC-CHHHHHHHHHHHHhh
Q 033073 90 PTFILMKEGAL-VDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 90 Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
||+++|++|+. +..+.|. +.+.|.+|+.+.+..
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 99999999987 6667777 999999999988753
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.82 E-value=2.9e-19 Score=129.54 Aligned_cols=104 Identities=24% Similarity=0.435 Sum_probs=92.9
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccchhHHHhcCCcc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEVKVVASKMEIKA 88 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~~~~~~~~~v~~ 88 (128)
..+..+ +.+++++.+. +++.++|.||++||++|+.+.|.+.+++..+ .++.|+.+|++.+..++.+|+|.+
T Consensus 32 ~~v~~l-~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVL-TDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG 106 (477)
T ss_pred CCcEEc-chhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc
Confidence 567777 8889999887 7889999999999999999999999887665 469999999999999999999999
Q ss_pred cCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 89 MPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 89 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
+||+++|++|+.+ .+.|. +.+.|.+|+++.+.+
T Consensus 107 ~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 107 YPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred ccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 9999999999877 67777 999999999998754
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.82 E-value=4e-19 Score=127.09 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=87.5
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcc-cchhHHH-hcCCc
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVD-EVKVVAS-KMEIK 87 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~-~~~~~~~-~~~v~ 87 (128)
...++++ +.+++++++.... .++++||+||++||++|+.+.|.++++++.+ .++.|+.+|++ .+..++. +|+|.
T Consensus 344 ~~~Vv~L-t~~nfe~ll~~~~-~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 344 SQNVVAL-SRAGIENLLKLEN-RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCcEEC-CHHHHHHHHHhhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 3567777 8889998875332 7899999999999999999999999999998 35999999999 7778886 69999
Q ss_pred ccCeEEEeeCCe--EEEEEeCC-CHHHHHHHHHHH
Q 033073 88 AMPTFILMKEGA--LVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 88 ~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~ 119 (128)
++||+++|++|. .+.+..+. +.+.|..||+++
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999998664 23333334 899999999874
No 56
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.1e-20 Score=130.45 Aligned_cols=109 Identities=22% Similarity=0.335 Sum_probs=96.9
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccchhHHHhcCC
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEVKVVASKMEI 86 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~~~~~~~~~v 86 (128)
....|..+ +.++|.+.|. .+..++|.||||||++|+.+.|.+.+.+... +.+.++.||+..+..++.+|+|
T Consensus 23 ~~~~Vl~L-t~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v 97 (493)
T KOG0190|consen 23 AEEDVLVL-TKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEV 97 (493)
T ss_pred cccceEEE-ecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcC
Confidence 45678888 9999999999 7899999999999999999999998888776 4799999999999999999999
Q ss_pred cccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhhhh
Q 033073 87 KAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 87 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 124 (128)
+++||+.+|++|+....+.|. ..+.+..|+.+...+..
T Consensus 98 ~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred CCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 999999999999975556666 99999999998765543
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.81 E-value=5.2e-19 Score=126.60 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=86.5
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEcccch-hHH-HhcCC
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVK-VVA-SKMEI 86 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~-~~~-~~~~v 86 (128)
.+..|+++ +.++|++.+.... .++++||.||++||++|+.+.|.++++++++. ++.|+.||++.+. .++ .+|+|
T Consensus 349 ~~~~Vv~L-~~~nf~~~v~~~~-~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSL-SRPGIENLLKLEE-RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEEC-CHHHHHHHHhhhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 34567777 8889999885221 78999999999999999999999999999983 4899999999763 444 68999
Q ss_pred cccCeEEEeeCCeE-EEEEe-CC-CHHHHHHHHHHH
Q 033073 87 KAMPTFILMKEGAL-VDKLV-GA-NPQAIRKMINGF 119 (128)
Q Consensus 87 ~~~Pt~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~ 119 (128)
.++||+++|++|.. ...+. |. +.+.|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999988752 22343 44 899999999864
No 58
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.81 E-value=7.5e-19 Score=129.57 Aligned_cols=109 Identities=17% Similarity=0.415 Sum_probs=92.9
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHcCCeEEEEEEcccc----hhHHHhc
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTYQDILFLSVDVDEV----KVVASKM 84 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~~~~~----~~~~~~~ 84 (128)
.....++.+.+++++.+.+++.++++++|+||++||++|+.+.+.. .++.+.++++.++++|++++ .+++++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3467888889999999987766789999999999999999998875 67777777899999999854 5788999
Q ss_pred CCcccCeEEEee-CCeEE--EEEeCC-CHHHHHHHHHHHH
Q 033073 85 EIKAMPTFILMK-EGALV--DKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 85 ~v~~~Pt~~~~~-~g~~~--~~~~g~-~~~~l~~~i~~~~ 120 (128)
++.++||+++|+ +|+++ .+..|. +.+++.+++++..
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999999995 88874 677887 9999999998753
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=6.6e-19 Score=127.70 Aligned_cols=106 Identities=17% Similarity=0.351 Sum_probs=91.7
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC---CeEEEEEEcccchhHHHhcCCccc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
.++..+ +.+++++.+.. .+++++|.||++||++|+.+.|.++++++.++ .+.++.+|++.+...+.+++++++
T Consensus 357 ~~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~ 432 (477)
T PTZ00102 357 GPVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAF 432 (477)
T ss_pred CCeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCccc
Confidence 446667 78889887653 68999999999999999999999999998873 589999999999999999999999
Q ss_pred CeEEEeeCCeEE-EEEeCC-CHHHHHHHHHHHHhh
Q 033073 90 PTFILMKEGALV-DKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 90 Pt~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
||+++|++|+.+ ..+.|. +.+.+.+||+++...
T Consensus 433 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 433 PTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999999876544 467787 999999999998764
No 60
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.78 E-value=5.2e-18 Score=95.67 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=69.5
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
.|..||++||++|+.+.+.+++++.++ ..+.++.||.++++++.++|++.++||+++ +|+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 477899999999999999999999988 469999999999999999999999999987 7763 56687 89999999
Q ss_pred HHHH
Q 033073 116 INGF 119 (128)
Q Consensus 116 i~~~ 119 (128)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8875
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.78 E-value=8.1e-19 Score=105.36 Aligned_cols=99 Identities=15% Similarity=0.312 Sum_probs=73.9
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccch-hHHHhcCCcc--cCeEEEee-C
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVK-VVASKMEIKA--MPTFILMK-E 97 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~-~~~~~~~v~~--~Pt~~~~~-~ 97 (128)
++++.+..+..++++++|.||++||++|+.+.|.+.+..... ....|+.++++.+. .....|++.+ +||++++. +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 567777766668999999999999999999999998876654 34567777777654 4567888876 99999994 9
Q ss_pred CeEEEEEe---CC-CHHHHHHHHHHHHh
Q 033073 98 GALVDKLV---GA-NPQAIRKMINGFIH 121 (128)
Q Consensus 98 g~~~~~~~---g~-~~~~l~~~i~~~~~ 121 (128)
|+++.++. |. +...+.+.|....+
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 99887544 33 55555555555443
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=2.9e-17 Score=108.25 Aligned_cols=88 Identities=22% Similarity=0.310 Sum_probs=75.6
Q ss_pred CCCcEEEEEeC---CCChhhHHhhHHHHHHHHHcCCe--EEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEE-EEeCC
Q 033073 34 QGCPVVVHFTA---AWCMPSVAMNHFFEELASTYQDI--LFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVD-KLVGA 107 (128)
Q Consensus 34 ~~~~~vv~f~~---~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~ 107 (128)
++...++.|++ +||++|+.+.|.++++++.++++ .++.+|.++++.++.+|+|.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45566767887 99999999999999999998654 46666666999999999999999999999999874 88888
Q ss_pred -CHHHHHHHHHHHHh
Q 033073 108 -NPQAIRKMINGFIH 121 (128)
Q Consensus 108 -~~~~l~~~i~~~~~ 121 (128)
+.+++.++|+.++.
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 88999999998864
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=7.1e-18 Score=99.00 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=77.9
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCc--ccCeEEEeeC--CeEEEEEeCC-
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIK--AMPTFILMKE--GALVDKLVGA- 107 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~- 107 (128)
.++++++.|+++||++|..+.+.++++++++ ..+.|+.+|+++++.++..|++. ++|+++++++ |+......+.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 3689999999999999999999999999999 56999999999999999999999 9999999987 7666665666
Q ss_pred CHHHHHHHHHHH
Q 033073 108 NPQAIRKMINGF 119 (128)
Q Consensus 108 ~~~~l~~~i~~~ 119 (128)
+.+.|.+||+++
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 899999999875
No 64
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=1.6e-17 Score=98.72 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=76.1
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeC--CCCh---hhHHhhHHHHHHHHHcCCeEEEEEEcc-----cchhHHHh
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTA--AWCM---PSVAMNHFFEELASTYQDILFLSVDVD-----EVKVVASK 83 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~---~C~~~~~~l~~l~~~~~~~~~~~v~~~-----~~~~~~~~ 83 (128)
.++.+ +.++|++.+. +++.++|.||| |||+ +|+.+.|.+.+-+ ..+.+..||++ ++.+++.+
T Consensus 2 g~v~L-~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa---~~v~lakVd~~d~~~~~~~~L~~~ 73 (116)
T cd03007 2 GCVDL-DTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT---DDLLVAEVGIKDYGEKLNMELGER 73 (116)
T ss_pred CeeEC-ChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc---CceEEEEEecccccchhhHHHHHH
Confidence 35667 8999999998 78999999999 7777 5555555544322 24899999994 56789999
Q ss_pred cCCc--ccCeEEEeeCCe--EEEEEeC--CCHHHHHHHHHHH
Q 033073 84 MEIK--AMPTFILMKEGA--LVDKLVG--ANPQAIRKMINGF 119 (128)
Q Consensus 84 ~~v~--~~Pt~~~~~~g~--~~~~~~g--~~~~~l~~~i~~~ 119 (128)
|+|. ++||+++|++|. ....+.| .+.+.|.+||.+.
T Consensus 74 y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 74 YKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred hCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999 999999999884 3234445 4889999998764
No 65
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.73 E-value=1.6e-16 Score=95.98 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHH-H--HHHHHHc-CCeEEEEEEcccchhHHH--------hcCCcccCeEEEe-eCCeE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHF-F--EELASTY-QDILFLSVDVDEVKVVAS--------KMEIKAMPTFILM-KEGAL 100 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~~~~~~v~~~~~~~~~~--------~~~v~~~Pt~~~~-~~g~~ 100 (128)
.+++++|+|+++||++|+.+.+. + .++.+.. .++.++.+|.++.+++.. .|++.++|+++++ .+|++
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 89999999999999999999874 3 4566654 689999999998877654 3589999999999 68999
Q ss_pred EEEEeCC------CHHHHHHHHHHH
Q 033073 101 VDKLVGA------NPQAIRKMINGF 119 (128)
Q Consensus 101 ~~~~~g~------~~~~l~~~i~~~ 119 (128)
+....+. +...+..++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 94 FFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EeeeeecCCCCcCCCcCHHHHHHHH
Confidence 8766554 223566666554
No 66
>PHA02125 thioredoxin-like protein
Probab=99.72 E-value=1.4e-16 Score=88.58 Aligned_cols=70 Identities=21% Similarity=0.533 Sum_probs=59.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC--CHHHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA--NPQAIRKMI 116 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i 116 (128)
+++||++||++|+.+.|.|+++. +.++.+|.+.+++++.+|+|.++||++ +|+.+.++.|. +..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 78999999999999999997653 468899999999999999999999998 78888888887 446666544
No 67
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.72 E-value=5.7e-17 Score=96.53 Aligned_cols=83 Identities=27% Similarity=0.564 Sum_probs=65.3
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHH---HHHHc-CCeEEEEEEcccc--------------------hhHHHhcCCccc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEE---LASTY-QDILFLSVDVDEV--------------------KVVASKMEIKAM 89 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~---l~~~~-~~~~~~~v~~~~~--------------------~~~~~~~~v~~~ 89 (128)
++++++++||++||++|+.+.+.+.+ +.... .++.++.++++.. ..++..|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 78999999999999999999998875 44444 4688888888753 358889999999
Q ss_pred CeEEEee-CCeEEEEEeCC-CHHHHHHHH
Q 033073 90 PTFILMK-EGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 90 Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i 116 (128)
||++++. +|+++..+.|. ++++|.+++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999994 89999999999 899988765
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=2.2e-16 Score=104.10 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHH
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIR 113 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 113 (128)
+...++.||++||++|+.+.+.+++++...+++.+..+|.+.++.++.+|+|.++||++++.+|+. +.|. ..++|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~ 209 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFL 209 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHH
Confidence 344555599999999999999999999888889999999999999999999999999999988864 6677 788888
Q ss_pred HHHHH
Q 033073 114 KMING 118 (128)
Q Consensus 114 ~~i~~ 118 (128)
++|.+
T Consensus 210 ~~l~~ 214 (215)
T TIGR02187 210 EYILS 214 (215)
T ss_pred HHHHh
Confidence 88865
No 69
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.72 E-value=3.7e-16 Score=105.94 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=74.3
Q ss_pred HhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-----------chhHHHhcCCcccCeEEEeeC-C
Q 033073 31 ATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-----------VKVVASKMEIKAMPTFILMKE-G 98 (128)
Q Consensus 31 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g 98 (128)
+++.++++||+||++||++|+.+.|.++++++++ ++.++.|++|. +..++.+|+|.++|+++++.+ |
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 3347899999999999999999999999999998 57777777764 356889999999999999964 5
Q ss_pred eEEE-EEeCC-CHHHHHHHHHHHHh
Q 033073 99 ALVD-KLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 99 ~~~~-~~~g~-~~~~l~~~i~~~~~ 121 (128)
+.+. ...|. +.++|.+.|.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5544 44587 99999999887765
No 70
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=3e-16 Score=101.23 Aligned_cols=89 Identities=20% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-----------------------hHHHhcCCcccC
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-----------------------VVASKMEIKAMP 90 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-----------------------~~~~~~~v~~~P 90 (128)
++++++|+||++||++|+...|.+.++.+ .++.++.|+.++++ .+...|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~--~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA--QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH--cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 68999999999999999999999999876 37888888875432 234478999999
Q ss_pred eEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHhhhh
Q 033073 91 TFILM-KEGALVDKLVGA-NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 91 t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 124 (128)
+.+++ ++|+++..+.|. +.++++++|+.++....
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 65555 799999999988 89999999998886543
No 71
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.71 E-value=2.9e-16 Score=98.14 Aligned_cols=86 Identities=13% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc------------hhHH-Hhc---CCcccCeEEEe-e
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV------------KVVA-SKM---EIKAMPTFILM-K 96 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~------------~~~~-~~~---~v~~~Pt~~~~-~ 96 (128)
.++..+|+||++||++|+.+.|.++++++++ ++.++.|+.+.. .... ..| ++.++||.+++ +
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5677899999999999999999999999998 566777776642 2232 345 78999998888 4
Q ss_pred CCeE-EEEEeCC-CHHHHHHHHHHHH
Q 033073 97 EGAL-VDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 97 ~g~~-~~~~~g~-~~~~l~~~i~~~~ 120 (128)
+|+. +....|. +.+++++.|++++
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6664 5567788 8889988887753
No 72
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.71 E-value=8.7e-16 Score=93.02 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=92.5
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCC--CChhhHHhhHHHHHHHHHcC--CeEEEEEEcccchhHHHhcCCccc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAA--WCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
.+..+ +..+++..+. .+...+|+|-.+ .++.+....-+|++++++|+ ++.|++||+|+++.++.+|+|.++
T Consensus 18 g~~~~-~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~si 92 (132)
T PRK11509 18 GWTPV-SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRF 92 (132)
T ss_pred CCCcc-ccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccC
Confidence 34445 5577888776 566777777754 68888999999999999995 399999999999999999999999
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhhhhcc
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMINGFIHSVRLH 126 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~ 126 (128)
||+++|++|+.+....|. +.+++.++|++++.+..+.
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~~ 130 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCcc
Confidence 999999999999999999 9999999999998765543
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.71 E-value=2.2e-16 Score=114.57 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEc----------------------------ccchhHHHh
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDV----------------------------DEVKVVASK 83 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~----------------------------~~~~~~~~~ 83 (128)
+++++||+|||+||++|+.+.|.|+++.++++ ++.|+.|.. |.+..+...
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 78999999999999999999999999999883 677776643 334568889
Q ss_pred cCCcccCeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 84 MEIKAMPTFILM-KEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 84 ~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
|+|.++||++++ ++|+++....|. +.++|.++|+..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999998666 799999999998 899999999844
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=1.7e-16 Score=114.45 Aligned_cols=104 Identities=23% Similarity=0.403 Sum_probs=86.5
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-C---CeEEEEEEcccchhHHHhcCCcc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-Q---DILFLSVDVDEVKVVASKMEIKA 88 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~---~~~~~~v~~~~~~~~~~~~~v~~ 88 (128)
..+..+ +..++.+.+.. .+++++|+||++||++|+.+.|.++++++.+ . ++.|+.+|++.+. +.. +++.+
T Consensus 346 ~~v~~l-~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~ 419 (462)
T TIGR01130 346 GPVKVL-VGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEG 419 (462)
T ss_pred CccEEe-eCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccc
Confidence 456666 78889887764 6899999999999999999999999999998 3 5899999999774 444 99999
Q ss_pred cCeEEEeeCCeEE--EEEeCC-CHHHHHHHHHHHHhh
Q 033073 89 MPTFILMKEGALV--DKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 89 ~Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
+||+++|++|... ..+.|. +.+.|.+||++....
T Consensus 420 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 420 FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred cCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 9999999887653 345566 999999999987654
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.69 E-value=5.3e-16 Score=99.09 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=71.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-----------------------chhHHHhcCCcccC
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-----------------------VKVVASKMEIKAMP 90 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-----------------------~~~~~~~~~v~~~P 90 (128)
++++++|+||++||++|+.+.|.++++.++ ++.++.|+.++ ...+...|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 689999999999999999999999988764 57777776532 23456678999999
Q ss_pred eEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 91 TFILM-KEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 91 t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
+.+++ ++|+++..+.|. +.++++++++++++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 65555 799999999998 99999999998874
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.69 E-value=4.3e-16 Score=96.47 Aligned_cols=72 Identities=10% Similarity=0.282 Sum_probs=59.9
Q ss_pred hcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---------CCeEEEEEEcccc-------------------------
Q 033073 32 TNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---------QDILFLSVDVDEV------------------------- 77 (128)
Q Consensus 32 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---------~~~~~~~v~~~~~------------------------- 77 (128)
++++++++|+|||+||++|+.+.|.|.++.+++ .++.++.|+.+..
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 447999999999999999999999999987754 1588998888642
Q ss_pred hhHHHhcCCcccCeEEEe-eCCeEEEE
Q 033073 78 KVVASKMEIKAMPTFILM-KEGALVDK 103 (128)
Q Consensus 78 ~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 103 (128)
..+..+|++.++|+.+++ ++|+++.+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 246678899999998888 58988876
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.68 E-value=6e-16 Score=94.07 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=66.0
Q ss_pred HHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc-----------------------ccchhHHHhcC
Q 033073 29 TKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV-----------------------DEVKVVASKME 85 (128)
Q Consensus 29 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~-----------------------~~~~~~~~~~~ 85 (128)
..+..++++++|+||++||+.|+.+.|.++++.+.+ ++.++.|+. |....++..|+
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 333347899999999999999999999999998876 477777764 33456778899
Q ss_pred CcccCeEEEe-eCCeEEEEEeCC-CHHHH
Q 033073 86 IKAMPTFILM-KEGALVDKLVGA-NPQAI 112 (128)
Q Consensus 86 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l 112 (128)
+.++|+.+++ ++|+++.++.|. +.+.|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999965555 799999999888 65543
No 78
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=107.61 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=79.0
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCCCH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANP 109 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 109 (128)
....++|.||||||.+|+++.|+|.++.-+. ..+++.++|+...+.++.+|+|+++||+.++++|-.+++..|...
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 5789999999999999999999999987665 358999999999999999999999999999999999888777788
Q ss_pred HHHHHHHHHHHh
Q 033073 110 QAIRKMINGFIH 121 (128)
Q Consensus 110 ~~l~~~i~~~~~ 121 (128)
+.+.+|..+..+
T Consensus 122 d~iieFAhR~a~ 133 (468)
T KOG4277|consen 122 DAIIEFAHRCAA 133 (468)
T ss_pred HHHHHHHHhccc
Confidence 999999877644
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.68 E-value=5.9e-16 Score=84.14 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=56.7
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEE
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
-+..|+++||++|+.+.+.+++++..++++.|..+|++++++++.+|++.++||+++ +|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 478899999999999999999998887889999999999999999999999999877 665443
No 80
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.67 E-value=3.8e-15 Score=89.09 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=82.3
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHH-H--HHHHHHc-CCeEEEEEEcc--cchhHHHhcCCcccCeEEEe
Q 033073 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHF-F--EELASTY-QDILFLSVDVD--EVKVVASKMEIKAMPTFILM 95 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~ 95 (128)
.++++++..+..++++++|+|+++||++|+.+... | +++.+.. .+..++.+|.+ +...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 35677777776689999999999999999999864 4 4555544 47888888887 45678899999999999999
Q ss_pred -e-CCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 96 -K-EGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 96 -~-~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
. +|+++.+..|. +++++.+.|++...
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 4 69999999999 99999999988754
No 81
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-16 Score=113.32 Aligned_cols=103 Identities=25% Similarity=0.453 Sum_probs=81.9
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEcccchhHHHhcCCccc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
++|..+ -.+++++++.. .++-++|.||||||++|+++.|++++|++.+ +++.++++|...|.-- ...+.++
T Consensus 366 ~pVkvv-Vgknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~f 439 (493)
T KOG0190|consen 366 SPVKVV-VGKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGF 439 (493)
T ss_pred CCeEEE-eecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--ccccccc
Confidence 456666 67788887764 7899999999999999999999999999999 5799999999887432 2345569
Q ss_pred CeEEEeeCCe--EEEEEeCC-CHHHHHHHHHHHHh
Q 033073 90 PTFILMKEGA--LVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 90 Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
||+.+++.|. ..-.+.|. +.+.|..+|.+...
T Consensus 440 PTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 440 PTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999997664 22233455 88999999988765
No 82
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.5e-15 Score=84.57 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=57.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC--CHHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA--NPQAIRKM 115 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~ 115 (128)
.|.||++||++|+.+.|.+++++++++ .+.|+.+| +.+.+.+|++.++||+++ +|+.+ +.|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 478999999999999999999999984 57777776 344577899999999999 88877 5564 55777766
Q ss_pred H
Q 033073 116 I 116 (128)
Q Consensus 116 i 116 (128)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 83
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.65 E-value=6.9e-16 Score=103.71 Aligned_cols=98 Identities=24% Similarity=0.461 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----C--CeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----Q--DILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+.++++.++. ....++|.|||+||+.++++.|.+++-++.+ | ++.+..||++.+..++.+|.|..+||+-
T Consensus 2 t~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 2 TSENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLK 77 (375)
T ss_pred ccccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceee
Confidence 4566778888 7899999999999999999999998877765 4 5899999999999999999999999999
Q ss_pred EeeCCeEEEEE-eCC-CHHHHHHHHHHHHh
Q 033073 94 LMKEGALVDKL-VGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 94 ~~~~g~~~~~~-~g~-~~~~l~~~i~~~~~ 121 (128)
++++|.+..+- -|. +.+.|.++|++.++
T Consensus 78 vfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred eeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 99999988743 355 88999999988754
No 84
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.65 E-value=1.3e-15 Score=93.23 Aligned_cols=77 Identities=19% Similarity=0.457 Sum_probs=61.3
Q ss_pred HHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC----CeEEEEEEcccch-------------------------
Q 033073 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ----DILFLSVDVDEVK------------------------- 78 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~v~~~~~~------------------------- 78 (128)
+..+++++++++|+||++||++|+...|.++++.+++. ++.++.|+.+..+
T Consensus 10 v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (132)
T cd02964 10 VPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRE 89 (132)
T ss_pred ccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHH
Confidence 33344579999999999999999999999999988772 5778888776532
Q ss_pred hHHHhcCCcccCeEEEe-eCCeEEEEE
Q 033073 79 VVASKMEIKAMPTFILM-KEGALVDKL 104 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~ 104 (128)
.+.+.|++.++|+++++ ++|+++.+.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 34567999999999988 488877653
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.65 E-value=1.8e-15 Score=92.43 Aligned_cols=71 Identities=23% Similarity=0.464 Sum_probs=59.3
Q ss_pred cCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccc------------------------hhHHHhc
Q 033073 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEV------------------------KVVASKM 84 (128)
Q Consensus 33 ~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~------------------------~~~~~~~ 84 (128)
.++++++|+||++||++|+...|.++++.+++ +++.++.++.+.. ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 37899999999999999999999999988876 2577887777643 3567789
Q ss_pred CCcccCeEEEe-eCCeEEEE
Q 033073 85 EIKAMPTFILM-KEGALVDK 103 (128)
Q Consensus 85 ~v~~~Pt~~~~-~~g~~~~~ 103 (128)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 99999999999 48887765
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.64 E-value=7e-15 Score=84.11 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=66.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAI 112 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 112 (128)
.+...+..|+++||++|....+.++++++.++++.+..+|.++.++++.+|+|.++||+++ +|+.+.. |. +.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 5666888899999999999999999999998999999999999999999999999999976 8887764 65 55554
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=2.6e-15 Score=86.89 Aligned_cols=66 Identities=33% Similarity=0.631 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcC---CeEEEEEEcccc-------------------------hhHHHhcCC
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQ---DILFLSVDVDEV-------------------------KVVASKMEI 86 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~v~~~~~-------------------------~~~~~~~~v 86 (128)
+++++|+||++||++|+...|.+.++.+.++ ++.|+.|+.|.. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999997 799999988742 357788999
Q ss_pred cccCeEEEe-eCCeE
Q 033073 87 KAMPTFILM-KEGAL 100 (128)
Q Consensus 87 ~~~Pt~~~~-~~g~~ 100 (128)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999998 46753
No 88
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.64 E-value=1e-14 Score=92.88 Aligned_cols=86 Identities=24% Similarity=0.541 Sum_probs=74.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEccc----------------------chhHHHhcCCccc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDE----------------------VKVVASKMEIKAM 89 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~----------------------~~~~~~~~~v~~~ 89 (128)
.+++++|+||++||++|+...+.+.++.++++ ++.++.++.+. +..+.+.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 68999999999999999999999999999983 58899888753 3567889999999
Q ss_pred CeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 90 PTFILM-KEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 90 Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
|+++++ ++|+++....|. +.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 998877 689999888887 888898888764
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.64 E-value=4e-15 Score=116.18 Aligned_cols=89 Identities=18% Similarity=0.365 Sum_probs=76.4
Q ss_pred cCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEc---c------------------------cchhHHHh
Q 033073 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDV---D------------------------EVKVVASK 83 (128)
Q Consensus 33 ~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~---~------------------------~~~~~~~~ 83 (128)
.+++++||+|||+||++|+...|.|+++.++|+ ++.++.|.. + ....+..+
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 378999999999999999999999999999993 477777742 1 23457788
Q ss_pred cCCcccCeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 84 MEIKAMPTFILM-KEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 84 ~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
|++.++|+++++ ++|+++.++.|. ..+.|.++|++.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999999999 799999999998 88999999998865
No 90
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.60 E-value=4.3e-14 Score=90.08 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=68.4
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-------------hhHHHhcCC--cccCeEEEe-eCCeEE-
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-------------KVVASKMEI--KAMPTFILM-KEGALV- 101 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 101 (128)
+|+||++||++|+++.|.++++++++ ++.++.|+.|.. ..+...|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 78899999999999999999999998 678877777632 235567884 699987777 789885
Q ss_pred EEEeCC-CHHHHHHHHHHHHhh
Q 033073 102 DKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 102 ~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
..+.|. +.+++++.|++++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 567888 999999999988765
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.59 E-value=2.4e-14 Score=86.47 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=63.4
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc---------------------ccchhHHHhcCCcccCeE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV---------------------DEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~---------------------~~~~~~~~~~~v~~~Pt~ 92 (128)
++++++|+||++||++|+.+.|.+.++.+++ .+..+.++. +.+..++++|++.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY-PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC-CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 6799999999999999999999999998874 222222221 234578899999999999
Q ss_pred EEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 93 ILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 93 ~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
+++.++++.....|. +.++|.+.
T Consensus 98 ~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCCCeEEEEeccCCHHHHHhh
Confidence 999654588888888 88888654
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.59 E-value=2.6e-14 Score=84.49 Aligned_cols=73 Identities=32% Similarity=0.578 Sum_probs=65.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc-----------------------hhHHHhcCCcc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV-----------------------KVVASKMEIKA 88 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~-----------------------~~~~~~~~v~~ 88 (128)
.+++++|+||++||+.|+...+.+.++.+++ +++.++.|+.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 5899999999999999999999999999998 6899999999875 67889999999
Q ss_pred cCeEEEe-eCCeEEEEEeC
Q 033073 89 MPTFILM-KEGALVDKLVG 106 (128)
Q Consensus 89 ~Pt~~~~-~~g~~~~~~~g 106 (128)
+|+++++ ++|+++..+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999888 58988887654
No 93
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.58 E-value=1.2e-14 Score=94.77 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=71.5
Q ss_pred HHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc-------c----hhHHHhcCC---------
Q 033073 29 TKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE-------V----KVVASKMEI--------- 86 (128)
Q Consensus 29 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~-------~----~~~~~~~~v--------- 86 (128)
..++++++++||.||++||++|+...|.|+++.+++ .++.++.|++++ . ..+++++++
T Consensus 33 sL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~ 112 (199)
T PTZ00056 33 PMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIE 112 (199)
T ss_pred eHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeee
Confidence 333447899999999999999999999999999998 469999997631 1 223333322
Q ss_pred ---------------------------cccC----eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhhh
Q 033073 87 ---------------------------KAMP----TFILMKEGALVDKLVGA-NPQAIRKMINGFIHSV 123 (128)
Q Consensus 87 ---------------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 123 (128)
..+| |+++-++|+++.++.|. +.+++.+.|++++...
T Consensus 113 v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 113 VNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred ccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1223 45555899999999888 8889999999887653
No 94
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.58 E-value=2.6e-14 Score=86.81 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=62.4
Q ss_pred cCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcc---------------------------cchhHHHh
Q 033073 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVD---------------------------EVKVVASK 83 (128)
Q Consensus 33 ~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~---------------------------~~~~~~~~ 83 (128)
.+++++||+||++||++|+...|.|+++.+++ .++.++.|+.+ ....+...
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 36899999999999999999999999999999 36888887541 12346677
Q ss_pred cCCcccCeEEEe-eCCeEEEEEeCC
Q 033073 84 MEIKAMPTFILM-KEGALVDKLVGA 107 (128)
Q Consensus 84 ~~v~~~Pt~~~~-~~g~~~~~~~g~ 107 (128)
|++.++|+.+++ ++|+++..+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 899999998888 689999888764
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.3e-14 Score=100.98 Aligned_cols=89 Identities=22% Similarity=0.417 Sum_probs=77.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQA 111 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 111 (128)
.+++++|.||++||++|+.+.|.+.++++.+. .+.+..||++.+..++.+|+|.++||+.++..|.....+.+. +.+.
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~ 125 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAES 125 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHH
Confidence 78999999999999999999999999999885 599999999999999999999999999999888433344455 8888
Q ss_pred HHHHHHHHHhh
Q 033073 112 IRKMINGFIHS 122 (128)
Q Consensus 112 l~~~i~~~~~~ 122 (128)
+..++...+..
T Consensus 126 ~~~~~~~~~~~ 136 (383)
T KOG0191|consen 126 LAEFLIKELEP 136 (383)
T ss_pred HHHHHHHhhcc
Confidence 88888776553
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.56 E-value=8.6e-14 Score=86.43 Aligned_cols=75 Identities=32% Similarity=0.608 Sum_probs=64.5
Q ss_pred cCCCcEEEEEeCC-CChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------hhHHHhcCCc-
Q 033073 33 NQGCPVVVHFTAA-WCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------KVVASKMEIK- 87 (128)
Q Consensus 33 ~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------~~~~~~~~v~- 87 (128)
.++++++|.||+. |||+|+...|.++++.+.+ .++.++.|..+.+ ..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3799999999999 9999999999999998886 5688888877532 4678888988
Q ss_pred --------ccCeEEEe-eCCeEEEEEeCC
Q 033073 88 --------AMPTFILM-KEGALVDKLVGA 107 (128)
Q Consensus 88 --------~~Pt~~~~-~~g~~~~~~~g~ 107 (128)
++|+++++ ++|+++....|.
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99987776 799999999888
No 97
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.54 E-value=4.8e-14 Score=85.37 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEe-e
Q 033073 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILM-K 96 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~ 96 (128)
.++++.+..+...+++++|+|+++||++|+.+...+ .++.+.. .++..+.++.+....-....+ .++||++|+ .
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~ 88 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDP 88 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECC
Confidence 367777777777999999999999999999999865 4444433 356666676653211111234 689999999 6
Q ss_pred CCeEEEEEeCC
Q 033073 97 EGALVDKLVGA 107 (128)
Q Consensus 97 ~g~~~~~~~g~ 107 (128)
+|+++.+..|.
T Consensus 89 ~g~vi~~i~Gy 99 (130)
T cd02960 89 SLTVRADITGR 99 (130)
T ss_pred CCCCccccccc
Confidence 78777655544
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.54 E-value=5.4e-14 Score=101.99 Aligned_cols=103 Identities=18% Similarity=0.418 Sum_probs=85.0
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHcCCeEEEEEEcccc----hhHHHhcCCcc
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTYQDILFLSVDVDEV----KVVASKMEIKA 88 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~~~~~----~~~~~~~~v~~ 88 (128)
..+.+.+++++.+.++ ++++++|+|||+||-.|+.+++.. .+.....+++...++|...+ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 6675566899999865 557999999999999999999875 33344448999999999865 46789999999
Q ss_pred cCeEEEee-CCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 89 MPTFILMK-EGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 89 ~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
+|++++|. +|++.....|. +.+.+.+++++..
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 99999995 78777778888 9999999998753
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.53 E-value=1.2e-13 Score=82.30 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEccc--------------------chhHHHhcCCcccCeEE
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDE--------------------VKVVASKMEIKAMPTFI 93 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~--------------------~~~~~~~~~v~~~Pt~~ 93 (128)
+++++|+||++||++|+...|.++++.+++ .++.++.+..++ ...+...|++..+|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 799999999999999999999999998887 467666653211 13456678888999988
Q ss_pred Ee-eCCeEEEE
Q 033073 94 LM-KEGALVDK 103 (128)
Q Consensus 94 ~~-~~g~~~~~ 103 (128)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 87 57877664
No 100
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.52 E-value=9.2e-14 Score=93.76 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=81.7
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccC
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
..+.|.+|.+.+.|-+.+.... ++..|||+||.+.++.|..+...|..|+.+|+.+.|++|.....+ +...|....+|
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~-~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKES-KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSS-TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred cCceEEEccChhhHHHHHhccC-CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCC
Confidence 3567888977788888876432 456899999999999999999999999999999999999998775 78899999999
Q ss_pred eEEEeeCCeEEEEEeCC--------CHHHHHHHHHHH
Q 033073 91 TFILMKEGALVDKLVGA--------NPQAIRKMINGF 119 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 119 (128)
|+++|++|.++..+.+. +...|+.+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999988765 234666666543
No 101
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.51 E-value=4.3e-13 Score=89.14 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=70.5
Q ss_pred HHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc-------c----hhHH-HhcC---------
Q 033073 29 TKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE-------V----KVVA-SKME--------- 85 (128)
Q Consensus 29 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~-------~----~~~~-~~~~--------- 85 (128)
..++++++++||.||++||++|....|.|+++.+++ .++.++.|+++. . ..++ .+++
T Consensus 93 sLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 93 ALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred eHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCcccccc
Confidence 333347899999999999999999999999999999 468999988631 1 1222 2221
Q ss_pred -------------------------CcccCeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 86 -------------------------IKAMPTFILM-KEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 86 -------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
+...|+.+++ ++|+++.++.|. ++++++..|+++++
T Consensus 173 D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 173 DVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1224765555 899999999998 89999999998874
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.51 E-value=3.9e-13 Score=87.03 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=65.3
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc--------------------cchhHHHhcCCcccCeEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD--------------------EVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~--------------------~~~~~~~~~~v~~~Pt~~ 93 (128)
++++++|+||++||++|+...|.+.++.+++ ++.++.++.+ ...++...|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 6899999999999999999999999988765 4444544422 124667789999999876
Q ss_pred Ee-eCCeEEEEEeCCCHHHHHHHHHHHHh
Q 033073 94 LM-KEGALVDKLVGANPQAIRKMINGFIH 121 (128)
Q Consensus 94 ~~-~~g~~~~~~~g~~~~~l~~~i~~~~~ 121 (128)
++ ++|++..+......+.+++++++...
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEADRE 180 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHHHc
Confidence 66 68988876322266788888876643
No 103
>smart00594 UAS UAS domain.
Probab=99.51 E-value=6e-13 Score=80.48 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHc-CCeEEEEEEccc--chhHHHhcCCcccCeEE
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTY-QDILFLSVDVDE--VKVVASKMEIKAMPTFI 93 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 93 (128)
-..++++++..+...+|+++|+|+++||++|+.+...+ .++.+.. .++.++.+|+.. ...++.+|++.++|+++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 34567777776666889999999999999999988753 4444444 468888888764 45789999999999999
Q ss_pred Ee-eCC-----eEEEEEeCC-CHHHHHHHH
Q 033073 94 LM-KEG-----ALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 94 ~~-~~g-----~~~~~~~g~-~~~~l~~~i 116 (128)
++ .+| .++.+..|. ++++|...+
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99 454 356777888 888888765
No 104
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.50 E-value=1.8e-13 Score=77.24 Aligned_cols=73 Identities=26% Similarity=0.553 Sum_probs=56.4
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHH---HHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEEee
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFF---EELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFILMK 96 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 96 (128)
++++.+..+..++++++|+|+++||++|+.+...+ .++.+.. .++.++.+|.++........+ .++|+++++.
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 56677776666899999999999999999999876 4555533 689999999987655432222 6699999975
No 105
>PLN02412 probable glutathione peroxidase
Probab=99.49 E-value=2.7e-13 Score=86.14 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=70.0
Q ss_pred cCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc--------chhH----HHhcC-------------
Q 033073 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE--------VKVV----ASKME------------- 85 (128)
Q Consensus 33 ~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~--------~~~~----~~~~~------------- 85 (128)
++++++||.||++||+.|+...|.++++.++| .++.++.|+.+. ...+ .++++
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 37899999999999999999999999999999 469999987631 1111 12211
Q ss_pred ---------------------CcccCeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 86 ---------------------IKAMPTFILM-KEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 86 ---------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
+...|+.+++ ++|+++.++.|. +.++++..|+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 2334775555 899999999999 899999999998865
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.48 E-value=6.7e-13 Score=85.03 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEE------EEEEcccc------------------------
Q 033073 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILF------LSVDVDEV------------------------ 77 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~------~~v~~~~~------------------------ 77 (128)
...+.+.++..+|.|||.||++|+...|.+.+|... ++.+ +.||.++.
T Consensus 52 ~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v 129 (184)
T TIGR01626 52 WGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQV 129 (184)
T ss_pred ccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceE
Confidence 444555899999999999999999999999999764 4555 66666541
Q ss_pred -----hhHHHhcCCcccCeE--EEeeCCeEEEEEeCC-CHHHHHHHH
Q 033073 78 -----KVVASKMEIKAMPTF--ILMKEGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 78 -----~~~~~~~~v~~~Pt~--~~~~~g~~~~~~~g~-~~~~l~~~i 116 (128)
..+...|++.++|+. ++-++|+++....|. +.+++.+++
T Consensus 130 llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 130 VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 235567899999755 444899999999999 888777743
No 107
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.1e-13 Score=95.98 Aligned_cols=104 Identities=20% Similarity=0.359 Sum_probs=89.2
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
+..+ +.+++...+.. .+..+++.||+|||++|+.+.|.+++++..+ ..+.+..+|++....++.++++.+.||
T Consensus 146 v~~l-~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEc-cccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 6666 67777776654 6889999999999999999999999999977 468999999998899999999999999
Q ss_pred EEEeeCCeE-EEEEeCC-CHHHHHHHHHHHHhh
Q 033073 92 FILMKEGAL-VDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 92 ~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
+++|++|.. .....+. +.+.+.+|++.....
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999988777 5555566 999999999988765
No 108
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.48 E-value=3.5e-13 Score=85.41 Aligned_cols=94 Identities=28% Similarity=0.369 Sum_probs=88.5
Q ss_pred ccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCccc
Q 033073 10 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 10 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
...+.+.+|.+..++-+... +...+|++||-+.-..|+.+...|+.|+..|.+..|++||+...|-+..+++|.-+
T Consensus 63 ~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVL 138 (211)
T KOG1672|consen 63 KGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVL 138 (211)
T ss_pred cCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEe
Confidence 45678899988999998888 78999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCeEEEEEeCC
Q 033073 90 PTFILMKEGALVDKLVGA 107 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~ 107 (128)
|++.+|++|+.++++.|+
T Consensus 139 P~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 139 PTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeEEEEEcCEEEEEEeeH
Confidence 999999999999999877
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.47 E-value=1e-12 Score=82.37 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=68.4
Q ss_pred HHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEc--------ccc---hhHHHh-cCC--------
Q 033073 29 TKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDV--------DEV---KVVASK-MEI-------- 86 (128)
Q Consensus 29 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~--------~~~---~~~~~~-~~v-------- 86 (128)
..++++++++||.||++||++|+...|.+.++.+++ .++.++.+++ +.. ..++++ +++
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~ 95 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKI 95 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceE
Confidence 333447899999999999999999999999999999 4799998885 111 122221 111
Q ss_pred ------------------cccC-----eEEEeeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 87 ------------------KAMP-----TFILMKEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 87 ------------------~~~P-----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
..+| ++++-++|+++..+.|. +.+++...|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 96 KILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred ecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 2478 46666899999999988 888888888765
No 110
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=6.6e-14 Score=100.93 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=83.0
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcc--cchhHHHhc
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVD--EVKVVASKM 84 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~--~~~~~~~~~ 84 (128)
+..+++.+ +.++|..++.. ..+-.+|.||++||++|+.+.|+++++++.. +-+.++.||+- .|..+|+.|
T Consensus 37 ~~D~ii~L-d~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred CCCCeEEe-ehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 34778888 99999999985 3468999999999999999999999999976 45788899995 577999999
Q ss_pred CCcccCeEEEeeCCeE---E-EEEeCC-CHHHHHHHHHHHHh
Q 033073 85 EIKAMPTFILMKEGAL---V-DKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 85 ~v~~~Pt~~~~~~g~~---~-~~~~g~-~~~~l~~~i~~~~~ 121 (128)
+|.++|++.+|..+-. . ..+.|. ...++...+.+.+.
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 9999999999953311 1 122243 45666666665544
No 111
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.46 E-value=8.4e-13 Score=80.38 Aligned_cols=84 Identities=19% Similarity=0.386 Sum_probs=57.8
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhc---CCcccCeEEEee-CCeEEEEEeCCCH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKM---EIKAMPTFILMK-EGALVDKLVGANP 109 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~~~g~~~ 109 (128)
.....++.|..+|||+|....|.+.++++..+++.+-.+..|++++++.+| +..++|+++++. +|+++.++ |..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 567889999999999999999999999999889999999999999888776 678999999994 67877766 6666
Q ss_pred HHHHHHHHH
Q 033073 110 QAIRKMING 118 (128)
Q Consensus 110 ~~l~~~i~~ 118 (128)
..+.+++.+
T Consensus 119 ~~~~~~~~~ 127 (129)
T PF14595_consen 119 KEVQELVDE 127 (129)
T ss_dssp HHHH-----
T ss_pred HHHhhcccc
Confidence 666666654
No 112
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.43 E-value=5.5e-12 Score=80.36 Aligned_cols=91 Identities=20% Similarity=0.370 Sum_probs=73.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC--CeEEEEEEccc-----------------------------chhHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ--DILFLSVDVDE-----------------------------VKVVAS 82 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~-----------------------------~~~~~~ 82 (128)
+++++||+||++||+.|....+.+.++.++++ ++.|+.|+.+. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 68999999999999999999999999999983 79999987753 134566
Q ss_pred hcCCcccCeEEEe-eCCeEEEEEe---------C-CCHHHHHHHHHHHHhhhh
Q 033073 83 KMEIKAMPTFILM-KEGALVDKLV---------G-ANPQAIRKMINGFIHSVR 124 (128)
Q Consensus 83 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g-~~~~~l~~~i~~~~~~~~ 124 (128)
.|++..+|+++++ ++|+++.... + .+..++.+.|+.+++..+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 8899999998888 5888875531 1 156889999999887654
No 113
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3e-13 Score=87.21 Aligned_cols=94 Identities=23% Similarity=0.357 Sum_probs=78.2
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCc-
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIK- 87 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~- 87 (128)
.+..+......+.+++.+... +...++|.||+.|.+.|+.+.|.+.+|+.+| +.++|.+||+...++.+.+|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~ 199 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISL 199 (265)
T ss_pred CchheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeecc
Confidence 344455564555555656543 7789999999999999999999999999999 68999999999999999999884
Q ss_pred -----ccCeEEEeeCCeEEEEEeC
Q 033073 88 -----AMPTFILMKEGALVDKLVG 106 (128)
Q Consensus 88 -----~~Pt~~~~~~g~~~~~~~g 106 (128)
.+||+++|++|+++.+...
T Consensus 200 s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 200 SPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred CcccccCCeEEEEccchhhhcCcc
Confidence 6999999999998876543
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.42 E-value=2.2e-12 Score=80.79 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=61.3
Q ss_pred hcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc-----------chhHHHh-cC------------
Q 033073 32 TNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE-----------VKVVASK-ME------------ 85 (128)
Q Consensus 32 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~-----------~~~~~~~-~~------------ 85 (128)
+++++++||.||++||+ |+...|.++++.+++ .++.++.|+.+. ...++++ ++
T Consensus 19 ~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~ 97 (152)
T cd00340 19 KYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVN 97 (152)
T ss_pred HhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEecc
Confidence 34789999999999999 999999999999999 468998887531 1122222 21
Q ss_pred -----------CcccC-----------e-EEEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 86 -----------IKAMP-----------T-FILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 86 -----------v~~~P-----------t-~~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
+..+| | +++-++|+++.++.|. +.++|++.
T Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 98 GENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 13456 3 4444899999999998 77777654
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.37 E-value=8.3e-12 Score=68.46 Aligned_cols=69 Identities=20% Similarity=0.559 Sum_probs=55.3
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh----HHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV----VASKMEIKAMPTFILMKEGALVDKLVGANPQAIRK 114 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 114 (128)
+..|+++||++|+.+.+.+++ .++.+..+|+++++. +.+.+++.++|++++. |+. ..|.+++.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 568999999999999888765 478899999987654 4566899999999984 654 55778888888
Q ss_pred HHH
Q 033073 115 MIN 117 (128)
Q Consensus 115 ~i~ 117 (128)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 763
No 116
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.3e-11 Score=74.11 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=73.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHH---HHHHHHc-CCeEEEEEEccc----------------chhHHHhcCCcccCeEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFF---EELASTY-QDILFLSVDVDE----------------VKVVASKMEIKAMPTFI 93 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~~~~~~v~~~~----------------~~~~~~~~~v~~~Pt~~ 93 (128)
.++..++.|.++.|++|.++...+ +++.+-+ +.+.+++++... ..++++.|+++++||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 789999999999999999999876 5555555 679999998853 25899999999999999
Q ss_pred Ee-eCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 94 LM-KEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 94 ~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
++ .+|+.+....|. .++++...++-..
T Consensus 121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 121 FFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 99 588999999999 8888877766443
No 117
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.34 E-value=2.2e-11 Score=78.46 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=67.2
Q ss_pred HHhcCCCcE-EEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc--------ch---hH-HHh-----------
Q 033073 30 KATNQGCPV-VVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE--------VK---VV-ASK----------- 83 (128)
Q Consensus 30 ~~~~~~~~~-vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~--------~~---~~-~~~----------- 83 (128)
.++++++++ ++.+|++||++|+...|.++++.+++ .++.++.|+++. .. .+ .++
T Consensus 35 Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~ 114 (183)
T PTZ00256 35 LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKI 114 (183)
T ss_pred HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEE
Confidence 334467765 45669999999999999999999998 469999987531 00 01 111
Q ss_pred -------------------------cCCcccCe----EEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 84 -------------------------MEIKAMPT----FILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 84 -------------------------~~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
+++.++|+ +++-++|+++.++.|. +.+.+.+.|++++.
T Consensus 115 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 115 EVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred ecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446794 6666899999999888 88888888888764
No 118
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.32 E-value=3.3e-11 Score=74.20 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc---------------------chhHHHhcCCccc
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE---------------------VKVVASKMEIKAM 89 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~---------------------~~~~~~~~~v~~~ 89 (128)
++++++|.|| +.||+.|....+.+.++.+.+ .++.++.|..+. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 6899999999 589999999999999998888 478888887753 2456777888887
Q ss_pred ---------CeEEEe-eCCeEEEEEeCC-CHHHHHHH
Q 033073 90 ---------PTFILM-KEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 90 ---------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~ 115 (128)
|+.+++ ++|+++..+.|. ....+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 887777 589999999888 55555544
No 119
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.9e-11 Score=69.58 Aligned_cols=108 Identities=20% Similarity=0.295 Sum_probs=88.7
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+..+.+.++.++++..+ ..+.+||-|..+|.|.|..+...|.++++..++ ..++-+|+++.+.+.+.|++...|+++
T Consensus 5 Lp~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence 45677889999998876 789999999999999999999999999999866 688899999999999999999999999
Q ss_pred EeeCCeEEE---------EEeCC--CHHHHHHHHHHHHhhhh
Q 033073 94 LMKEGALVD---------KLVGA--NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 94 ~~~~g~~~~---------~~~g~--~~~~l~~~i~~~~~~~~ 124 (128)
+|-+++-.. ++.++ +.+++...++-..+.+.
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 986655432 33333 66788888776655443
No 120
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.32 E-value=8.9e-12 Score=77.11 Aligned_cols=70 Identities=23% Similarity=0.505 Sum_probs=58.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc----CCeEEEEEEcccc-------------------------hhHHHhc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY----QDILFLSVDVDEV-------------------------KVVASKM 84 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~~~~~~v~~~~~-------------------------~~~~~~~ 84 (128)
.++.+.++|.|.||++|+.+-|.+.++.+.. ..+.++.|+.|++ ..+..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 7899999999999999999999998877765 3478888877643 4677899
Q ss_pred CCcccCeEEEe-eCCeEEEE
Q 033073 85 EIKAMPTFILM-KEGALVDK 103 (128)
Q Consensus 85 ~v~~~Pt~~~~-~~g~~~~~ 103 (128)
.|.++|+++++ .+|..+..
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred ccCcCceeEEecCCCCEehH
Confidence 99999999988 58877754
No 121
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.31 E-value=2.6e-11 Score=72.47 Aligned_cols=96 Identities=21% Similarity=0.443 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHhcCCCcEEEEEeC-------CCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccc-------hhHHH-
Q 033073 19 NSEKSWDLFITKATNQGCPVVVHFTA-------AWCMPSVAMNHFFEELASTY-QDILFLSVDVDEV-------KVVAS- 82 (128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~-------~~~~~- 82 (128)
.+-+++.+.+......+++++|+|++ +|||+|....|.+++..... .+..|+.+.+.+. ..+..
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 35567778777543467899999995 49999999999998887776 4788888887432 23444
Q ss_pred -hcCCcccCeEEEeeCCeEEEEEeCC---CHHHHHHHHH
Q 033073 83 -KMEIKAMPTFILMKEGALVDKLVGA---NPQAIRKMIN 117 (128)
Q Consensus 83 -~~~v~~~Pt~~~~~~g~~~~~~~g~---~~~~l~~~i~ 117 (128)
++++.++||++-+..++ +..+. +.+.+..+++
T Consensus 83 p~~~l~~IPTLi~~~~~~---rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGE---RLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp -CC---SSSEEEECTSS----EEEHHHHH-HHHHHHHHH
T ss_pred ceeeeeecceEEEECCCC---ccchhhhccHHHHHHHhc
Confidence 59999999999997663 33333 4555555443
No 122
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.27 E-value=1.6e-10 Score=64.23 Aligned_cols=71 Identities=15% Similarity=0.394 Sum_probs=57.5
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeC-C-CHHHHHHHHH
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVG-A-NPQAIRKMIN 117 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 117 (128)
.+++++|+.|..+...++++..++ ++.+-.++..+.+.+ .+|++.++|++++ ||+... .| . +.++|.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~--~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVF--VGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEE--ESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEE--EecCCCHHHHHHHhC
Confidence 347888999999999999999997 588888888666666 9999999999987 887654 47 4 8899998875
No 123
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.27 E-value=2e-10 Score=75.70 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc-----------cchhHHHhcCCcccCeEEEee-CC-eE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD-----------EVKVVASKMEIKAMPTFILMK-EG-AL 100 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g-~~ 100 (128)
.++.-+++||.+.|++|+.+.|+++.+++++ ++.++.|++| .+..++++++|..+|+++++. ++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 6789999999999999999999999999998 8888888887 357889999999999988884 44 34
Q ss_pred EEEEeCC-CHHHHHHH
Q 033073 101 VDKLVGA-NPQAIRKM 115 (128)
Q Consensus 101 ~~~~~g~-~~~~l~~~ 115 (128)
.--..|. +.++|.+-
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 4444577 88887654
No 124
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.26 E-value=5.4e-11 Score=70.04 Aligned_cols=72 Identities=43% Similarity=0.787 Sum_probs=63.8
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEEEcc-cchhHHHhcC--CcccCeEEEeeCCeEEEEEeC
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSVDVD-EVKVVASKME--IKAMPTFILMKEGALVDKLVG 106 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g 106 (128)
++++++.||++||++|+.+.|.+.++.+.+. .+.++.++.. ..+.+...|+ +..+|+++++.+|.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 7899999999999999999999999999986 5999999997 7889999999 999999998888766555544
No 125
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.26 E-value=1.2e-10 Score=72.04 Aligned_cols=84 Identities=8% Similarity=0.114 Sum_probs=64.5
Q ss_pred cCCCcEEEEEeCCC-ChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-----------------------hhHHHhcCCcc
Q 033073 33 NQGCPVVVHFTAAW-CMPSVAMNHFFEELASTYQDILFLSVDVDEV-----------------------KVVASKMEIKA 88 (128)
Q Consensus 33 ~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-----------------------~~~~~~~~v~~ 88 (128)
+.++++||+||+.| |++|+...+.+.++.++++++.++.|+.+.. ..+...|++..
T Consensus 24 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 24 FAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred hCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 36889999999998 6999999999999999988899999988531 34556677653
Q ss_pred ------cCeEEEe-eCCeEEEEEeCC---CHHHHHHHH
Q 033073 89 ------MPTFILM-KEGALVDKLVGA---NPQAIRKMI 116 (128)
Q Consensus 89 ------~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~i 116 (128)
.|+.+++ ++|+++....|. +...+++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5776666 699999888765 344555444
No 126
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.24 E-value=3.7e-10 Score=72.14 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc----------------------------hhHHH
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV----------------------------KVVAS 82 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~----------------------------~~~~~ 82 (128)
+++++||+|| +.||+.|....+.++++.+++ .++.++.|+.+.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 6799999999 899999999999999999998 5788888877532 23445
Q ss_pred hcCCc------ccCeEEEe-eCCeEEEEEeCC-----CHHHHHHHHHHHH
Q 033073 83 KMEIK------AMPTFILM-KEGALVDKLVGA-----NPQAIRKMINGFI 120 (128)
Q Consensus 83 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~ 120 (128)
.|++. ..|+.+++ ++|+++..+.+. +.+++.+.|+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 66665 46776666 689988887543 4567777776653
No 127
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.23 E-value=1.2e-10 Score=72.99 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCcEEEEEeCCCChhhHHhhHH-H--HHHHHHc-CCeEEEEEEcccchhHHHhc--------CCcccCeEE
Q 033073 26 LFITKATNQGCPVVVHFTAAWCMPSVAMNHF-F--EELASTY-QDILFLSVDVDEVKVVASKM--------EIKAMPTFI 93 (128)
Q Consensus 26 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 93 (128)
+.+.+++.++|+++|.++.+||.+|+.|... + .++++.. .++.-+++|.++.|++...| +..++|+.+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence 3344444489999999999999999998864 4 4555554 57788899999999998887 789999999
Q ss_pred Ee-eCCeEEEEEeCCC------HHHHHHHHHHH
Q 033073 94 LM-KEGALVDKLVGAN------PQAIRKMINGF 119 (128)
Q Consensus 94 ~~-~~g~~~~~~~g~~------~~~l~~~i~~~ 119 (128)
|+ .+|+.+....-.- ...+.+.+.++
T Consensus 108 fltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i 140 (163)
T PF03190_consen 108 FLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERI 140 (163)
T ss_dssp EE-TTS-EEEEESS--SS-BTTB--HHHHHHHH
T ss_pred EECCCCCeeeeeeecCCCCCCCCccHHHHHHHH
Confidence 88 6888776433221 23555555544
No 128
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.23 E-value=1.9e-10 Score=69.29 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=58.7
Q ss_pred cCCCcEEEEEeCC-CChhhHHhhHHHHHHHHHc--CCeEEEEEEccc---------------------chhHHHhcCCc-
Q 033073 33 NQGCPVVVHFTAA-WCMPSVAMNHFFEELASTY--QDILFLSVDVDE---------------------VKVVASKMEIK- 87 (128)
Q Consensus 33 ~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~---------------------~~~~~~~~~v~- 87 (128)
..+++++|.||+. ||+.|+...+.++++..++ .++.++.|+.+. ...+.+.|++.
T Consensus 23 l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 23 LKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred HCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 3689999999999 9999999999999999988 489999998864 24677788888
Q ss_pred -----ccCeEEEe-eCCeEEE
Q 033073 88 -----AMPTFILM-KEGALVD 102 (128)
Q Consensus 88 -----~~Pt~~~~-~~g~~~~ 102 (128)
.+|+++++ ++|+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTTSEESEEEEEEETTSBEEE
T ss_pred ccCCceEeEEEEECCCCEEEe
Confidence 89988777 5777664
No 129
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.22 E-value=2.9e-10 Score=72.27 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=61.4
Q ss_pred HHhcCCCcEEEEEeCCC-ChhhHHhhHHHHHHHHHcCCeEEEEEEccc-----------------------chhHHHhcC
Q 033073 30 KATNQGCPVVVHFTAAW-CMPSVAMNHFFEELASTYQDILFLSVDVDE-----------------------VKVVASKME 85 (128)
Q Consensus 30 ~~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-----------------------~~~~~~~~~ 85 (128)
.++++++++||.||+.| |++|....+.++++.+++.++.++.|+.|. ...++..|+
T Consensus 39 l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 39 LADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred hHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 33347889999999999 999999999999999988788888887753 125677888
Q ss_pred CcccC---------eEEEe-eCCeEEEEEeC
Q 033073 86 IKAMP---------TFILM-KEGALVDKLVG 106 (128)
Q Consensus 86 v~~~P---------t~~~~-~~g~~~~~~~g 106 (128)
+...| +.+++ ++|+++..+.+
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred CeecccccCCceeeEEEEECCCCeEEEEEEC
Confidence 87776 65555 69999888753
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.20 E-value=4.5e-10 Score=72.63 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=65.3
Q ss_pred cCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc-------------------------chhHHHhc
Q 033073 33 NQGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE-------------------------VKVVASKM 84 (128)
Q Consensus 33 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~-------------------------~~~~~~~~ 84 (128)
+.++++||+|| +.||+.|....+.+.++.+++ .++.++.|+.+. ...+++.|
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 36889999999 999999999999999998888 578888887653 12456677
Q ss_pred CCc------ccCeEEEe-eCCeEEEEEeCC-----CHHHHHHHHHHH
Q 033073 85 EIK------AMPTFILM-KEGALVDKLVGA-----NPQAIRKMINGF 119 (128)
Q Consensus 85 ~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 119 (128)
++. ..|+.+++ ++|+++...... +.+++.+.|+.+
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 875 35866666 789988776432 567777776543
No 131
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.20 E-value=2.2e-10 Score=63.41 Aligned_cols=70 Identities=14% Similarity=0.368 Sum_probs=50.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHh-----cCCcccCeEEEeeCCeEEEEEeCCCHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASK-----MEIKAMPTFILMKEGALVDKLVGANPQAIR 113 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 113 (128)
+..||++||++|+.+.+.|.++ ++.|-.+|+++.+..... +++.++|++ ++.+|..+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 6789999999999999988765 445667888877666555 389999997 466775433 44666665
Q ss_pred HHHH
Q 033073 114 KMIN 117 (128)
Q Consensus 114 ~~i~ 117 (128)
+.++
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 132
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.18 E-value=4.1e-09 Score=63.27 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=83.1
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccC-eE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMP-TF 92 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~P-t~ 92 (128)
+..+.+..+.++++... ..+.++|.|..+|-+.|.++.+.|.+++++.++ ..++.+|.++.|.+...|.+. -| |+
T Consensus 2 L~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 35677889999998876 899999999999999999999999999998855 789999999999999999999 67 56
Q ss_pred EEeeCCeEEEEEe---------CC--CHHHHHHHHHHHHhhhh
Q 033073 93 ILMKEGALVDKLV---------GA--NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 93 ~~~~~g~~~~~~~---------g~--~~~~l~~~i~~~~~~~~ 124 (128)
+||-+++-+.-.. +. +.+++...++..-+.+.
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~ 121 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGAR 121 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 6665666554322 23 56888888877655443
No 133
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.17 E-value=1.6e-09 Score=67.80 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=61.7
Q ss_pred cCCCcEEEEEeCC-CChhhHHhhHHHHHHHHHc--CCeEEEEEEccc---------------------chhHHHhcCCcc
Q 033073 33 NQGCPVVVHFTAA-WCMPSVAMNHFFEELASTY--QDILFLSVDVDE---------------------VKVVASKMEIKA 88 (128)
Q Consensus 33 ~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~---------------------~~~~~~~~~v~~ 88 (128)
++++++||+||+. ||+.|....+.+.++.+.+ .++.++.|+.+. ...+.+.|++..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 3789999999976 7889999999999998888 578999888753 235667778754
Q ss_pred c------------CeEEEe-eCCeEEEEEeCC-CHHHHHH
Q 033073 89 M------------PTFILM-KEGALVDKLVGA-NPQAIRK 114 (128)
Q Consensus 89 ~------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~ 114 (128)
. |+.+++ ++|+++..+.|. ..+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 3 554555 799999999887 3444333
No 134
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.17 E-value=2.5e-09 Score=64.04 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=75.1
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCC----CChhhHHhh--HHHHHHHHHcCCeEEEEEEcccc--hhHHHhcCCcccCeEEE
Q 033073 23 SWDLFITKATNQGCPVVVHFTAA----WCMPSVAMN--HFFEELASTYQDILFLSVDVDEV--KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~--~~l~~l~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 94 (128)
.+.+++..++...|+++|+++++ ||..|+... |.+.+..+ .++.++..|+... ..++..+++.++|++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 46677776666899999999999 888886554 34444443 4688888888754 56888999999999888
Q ss_pred e--eC--CeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 95 M--KE--GALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 95 ~--~~--g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
+ ++ ..++.+..|. ++++|...++....
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 8 23 3568899999 99999999988764
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.15 E-value=3.6e-10 Score=59.54 Aligned_cols=60 Identities=30% Similarity=0.537 Sum_probs=51.4
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH---hcCCcccCeEEEeeCC
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS---KMEIKAMPTFILMKEG 98 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~---~~~v~~~Pt~~~~~~g 98 (128)
++.||+.||++|+.+.+.+.++....+++.+..++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999983333789999999998876654 7899999999999876
No 136
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.4e-11 Score=77.64 Aligned_cols=103 Identities=24% Similarity=0.497 Sum_probs=89.7
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
.+..+...++| ... +.+.++++||++||..|..+..++..+++..+++.|++++.+..+.+...+.+..+|.++
T Consensus 2 ~v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFV 75 (227)
T ss_pred CceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceee
Confidence 45666666677 333 789999999999999999999999999998889999999999999999999999999999
Q ss_pred EeeCCeEEEEEeCCCHHHHHHHHHHHHhh
Q 033073 94 LMKEGALVDKLVGANPQAIRKMINGFIHS 122 (128)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 122 (128)
++..|+.+.+..+.++..+...++.+...
T Consensus 76 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 104 (227)
T KOG0911|consen 76 FFFLGEKVDRLSGADPPFLVSKVEKLAES 104 (227)
T ss_pred eeecchhhhhhhccCcHHHHHHHHHhhhh
Confidence 99999999999999877777777766543
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.13 E-value=2.7e-09 Score=71.75 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-----------hhHHHhcCCcccCeEEEee-C-CeE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-----------KVVASKMEIKAMPTFILMK-E-GAL 100 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-----------~~~~~~~~v~~~Pt~~~~~-~-g~~ 100 (128)
.++.-+++||...|++|+++.|+++.++++| ++.++.|++|-. ...+.++++..+|+++++. + ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5679999999999999999999999999998 788887777743 4578899999999988884 4 333
Q ss_pred EEEEeCC-CHHHHHHHHHHHHhh
Q 033073 101 VDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 101 ~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
.--..|. +.++|.+-|...+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 3344577 899998887776654
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.13 E-value=1.7e-09 Score=67.25 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred CC-CcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc---------------------c--hhHHHhcCC
Q 033073 34 QG-CPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE---------------------V--KVVASKMEI 86 (128)
Q Consensus 34 ~~-~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~---------------------~--~~~~~~~~v 86 (128)
.+ ++++|.|| ++||+.|....+.++++.+++ .++.++.|+.+. . ..+...|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 55 88888888 899999999999999999988 478888887752 2 456677787
Q ss_pred cc----cC--eEEEe-eCCeEEEEEeCCC-----HHHHHHHH
Q 033073 87 KA----MP--TFILM-KEGALVDKLVGAN-----PQAIRKMI 116 (128)
Q Consensus 87 ~~----~P--t~~~~-~~g~~~~~~~g~~-----~~~l~~~i 116 (128)
.. +| +.+++ ++|+++..+.|.+ ..++.+.|
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 63 33 55555 6899998887763 44554444
No 139
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.11 E-value=9.1e-10 Score=70.86 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=38.0
Q ss_pred HHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcc
Q 033073 30 KATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVD 75 (128)
Q Consensus 30 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~ 75 (128)
.++++++++||.|||+||+.|. ..+.|+++.++| .++.++.+.++
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 3344789999999999999996 478999999999 47999998774
No 140
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.10 E-value=3.9e-09 Score=68.22 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=68.6
Q ss_pred cCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc-------------------------chhHHHhc
Q 033073 33 NQGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE-------------------------VKVVASKM 84 (128)
Q Consensus 33 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~-------------------------~~~~~~~~ 84 (128)
+.++++||+|| +.||+.|....+.+.++.+++ .++.++.|+.|. ...+++.|
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 36889999999 999999999999999999998 578888888763 23567778
Q ss_pred CC----ccc--CeEEEe-eCCeEEEEEeC-----CCHHHHHHHHHHHH
Q 033073 85 EI----KAM--PTFILM-KEGALVDKLVG-----ANPQAIRKMINGFI 120 (128)
Q Consensus 85 ~v----~~~--Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 120 (128)
++ .++ |+.+++ ++|+++..... .+.+++.+.|+.+.
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 87 355 876666 68988776532 37788888887764
No 141
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.09 E-value=2.7e-09 Score=60.47 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch----hHHHhcC--CcccCeEEEeeCCeEEEEEeCCCHHH
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK----VVASKME--IKAMPTFILMKEGALVDKLVGANPQA 111 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 111 (128)
.|+.|+.+||++|.++...|+++..++.++.+..+|++..+ .+....+ +..+|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 57889999999999999999999987778999999998653 4544444 488999875 776543 3455
Q ss_pred HHHHHHHHH
Q 033073 112 IRKMINGFI 120 (128)
Q Consensus 112 l~~~i~~~~ 120 (128)
|.++++..+
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 666666543
No 142
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.08 E-value=2.8e-09 Score=66.09 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCCcEEEEE-eCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc
Q 033073 34 QGCPVVVHF-TAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE 76 (128)
Q Consensus 34 ~~~~~vv~f-~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~ 76 (128)
.+++++|.| ++.||+.|+...+.|.++.+++ .++.++.|+.+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 345555555 5999999999999999999988 579999988764
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.06 E-value=6.2e-09 Score=68.12 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=66.7
Q ss_pred cCCCcEEE-EEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------------hhHHH
Q 033073 33 NQGCPVVV-HFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------------KVVAS 82 (128)
Q Consensus 33 ~~~~~~vv-~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------------~~~~~ 82 (128)
+.++.++| .||+.||+.|....+.+.++.+++ .++.++.|+.+.. ..+++
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 35776665 588999999999999999999888 4788888877631 34556
Q ss_pred hcCCc------ccCeEEEe-eCCeEEEEE----e-CCCHHHHHHHHHHHHh
Q 033073 83 KMEIK------AMPTFILM-KEGALVDKL----V-GANPQAIRKMINGFIH 121 (128)
Q Consensus 83 ~~~v~------~~Pt~~~~-~~g~~~~~~----~-g~~~~~l~~~i~~~~~ 121 (128)
.|++. .+|+.+++ ++|++.... . |.+.+++.+.|+.+..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 67763 57987777 688877554 2 4488999999988764
No 144
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.05 E-value=9.7e-09 Score=68.75 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-----------chhHHHhcCCcccCeEEEee-C-CeE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-----------VKVVASKMEIKAMPTFILMK-E-GAL 100 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-----------~~~~~~~~~v~~~Pt~~~~~-~-g~~ 100 (128)
.++.-+++||...|++|..+.|+++.+++.| ++.++.|++|- +...+.++++..+|+++++. + ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5679999999999999999999999999998 77777666653 23466799999999988884 3 344
Q ss_pred EEEEeCC-CHHHHHHHHHHHHhh
Q 033073 101 VDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 101 ~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
.--..|. +.++|.+-|...+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 4444588 999998887766543
No 145
>PRK15000 peroxidase; Provisional
Probab=99.02 E-value=1e-08 Score=66.95 Aligned_cols=87 Identities=15% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCcEEEEEeC-CCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc----------------------------hhHHH
Q 033073 34 QGCPVVVHFTA-AWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV----------------------------KVVAS 82 (128)
Q Consensus 34 ~~~~~vv~f~~-~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~----------------------------~~~~~ 82 (128)
+++++||+||. .||+.|....+.+.++.+++ .++.++.|+.|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999998 59999999999999999998 5788988888732 23455
Q ss_pred hcCCc------ccCeEEEe-eCCeEEEEEeC-----CCHHHHHHHHHHHH
Q 033073 83 KMEIK------AMPTFILM-KEGALVDKLVG-----ANPQAIRKMINGFI 120 (128)
Q Consensus 83 ~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 120 (128)
.|++. .+|+.+++ ++|++.....+ .+.+++.+.++.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67776 68876666 68998876654 26788888887764
No 146
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=4.6e-09 Score=64.52 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc----------------------hhHHHhcCCcc
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV----------------------KVVASKMEIKA 88 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~----------------------~~~~~~~~v~~ 88 (128)
.+++++|+|| +.||+.|....+.+.++.+++ .++.|+.|..+.. ..+...|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 789999999999999999987 5788998887531 34566777776
Q ss_pred cC---------eEEEe-eCCeEEEEEeCCC
Q 033073 89 MP---------TFILM-KEGALVDKLVGAN 108 (128)
Q Consensus 89 ~P---------t~~~~-~~g~~~~~~~g~~ 108 (128)
.| +++++ ++|+++..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 65 55555 6899999888774
No 147
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.02 E-value=1.4e-10 Score=75.80 Aligned_cols=98 Identities=21% Similarity=0.444 Sum_probs=83.7
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccC
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
..++.+ +.+++...+. .-+++.|+++|||.|....+.|+..+.-- =++.+..||+..++.+..+|-+...|
T Consensus 24 s~~~~~-~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRI-DEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred ceeEEe-cccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 466667 8888888765 56889999999999999999999987754 37999999999999999999999999
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
|++-.++|... ++.|. +...+..|+..
T Consensus 97 tIYHvkDGeFr-rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 97 TIYHVKDGEFR-RYSGARDKNDFISFEEH 124 (248)
T ss_pred eEEEeeccccc-cccCcccchhHHHHHHh
Confidence 99999998754 45566 88899998864
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.01 E-value=1.8e-09 Score=60.78 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=46.2
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-----hHHHhcCCcccCeEEEeeCCeEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-----VVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
|+.|+++|||+|+.+.+.++++.-. +.+.++.++.+.+. .+...+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999997732 34778888876543 2566679999999865 77643
No 149
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.01 E-value=3.2e-08 Score=57.77 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=68.7
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEcccch----hHHHhcCCc-cc
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDEVK----VVASKMEIK-AM 89 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~----~~~~~~~v~-~~ 89 (128)
..|.+.+++++++..+ ..++++|+=.++.||-.......+++.....++ +.++.+|+-+.+ .++++|||. .-
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 4677899999999976 689999999999999999999999999888754 999999998764 568899986 58
Q ss_pred CeEEEeeCCeEEEEEe--CCCHHHH
Q 033073 90 PTFILMKEGALVDKLV--GANPQAI 112 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~--g~~~~~l 112 (128)
|.++++++|+.+.... +.+.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 9999999999987554 2255554
No 150
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=6.7e-09 Score=61.23 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=60.7
Q ss_pred CChhhHHHHHHHHhcCCCcEEEEEeC--------CCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccc-------hhHHH
Q 033073 19 NSEKSWDLFITKATNQGCPVVVHFTA--------AWCMPSVAMNHFFEELASTY-QDILFLSVDVDEV-------KVVAS 82 (128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~vv~f~~--------~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~-------~~~~~ 82 (128)
...++|++++.... +++.++++|++ +|||+|.+..|++.+..+.. .++.|+++++.+- ..+..
T Consensus 10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 35677888777553 45569999986 59999999999998887766 5799999998643 35566
Q ss_pred hcCC-cccCeEEEeeC
Q 033073 83 KMEI-KAMPTFILMKE 97 (128)
Q Consensus 83 ~~~v-~~~Pt~~~~~~ 97 (128)
..++ .++||++-+.+
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 6676 99999999874
No 151
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.96 E-value=1.6e-08 Score=75.25 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCcE-EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHH
Q 033073 34 QGCPV-VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQA 111 (128)
Q Consensus 34 ~~~~~-vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 111 (128)
-++++ +-.|.+++||+|......+++++...+++..-.+|..+.++++++|+|.++|++++ ||+.+.. |. +.++
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~ 549 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEE 549 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHH
Confidence 34555 55668999999999999999999998899999999999999999999999999998 7775543 66 8888
Q ss_pred HHHHH
Q 033073 112 IRKMI 116 (128)
Q Consensus 112 l~~~i 116 (128)
+..+|
T Consensus 550 ~~~~~ 554 (555)
T TIGR03143 550 MLELI 554 (555)
T ss_pred HHHhh
Confidence 88876
No 152
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.95 E-value=1.4e-08 Score=55.32 Aligned_cols=67 Identities=27% Similarity=0.486 Sum_probs=49.8
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhc----CCcccCeEEEeeCCeEEEEEeCCCHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKM----EIKAMPTFILMKEGALVDKLVGANPQAIRK 114 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 114 (128)
++.|+++||++|..+...+.+ .++.+..++++..+.....+ ++..+|++++ +| ....|.+...|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 578899999999998888766 36677788887765544443 6889999986 45 3455778777766
Q ss_pred H
Q 033073 115 M 115 (128)
Q Consensus 115 ~ 115 (128)
+
T Consensus 72 ~ 72 (73)
T cd02976 72 L 72 (73)
T ss_pred h
Confidence 5
No 153
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.94 E-value=1.1e-08 Score=58.08 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=54.6
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch----hHHHhcCC--cccCeEEEeeCCeEEEEEeCCCHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK----VVASKMEI--KAMPTFILMKEGALVDKLVGANPQAI 112 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~----~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~l 112 (128)
|+.|..+|||+|.++...|+++..+++++.+..+|++... .+...++- .++|++++ +|+.+. ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig-----G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG-----GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec-----CHHHH
Confidence 6789999999999999999998877667888888887532 45566664 79999965 665432 33556
Q ss_pred HHHHHHH
Q 033073 113 RKMINGF 119 (128)
Q Consensus 113 ~~~i~~~ 119 (128)
.+++.+.
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 6666553
No 154
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.94 E-value=6.9e-09 Score=63.92 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCCCChh-hHHhhHHHHHHHHHcC-----CeEEEEEEcc
Q 033073 34 QGCPVVVHFTAAWCMP-SVAMNHFFEELASTYQ-----DILFLSVDVD 75 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~~~~~v~~~ 75 (128)
+++++||.||++||++ |....+.++++.+++. ++.++.|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999998 9999999999999882 3888888764
No 155
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.92 E-value=1.7e-08 Score=67.33 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=61.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc--------------------------------------
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD-------------------------------------- 75 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~-------------------------------------- 75 (128)
.++.+++.|.-+.||+|+++.+.+.++.+. ++.++.+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 467889999999999999999999887652 4555443221
Q ss_pred ------cchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 76 ------EVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 76 ------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
++..+++++||.++|+++ +.+|+.+ .|. +++.|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 124678889999999999 6788755 577 889999988764
No 156
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.88 E-value=8.6e-08 Score=63.31 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCCcE-EEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------------hhHHHh
Q 033073 34 QGCPV-VVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------------KVVASK 83 (128)
Q Consensus 34 ~~~~~-vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------------~~~~~~ 83 (128)
.++.+ |+.|+++|||.|....+.+.++..+| .++.++.|++|.. ..++..
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 56654 67888999999999999999999998 5789998888742 245666
Q ss_pred cCCc-------ccCeEEEe-eCCeEEEEEe-----CCCHHHHHHHHHHHH
Q 033073 84 MEIK-------AMPTFILM-KEGALVDKLV-----GANPQAIRKMINGFI 120 (128)
Q Consensus 84 ~~v~-------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~ 120 (128)
|++. .+|+.+++ ++|++..... |.+.+++.+.|+.+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 7762 57877777 6898876653 236788888887763
No 157
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.87 E-value=9.3e-08 Score=64.69 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=66.9
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc----------------------------hhHHH
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV----------------------------KVVAS 82 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~----------------------------~~~~~ 82 (128)
+++++||+|| +.||+.|....+.+.++.+++ .++.++.|+.|.. ..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5678888888 899999999999999999998 5788888877641 34566
Q ss_pred hcCCc-----ccCeEEEe-eCCeEEEEEe-----CCCHHHHHHHHHHHH
Q 033073 83 KMEIK-----AMPTFILM-KEGALVDKLV-----GANPQAIRKMINGFI 120 (128)
Q Consensus 83 ~~~v~-----~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~ 120 (128)
.||+. ..|+.+++ ++|++..... |.+.+++.+.|+.+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 77874 47877777 5898887653 337788888887664
No 158
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-08 Score=66.07 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=88.2
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
...|.++.+..+|.+.+.... +...++|++|.+.-+.|..+...+.-|+.+||.+.|+++-.. +-....+|....+|+
T Consensus 137 ~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCce
Confidence 457899999999999998542 567899999999999999999999999999999999999654 446778899999999
Q ss_pred EEEeeCCeEEEEEeCC--------CHHHHHHHHHHH
Q 033073 92 FILMKEGALVDKLVGA--------NPQAIRKMINGF 119 (128)
Q Consensus 92 ~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 119 (128)
+++|++|..+..++.. ....|.+|++.+
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999988766532 345677777654
No 159
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.86 E-value=1.1e-07 Score=62.39 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=62.9
Q ss_pred Cc-EEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------------hhHHHhcC
Q 033073 36 CP-VVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------------KVVASKME 85 (128)
Q Consensus 36 ~~-~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------------~~~~~~~~ 85 (128)
+. +|+.|+++|||.|....+.+.++.+++ .++.++.|++|.. ..+++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 455788999999999999999999998 5788888887641 34566777
Q ss_pred Cc----ccC----e-EEEeeCCeEEEEEeC-----CCHHHHHHHHHHHHh
Q 033073 86 IK----AMP----T-FILMKEGALVDKLVG-----ANPQAIRKMINGFIH 121 (128)
Q Consensus 86 v~----~~P----t-~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~~ 121 (128)
+. +.| + |++-++|++.....+ .+.+++.+.|+++..
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 65 233 3 444478988876643 367888888887643
No 160
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.85 E-value=9.2e-08 Score=63.17 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=64.8
Q ss_pred CCCcEEE-EEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------------hhHHHh
Q 033073 34 QGCPVVV-HFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------------KVVASK 83 (128)
Q Consensus 34 ~~~~~vv-~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------------~~~~~~ 83 (128)
+++.++| .|+++||+.|....+.+.++..+| .++.++.+++|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5666665 778999999999999999999998 5789999888742 244556
Q ss_pred cCCc-------ccCeEEEe-eCCeEEEEEe-----CCCHHHHHHHHHHHH
Q 033073 84 MEIK-------AMPTFILM-KEGALVDKLV-----GANPQAIRKMINGFI 120 (128)
Q Consensus 84 ~~v~-------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~ 120 (128)
|++. ..|+.+++ ++|++..... |.+.+++.+.|+.+.
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 6653 36765566 6888877543 337888888888764
No 161
>PRK13189 peroxiredoxin; Provisional
Probab=98.85 E-value=1.2e-07 Score=62.97 Aligned_cols=88 Identities=15% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCCcEE-EEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc---------------------------hhHHHh
Q 033073 34 QGCPVV-VHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV---------------------------KVVASK 83 (128)
Q Consensus 34 ~~~~~v-v~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~---------------------------~~~~~~ 83 (128)
.++.++ ++|+++||+.|....+.+.++..+| .++.++.|++|.. ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 466454 5677999999999999999999988 5788888877632 245566
Q ss_pred cCCc-------ccCeEEEe-eCCeEEEEEe-----CCCHHHHHHHHHHHHh
Q 033073 84 MEIK-------AMPTFILM-KEGALVDKLV-----GANPQAIRKMINGFIH 121 (128)
Q Consensus 84 ~~v~-------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~~ 121 (128)
|++. .+|+.+++ ++|++..... |.+.+++.+.|+.+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 164 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQT 164 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 7754 46766666 6898876654 3367888888887643
No 162
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.84 E-value=1e-07 Score=55.86 Aligned_cols=92 Identities=14% Similarity=0.289 Sum_probs=73.5
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCC--CChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccC
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAA--WCMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMP 90 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~P 90 (128)
.+..+ +.++++..+. .+...+++|..+ .++.+....-++.+|.+.|+ .+....+.......+..+|++...|
T Consensus 10 g~~~v-d~~~ld~~l~----~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 10 GWPRV-DADTLDAFLA----APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp TEEEE--CCCHHHHHH----CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred CCeee-chhhHHHHHh----CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence 45666 6888899888 667777777654 46777777778999999995 5778888878888999999999999
Q ss_pred eEEEeeCCeEEEEEeCC-CHH
Q 033073 91 TFILMKEGALVDKLVGA-NPQ 110 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~ 110 (128)
+++++++|+.+....|. +-.
T Consensus 85 aLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEEEEETTEEEEEEESSSTHH
T ss_pred eEEEEECCEEEEEecCeeccc
Confidence 99999999999999888 543
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.83 E-value=7.9e-08 Score=50.77 Aligned_cols=56 Identities=25% Similarity=0.472 Sum_probs=43.9
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhH----HHhcCCcccCeEEEeeCCeEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVV----ASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
|+.|+.+|||+|.+....|++ .++.|-.+|++..+.. .+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 578999999999999998844 4688888888876433 33449999999987 77653
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.82 E-value=6.5e-08 Score=60.09 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 73 (128)
..+++|+.|+.++||+|+.+.+.+.++..+++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 5688999999999999999999999988777666555443
No 165
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.82 E-value=2.4e-07 Score=64.11 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=77.3
Q ss_pred cccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChh--hHH---hhHHHHHHHHHc---CCeEEEEEEcccchhHHH
Q 033073 11 MKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMP--SVA---MNHFFEELASTY---QDILFLSVDVDEVKVVAS 82 (128)
Q Consensus 11 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~~---~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~ 82 (128)
...+++.+ +..+|.+++. +-...+|+|+.+--.. .++ +...+-+|+.+. .++.|+.||......+++
T Consensus 32 GkDRVi~L-neKNfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAK 106 (383)
T PF01216_consen 32 GKDRVIDL-NEKNFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAK 106 (383)
T ss_dssp SS--CEEE--TTTHHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHH
T ss_pred CccceEEc-chhHHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHH
Confidence 34678899 9999999988 6789999999875322 221 223333444443 689999999999999999
Q ss_pred hcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 83 KMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 83 ~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
++|+...+++.+|++|+++.+. |. +++.|..||-.++..
T Consensus 107 KLgv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 107 KLGVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLED 146 (383)
T ss_dssp HHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred hcCccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhccc
Confidence 9999999999999999999977 66 999999999988763
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=1.5e-07 Score=69.61 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHH
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIR 113 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 113 (128)
+..-+..|++++||+|......+++++...+++.+-.+|..+.+++..+|++.++|++++ +|+.+ +.|. +.+++.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 445588999999999999999999999988999999999999999999999999999976 66543 3366 777777
Q ss_pred HHHHH
Q 033073 114 KMING 118 (128)
Q Consensus 114 ~~i~~ 118 (128)
+.+.+
T Consensus 192 ~~~~~ 196 (517)
T PRK15317 192 AKLDT 196 (517)
T ss_pred HHHhc
Confidence 76654
No 167
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.78 E-value=2.7e-07 Score=60.25 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=65.2
Q ss_pred HhcCCCcEEEEEeC-CCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc----------------------------hh
Q 033073 31 ATNQGCPVVVHFTA-AWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV----------------------------KV 79 (128)
Q Consensus 31 ~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~----------------------------~~ 79 (128)
++++++.++|+||. .||+.|....+.+.++.+++ .++.++.|+.+.. ..
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 33468899999994 78999999889999999988 4789988888632 24
Q ss_pred HHHhcCCc------ccCeEEEe-eCCeEEEEEeC-----CCHHHHHHHHHHHH
Q 033073 80 VASKMEIK------AMPTFILM-KEGALVDKLVG-----ANPQAIRKMINGFI 120 (128)
Q Consensus 80 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~~ 120 (128)
+++.|++. ..|+.+++ ++|+++....+ .+.+++.+.|+.+.
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 55667764 35666555 68888776654 25566777776553
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.76 E-value=3.7e-07 Score=51.24 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=56.4
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHH---HhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHH
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVA---SKMEIKAMPTFILMKEGALVDKLVGANPQAIRK 114 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 114 (128)
-+..|..+||++|..+...|.+ .++.|-.+|+++++... ...+...+|++++ ++ ..+.|+++++|.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~ 71 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINR 71 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHH
Confidence 3678889999999999988854 58889999998876543 3347789999976 44 2455889999998
Q ss_pred HHHHHH
Q 033073 115 MINGFI 120 (128)
Q Consensus 115 ~i~~~~ 120 (128)
++....
T Consensus 72 ~~~~~~ 77 (81)
T PRK10329 72 LHPAPH 77 (81)
T ss_pred HHHhhh
Confidence 887654
No 169
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.76 E-value=1.2e-07 Score=52.04 Aligned_cols=68 Identities=16% Similarity=0.398 Sum_probs=51.4
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhc---CCcccCeEEEeeCCeEEEEEeCCCHHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKM---EIKAMPTFILMKEGALVDKLVGANPQAIRKM 115 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 115 (128)
+..|..++||+|++....|++ .++.|-.+|+++++.....+ +..++|.+++ +|. ..+.|.+++.|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 356788999999999999875 47788888988877665544 8889999866 443 24567788887653
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.75 E-value=8.5e-08 Score=62.48 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=54.9
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc---------------------------------------
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV--------------------------------------- 74 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~--------------------------------------- 74 (128)
.++..++.|+.+.||+|+++.+.+.+ ...++.+..+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46799999999999999999999877 123444443322
Q ss_pred ------ccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHH
Q 033073 75 ------DEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 75 ------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 116 (128)
+.+..++.++++.++|+++ +.+|+. ..|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1124677889999999998 777876 3476 677777653
No 171
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.72 E-value=8.3e-07 Score=56.79 Aligned_cols=101 Identities=19% Similarity=0.388 Sum_probs=79.7
Q ss_pred cceeecCChhhHHHHHHHHhcCCCc-EEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCc--c
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCP-VVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIK--A 88 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~--~ 88 (128)
..+.++ +.+++..... .+.+ +++.|..........+...+++++.++ ..+.|+.+|.+..+.++..+++. .
T Consensus 77 P~v~~~-t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 77 PLVPEL-TPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp TSCEEE-STTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred cccccc-chhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence 345566 7788888777 5655 777777777888889999999999998 46999999999999999999998 8
Q ss_pred cCeEEEee--CCeEEEEEeCC-CHHHHHHHHHH
Q 033073 89 MPTFILMK--EGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 89 ~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
+|+++++. .++......+. +.+.|.+|++.
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999996 44433323455 89999999863
No 172
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.72 E-value=2e-07 Score=63.01 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc--------------------------------------
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD-------------------------------------- 75 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~-------------------------------------- 75 (128)
.++.+|+.|.-+.||+|+++.+.+..+.+. .++.+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 456788899999999999999998887664 34665555320
Q ss_pred ------------cchhHHHhcCCcccCeEEEee-CCeEEEEEeCC-CHHHHHHHHH
Q 033073 76 ------------EVKVVASKMEIKAMPTFILMK-EGALVDKLVGA-NPQAIRKMIN 117 (128)
Q Consensus 76 ------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~ 117 (128)
++..+..++|+.++|++++-. +| .+....|. ++++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 012356678999999999975 35 44456688 7888887764
No 173
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.69 E-value=4.8e-07 Score=50.77 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=58.5
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCC----eEEEEEeCCCHHHHH
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEG----ALVDKLVGANPQAIR 113 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g----~~~~~~~g~~~~~l~ 113 (128)
.+++|..+.|+-|..+...+..+.... .+.+-.+|+++++.+..+|+. .+|.+.+-..+ .... ....+.+.|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~-~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEEL-KWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEE-ESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccccccee-CCCCCHHHHH
Confidence 367899999999999999999977764 699999999999999999995 89997763210 2222 2244999999
Q ss_pred HHHH
Q 033073 114 KMIN 117 (128)
Q Consensus 114 ~~i~ 117 (128)
++|+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.65 E-value=6.8e-07 Score=66.12 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAI 112 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 112 (128)
.+..-+..|+++.||+|......+++++...+++..-.+|....+++..+|++.++|++++ +|+.+ +.|. +.+++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 3455688999999999999999999999998999999999999999999999999999987 66543 3366 77777
Q ss_pred HHHHHHH
Q 033073 113 RKMINGF 119 (128)
Q Consensus 113 ~~~i~~~ 119 (128)
.+.+.+.
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 6666544
No 175
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.64 E-value=1.9e-07 Score=52.18 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=43.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-----hHHHhcCCcccCeEEEeeCCeEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-----VVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
|+.|+++|||+|..+...|+++.. ...++.++.++.. .+.+..+..++|++++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 578999999999999999998766 3467777776542 3445568899999744 67543
No 176
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.63 E-value=7.6e-07 Score=49.65 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=45.7
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc---hhHHHhcCCcccCeEEEeeCCeEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV---KVVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
..+.-|+.|+.+||++|.+....|++ .++.|-.+|++.. ..+....+...+|.+++ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-----~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE-----KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH-----cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 45566789999999999999999975 3667777777755 34444568899999875 77643
No 177
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.61 E-value=2.4e-07 Score=59.52 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=81.6
Q ss_pred ccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCccc
Q 033073 10 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAM 89 (128)
Q Consensus 10 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~ 89 (128)
+.-+.|.+| +..++-+.+..++ .+-.|||+.|...-|.|.-+...+++++.+||.++|+++-.... ...|.-...
T Consensus 88 ~kfG~V~~I-Sg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 88 AKFGEVFPI-SGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred hcccceeec-cchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCC
Confidence 345678899 6666666666654 67899999999999999999999999999999999999865532 344777889
Q ss_pred CeEEEeeCCeEEEEEeC------C--CHHHHHHHHHHH
Q 033073 90 PTFILMKEGALVDKLVG------A--NPQAIRKMINGF 119 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g------~--~~~~l~~~i~~~ 119 (128)
||+++|..|.+...+.| . +.+++..++-+.
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99999988876655543 3 567777666543
No 178
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-06 Score=54.75 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=69.6
Q ss_pred HHHHhcCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc---------------------chhHHHh
Q 033073 28 ITKATNQGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE---------------------VKVVASK 83 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~---------------------~~~~~~~ 83 (128)
+.++++.++++||+|| ..++|.|....-.+++...++ .+..++.|+.|. ...+++.
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ 102 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEA 102 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHH
Confidence 4555568899999999 779999999999999999888 478888888863 3567888
Q ss_pred cCCcc------------cC-eEEEeeCCeEEEEEeCC----CHHHHHHHHHHH
Q 033073 84 MEIKA------------MP-TFILMKEGALVDKLVGA----NPQAIRKMINGF 119 (128)
Q Consensus 84 ~~v~~------------~P-t~~~~~~g~~~~~~~g~----~~~~l~~~i~~~ 119 (128)
|++.. .+ ||++-++|++...+... ..+++.+.++++
T Consensus 103 ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 103 YGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred hCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 88743 23 56666889988877544 456777776654
No 179
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.9e-07 Score=61.34 Aligned_cols=108 Identities=20% Similarity=0.407 Sum_probs=84.0
Q ss_pred ccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCC----CChhhHHhhHHHHHHHHHc----C-----CeEEEEEEccc
Q 033073 10 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAA----WCMPSVAMNHFFEELASTY----Q-----DILFLSVDVDE 76 (128)
Q Consensus 10 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~~~l~~l~~~~----~-----~~~~~~v~~~~ 76 (128)
.....|+.+ +.+.+...+... -++..+++.|.|. .|+-|+.+...+.-+++.+ + ++-|..||.++
T Consensus 37 ts~~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 455788899 888899888743 2677888888874 7999999999999998876 1 46789999999
Q ss_pred chhHHHhcCCcccCeEEEee--CCeEE------EEEeCCCHHHHHHHHHHH
Q 033073 77 VKVVASKMEIKAMPTFILMK--EGALV------DKLVGANPQAIRKMINGF 119 (128)
Q Consensus 77 ~~~~~~~~~v~~~Pt~~~~~--~g~~~------~~~~g~~~~~l~~~i~~~ 119 (128)
.+++.+++++.++|++++|. .|+.. ....|..++.+.+|++..
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 99999999999999999993 33322 122244577788887764
No 180
>PHA03050 glutaredoxin; Provisional
Probab=98.58 E-value=1.8e-07 Score=55.36 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=42.9
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-c----hhHHHhcCCcccCeEEEeeCCeEEE
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-V----KVVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
-|+.|..+|||+|.+....|+++.-..+.+..+.++-.. . ..+.+.-|..++|++++ +|+.+.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 477899999999999999998865543334444444311 2 23445567889999966 777554
No 181
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.57 E-value=1.8e-06 Score=54.15 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=61.4
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEccc----------------------------------
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDE---------------------------------- 76 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~---------------------------------- 76 (128)
..+++|+.|+...||+|..+.+.+.++.+++ ..+.|...+...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 5688999999999999999999999988887 468888776610
Q ss_pred ----------------------------------chhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 77 ----------------------------------VKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 77 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
......+++|.++||+++ +|+.+ .+. +.++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 012344668899999999 99874 455 99999999875
No 182
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.57 E-value=9.8e-07 Score=56.25 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLS 71 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~ 71 (128)
.+++.|+.|+...||+|+.+.+.+..+..+++ ++.|..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~ 52 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEK 52 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEE
Confidence 47899999999999999999999999988873 455543
No 183
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.56 E-value=7.9e-07 Score=58.41 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCChhhHHhhHHH---HHHHHHc-CCeEEEEEE
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFF---EELASTY-QDILFLSVD 73 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~~~~~~v~ 73 (128)
+++.|+.|+...||+|..+.+.+ +.+.+.+ +++.+.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56789999999999999999876 7778877 465655443
No 184
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.56 E-value=2e-07 Score=54.27 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=40.1
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh-------HHHhcCCcccCeEEEeeCCeEEE
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV-------VASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
-|+.|..+|||+|.++...|.++ ++.|..+|++..+. +....+..++|.+++ +|+.+.
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 36788999999999999988764 44555666665432 223346789999854 776554
No 185
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.51 E-value=9.9e-07 Score=47.62 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=42.5
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhH----HHhcCCcccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVV----ASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
++.|+++|||+|+.+...|.+.. +.|..+|++.++.. ....+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56888999999999999988754 67778888776543 33356778898754 776554
No 186
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.47 E-value=3.9e-06 Score=45.84 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=46.1
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh---HHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV---VASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKM 115 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 115 (128)
++.|..+|||+|.+....|++ .++.|..+|++.+.. +....+...+|.+++ +|+.+. ..++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-----~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig-----g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-----NGISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG-----GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-----cCCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe-----CHHHHHHH
Confidence 678899999999999888875 366777777776542 333458889999854 676442 34555555
Q ss_pred H
Q 033073 116 I 116 (128)
Q Consensus 116 i 116 (128)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.46 E-value=4.5e-06 Score=62.38 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEee-CC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMK-EG 98 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~-~g 98 (128)
..+++.+.+.. ..+...++.|+.+.|..|..+...+++++..-+.+.+...|..++...+++|++...|++.++. +|
T Consensus 353 ~~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 353 LRQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCC
Confidence 34456666653 2444466678888999999999999999987688999999999999999999999999999994 55
Q ss_pred eEE-EEEeCC-CHHHHHHHHHHHHhhh
Q 033073 99 ALV-DKLVGA-NPQAIRKMINGFIHSV 123 (128)
Q Consensus 99 ~~~-~~~~g~-~~~~l~~~i~~~~~~~ 123 (128)
... -+|.|. .-.++..||..++.-.
T Consensus 431 ~~~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 431 NYTGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred cccceEEEecCccHhHHHHHHHHHHhc
Confidence 432 356677 8899999999886543
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.45 E-value=1.1e-06 Score=48.85 Aligned_cols=57 Identities=14% Similarity=0.308 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH----hcCCcccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS----KMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 102 (128)
|..|+.+|||+|......|++. ++.|-.+|++.++.... ..+..++|++++ +|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEEc
Confidence 4578899999999999999863 56677777777654443 347789999865 776443
No 189
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.44 E-value=5.7e-06 Score=49.15 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHH---c-CCeEEEEEEcccchhHHHhcCCcc--cCeEE
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELAST---Y-QDILFLSVDVDEVKVVASKMEIKA--MPTFI 93 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~---~-~~~~~~~v~~~~~~~~~~~~~v~~--~Pt~~ 93 (128)
+.++...... .+.+..+.|+ .-..-..+.+.+++++++ + .++.|+.+|.+......+.||++. +|.+.
T Consensus 5 t~e~~~~~~~----~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 5 TFENAEELTE----EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccccHHHHhc----CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 6666666666 5667776777 223346778889999999 8 569999999999888999999987 99999
Q ss_pred EeeCCeEEEE--EeCC-CHHHHHHHHHHHHhh
Q 033073 94 LMKEGALVDK--LVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 94 ~~~~g~~~~~--~~g~-~~~~l~~~i~~~~~~ 122 (128)
+........+ ..+. +.+.|.+|++.++..
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 8853321122 3344 889999999998753
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.43 E-value=3e-06 Score=46.44 Aligned_cols=57 Identities=16% Similarity=0.385 Sum_probs=43.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh----HHHhcCCcccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV----VASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
++.|+.+||++|+++...|++ .++.|-.+|++..+. +.+..+...+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 568889999999999999886 467777888887654 444557788999876 776554
No 191
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.43 E-value=3.1e-06 Score=46.46 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=42.1
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH----hcCCc-ccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS----KMEIK-AMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----~~~v~-~~Pt~~~~~~g~~~~ 102 (128)
+..|+.+|||+|..+...|++ .++.|-.+|++.++.... ..+.. ++|++++ +|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-----KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEe
Confidence 568889999999999998876 366777788877654433 35666 8998865 776543
No 192
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.40 E-value=6e-06 Score=47.90 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCcEEEEEe----CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHH----HhcCCcccCeEEEeeCCeEEE
Q 033073 35 GCPVVVHFT----AAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVA----SKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 35 ~~~~vv~f~----~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
..+++|+-. ++|||+|.+....|.+. ++.|..+|+++++... ...+...+|.+.+ +|+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 456666654 38999999999998773 5677788887665443 3456678998865 776543
No 193
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.2e-06 Score=46.12 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=45.6
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-----hHHHhc-CCcccCeEEEeeCCeEEEEEeCCCHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-----VVASKM-EIKAMPTFILMKEGALVDKLVGANPQAI 112 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~l 112 (128)
++.|..++||+|.+....|.+ .++.|..++++... ....+- |.+++|.+++ +|+.+.. +.+.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg--~~d~~~~ 73 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGG--CDDLDAL 73 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeC--cccHHHH
Confidence 677889999999999998884 47777777776554 233333 7899999887 6653321 2255555
Q ss_pred H
Q 033073 113 R 113 (128)
Q Consensus 113 ~ 113 (128)
.
T Consensus 74 ~ 74 (80)
T COG0695 74 E 74 (80)
T ss_pred H
Confidence 4
No 194
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.35 E-value=2.6e-05 Score=47.64 Aligned_cols=104 Identities=11% Similarity=0.224 Sum_probs=74.5
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCC---C-hhh-HHhhHHHHHHHHHc-CC-eEEEEEEcccchhHHHhcCC
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAW---C-MPS-VAMNHFFEELASTY-QD-ILFLSVDVDEVKVVASKMEI 86 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~---C-~~C-~~~~~~l~~l~~~~-~~-~~~~~v~~~~~~~~~~~~~v 86 (128)
.++++.+.+.+++... .++.=+|.| -|. | +.+ ......+++++++| .+ +.|+.+|.++...+.+.||+
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 5677766667676665 444444444 442 2 223 35667889999999 56 89999999999899999998
Q ss_pred c--ccCeEEEeeCCe-EEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 87 K--AMPTFILMKEGA-LVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 87 ~--~~Pt~~~~~~g~-~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
. .+|+++++...+ ....+.|. +.+.+.+|++.++..
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 5 499999995433 22214455 999999999999764
No 195
>PRK10824 glutaredoxin-4; Provisional
Probab=98.29 E-value=4.5e-06 Score=49.81 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=46.5
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeC----CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH----hcCCcccCeEE
Q 033073 22 KSWDLFITKATNQGCPVVVHFTA----AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS----KMEIKAMPTFI 93 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~ 93 (128)
+.+++++. ..+++|+--. ||||+|.+....|.++ ++.|..+|+++++.+.. .-+-..+|.+.
T Consensus 6 ~~v~~~I~-----~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 6 EKIQRQIA-----ENPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHHh-----cCCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 34455554 4566665544 6999999999999885 34555567766654433 33667888877
Q ss_pred EeeCCeEEEEE
Q 033073 94 LMKEGALVDKL 104 (128)
Q Consensus 94 ~~~~g~~~~~~ 104 (128)
+ +|+.+...
T Consensus 76 I--~G~~IGG~ 84 (115)
T PRK10824 76 V--DGELVGGC 84 (115)
T ss_pred E--CCEEEcCh
Confidence 6 88766543
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=98.24 E-value=1.2e-05 Score=45.14 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=42.3
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhH----HHhcCCcccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVV----ASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
+..|..+||++|++....|++ .++.+..+|++.++.. .+..+...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-----~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-----KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-----cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 567788999999999998886 3667777888766533 34457788998855 776554
No 197
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.22 E-value=3.8e-05 Score=44.17 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=66.3
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
..+.+.+++++.+. ...++||-|+..+|+ .....+.+++..+ ..+.|+.+. +..+..++++. .|++++
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVL 70 (97)
T ss_pred eecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEE
Confidence 45667777777666 788999999999887 4567788888887 478887776 45677777765 488888
Q ss_pred eeCC-eEEEEEeCC-CHHHHHHHHHH
Q 033073 95 MKEG-ALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 95 ~~~g-~~~~~~~g~-~~~~l~~~i~~ 118 (128)
|++. .....+.|. +.+.|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHHHHh
Confidence 8643 222334454 77899999864
No 198
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.22 E-value=1.6e-05 Score=45.44 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=41.9
Q ss_pred CCcEEEEEeC----CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHH----HhcCCcccCeEEEeeCCeEE
Q 033073 35 GCPVVVHFTA----AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVA----SKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 35 ~~~~vv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 101 (128)
+.+++|+-.+ +|||+|.+....|++. ++.|-.+|++.++.+. +..+...+|.+++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 4566666443 7999999999988774 4667777776665443 3457788999754 77644
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.05 E-value=0.00011 Score=48.94 Aligned_cols=108 Identities=22% Similarity=0.424 Sum_probs=73.9
Q ss_pred ccccccceeecCChh--hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCC-eEEEEEEccc--------
Q 033073 8 AQLMKSRVARVNSEK--SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQD-ILFLSVDVDE-------- 76 (128)
Q Consensus 8 ~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~-------- 76 (128)
..++.++|+.+.... .+.+... .++|.||.|.+-.||+=+.-...+++++++|++ +.|+.|-+.+
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~----g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAK----GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhcc----CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCcc
Confidence 457788899984433 2333333 789999999999999999999999999999954 5666654421
Q ss_pred ----------chh----------HHHhc----------------CCcccC-eEEEeeCCeEEEEE-eCC---CHHHHHHH
Q 033073 77 ----------VKV----------VASKM----------------EIKAMP-TFILMKEGALVDKL-VGA---NPQAIRKM 115 (128)
Q Consensus 77 ----------~~~----------~~~~~----------------~v~~~P-t~~~~~~g~~~~~~-~g~---~~~~l~~~ 115 (128)
... +.+++ .....| .++++++|+++..- .|+ +++++++|
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREW 232 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHH
Confidence 011 11111 013577 47777999987643 233 78999999
Q ss_pred HHHH
Q 033073 116 INGF 119 (128)
Q Consensus 116 i~~~ 119 (128)
++++
T Consensus 233 L~~~ 236 (237)
T PF00837_consen 233 LEKY 236 (237)
T ss_pred HHhc
Confidence 9875
No 200
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.03 E-value=3.2e-05 Score=43.93 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=42.8
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcc--c------------------------------chhHHHhcC
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVD--E------------------------------VKVVASKME 85 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~--~------------------------------~~~~~~~~~ 85 (128)
+..|+.+.||+|..+.+.++++.... .++.+...... . ......++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999987554 45666655432 1 123456789
Q ss_pred CcccCeEEEee
Q 033073 86 IKAMPTFILMK 96 (128)
Q Consensus 86 v~~~Pt~~~~~ 96 (128)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999843
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.02 E-value=0.0001 Score=43.77 Aligned_cols=74 Identities=9% Similarity=0.108 Sum_probs=55.9
Q ss_pred CChhhHHhhHHHHHHHHHcC--CeEEEEEEcccchhHHHhcCCcc----cCeEEEee-CCeEEEEEeCC-CHHHHHHHHH
Q 033073 46 WCMPSVAMNHFFEELASTYQ--DILFLSVDVDEVKVVASKMEIKA----MPTFILMK-EGALVDKLVGA-NPQAIRKMIN 117 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~v~~----~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~ 117 (128)
.-..-..+...+.++++.++ ++.|+.+|.++.....+.||+.. +|.+.+.. +++........ +.+.|.+|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33445678889999999996 69999999998888999999974 99999985 33211111234 7789999988
Q ss_pred HH
Q 033073 118 GF 119 (128)
Q Consensus 118 ~~ 119 (128)
.+
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 75
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.2e-05 Score=57.05 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHhcCCCcEEEEEeCCCChhhHHhhHH-H--HHHHHHc-CCeEEEEEEcccchhHHHhcC--------CcccCeEEEe
Q 033073 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHF-F--EELASTY-QDILFLSVDVDEVKVVASKME--------IKAMPTFILM 95 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~~~~~~v~~~~~~~~~~~~~--------v~~~Pt~~~~ 95 (128)
+..++..++|++|-+...||.+|..|... + .++++.. .++.-++||.++-|++-..|. -.++|-.+|.
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfL 115 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFL 115 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEE
Confidence 34344489999999999999999998865 3 5666655 678889999999888877764 6799976666
Q ss_pred -eCCeEEE
Q 033073 96 -KEGALVD 102 (128)
Q Consensus 96 -~~g~~~~ 102 (128)
.+|+...
T Consensus 116 TPd~kPFf 123 (667)
T COG1331 116 TPDGKPFF 123 (667)
T ss_pred CCCCceee
Confidence 7888764
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=97.84 E-value=0.00022 Score=46.80 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=41.9
Q ss_pred CCcEEEEEe----CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH----hcCCcccCeEEEeeCCeEEE
Q 033073 35 GCPVVVHFT----AAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS----KMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 35 ~~~~vv~f~----~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 102 (128)
..+++|+-- .|+|++|+++...|++. ++.|..+|+++.++... ..+-..+|.+.+ +|+.+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 455555544 37999999998888863 66777888877655433 335667888776 776554
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.83 E-value=0.0001 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=43.5
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHH---Hh---------cCCcccCeEEEeeCCeEEE
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVA---SK---------MEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~---~~---------~~v~~~Pt~~~~~~g~~~~ 102 (128)
.|+.|..+|||+|.+....|++ .++.|-.+|+++.+... .+ .|..++|++++ +|+.+.
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~-----~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGA-----NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHH-----CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 3778999999999999988877 47888888888665322 22 36789999977 665443
No 205
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.70 E-value=0.00078 Score=43.36 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=27.5
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEE
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTYQDILFL 70 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~ 70 (128)
.|.+|+..-||+|....+.+.++.+.++++.+-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 467888999999999999999999988554443
No 206
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00039 Score=40.76 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=40.0
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccch-hHHHh----cCCcccCeEEEeeCCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVK-VVASK----MEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~-~~~~~----~~v~~~Pt~~~~~~g~~~~ 102 (128)
+|.|..+||++|..+...|.+ + ....++.+|-+.+. ++... -+.+.+|.+++ +|+.+.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 456888999999998888877 3 34566666666443 33322 34568998877 887664
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0021 Score=43.15 Aligned_cols=36 Identities=22% Similarity=0.550 Sum_probs=26.6
Q ss_pred HHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 80 VASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 80 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
+..++++.++||+++ +|+ .+.|. +.+++.+.|....
T Consensus 207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 455678999999998 554 45566 6888888887653
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.33 E-value=0.0055 Score=35.53 Aligned_cols=97 Identities=10% Similarity=0.229 Sum_probs=68.4
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEccc--chhHHHhcCCc----c
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDE--VKVVASKMEIK----A 88 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~--~~~~~~~~~v~----~ 88 (128)
..|.+..+|..++. ...-+++.|..+- ..-......+.+.+... +.-.+..||+.+ ...+|.++.+. -
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 35777889999888 4566666666554 33334445677777776 446778888876 67899999987 4
Q ss_pred cC-eEEEeeCCeEEEEEeCC-CHHHHHHHHH
Q 033073 89 MP-TFILMKEGALVDKLVGA-NPQAIRKMIN 117 (128)
Q Consensus 89 ~P-t~~~~~~g~~~~~~~g~-~~~~l~~~i~ 117 (128)
-| ++..|++|.....+... +...+..|+.
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 44 47778999887766665 7777777764
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.32 E-value=0.0014 Score=42.07 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.9
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQ-DILFLSV 72 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v 72 (128)
+|.-|.|++|-...|.+.++..+++ .+.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 6889999999999999999999994 5665544
No 210
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.31 E-value=0.0099 Score=34.22 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeE
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
.+++...+.. -.+++.+.++.+.-+.|..+...+++++..-+.+.+...+.++ ..|++.+..+|+.
T Consensus 7 ~~qL~~~f~~---l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~ 72 (94)
T cd02974 7 KQQLKAYLER---LENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGED 72 (94)
T ss_pred HHHHHHHHHh---CCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCc
Confidence 3455555543 4555555554433399999999999999987777776544332 4799999877633
Q ss_pred E-EEEeCC-CHHHHHHHHHHH
Q 033073 101 V-DKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 101 ~-~~~~g~-~~~~l~~~i~~~ 119 (128)
. -++.|. .-.++..+|..+
T Consensus 73 ~gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 73 TGIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred ccEEEEecCCchhHHHHHHHh
Confidence 1 355677 889999988764
No 211
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.31 E-value=0.0012 Score=41.50 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=33.2
Q ss_pred CCCcEEEEEe-CCCChhhHHh-hHHHHHHHHHc--CCe-EEEEEEcc
Q 033073 34 QGCPVVVHFT-AAWCMPSVAM-NHFFEELASTY--QDI-LFLSVDVD 75 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~-~~~l~~l~~~~--~~~-~~~~v~~~ 75 (128)
.++++||+|| +.|||.|... .+.+.+..+++ .++ .++.|..|
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 4566666666 7899999998 99998888888 466 58888775
No 212
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.18 E-value=0.012 Score=43.87 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeE
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
.+++...+.. -.+++-|.++.+.|+.|..+...++++++.-+++.+-..+.+ ...|++.+..+|+.
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~ 72 (517)
T PRK15317 7 KTQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGED 72 (517)
T ss_pred HHHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCcc
Confidence 3455555543 667777777777899999999999999998777777553321 34799998876643
Q ss_pred E-EEEeCC-CHHHHHHHHHHHHh
Q 033073 101 V-DKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 101 ~-~~~~g~-~~~~l~~~i~~~~~ 121 (128)
. -++.|. .-.++..||..++.
T Consensus 73 ~~i~f~g~P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 73 TGVRFAGIPMGHEFTSLVLALLQ 95 (517)
T ss_pred ceEEEEecCccHHHHHHHHHHHH
Confidence 3 355677 88999999998865
No 213
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0065 Score=37.93 Aligned_cols=93 Identities=15% Similarity=0.286 Sum_probs=63.7
Q ss_pred HHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc-----------hhHH-HhcCCc------
Q 033073 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV-----------KVVA-SKMEIK------ 87 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~-----------~~~~-~~~~v~------ 87 (128)
+...+++++.++|.=.|+-|+.--+. .-|+.|.++| .++.++...+.+- ..+| ..|+|+
T Consensus 18 ~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~K 96 (162)
T COG0386 18 VSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSK 96 (162)
T ss_pred ccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeE
Confidence 34444589999999999999976533 3466677777 5677777666421 1122 123331
Q ss_pred ------------------------------ccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 88 ------------------------------AMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 88 ------------------------------~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
.+--|++-++|+++.++... .++++...|+++++
T Consensus 97 i~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 97 IDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12236777899999999877 89999999988875
No 214
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.08 E-value=0.018 Score=43.03 Aligned_cols=88 Identities=16% Similarity=0.284 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeE
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
.+++.+.+.. -.+++.|.++.+.|+.|..+...++++++.-+++.+...+.+. ...|++.+..+|+.
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~ 73 (515)
T TIGR03140 7 LAQLKSYLAS---LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGAD 73 (515)
T ss_pred HHHHHHHHHh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcc
Confidence 3455555553 5677767666668999999999999999987788776544332 35699988877653
Q ss_pred E-EEEeCC-CHHHHHHHHHHHHh
Q 033073 101 V-DKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 101 ~-~~~~g~-~~~~l~~~i~~~~~ 121 (128)
. -++.|. .-.++..||..++.
T Consensus 74 ~~i~f~g~P~g~Ef~s~i~~i~~ 96 (515)
T TIGR03140 74 TGIRFAGIPGGHEFTSLVLAILQ 96 (515)
T ss_pred cceEEEecCCcHHHHHHHHHHHH
Confidence 2 355677 88999999998764
No 215
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.05 E-value=0.0077 Score=40.71 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=62.6
Q ss_pred HHHHHhcCCCcEEEEEeCCCChh-hHHhhHHHHHHHHHc---CCe----EEEEEEcccc---------------------
Q 033073 27 FITKATNQGCPVVVHFTAAWCMP-SVAMNHFFEELASTY---QDI----LFLSVDVDEV--------------------- 77 (128)
Q Consensus 27 ~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~l~~~~---~~~----~~~~v~~~~~--------------------- 77 (128)
...+.++.++.++++|.-+.||+ |-.....+....++. +++ .|+.+|-...
T Consensus 131 ~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTG 210 (280)
T KOG2792|consen 131 RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTG 210 (280)
T ss_pred eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccC
Confidence 34445568999999999999987 765555544444432 232 5778877432
Q ss_pred -----hhHHHhcCCccc--C-----------eEEEe---eCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 78 -----KVVASKMEIKAM--P-----------TFILM---KEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 78 -----~~~~~~~~v~~~--P-----------t~~~~---~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
..+++.|+|..- | ++++| .+|+.++.+... +.+++.+-|.++..+
T Consensus 211 T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 456777776322 2 34444 688888877544 889998888877654
No 216
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=97.03 E-value=0.0049 Score=33.62 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=49.5
Q ss_pred EEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccCeEEEe
Q 033073 38 VVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMPTFILM 95 (128)
Q Consensus 38 ~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 95 (128)
.+..|-+...+..+.....++++-+++ ....+-.||+.+.|.+++.+++-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455666777799999999998888887 4689999999999999999999999998754
No 217
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.02 E-value=0.0082 Score=37.47 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred EEEEeCC------CChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHH----HhcCC----cccCeEEEeeCCeEEE
Q 033073 39 VVHFTAA------WCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVA----SKMEI----KAMPTFILMKEGALVD 102 (128)
Q Consensus 39 vv~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~----~~~~v----~~~Pt~~~~~~g~~~~ 102 (128)
|+.|+++ +|++|..+...|+.+ ++.|-.+|++.++.+. +..+. ..+|.+.+ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 4455566 999999999988764 6778888988765443 33343 67888776 776554
No 218
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.019 Score=37.24 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=64.2
Q ss_pred HhcCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc----------------------------chh
Q 033073 31 ATNQGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE----------------------------VKV 79 (128)
Q Consensus 31 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~----------------------------~~~ 79 (128)
+++.++.+|++|| ++..+.|-.....+.+...+| .++.++.+++|. ...
T Consensus 29 ~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~ 108 (194)
T COG0450 29 SDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGE 108 (194)
T ss_pred hhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchh
Confidence 3334577788887 667777777888888888888 588998888863 356
Q ss_pred HHHhcCCcccC-------eEEEeeCCeEEEEEe-----CCCHHHHHHHHHHHH
Q 033073 80 VASKMEIKAMP-------TFILMKEGALVDKLV-----GANPQAIRKMINGFI 120 (128)
Q Consensus 80 ~~~~~~v~~~P-------t~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~ 120 (128)
+++.|++-.-. +|++-++|.+..... |.+.+++.+.|+.+.
T Consensus 109 vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 109 IARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 78888875422 466667887665333 558899999998774
No 219
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.94 E-value=0.029 Score=32.77 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+.++.+.+++++.+. ..+.+||-|+..--. .....+.++++.+ .+..|+.... ..+...+++ .|+++
T Consensus 2 ~~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~iv 69 (104)
T cd03069 2 SVELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVV 69 (104)
T ss_pred ccccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceE
Confidence 356667788888777 677888888766444 3456677777777 5788866543 366788888 67788
Q ss_pred EeeC--------CeEEEEEeCC-CHHHHHHHHHHH
Q 033073 94 LMKE--------GALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 94 ~~~~--------g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
+|+. ...+ .+.|. +.+.|.+||...
T Consensus 70 l~~p~~~~~k~de~~~-~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 70 LFRPPRLSNKFEDSSV-KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEechhhhcccCcccc-cccCcCCHHHHHHHHHhh
Confidence 8832 1111 24454 788999998753
No 220
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.85 E-value=0.02 Score=36.40 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHcC-CeEEEEEEcccchhHHHhcCCcccCeEEEeeC--CeEEEEEeC--CCHHHHHHHHHHHH
Q 033073 53 MNHFFEELASTYQ-DILFLSVDVDEVKVVASKMEIKAMPTFILMKE--GALVDKLVG--ANPQAIRKMINGFI 120 (128)
Q Consensus 53 ~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~g--~~~~~l~~~i~~~~ 120 (128)
....+.++++.+. .+.|+.+. ++.++..+++.. |++++|++ ++.+. +.| .+.++|.+||....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~-y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVV-YDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEE-ESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCcee-cccccCCHHHHHHHHHHhc
Confidence 4567788888884 79999887 567889999999 99999976 33343 445 48999999998764
No 221
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.72 E-value=0.045 Score=31.79 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=60.6
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+..|.+.++++..+.. ....++|-|+..--+ .....+.++++.+ .++.|+... +..+...+++. .|.++
T Consensus 2 v~~i~~~~~~e~~~~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~ 71 (102)
T cd03066 2 VEIINSERELQAFENI---EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVD 71 (102)
T ss_pred ceEcCCHHHHHHHhcc---cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEE
Confidence 4667777788887751 245666666655333 3445677777777 578886554 33566777765 68888
Q ss_pred EeeC-CeEEEEE-eCC-CHHHHHHHHHHH
Q 033073 94 LMKE-GALVDKL-VGA-NPQAIRKMINGF 119 (128)
Q Consensus 94 ~~~~-g~~~~~~-~g~-~~~~l~~~i~~~ 119 (128)
++++ ......+ .|. +.+.|..||...
T Consensus 72 l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 72 FYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 8854 2222224 455 889999998753
No 222
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.66 E-value=0.036 Score=36.56 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=61.9
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChh-hHHhhHHHHHHHHHc-----CCeEEEEEEcc--cc-----------------
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMP-SVAMNHFFEELASTY-----QDILFLSVDVD--EV----------------- 77 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~l~~~~-----~~~~~~~v~~~--~~----------------- 77 (128)
+..+.+.+..+++++++|+|.=+.||. |-.....+..+.++. .++.++.|.+| +.
T Consensus 55 ~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~ 134 (207)
T COG1999 55 QDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRW 134 (207)
T ss_pred CCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCe
Confidence 334444444558999999999888876 877777766665554 34555554443 21
Q ss_pred ----------hhHHHhcCCcc--c-------------CeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 78 ----------KVVASKMEIKA--M-------------PTFILM-KEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 78 ----------~~~~~~~~v~~--~-------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
..+++.|++.. + ..++++ .+|+....+.+. .++++.+.+++++.
T Consensus 135 ~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 135 IGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 23444555442 1 123333 588888877666 78888888888764
No 223
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.57 E-value=0.0055 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc
Q 033073 36 CPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV 74 (128)
Q Consensus 36 ~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~ 74 (128)
+.++|.|..|-|+-|+.....+++|..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence 56899999999999999999999998887 4444444
No 224
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.54 E-value=0.082 Score=32.56 Aligned_cols=96 Identities=8% Similarity=0.130 Sum_probs=64.6
Q ss_pred hHHHHHHHH----hcCCCcEEEEEeCCCChhhHHhhH------HHHHHHHHcCCeEEEEEEcccch--------------
Q 033073 23 SWDLFITKA----TNQGCPVVVHFTAAWCMPSVAMNH------FFEELASTYQDILFLSVDVDEVK-------------- 78 (128)
Q Consensus 23 ~~~~~~~~~----~~~~~~~vv~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~v~~~~~~-------------- 78 (128)
.+.+++..+ +...|+.+|+...+..+.+..+-. .+.+..+ .++.+..-|+....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 345555554 557899999999987754433332 2233333 47888888876532
Q ss_pred ----hHHHhcCCcccCeEEEee--CC--eEEEEEeCC-CHHHHHHHHHHHH
Q 033073 79 ----VVASKMEIKAMPTFILMK--EG--ALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 79 ----~~~~~~~v~~~Pt~~~~~--~g--~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
.....++...+|.+.++- .+ .++.+..|. +++++...+...+
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 245567899999877772 22 677888899 9999988887654
No 225
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.48 E-value=0.039 Score=31.25 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC
Q 033073 36 CPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA 107 (128)
Q Consensus 36 ~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 107 (128)
..++=.|.+...+.++.....+.++-+.+ ....+-.||+.+.|.+++.+++-.+||++-...+ ...+..|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecc
Confidence 44555677888899999999998888876 3478889999999999999999999998765433 23344444
No 226
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.47 E-value=0.084 Score=31.83 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=65.9
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHH-HHc---CCeEEEEEEcc-----cchhHHHhc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELA-STY---QDILFLSVDVD-----EVKVVASKM 84 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~-~~~---~~~~~~~v~~~-----~~~~~~~~~ 84 (128)
..+++ +.-+|++.+. +-+.++|-|=... |+- .-...+.+++ +.. +++.+..|.+. +|.+++++|
T Consensus 5 G~v~L-D~~tFdKvi~----kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery 77 (126)
T PF07912_consen 5 GCVPL-DELTFDKVIP----KFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERY 77 (126)
T ss_dssp TSEEE-STTHHHHHGG----GSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHT
T ss_pred ceeec-cceehhheec----cCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHh
Confidence 34566 7778999998 7899999997543 111 1224455566 332 68999999886 467999999
Q ss_pred CC--cccCeEEEeeCC-eEEEEE--eCC-CHHHHHHHHHHH
Q 033073 85 EI--KAMPTFILMKEG-ALVDKL--VGA-NPQAIRKMINGF 119 (128)
Q Consensus 85 ~v--~~~Pt~~~~~~g-~~~~~~--~g~-~~~~l~~~i~~~ 119 (128)
++ ..+|.+++|..| ...-.+ .+. +.+.|++|+...
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 99 668999999633 322233 454 899999999875
No 227
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.43 E-value=0.033 Score=32.49 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC--CH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA--NP 109 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~ 109 (128)
++..++=.|.+...+..+.....+.++-+.+ ....+-.||+.+.|.+++.+++-.+||++-...+ ...++.|- +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-CcceeecccccH
Confidence 4566677777888999999999998888876 3488889999999999999999999998765432 33445444 44
Q ss_pred HHHH
Q 033073 110 QAIR 113 (128)
Q Consensus 110 ~~l~ 113 (128)
+.+.
T Consensus 83 ~kVL 86 (103)
T PRK09301 83 EKVL 86 (103)
T ss_pred HHHH
Confidence 4443
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=96.43 E-value=0.095 Score=38.03 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=66.1
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhH-HH-HHHHHHc--CCeEEEEEEccc--chhHHHhcCCcccCeEEEe-
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNH-FF-EELASTY--QDILFLSVDVDE--VKVVASKMEIKAMPTFILM- 95 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l-~~l~~~~--~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~- 95 (128)
++-+.|..++ .++.++|.|-+.......++.. .| ....... ..+.-++|+... ...++.-|.+..+|.+.++
T Consensus 7 nipeAIa~aK-~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEAK-GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHhh-cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 3445566554 4556666666666677777763 33 3333332 345666666543 4567788999999998888
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 96 KEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 96 ~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
..|..+....|. ..++|..-|++..
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHHHH
Confidence 789999999999 8899988887753
No 229
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.36 E-value=0.042 Score=29.92 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=42.0
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc--chhHHHhcCCcccCeEEEee--CCeEEEEEeCCCHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE--VKVVASKMEIKAMPTFILMK--EGALVDKLVGANPQAIRK 114 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~l~~ 114 (128)
+..|+.+.||+|++..-.+... ++.|-.++.+. ...+ ..-+...+|+++.-. +|..+. +...+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 4567789999999999777664 44444444432 2232 334567899987642 233221 4455666
Q ss_pred HHHHHH
Q 033073 115 MINGFI 120 (128)
Q Consensus 115 ~i~~~~ 120 (128)
+|++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 666554
No 230
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.053 Score=35.37 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=34.5
Q ss_pred hhHHHhcCCcccCeEEEeeCCeEEEEEeC--C-CHHHHHHHHHHHHh
Q 033073 78 KVVASKMEIKAMPTFILMKEGALVDKLVG--A-NPQAIRKMINGFIH 121 (128)
Q Consensus 78 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~~ 121 (128)
..+++++++.++||+++-++|+..---.| + +++.+..++...+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 35677899999999999999987765556 3 77888888877654
No 231
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.25 E-value=0.0068 Score=35.45 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
..|+.++|+.|++....|++ .++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-----HGIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCCcEEEeeccC
Confidence 57889999999999887776 4667777777553
No 232
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.21 E-value=0.08 Score=28.95 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=40.9
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc----hhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV----KVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRK 114 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 114 (128)
+..++.++|++|++..-.+.+. ++.|-.++++.. +++...-+...+|+++.-.+|.. -.....+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHH
Confidence 3456778999999988777764 444444554432 23434445678999864223322 124555666
Q ss_pred HHHH
Q 033073 115 MING 118 (128)
Q Consensus 115 ~i~~ 118 (128)
+|++
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 6654
No 233
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.21 E-value=0.037 Score=35.42 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=33.5
Q ss_pred HHhcCCCcEEEEEeCCCChh-hHHhhHHHHHHHHHc----CCeEEEEEEcc
Q 033073 30 KATNQGCPVVVHFTAAWCMP-SVAMNHFFEELASTY----QDILFLSVDVD 75 (128)
Q Consensus 30 ~~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~l~~~~----~~~~~~~v~~~ 75 (128)
..+.++++++|.|.-..||. |-.....+.++.+.. .++.++.|.+|
T Consensus 47 ~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 47 LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 33447999999999999954 887777777776655 36778777776
No 234
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=96.15 E-value=0.085 Score=28.66 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-chhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHH
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-VKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGF 119 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 119 (128)
.++.++|++|+++.-.++...- .+.+..++..+ ...+........+|++. .+|..+. +...+.++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 3678899999998877765333 23445555444 35566677788999998 4566333 556677777766
Q ss_pred Hhh
Q 033073 120 IHS 122 (128)
Q Consensus 120 ~~~ 122 (128)
..+
T Consensus 71 ~~~ 73 (75)
T PF13417_consen 71 YPG 73 (75)
T ss_dssp STS
T ss_pred cCC
Confidence 543
No 235
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.12 E-value=0.15 Score=33.63 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=53.3
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc--c----------------hhHHHhcCCc--ccCeEEEeeCC
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE--V----------------KVVASKMEIK--AMPTFILMKEG 98 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~--~----------------~~~~~~~~v~--~~Pt~~~~~~g 98 (128)
|=+|.+.+|+.|-.....|.+|..+ +++..+...+|- . ......++.. .+|.+++ +|
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 4568888999999999999999998 577777666652 1 2334445544 4777877 88
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhh
Q 033073 99 ALVDKLVGANPQAIRKMINGFIHS 122 (128)
Q Consensus 99 ~~~~~~~g~~~~~l~~~i~~~~~~ 122 (128)
.... .|.+...+...|.+....
T Consensus 79 ~~~~--~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REHR--VGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEEE--ETT-HHHHHHHHHHHHHT
T ss_pred eeee--eccCHHHHHHHHHHhhcc
Confidence 7554 488999999999988765
No 236
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.08 E-value=0.031 Score=30.05 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=37.1
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-chhHHHhcCCcccCeEEEeeCCeE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-VKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
..|+.+||++|++..-.+++..-. +.+..++... .+.+.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 357789999999988777664332 3555555443 345555567789999964 23543
No 237
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.98 E-value=0.15 Score=30.05 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEcccchhHHHh----cCCc-ccCe
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDEVKVVASK----MEIK-AMPT 91 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~~----~~v~-~~Pt 91 (128)
..+++.++.... .++..++.|-.+-.+.-..+.+.++++++.+ +++.|+=||-|+.|-+... |+|. .-|.
T Consensus 7 ~~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 7 KPENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred cHHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 445555555433 5688889999999999999999999999998 6899999999998766543 4442 2487
Q ss_pred EEEee--C-CeEEEEE-e--C-CCHHHHHHHHHHH
Q 033073 92 FILMK--E-GALVDKL-V--G-ANPQAIRKMINGF 119 (128)
Q Consensus 92 ~~~~~--~-g~~~~~~-~--g-~~~~~l~~~i~~~ 119 (128)
+=++. + ..+.... . . .+.++|..||+..
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 76662 2 2222222 1 2 2789999999865
No 238
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.94 E-value=0.0028 Score=43.78 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=63.7
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc-ccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV-DEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQA 111 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 111 (128)
+..++-+.||+.|||..+..+|.+.-....++.+....++- ..-+.++.+|++.+.|++++...--.. .+-|. +...
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~-~~~~~r~l~s 153 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPA-SYRGERDLAS 153 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeeccccch-hhcccccHHH
Confidence 46789999999999999999999988888886555444322 234678899999999998887432222 22244 7788
Q ss_pred HHHHHHHHHh
Q 033073 112 IRKMINGFIH 121 (128)
Q Consensus 112 l~~~i~~~~~ 121 (128)
|.++..++..
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 8888777654
No 239
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.06 Score=34.12 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc--------chh----HHHhcCCc----
Q 033073 26 LFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE--------VKV----VASKMEIK---- 87 (128)
Q Consensus 26 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~--------~~~----~~~~~~v~---- 87 (128)
+.+....++++.++|.=-|+-|+.-..--..|+.|.++| .++.++...+.. +.+ +..+|+..
T Consensus 25 ~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if 104 (171)
T KOG1651|consen 25 EYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIF 104 (171)
T ss_pred CCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccE
Confidence 445555568999999999999999886667888888888 478888776642 111 22333320
Q ss_pred ---------------------------ccC----eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 88 ---------------------------AMP----TFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 88 ---------------------------~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
.+. -|++-++|+++.++... ++..++.-|++++.
T Consensus 105 ~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 105 QKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred eEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 222 36666899999999766 77777777777764
No 240
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=95.71 E-value=0.065 Score=36.34 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=36.8
Q ss_pred CCCcEEEEEeCCCChhhHHhh-HHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEe
Q 033073 34 QGCPVVVHFTAAWCMPSVAMN-HFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILM 95 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~-~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 95 (128)
.+|+.+++..+.|||.|-..+ +..-.|.+ |.++.+.....+. .-.-..+|+++|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr-fGn~~l~~~~S~~------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSR-FGNFSLEYHYSDP------YDNYPNTPTLIFN 112 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHh-cCCeeeEEeecCc------ccCCCCCCeEEEe
Confidence 799999999999999998766 55555554 5666443333222 1123578887776
No 241
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.69 E-value=0.066 Score=27.80 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=35.8
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch--hHHHhcCCcccCeEEEeeCCeE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK--VVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
..|+.++|+.|++....++...-. +....++..... .+....+...+|++.. +|..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 357788999999888887765332 244444443322 2455667889998875 4543
No 242
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=95.68 E-value=0.06 Score=36.01 Aligned_cols=84 Identities=25% Similarity=0.315 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc--c----------------chhHHHhcCCcccCeEEEee
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD--E----------------VKVVASKMEIKAMPTFILMK 96 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~--~----------------~~~~~~~~~v~~~Pt~~~~~ 96 (128)
..-||=+|.+..|..|-.....+.+++.+ +++.-+...+| + ....+..|+..+++|=..+-
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 34566677788999999999999999988 66555544443 1 13456677888887755555
Q ss_pred CCeEEEEEeCCCHHHHHHHHHHHHh
Q 033073 97 EGALVDKLVGANPQAIRKMINGFIH 121 (128)
Q Consensus 97 ~g~~~~~~~g~~~~~l~~~i~~~~~ 121 (128)
+|+.... |.++.++...|....+
T Consensus 120 nGr~~~~--Gad~~~i~~~i~a~~~ 142 (261)
T COG5429 120 NGRVHAN--GADPGAIEDAIAAMAR 142 (261)
T ss_pred echhhhc--CCCHHHHHHHHHHhhc
Confidence 8876655 7889999988887654
No 243
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.66 E-value=0.022 Score=33.77 Aligned_cols=34 Identities=12% Similarity=0.322 Sum_probs=26.4
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK 78 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 78 (128)
..|+.++|+.|++....|++ .++.|-.+|+...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCc
Confidence 46789999999999888776 46777777776543
No 244
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.64 E-value=0.03 Score=33.40 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=27.5
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV 79 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 79 (128)
..|+.++|+.|++....|++ .++.|-.+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCChh
Confidence 46789999999999988877 477778888776543
No 245
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.59 E-value=0.23 Score=29.20 Aligned_cols=70 Identities=9% Similarity=0.186 Sum_probs=47.8
Q ss_pred eeecCChhhHHHHHHHHhcCC-CcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 15 VARVNSEKSWDLFITKATNQG-CPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
+..|.+.++++..+. .. ..+||-|+..--+ .....+.++++.+ .++.|+.... ..+..++++.. |.+
T Consensus 2 v~~i~s~~ele~f~~----~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~v 70 (107)
T cd03068 2 SKQLQTLKQVQEFLR----DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQL 70 (107)
T ss_pred ceEcCCHHHHHHHHh----cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-Cce
Confidence 567778888888776 45 7777777766433 3456677788887 6788866543 36667787764 556
Q ss_pred EEe
Q 033073 93 ILM 95 (128)
Q Consensus 93 ~~~ 95 (128)
++|
T Consensus 71 vl~ 73 (107)
T cd03068 71 VVF 73 (107)
T ss_pred EEE
Confidence 666
No 246
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.57 E-value=0.035 Score=33.93 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=24.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
+..|+.++|+.|++....|++ .++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-----~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-----HDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEeeccC
Confidence 457789999999998877765 366666677653
No 247
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=95.55 E-value=0.0083 Score=33.63 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=46.3
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
.|-+...+........++.+.+.+ ..+.+-.||+.+.|.+++.+++-.+||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 355666777888889999998886 469999999999999999999999999873
No 248
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.38 E-value=0.22 Score=30.68 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=53.5
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCc----ccCeEEEeeCCeEEEEEeCCCHH
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIK----AMPTFILMKEGALVDKLVGANPQ 110 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~----~~Pt~~~~~~g~~~~~~~g~~~~ 110 (128)
...-++.++.|.|+=|..+...++. .++.+-.+..++-..+.++++|. +==|.++ +|..+..+. -.+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHV--Pa~ 94 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVEGHV--PAE 94 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEeccC--CHH
Confidence 3456788899999999998887773 57888889888888888888874 2335555 776555332 455
Q ss_pred HHHHHHHH
Q 033073 111 AIRKMING 118 (128)
Q Consensus 111 ~l~~~i~~ 118 (128)
.+..++.+
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 56665543
No 249
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.38 E-value=0.33 Score=29.71 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCe
Q 033073 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
..+.+.+.++...+.++|+.=+-.+. -+.....+.+|...-.. .++.=+|.+.++|+|+.+|+|++.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~--~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNG--FKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCC--HHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCC
Confidence 34555555554344444443333331 12333333444333222 3333468999999999999999998764
No 250
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.37 E-value=0.057 Score=36.00 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=33.3
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhhhhc
Q 033073 79 VVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHSVRL 125 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~ 125 (128)
..+++.||+++|+|+| +|+ ....|. +++.+...|.+++...++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhcccc
Confidence 4567889999999999 444 234488 899999999999876553
No 251
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=95.24 E-value=0.086 Score=28.13 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=34.8
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~ 94 (128)
..|+.++|++|++..-.+....-.| ....++.. ..+.+........+|+++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577889999999998887754333 33444432 2344555566788999975
No 252
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.14 E-value=0.038 Score=32.43 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=25.7
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
..|+.++|+.|++....|++ .++.|-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccC
Confidence 57889999999998887766 4667777777654
No 253
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.07 E-value=0.06 Score=28.81 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=29.9
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
.++.++||+|++..-.+....-. +....++...........+-..+|+++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 56788999999888777664222 2333344332223333445567898854
No 254
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=94.67 E-value=0.51 Score=28.58 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=36.2
Q ss_pred CCeEEEEEEcccchh----------HHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHh
Q 033073 65 QDILFLSVDVDEVKV----------VASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIH 121 (128)
Q Consensus 65 ~~~~~~~v~~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 121 (128)
.++.+.+.|..++|. +..+-|...+|-+++ +|+++..-.-++.++|.+|+.--..
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence 589999999987643 445568899998777 9999887433399999999865543
No 255
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.63 E-value=0.11 Score=30.83 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
+..|+.++|+.|++....|++ .++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-----~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-----HQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCceEEEecCCC
Confidence 456788999999998888876 3666777776544
No 256
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.40 E-value=0.28 Score=26.14 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=32.5
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc-chhHHHhcCCcccCeEE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE-VKVVASKMEIKAMPTFI 93 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~-~~~~~~~~~v~~~Pt~~ 93 (128)
..|+.++|+.|++..-.++...-.| ....++... .+.+........+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4677899999999987776543332 333344433 23455555677999775
No 257
>PRK12559 transcriptional regulator Spx; Provisional
Probab=94.36 E-value=0.11 Score=31.85 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=23.6
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
+..|+.++|+.|++....|++ .++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-----NQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCeEEEEee
Confidence 567889999999998877665 35566666654
No 258
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.33 E-value=0.61 Score=27.74 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHH---HHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeC
Q 033073 21 EKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEE---LASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKE 97 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~---l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 97 (128)
.+.+.+.+.++...+-++|+.=+-+. .+.+..+. |..+-+.. .++.=+|.+.++|+|+.+|++++.++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g-----~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG-----SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC-----CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 34566666665433323322222223 44555444 44433222 34444689999999999999999877
No 259
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.4 Score=34.55 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAI 112 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 112 (128)
.+..-+=-|++-.|..|-.+-..|+-++-..|++....||.-..++-.+.-+|-++||+++ +|+.... |. +.+++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeHHHH
Confidence 5666677777889999999888888888777999999999887777777789999999876 7766554 55 66766
Q ss_pred HHHHHH
Q 033073 113 RKMING 118 (128)
Q Consensus 113 ~~~i~~ 118 (128)
...|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 666543
No 260
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=94.14 E-value=0.22 Score=26.66 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=35.0
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc----chhHHHhcCCcccCeEEE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE----VKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~~ 94 (128)
..|+.++|+.|++..-.++...-. +....++... .+.+........+|+++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 367889999999888777765433 3444455422 255666666789999964
No 261
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.90 E-value=0.17 Score=33.92 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=36.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-----CCeEEEEEEccc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY-----QDILFLSVDVDE 76 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-----~~~~~~~v~~~~ 76 (128)
.+..+||.+-..+|..|..-...|+.|..++ ++|.|+.||--.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 7899999999999999998888887776554 689999998653
No 262
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.22 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=36.6
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc------------ccchhH--HHhcCCcccCeEEEeeCCeEE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV------------DEVKVV--ASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~------------~~~~~~--~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
+.|++..||.|..+.+.++++.-+| .++.|-. |..+.+ .+..+.-++|.++. .+|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y---d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY---DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc---eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6899999999999888888765544 2222211 122222 34456778999876 455544
No 263
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=93.63 E-value=0.69 Score=27.35 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc--------hhHHHhcCCcccCeEEEeeCCe
Q 033073 30 KATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV--------KVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 30 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~--------~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.+++++++++|.=.|+-|+.-. --..|++|.++| .++.++...+.+- .++..-..-..-++|-++...
T Consensus 16 l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ki- 93 (108)
T PF00255_consen 16 LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEKI- 93 (108)
T ss_dssp GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-B-
T ss_pred HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEEE-
Confidence 3446899999999999999988 667889999999 4788888887642 233332222234566666442
Q ss_pred EEEEEeCCCHHHHHHHH
Q 033073 100 LVDKLVGANPQAIRKMI 116 (128)
Q Consensus 100 ~~~~~~g~~~~~l~~~i 116 (128)
...|.+..-|-+|+
T Consensus 94 ---~VnG~~ahPly~~L 107 (108)
T PF00255_consen 94 ---DVNGPDAHPLYKYL 107 (108)
T ss_dssp ---BSSSTTB-HHHHHH
T ss_pred ---EecCCCCcHHHHHh
Confidence 23344555555554
No 264
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.61 E-value=0.34 Score=27.24 Aligned_cols=53 Identities=6% Similarity=0.142 Sum_probs=34.1
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCCcccCeEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v~~~Pt~~~ 94 (128)
+..|+.+.|++|++..-.+....-. +.+..++.... ..+........+|.++.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4456678899999887777664332 34445554433 33555556788999975
No 265
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=93.16 E-value=0.23 Score=30.42 Aligned_cols=33 Identities=6% Similarity=0.296 Sum_probs=24.1
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
+..|+.++|+.|++....|++ .++.|-.+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEECCC
Confidence 456778999999998766655 366677777643
No 266
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.88 E-value=0.27 Score=31.78 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=25.6
Q ss_pred hhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHH
Q 033073 78 KVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMI 116 (128)
Q Consensus 78 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 116 (128)
...+.+.|+.++||+++ +|+.. ..|. +.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKYA--VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence 34566789999999998 66532 4577 778887765
No 267
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=2.5 Score=27.34 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=54.7
Q ss_pred HHHHhcCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcc----------------------------c
Q 033073 28 ITKATNQGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVD----------------------------E 76 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~----------------------------~ 76 (128)
+...++.++.+++.|| .++--.|-...-.+.+.+.+| -+..++.+.+| .
T Consensus 26 ~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~ 105 (196)
T KOG0852|consen 26 IKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDL 105 (196)
T ss_pred EeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeecc
Confidence 4444558899999998 344444433333444445555 24455555443 2
Q ss_pred chhHHHhcCC----cccC---eEEEeeCCeEEE---E--EeCCCHHHHHHHHHHHH
Q 033073 77 VKVVASKMEI----KAMP---TFILMKEGALVD---K--LVGANPQAIRKMINGFI 120 (128)
Q Consensus 77 ~~~~~~~~~v----~~~P---t~~~~~~g~~~~---~--~~g~~~~~l~~~i~~~~ 120 (128)
+..+++.||+ .+++ .+++..+|.... . -.|.+-++..+.|+...
T Consensus 106 ~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 106 NHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred chhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 4678889987 4566 355556775543 1 13457788888887653
No 268
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=91.35 E-value=2.2 Score=26.12 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=53.0
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhh-HHhhHHH-HHHHHHc-CC-eEEEEEEcccc--hhHHHhc-
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPS-VAMNHFF-EELASTY-QD-ILFLSVDVDEV--KVVASKM- 84 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C-~~~~~~l-~~l~~~~-~~-~~~~~v~~~~~--~~~~~~~- 84 (128)
...+.++.+.++.++.+.. ..+.++|..- +-|+=- -..+|-. ..+...- |+ +.-+....|.. ......|
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~~---~~GTtlVvVN-SVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALKN---KEGTTLVVVN-SVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp TTT-EE--SHHHHHHHHHH-----SEEEEEEE--SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTST
T ss_pred HcCccccCCHHHHHHHHhC---CCCcEEEEEe-ccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcC
Confidence 4567889999999999984 3445554444 445421 2333443 3333322 43 33233333322 2222222
Q ss_pred C-CcccCeEEEeeCCeEEEEEe-----CCCHHHHHHHHHHHHh
Q 033073 85 E-IKAMPTFILMKEGALVDKLV-----GANPQAIRKMINGFIH 121 (128)
Q Consensus 85 ~-v~~~Pt~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~~ 121 (128)
+ -.+-|++-+|++|+++.... |.+++.+..-|.....
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 1 24678999999999987554 5567777776665543
No 269
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=90.82 E-value=1.6 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=35.7
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEEeeCCeE
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
..|+.+.|+.|+++.-.++++.-. +.+..++.. ..+.+.+.-....+|+++ .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 467788999998887666554332 355555553 233466666678899996 36643
No 270
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.20 E-value=5.4 Score=28.70 Aligned_cols=105 Identities=10% Similarity=0.133 Sum_probs=66.8
Q ss_pred eeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc---CCeEEEEEEcccchhHHH----hcCCc
Q 033073 15 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY---QDILFLSVDVDEVKVVAS----KMEIK 87 (128)
Q Consensus 15 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~v~~~~~~~~~~----~~~v~ 87 (128)
+..+ .+.++.++.... .++..+|.|-....|.-..+...++++++.. +++.++-||-++-|-+.. -|+|.
T Consensus 251 lrkl-~~~~m~e~Wedd--~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 251 LRKL-RPEDMFETWEDD--IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp EEE---GGGHHHHHHSS--SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred hhhC-Chhhhhhhhccc--CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 4445 566666655543 5678888898899999999999999999987 689999999999876654 34542
Q ss_pred -ccCeEEEee--CCeEEEE-Ee---CC-CHHHHHHHHHHHHhh
Q 033073 88 -AMPTFILMK--EGALVDK-LV---GA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 88 -~~Pt~~~~~--~g~~~~~-~~---g~-~~~~l~~~i~~~~~~ 122 (128)
.-|.+-++. +-.-+.. .. .. +.++|+.||+..++.
T Consensus 328 l~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg 370 (383)
T PF01216_consen 328 LSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSG 370 (383)
T ss_dssp TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCT
T ss_pred ccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcC
Confidence 248877773 3333322 22 22 789999999998754
No 271
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=1.8 Score=28.80 Aligned_cols=71 Identities=20% Similarity=0.433 Sum_probs=48.4
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
.|.-..|-.|..+...++.-. ..+++.| ++....+.+.-+-+|-++|++.+ +|+.+.. ++ +++++++.++.
T Consensus 15 I~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~~G 86 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESILSG 86 (265)
T ss_pred EEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHHcC
Confidence 344568888887766654411 1155665 45566677777778999999876 8887654 56 88888877754
No 272
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.82 E-value=1.8 Score=22.75 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=34.2
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc----chhHHHhcCCcccCeEEEeeCCeE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE----VKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
.|+.+.|+.|++..-.++...-. .....++... .+.+........+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 57788999999887777664333 3444444322 234444455678999975 4543
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.71 E-value=0.6 Score=29.92 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.8
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTY 64 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~ 64 (128)
|.+|+-+.||+|....+.++++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56788899999999999999999988
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.19 E-value=0.52 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=22.4
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHH
Q 033073 79 VVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKM 115 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 115 (128)
..+.++|+.++|||++ +|+ .+.|. ..+.+...
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~ 190 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEA 190 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHH
Confidence 4566789999999998 775 44577 44555443
No 275
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=88.47 E-value=1 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=23.8
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
+..|+.+.|+.|++....|++ .++.|-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-----~gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-----AGHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-----cCCCcEEeehhc
Confidence 456789999999988877665 356666666643
No 276
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=88.03 E-value=1.3 Score=29.19 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=24.3
Q ss_pred chhHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHH
Q 033073 77 VKVVASKMEIKAMPTFILMKEGALVDKLVGA-NPQ 110 (128)
Q Consensus 77 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 110 (128)
+|.++++|+|..+|+|++.-. .-.+...|. +..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~ 184 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVG 184 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecccHH
Confidence 588999999999999999733 334555565 543
No 277
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.51 E-value=6.1 Score=26.32 Aligned_cols=69 Identities=9% Similarity=0.008 Sum_probs=46.3
Q ss_pred CChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHh-cCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHhhhh
Q 033073 46 WCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASK-MEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~ 124 (128)
.|+.|+.+...|. .+-..+.+-.||....++.... ..-+.+|-+.+ +|+. -.+...++.+|++-+...+
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~-----~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW-----VTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce-----eccHHHHHHHHHHhcCCCC
Confidence 6899988887776 2224678888999888776654 45566776665 3321 1266778888887765543
No 278
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=87.08 E-value=5.6 Score=26.46 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCCcEEEEEe-----CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccc------------------
Q 033073 23 SWDLFITKATNQGCPVVVHFT-----AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEV------------------ 77 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~-----~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~------------------ 77 (128)
.+.++... +.+.+|-+|. ...|+.|..+...+....... .++.|+.|.-.-.
T Consensus 59 ~L~dLF~G---r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~S 135 (211)
T PF05988_consen 59 SLADLFEG---RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYS 135 (211)
T ss_pred cHHHHcCC---CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEE
Confidence 45555553 4566666666 468999999998884333333 5799998876421
Q ss_pred ---hhHHHhcCC-----cccCeEEEe-eC-CeEEEEEeC
Q 033073 78 ---KVVASKMEI-----KAMPTFILM-KE-GALVDKLVG 106 (128)
Q Consensus 78 ---~~~~~~~~v-----~~~Pt~~~~-~~-g~~~~~~~g 106 (128)
.++...|++ ...|.+-+| ++ |++...+..
T Consensus 136 s~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTyst 174 (211)
T PF05988_consen 136 SYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYST 174 (211)
T ss_pred cCCCcccccccceeccCCCceeEEEEEEcCCEEEEEeec
Confidence 234445665 467766666 54 555555543
No 279
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=85.79 E-value=4.8 Score=22.99 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchh-HHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHH
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKV-VASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFI 120 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 120 (128)
..|++|+++.-.|....- ...+..+|....+. +.+......+|+++. +|..+ .+...+.+.|++..
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i-----~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVK-----TDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEe-----cCHHHHHHHHHHHc
Confidence 479999998887766422 23445555555444 444455788997662 44322 25566777776654
No 280
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=1.1 Score=28.69 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE 76 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~ 76 (128)
.++++|++|| +...|.|.+-.--+++-.+++ .+..++.+..|+
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~ 134 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDD 134 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCc
Confidence 4568899998 445566665555555544544 356777776654
No 281
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.07 E-value=1.9 Score=25.29 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=38.7
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCc--ccCeEEE-eeCCe
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIK--AMPTFIL-MKEGA 99 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 99 (128)
||-.+||.|......+..... ...+.|+.+.......+...+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 678899999999998888732 256777777555555556667764 3444444 46776
No 282
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.83 E-value=6.3 Score=23.55 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcc-cc-----------hhHHHhcCCcccC--eEEEeeCCeEEEEEeCC
Q 033073 44 AAWCMPSVAMNHFFEELASTY--QDILFLSVDVD-EV-----------KVVASKMEIKAMP--TFILMKEGALVDKLVGA 107 (128)
Q Consensus 44 ~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~-~~-----------~~~~~~~~v~~~P--t~~~~~~g~~~~~~~g~ 107 (128)
+...+.-+.....|..-...+ .++.++.+-.+ .. ..+..+|++..-. .+++-++|.+-.+....
T Consensus 19 s~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p 98 (118)
T PF13778_consen 19 SADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEP 98 (118)
T ss_pred CCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCC
Confidence 345565566666666633344 57777776332 22 3677888865322 33444899888887777
Q ss_pred -CHHHHHHHHHHH
Q 033073 108 -NPQAIRKMINGF 119 (128)
Q Consensus 108 -~~~~l~~~i~~~ 119 (128)
+.++|-..|+.+
T Consensus 99 ~~~~~lf~~ID~M 111 (118)
T PF13778_consen 99 IDPEELFDTIDAM 111 (118)
T ss_pred CCHHHHHHHHhCC
Confidence 999999988765
No 283
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=84.79 E-value=1.9 Score=25.61 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.7
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
..|+.+.|+.|++....|++ .++.|-.+|.-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-----KGIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEeccCC
Confidence 46889999999998888776 3666666766543
No 284
>COG3411 Ferredoxin [Energy production and conversion]
Probab=84.05 E-value=3.7 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=23.6
Q ss_pred cCeEEEeeCCeEEEEEe-CCCHHHHHHHHHHHHhh
Q 033073 89 MPTFILMKEGALVDKLV-GANPQAIRKMINGFIHS 122 (128)
Q Consensus 89 ~Pt~~~~~~g~~~~~~~-g~~~~~l~~~i~~~~~~ 122 (128)
=|++++|.+| .+. ..+++...+++++++..
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHhC
Confidence 4899999998 233 44999999999998764
No 285
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=84.04 E-value=0.79 Score=34.75 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=44.1
Q ss_pred HHHHhcCCCcEEEEEeCCCChhhHHhhHH-H--HHHHHHc-CCeEEEEEEcccchhHHH--------hcCCcccCeEEEe
Q 033073 28 ITKATNQGCPVVVHFTAAWCMPSVAMNHF-F--EELASTY-QDILFLSVDVDEVKVVAS--------KMEIKAMPTFILM 95 (128)
Q Consensus 28 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~~~~~~v~~~~~~~~~~--------~~~v~~~Pt~~~~ 95 (128)
...++.+++|+++-..-..|.+|..|... + ++..+.. .++.=+.||.++-|++-+ -.+-.++|.-+++
T Consensus 105 f~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~L 184 (786)
T KOG2244|consen 105 FNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFL 184 (786)
T ss_pred HHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEe
Confidence 33333489999999999999999888754 3 2334333 344445555555555433 3466788887777
No 286
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=83.84 E-value=4.8 Score=21.39 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=33.0
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~ 93 (128)
+-.|+.+.|+.|++..-.+....-. +....++.. ..+.+........+|.++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3455567799999888777765433 344444442 234556666778899886
No 287
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=83.77 E-value=2.2 Score=25.19 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=23.4
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
..|+.+.|..|++....|++ .++.|-.+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-----AGIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEeccc
Confidence 46789999999998766665 366666666643
No 288
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=81.07 E-value=6.6 Score=28.07 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=49.7
Q ss_pred CChhhHHhh----HHHHHHHHHc----CCeEEEEEEcccch---hHHHhcCCcc--cCeEEEeeCCeEEEEEeCC-CHHH
Q 033073 46 WCMPSVAMN----HFFEELASTY----QDILFLSVDVDEVK---VVASKMEIKA--MPTFILMKEGALVDKLVGA-NPQA 111 (128)
Q Consensus 46 ~C~~C~~~~----~~l~~l~~~~----~~~~~~~v~~~~~~---~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~-~~~~ 111 (128)
-||.|-+.. ..++++.+.+ ..+.+..+.+--|. ..-..+|+.+ .|...+|.+|+.+.+..+. -.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 588885443 3345555544 23566555553221 2234566643 6889999999999997777 5788
Q ss_pred HHHHHHHHHhhh
Q 033073 112 IRKMINGFIHSV 123 (128)
Q Consensus 112 l~~~i~~~~~~~ 123 (128)
|...|+++....
T Consensus 343 l~~~i~~~~~~~ 354 (361)
T COG0821 343 LEALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHHh
Confidence 888888886543
No 289
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=80.71 E-value=11 Score=23.35 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=48.8
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCccc-C-eEEEeeCCeEEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAM-P-TFILMKEGALVD 102 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~-P-t~~~~~~g~~~~ 102 (128)
.+++-.+.+|--.|+.|-.....|.+.-.. ..+.|..+..+....+....++..- + ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 567788899999999999866655542221 5789999988888788887776543 3 566667776543
No 290
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=80.46 E-value=10 Score=24.78 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCCcccCeEEEeeCCe
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
+...+-.|+.++|+.|++..-.++...- .+.+..+|..+. +.+........+|+++. +|.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~ 67 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--REL 67 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 4445566667899999998877766432 245555665433 35555556788999963 554
No 291
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=79.53 E-value=2.3 Score=27.94 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHhcCCcccCeEEEeeCCeEEEEEeCCC-HHHHHHH
Q 033073 80 VASKMEIKAMPTFILMKEGALVDKLVGAN-PQAIRKM 115 (128)
Q Consensus 80 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~-~~~l~~~ 115 (128)
.+.+.|+.++|+|++-.++..-..+.|.+ .+.++++
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~ 207 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADF 207 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHH
Confidence 34567999999999964322123566774 4444443
No 292
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.27 E-value=10 Score=22.18 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhcCCCcEEEEEe-C---CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcC-CcccCeE-EEe
Q 033073 22 KSWDLFITKATNQGCPVVVHFT-A---AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKME-IKAMPTF-ILM 95 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~-~---~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~ 95 (128)
+.+++.+. +.+++++.- + |-|++..+....|.... -+.|..+|+-.++++.+... ...+||| .+|
T Consensus 6 ~~I~~~i~-----~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 6 DRIQKQIK-----ENPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred HHHHHHhh-----cCceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceee
Confidence 34445554 444444443 3 56777666665554432 27899999999988877664 4567764 334
Q ss_pred eCCeEEE
Q 033073 96 KEGALVD 102 (128)
Q Consensus 96 ~~g~~~~ 102 (128)
-+|..+.
T Consensus 77 i~GEfvG 83 (105)
T COG0278 77 VNGEFVG 83 (105)
T ss_pred ECCEEec
Confidence 5887665
No 293
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=79.01 E-value=4.6 Score=24.03 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=35.9
Q ss_pred CChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-hHHHhcC--CcccCeEEEee
Q 033073 46 WCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-VVASKME--IKAMPTFILMK 96 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-~~~~~~~--v~~~Pt~~~~~ 96 (128)
-|++|..++-.|...-..-..+.+.+|+...-. .+....| -++.|.+|+-.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 499999998887654433356889999888754 3344443 47899998864
No 294
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.93 E-value=7.7 Score=20.43 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=33.3
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc-cchhHHHhcCCcccCeEEEeeCCe
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD-EVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~-~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.|+.+.|++|.+..-.+...... -.+..+.++.. ..+.+........+|.++. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~-i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLG-DDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCC-CCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 56678899999877766652111 12344445432 2345555556788998764 2443
No 295
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=76.70 E-value=9.2 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=22.9
Q ss_pred EEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhH
Q 033073 40 VHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVV 80 (128)
Q Consensus 40 v~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~ 80 (128)
|.+|.+.+.....+...-+++..-+ .+|.|-.+|+..+...
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 4445455555556665555555544 6899999999876544
No 296
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.53 E-value=2.8 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=16.9
Q ss_pred hHHHhcCCcccCeEEEeeCCe
Q 033073 79 VVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 455678999999999987654
No 297
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=76.37 E-value=6.4 Score=23.60 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhHHhhHHHHH
Q 033073 39 VVHFTAAWCMPSVAMNHFFEE 59 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~ 59 (128)
+-.|+.|.|..|++....|++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 557789999999999888776
No 298
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=75.34 E-value=11 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 80 VASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 80 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
-+..+||+.+|.++|. ++.+-+ |. +...-...++.+
T Consensus 75 ~Aw~lgi~k~PAVVfD--~~~VVY--G~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD--DRYVVY--GETDVARALARIEQW 111 (114)
T ss_pred HHHHhCccccCEEEEc--CCeEEe--cccHHHHHHHHHHHH
Confidence 4567899999999994 443333 66 555444444443
No 299
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=74.46 E-value=9.3 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=21.2
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
|+-+.|..|++....|++ .++.|-.+|....
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhC
Confidence 567899999999888876 5777778888654
No 300
>PRK10853 putative reductase; Provisional
Probab=74.37 E-value=6.5 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
+..|+-+.|..|++....|++ .++.|-.+|.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-----QGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-----cCCCcEEeehc
Confidence 456778999999998887775 36666666654
No 301
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=74.19 E-value=20 Score=22.85 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=51.6
Q ss_pred cCCCcEEEEEeCCCChhhHHhhHHHHHHHHH-cC--Ce-EEEEEEcccc-----------------------------hh
Q 033073 33 NQGCPVVVHFTAAWCMPSVAMNHFFEELAST-YQ--DI-LFLSVDVDEV-----------------------------KV 79 (128)
Q Consensus 33 ~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~-~~--~~-~~~~v~~~~~-----------------------------~~ 79 (128)
..+|.-+|..-|-....-..-.|..+.+.+. ++ +. ..-.||.|+. ..
T Consensus 35 l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~ 114 (160)
T PF09695_consen 35 LPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGV 114 (160)
T ss_pred cCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCc
Confidence 3567666666665555555556777777766 43 22 3334555432 22
Q ss_pred HHHhcCCccc-CeEEEe-eCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 80 VASKMEIKAM-PTFILM-KEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 80 ~~~~~~v~~~-Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
+...|++..- -.++++ ++|++.....|. +++++.++|.-
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 2233333322 235555 789999888888 99999888764
No 302
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=73.64 E-value=3.6 Score=29.54 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCcEEEEEeCCCChhhHHhh----HHHHHHHHHc----CCeEEEEEEcccch-h--HHHhcCCc-ccC-eEEEeeCCeE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMN----HFFEELASTY----QDILFLSVDVDEVK-V--VASKMEIK-AMP-TFILMKEGAL 100 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~----~~l~~l~~~~----~~~~~~~v~~~~~~-~--~~~~~~v~-~~P-t~~~~~~g~~ 100 (128)
..++-+| .||.|-+.. ...+++.+.. .++++..+.+-=|. . --..||+. +-| ..++|++|+.
T Consensus 263 ~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~ 337 (359)
T PF04551_consen 263 KRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV 337 (359)
T ss_dssp -SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE
T ss_pred cCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE
Confidence 3455554 466664433 3345555544 37888888876542 2 22357766 445 5888999999
Q ss_pred EEEE-eCC-CHHHHHHHHHHH
Q 033073 101 VDKL-VGA-NPQAIRKMINGF 119 (128)
Q Consensus 101 ~~~~-~g~-~~~~l~~~i~~~ 119 (128)
+.+. ... -.++|.+.|+++
T Consensus 338 v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 338 VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHhh
Confidence 9997 444 357777777764
No 303
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=73.55 E-value=6.7 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=20.8
Q ss_pred cccCeEEEee-CCeEEEEEe--CCCHHHHHHHHHHH
Q 033073 87 KAMPTFILMK-EGALVDKLV--GANPQAIRKMINGF 119 (128)
Q Consensus 87 ~~~Pt~~~~~-~g~~~~~~~--g~~~~~l~~~i~~~ 119 (128)
..-|+++++. +|+++.+.. +.+.+++.+++.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 5678999984 788776654 33899999998764
No 304
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=73.44 E-value=18 Score=26.16 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=55.0
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhH-HhhHHHHHHHHHcC----CeEEEEEEcc-cch--hHHHhc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSV-AMNHFFEELASTYQ----DILFLSVDVD-EVK--VVASKM 84 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~-~~~~~l~~l~~~~~----~~~~~~v~~~-~~~--~~~~~~ 84 (128)
.++.++....++-+.+... ...+.++- =|.|+.|+ .......++.+.+. .+++....+. ..+ .-...+
T Consensus 244 ~P~~EV~va~~IL~slglr--~~g~~Iis--CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDI 319 (360)
T PRK00366 244 DPVEEVKVGQEILQSLGLR--SRGPEVIS--CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADI 319 (360)
T ss_pred CCHHHHHHHHHHHHHcCCc--cCCCeEEE--CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcE
Confidence 3444443333344444332 33445442 23344443 23344566666661 3677776664 222 334567
Q ss_pred CCcccC-eEEEeeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033073 85 EIKAMP-TFILMKEGALVDKLVGA-NPQAIRKMINGF 119 (128)
Q Consensus 85 ~v~~~P-t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 119 (128)
|+.+-+ ..++|.+|+++.+.... -.++|.+.|+++
T Consensus 320 GIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 320 GIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred eEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 776554 68888999999887654 345565556554
No 305
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=72.32 E-value=16 Score=20.87 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCeEEEEEEcccchhHHHhc--------CCcccCeEEEeeCCeEEE
Q 033073 65 QDILFLSVDVDEVKVVASKM--------EIKAMPTFILMKEGALVD 102 (128)
Q Consensus 65 ~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~g~~~~ 102 (128)
.++.|-.+|++.++.....+ +-..+|.+.+ ++..+.
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 58999999998776554332 2356676654 665444
No 306
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=71.48 E-value=13 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=32.4
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc---cchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD---EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~---~~~~~~~~~~v~~~Pt~~~ 94 (128)
.|+.+.|+.|.+..-.++...- .+.+..++.. ..+.+........+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4567788988877766665322 3455555553 2345555566789999975
No 307
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=71.40 E-value=13 Score=19.59 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=30.2
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCC-cccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEI-KAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v-~~~Pt~~~ 94 (128)
.++.+.|++|.+..-.+....-.+ ....++.... +.+...... ..+|++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 456778999999887776643333 3334444322 233333333 68998863
No 308
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=70.69 E-value=11 Score=22.86 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=23.1
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
+..|+-+.|..|++....|++ .++.|-.+|.-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-----~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-----SGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCCcEEEecc
Confidence 456778999999998887766 35555555553
No 309
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=70.47 E-value=22 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=22.2
Q ss_pred EEEe--CCCChhhHHhhHHHHHHHHHcCCeEEEEEE
Q 033073 40 VHFT--AAWCMPSVAMNHFFEELASTYQDILFLSVD 73 (128)
Q Consensus 40 v~f~--~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 73 (128)
|..| .+-|+.|.. ++++...+||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 4444 456777774 788888899988877654
No 310
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=69.36 E-value=33 Score=23.42 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=34.0
Q ss_pred CCCcEEEEEeCCC------ChhhHHhhHHHHHHHHHcC-CeEEEEEEcccchhHHHh----cCCcccC
Q 033073 34 QGCPVVVHFTAAW------CMPSVAMNHFFEELASTYQ-DILFLSVDVDEVKVVASK----MEIKAMP 90 (128)
Q Consensus 34 ~~~~~vv~f~~~~------C~~C~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~----~~v~~~P 90 (128)
-++++-|.+|.+. -+.=..+...|++....-+ ++.+-.+|.+.++...++ +|+..++
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 4566666666554 2223333334444444335 799999999877766655 7876633
No 311
>PRK10026 arsenate reductase; Provisional
Probab=68.97 E-value=12 Score=23.29 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=23.3
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
+..|+-+.|+.|++....|++- ++.|-.+|.-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 4577789999999998877763 5555555553
No 312
>PRK10387 glutaredoxin 2; Provisional
Probab=68.67 E-value=19 Score=23.29 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=28.3
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
.++.+.||+|.++.-.++...-.| ....++...........+...+|+++.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~~ 53 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQK 53 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEEe
Confidence 345678999998887766643332 333333322222222334567999854
No 313
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=68.38 E-value=18 Score=21.64 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=19.6
Q ss_pred HHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHH
Q 033073 80 VASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRK 114 (128)
Q Consensus 80 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~ 114 (128)
-+..+||+.+|.++| |++.+-+ |. +...-..
T Consensus 76 ~Aw~lGi~k~PAVV~--D~~~VVY--G~~DV~~A~~ 107 (113)
T TIGR03757 76 DAWQLGVTKIPAVVV--DRRYVVY--GETDVARALA 107 (113)
T ss_pred HHHHcCCccCCEEEE--cCCeEEe--cCccHHHHHH
Confidence 356789999999999 4443332 55 4443333
No 314
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.18 E-value=20 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred CCcEEEEEeC-CCChhhHHhhHHHHHHHHHcC
Q 033073 35 GCPVVVHFTA-AWCMPSVAMNHFFEELASTYQ 65 (128)
Q Consensus 35 ~~~~vv~f~~-~~C~~C~~~~~~l~~l~~~~~ 65 (128)
...+-|++|+ .-||+|-.-.+.|+++...++
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 4455566665 589999999999999999885
No 315
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=65.41 E-value=16 Score=20.91 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.5
Q ss_pred cccCeEEEee--CCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 87 KAMPTFILMK--EGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 87 ~~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
+.=|++++|. +|. +.+. +++++...|++++..
T Consensus 51 ~~gp~vvvyP~~~g~----wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 51 KFAGNVIIYPKGDGI----WYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred CcCCEEEEEeCCCee----EEeecCHHHHHHHHHHHhcC
Confidence 4569999999 763 3344 999999999988765
No 316
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.09 E-value=6 Score=28.27 Aligned_cols=89 Identities=10% Similarity=0.015 Sum_probs=46.4
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhH-HhhHHHHHHHHHc----CCeEEEEEEcccch---hHHHhc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSV-AMNHFFEELASTY----QDILFLSVDVDEVK---VVASKM 84 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~-~~~~~l~~l~~~~----~~~~~~~v~~~~~~---~~~~~~ 84 (128)
.++.++....++.+.+... ...+-++ .=|.|+.|. .+....+++.+.+ ..+++..+.+--|. .-...+
T Consensus 235 dP~~EV~va~~IL~slglr--~~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADi 310 (346)
T TIGR00612 235 DPTHEVPVAFEILQSLGLR--ARGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADI 310 (346)
T ss_pred CcHHHHHHHHHHHHHcCCC--cCCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCe
Confidence 3444443333444444332 3445554 234444443 2334455555544 34777776664331 223457
Q ss_pred CCccc-C-eEEEeeCCeEEEEEe
Q 033073 85 EIKAM-P-TFILMKEGALVDKLV 105 (128)
Q Consensus 85 ~v~~~-P-t~~~~~~g~~~~~~~ 105 (128)
|+.+- + ..++|++|+++.+..
T Consensus 311 GIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 311 GISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred eeecCCCCceEEEECCEEeEecC
Confidence 77654 3 588889999887754
No 317
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=64.64 E-value=19 Score=18.86 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=26.9
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCe
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
++|++|++..-.++. .++.|-.++++... .-....+|++.. +|.
T Consensus 14 s~sp~~~~v~~~L~~-----~~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~ 57 (72)
T cd03054 14 SLSPECLKVETYLRM-----AGIPYEVVFSSNPW----RSPTGKLPFLEL--NGE 57 (72)
T ss_pred CCCHHHHHHHHHHHh-----CCCceEEEecCCcc----cCCCcccCEEEE--CCE
Confidence 489999998888776 34444444444321 123457998864 454
No 318
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=64.35 E-value=26 Score=22.90 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=28.6
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc--cchhHHHhcCCcccCeEEEeeCCe
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD--EVKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
++...||+|+++.-.+.... +.|-.+++. ......+......+|+++. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~g-----l~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN-----IPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC-----CCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 45677999998777666543 333333332 2222223334578998753 3553
No 319
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=62.55 E-value=22 Score=19.81 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=24.2
Q ss_pred cCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 89 MPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 89 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
-.++.+|..|+++-. |. +.+++...+++...-
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~~ 81 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKILPI 81 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 457888999998765 66 888888887776543
No 320
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=20 Score=23.39 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred cCCCcEEEEEe--CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEccc
Q 033073 33 NQGCPVVVHFT--AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDE 76 (128)
Q Consensus 33 ~~~~~~vv~f~--~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~ 76 (128)
+.+..+.|.|. ++..|.|......+..++-+| ++++.+.+++|+
T Consensus 29 ~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 29 YLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred hcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 35677888888 457899999999999999998 689999888864
No 321
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.16 E-value=16 Score=23.47 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=21.3
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcC
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQ 65 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~ 65 (128)
+|+-.-||+|....+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4556789999999999999998883
No 322
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=60.83 E-value=24 Score=18.69 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=34.0
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc----chhHHHhcCCcccCeEEEeeCCe
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE----VKVVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.++.+.++.|+++.-.++...-. +....++... .+.+........+|++.. +|.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 56678899998887766664433 3444555432 235556667789999863 554
No 323
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=60.78 E-value=60 Score=23.31 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=58.4
Q ss_pred ceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhH-HhhHHH-HHHHHHcCCeEEEEEEcccchhHHHhcC--Cccc
Q 033073 14 RVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSV-AMNHFF-EELASTYQDILFLSVDVDEVKVVASKME--IKAM 89 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~-~~~~~l-~~l~~~~~~~~~~~v~~~~~~~~~~~~~--v~~~ 89 (128)
-|-+| +-++.+++.. .|.|.+|+|+.+..-... .+...+ ++|..+-..+.++..|...-..-..-+| -...
T Consensus 211 LVREi-TFeN~EELtE----EGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL 285 (375)
T KOG0912|consen 211 LVREI-TFENAEELTE----EGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL 285 (375)
T ss_pred hhhhh-hhccHHHHhh----cCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence 34455 7777777766 899999999988765543 333333 4444433458888888875443333333 2446
Q ss_pred CeEEEee-CCe-EEEEEeCC-CHHHHHHHHHHHH
Q 033073 90 PTFILMK-EGA-LVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 90 Pt~~~~~-~g~-~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
|.+.+-. ..- ....+... .+-.|.+|+..+-
T Consensus 286 PviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 286 PVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLH 319 (375)
T ss_pred cEEEeeccceeeecCchhhhcCccHHHHHHHHHh
Confidence 6555431 111 11112222 4567888887654
No 324
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=57.90 E-value=49 Score=21.94 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=28.1
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
...-.+.+|....|+.|..+...+.. ....+.++-|+..
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs~ 145 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGSQ 145 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecCC
Confidence 45666777888999999988776632 2357888888843
No 325
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=57.65 E-value=18 Score=26.07 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=41.6
Q ss_pred eEEEEEEcccchhHHHhcCCcccCeEEEe--eCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 67 ILFLSVDVDEVKVVASKMEIKAMPTFILM--KEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 67 ~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
...+..|......+...|.+..+|.+.++ .-|+.+.+..|. .++.|..-+++++..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 34445555666788889999999987777 368888888777 777777777777654
No 326
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.77 E-value=16 Score=23.18 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=23.1
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcC-CeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQ-DILFL 70 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~ 70 (128)
+|+-.-||+|-...+.++++...++ .+.+.
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~ 33 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYR 33 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEe
Confidence 4556789999999999999988873 34433
No 327
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.65 E-value=42 Score=22.75 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEe-C----CCChhhHHhhHHHHHHHHHc--CCeEEEEEEc
Q 033073 21 EKSWDLFITKATNQGCPVVVHFT-A----AWCMPSVAMNHFFEELASTY--QDILFLSVDV 74 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~vv~f~-~----~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~ 74 (128)
+..+.++... +++.+|-.|. . ..|+.|..+...+.-..... .++.++.|.-
T Consensus 63 ~~sLadLF~g---rsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR 120 (247)
T COG4312 63 KKSLADLFGG---RSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR 120 (247)
T ss_pred chhHHHHhCC---CceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec
Confidence 4455555552 4556655553 3 36999999988885544433 5788888765
No 328
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=53.28 E-value=99 Score=23.54 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCC-ChhhHHhhHHHHHHHHHcC--CeEEEEEE-cccchhHHHhcCCcccC--eEEEe
Q 033073 24 WDLFITKATNQGCPVVVHFTAAW-CMPSVAMNHFFEELASTYQ--DILFLSVD-VDEVKVVASKMEIKAMP--TFILM 95 (128)
Q Consensus 24 ~~~~~~~~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~~--~~~~~~v~-~~~~~~~~~~~~v~~~P--t~~~~ 95 (128)
+.+.....+..-..+||+|+.+. ...=......+.++..+++ ++.++.+. ..-....+-+.++...| +++++
T Consensus 270 ~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 270 FEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred HHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 44443333224457888888743 3333345667788888874 56777776 33334444455555444 34444
No 329
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=51.68 E-value=20 Score=19.44 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHH---hcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHH
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVAS---KMEIKAMPTFILMKEGALVDKLVGANPQAIRKMING 118 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 118 (128)
+||++|++..-.+....-.| .+..++......... .-....+|+++. .+|..+. +...+.++|.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 58999999888777644333 444444433222221 123568898854 2254321 44445555543
No 330
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=50.11 E-value=27 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.2
Q ss_pred cccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCC
Q 033073 9 QLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAA 45 (128)
Q Consensus 9 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~ 45 (128)
+.+..+...+ +.+++-+++.++ ...|++|+|=-.
T Consensus 29 S~S~GNPT~l-sG~elV~lIk~a--~~DPV~VMfDD~ 62 (180)
T PF14097_consen 29 SQSAGNPTPL-SGEELVELIKQA--PHDPVLVMFDDK 62 (180)
T ss_pred eccCCCCCcC-CHHHHHHHHHhC--CCCCEEEEEeCC
Confidence 3455666777 888888988887 789999999644
No 331
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=49.86 E-value=48 Score=23.64 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~ 77 (128)
....+|.+ +|+.|++....|+.+...-..+.++-||++..
T Consensus 76 ~~~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 76 SGSMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCCEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 34466655 78899999999999986545789999999854
No 332
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=49.31 E-value=66 Score=20.38 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-C-CeEEEEEEc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY-Q-DILFLSVDV 74 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~-~~~~~~v~~ 74 (128)
.++-+.+.++++.++.|.-+.-.++.+++.| . ++.+-.++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 3467788888999999999999999999998 4 566666554
No 333
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=48.88 E-value=38 Score=17.46 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=27.0
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEE
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~ 94 (128)
++.+.|+.|.+..-.++...- .+....++.. ..+.+........+|++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 334556666665544444322 2344455542 2345555566789998863
No 334
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=48.11 E-value=35 Score=23.28 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCC
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEI 86 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v 86 (128)
.+++++ -+.+.++.++.+...++++........+..++.++-..+..+||+
T Consensus 220 ~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 220 RKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred cCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 566664 346778877777777777766543444455555555666666664
No 335
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.06 E-value=63 Score=21.31 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVD 73 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~ 73 (128)
+...+|...-.+.|--|+.....|.++..-. .++..+.|-
T Consensus 50 ~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 50 ERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred cCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4556666666789999999999988874433 455555543
No 336
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=47.18 E-value=28 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=20.7
Q ss_pred ccchhHHHhcCCcccCeEEEeeCCeEE
Q 033073 75 DEVKVVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 75 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
|....+.++|+++.+|+++. .+|+..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 45678999999999999986 566543
No 337
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=46.87 E-value=79 Score=21.43 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=39.5
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHH
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGF 119 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 119 (128)
.-||+|+++.-.+....- .+.+..+|.... +.+........+|+++. +|..+. ....+..+|.+.
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~-----ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKT-----DVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEee-----cHHHHHHHHHHH
Confidence 468999988877765221 346666776553 45555556678999874 453321 344455555544
No 338
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=46.61 E-value=82 Score=20.63 Aligned_cols=72 Identities=14% Similarity=0.303 Sum_probs=45.0
Q ss_pred hhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHh----cC-CcccCeEEEe-eCCeEEEEEeCC-CHHHHHHHHHHHH
Q 033073 49 PSVAMNHFFEELASTYQDILFLSVDVDEVKVVASK----ME-IKAMPTFILM-KEGALVDKLVGA-NPQAIRKMINGFI 120 (128)
Q Consensus 49 ~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~----~~-v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 120 (128)
.-..|...|+.+..-...++.+.|++.+...+.+. |. +...|...++ -||+......|. +...-.++-++++
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v~ 97 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKVL 97 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHHh
Confidence 34566677777777667788888888776554433 33 3456666666 488877766666 4444444545544
No 339
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=46.44 E-value=15 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=15.3
Q ss_pred EEEEeCCCChhhHHhh-HHHHH
Q 033073 39 VVHFTAAWCMPSVAMN-HFFEE 59 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~-~~l~~ 59 (128)
|-.||.+-||+|+.+. ..|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 5578899999999874 33443
No 340
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=45.87 E-value=35 Score=19.82 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=35.9
Q ss_pred EeCCCChhhHHhhHH-------HHHHHHHcCCeEEEEEEcccchhHHHhcCCc-ccCeEEEeeCCeEEEEEeCCCHHHHH
Q 033073 42 FTAAWCMPSVAMNHF-------FEELASTYQDILFLSVDVDEVKVVASKMEIK-AMPTFILMKEGALVDKLVGANPQAIR 113 (128)
Q Consensus 42 f~~~~C~~C~~~~~~-------l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~-~~Pt~~~~~~g~~~~~~~g~~~~~l~ 113 (128)
|....||.|..+..+ ..-....|.++..+ +|-+ ..-+++..++. .+|-.+. -...|.-++++.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~-~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPE-KSWVARWQRIDKFVPGIYA-------ISVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCc-hhHHHHHhCCCCCCCCeEE-------EEecCcCCHHHH
Confidence 778899999643322 22234444454333 3333 34677777775 2444433 334455555555
Q ss_pred HHHHH
Q 033073 114 KMING 118 (128)
Q Consensus 114 ~~i~~ 118 (128)
..++.
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 55543
No 341
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=44.88 E-value=78 Score=20.61 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=23.5
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
++++|+.|+++=. |. +.+++...+++++..
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHHHH
Confidence 6788899998765 77 888888888777654
No 342
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=44.34 E-value=80 Score=19.87 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEE
Q 033073 35 GCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSV 72 (128)
Q Consensus 35 ~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v 72 (128)
++.+.++.-.+-|.+|+ ..+..++++. +.+.++..
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 55566777789999999 6777777775 34444443
No 343
>PRK15113 glutathione S-transferase; Provisional
Probab=44.31 E-value=88 Score=20.37 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=35.0
Q ss_pred CcEEEEEeCC--CChhhHHhhHHHHHHHHHcCCeEEEEEEccc----chhHHHhcCCcccCeEEE
Q 033073 36 CPVVVHFTAA--WCMPSVAMNHFFEELASTYQDILFLSVDVDE----VKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 36 ~~~vv~f~~~--~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~~ 94 (128)
++.+..++.+ .|++|++..-.+.+..-. +.+..+|... .+.+........+|+++.
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 4445556654 699998877766664332 3555666532 245555566788999974
No 344
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=43.38 E-value=50 Score=23.37 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=16.0
Q ss_pred cEEEEEeCCCChhhHHhhHHH
Q 033073 37 PVVVHFTAAWCMPSVAMNHFF 57 (128)
Q Consensus 37 ~~vv~f~~~~C~~C~~~~~~l 57 (128)
.-++.|--..||+|-++...|
T Consensus 89 L~l~LyQyetCPFCcKVrAFL 109 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFL 109 (370)
T ss_pred ceEEEEeeccCchHHHHHHHH
Confidence 456666677999999887765
No 345
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=43.00 E-value=8.9 Score=23.80 Aligned_cols=12 Identities=8% Similarity=-0.056 Sum_probs=10.8
Q ss_pred CChhhHHhhHHH
Q 033073 46 WCMPSVAMNHFF 57 (128)
Q Consensus 46 ~C~~C~~~~~~l 57 (128)
.||+|++..|.|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 699999999877
No 346
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=42.90 E-value=31 Score=23.00 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=21.2
Q ss_pred ccchhHHHhcCCcccCeEEEe-eCCeEE
Q 033073 75 DEVKVVASKMEIKAMPTFILM-KEGALV 101 (128)
Q Consensus 75 ~~~~~~~~~~~v~~~Pt~~~~-~~g~~~ 101 (128)
|....+.++|+++.+|+++.- .+|+..
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 455679999999999999863 677654
No 347
>PHA02151 hypothetical protein
Probab=42.62 E-value=18 Score=23.02 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=12.4
Q ss_pred CCCcEEEEEeCCCCh
Q 033073 34 QGCPVVVHFTAAWCM 48 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~ 48 (128)
+...-.|+||..||.
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 556778999999995
No 348
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=42.61 E-value=8.8 Score=23.78 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=10.8
Q ss_pred CChhhHHhhHHH
Q 033073 46 WCMPSVAMNHFF 57 (128)
Q Consensus 46 ~C~~C~~~~~~l 57 (128)
.||+|++..|.|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 699999999877
No 349
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=42.56 E-value=66 Score=18.45 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=35.6
Q ss_pred CChhhHHhh---HHH----HHHHHHcC--CeEEEEEEcccch------hHHHhc--CCcccCeEEEeeCCeEEEEEeCC-
Q 033073 46 WCMPSVAMN---HFF----EELASTYQ--DILFLSVDVDEVK------VVASKM--EIKAMPTFILMKEGALVDKLVGA- 107 (128)
Q Consensus 46 ~C~~C~~~~---~~l----~~l~~~~~--~~~~~~v~~~~~~------~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~- 107 (128)
-|+.|..+- .++ ..|.++|+ .+.|-.||+...+ .++++. .---.|-+++ +|+++.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 588886443 233 34566784 4888899997543 333332 2345787776 8888876 55
Q ss_pred CHHHHHHHH
Q 033073 108 NPQAIRKMI 116 (128)
Q Consensus 108 ~~~~l~~~i 116 (128)
....+-+++
T Consensus 84 ~LK~I~~~~ 92 (93)
T PF07315_consen 84 QLKDIYEEM 92 (93)
T ss_dssp -HHHHHHHH
T ss_pred cHHHHHHhh
Confidence 555555444
No 350
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=42.20 E-value=55 Score=17.44 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=30.2
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEE
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~ 94 (128)
+|...++.|++..-.++...-.+ ....++.. ..+.+........+|++..
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLPY---EIHPVDISKGEQKKPEFLKINPNGRIPAIVD 57 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCCc---EEEEecCcCCcccCHHHHHhCcCCCCCEEEe
Confidence 44344599988888777654433 44445532 2245555556778999864
No 351
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=41.81 E-value=24 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.4
Q ss_pred CCCcEEEEEeCC---CChhhHHhhHH
Q 033073 34 QGCPVVVHFTAA---WCMPSVAMNHF 56 (128)
Q Consensus 34 ~~~~~vv~f~~~---~C~~C~~~~~~ 56 (128)
.....||-|-.| ||..|.....+
T Consensus 39 ~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 39 DQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred ccceEEEEEecccchhhccHHHhhhc
Confidence 567889999887 99999876644
No 352
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=41.56 E-value=89 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=22.3
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
++++|..|+++-. |. +.+++...++++..
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5777788888765 77 88888888877654
No 353
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=41.50 E-value=53 Score=17.03 Aligned_cols=50 Identities=6% Similarity=0.060 Sum_probs=27.6
Q ss_pred EeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc--hhHHHhcCCcccCeEEE
Q 033073 42 FTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV--KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 94 (128)
++.+.|+.|++..-.++...-.+ ....++.... ..+........+|+++.
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 44567888887776666644333 3333443221 12333345678998863
No 354
>PLN02378 glutathione S-transferase DHAR1
Probab=41.42 E-value=88 Score=20.45 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=29.9
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCCcccCeEEE
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v~~~Pt~~~ 94 (128)
.+||+|+++.-.++...-. ..+..+|.... +.+..-.....+|++..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~~ 65 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLKI 65 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEEE
Confidence 3599999988777655433 34555555432 34555556678998853
No 355
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=15 Score=24.02 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-----hhHHHhcCCcccCeEEEeeCCeEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-----KVVASKMEIKAMPTFILMKEGALV 101 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 101 (128)
..++++--+|.+.|.+=.+..-.|+.+ +..+.-||.-.. .++.+--....+|++++ +|..+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 457887777777787643333223222 233344444322 12222234678999987 66544
No 356
>PRK11752 putative S-transferase; Provisional
Probab=40.85 E-value=98 Score=21.15 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=34.6
Q ss_pred EeCCCChhhHHhhHHHHHH-HHHcC--CeEEEEEEccc----chhHHHhcCCcccCeEEE
Q 033073 42 FTAAWCMPSVAMNHFFEEL-ASTYQ--DILFLSVDVDE----VKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 42 f~~~~C~~C~~~~~~l~~l-~~~~~--~~~~~~v~~~~----~~~~~~~~~v~~~Pt~~~ 94 (128)
+|...++.|+++.-.++++ +...+ .+.++.+|... .+.+........+|+++.
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 3345699999999888885 32223 34556666543 345666566788999975
No 357
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=39.77 E-value=40 Score=18.62 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=25.2
Q ss_pred CeEEEEEEcccchhHHHhcC----CcccCeEEEeeCCeEE
Q 033073 66 DILFLSVDVDEVKVVASKME----IKAMPTFILMKEGALV 101 (128)
Q Consensus 66 ~~~~~~v~~~~~~~~~~~~~----v~~~Pt~~~~~~g~~~ 101 (128)
+-..+.|.+..+++++.++. -+++|.++ +|+.+
T Consensus 25 ~~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l---dgk~~ 61 (80)
T PF07351_consen 25 GEDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL---DGKPS 61 (80)
T ss_pred CCCeEEeecCCChhheeEecccccCCccceEE---CCcee
Confidence 46678888899999998874 47899887 66543
No 358
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=1e+02 Score=19.64 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCCcEEEEEe-CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc
Q 033073 34 QGCPVVVHFT-AAWCMPSVAMNHFFEELASTYQDILFLSVDVD 75 (128)
Q Consensus 34 ~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~ 75 (128)
.++..+|..+ +=.-|.|..--..+++.+.++.++.++.|+.|
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 5565555555 66789999988999999998888888888876
No 359
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=39.16 E-value=1e+02 Score=22.10 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHc--CCeEEEEEEc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTY--QDILFLSVDV 74 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~ 74 (128)
.++|+++.|-...-+.++.+...+++.+++. +++-++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 5788877777766788899999999998886 5676766543
No 360
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=38.92 E-value=48 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=9.5
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAW 46 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~ 46 (128)
+..++.+.+.. .++|++|.|.+-|
T Consensus 120 s~~~lr~~l~~---~~~P~LllFGTGw 143 (185)
T PF09936_consen 120 SYAELRRMLEE---EDRPVLLLFGTGW 143 (185)
T ss_dssp -HHHHHHHHHH-----S-EEEEE--TT
T ss_pred CHHHHHHHHhc---cCCeEEEEecCCC
Confidence 44444554432 4566666666665
No 361
>PRK13818 ribosome-binding factor A; Provisional
Probab=38.67 E-value=89 Score=18.82 Aligned_cols=39 Identities=10% Similarity=0.309 Sum_probs=24.4
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhhhh
Q 033073 79 VVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~ 124 (128)
.++++..++.+|.+.|+.|. +. ....+.+.|.+.....+
T Consensus 77 ~la~~l~lR~~P~L~F~~D~-------s~e~~~~I~~Ll~~i~~~~~ 116 (121)
T PRK13818 77 LLGQTLTVYKVPELIFKRDN-------SVAYGSKIDRLIAEVKKQDQ 116 (121)
T ss_pred HHHhhCCCeECCEEEEEeCC-------ChHHHHHHHHHHHHHHhhhh
Confidence 45667889999999998653 22 33445555555544333
No 362
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=38.58 E-value=1e+02 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=21.9
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
.++.+|..|+++-. |. +.+++...+++...
T Consensus 48 ~t~lIf~sGKivit--Gaks~~~~~~a~~~~~~ 78 (174)
T cd00652 48 TTALIFSSGKMVIT--GAKSEEDAKLAARKYAR 78 (174)
T ss_pred EEEEEECCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 47888999998866 66 77777776666543
No 363
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=38.24 E-value=53 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.4
Q ss_pred hhHHHhcCCcccCeEEE
Q 033073 78 KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 78 ~~~~~~~~v~~~Pt~~~ 94 (128)
.++++++++..+|.+|-
T Consensus 121 ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHhCCCcccEEee
Confidence 37899999999998774
No 364
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=38.21 E-value=73 Score=17.68 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHhhhh
Q 033073 55 HFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124 (128)
Q Consensus 55 ~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~ 124 (128)
..++.|.+ .+++.++..++-..=..+.+ -| |.+ -||+.+. +.++++|.+.|.+.+...+
T Consensus 18 ~~~~~Le~-~p~~~Vie~gCl~~Cg~C~~-----~p-FAl-VnG~~V~---A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 18 QVYEKLEK-DPDIDVIEYGCLSYCGPCAK-----KP-FAL-VNGEIVA---AETAEELLEKIKEKIEENP 76 (78)
T ss_pred HHHHHHhc-CCCccEEEcChhhhCcCCCC-----Cc-cEE-ECCEEEe---cCCHHHHHHHHHHHHhccc
Confidence 34566654 48888888776544222221 22 222 3676544 6699999999999887654
No 365
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.06 E-value=1.2e+02 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.4
Q ss_pred HHHHHHHcCCeEEEEEEcccc
Q 033073 57 FEELASTYQDILFLSVDVDEV 77 (128)
Q Consensus 57 l~~l~~~~~~~~~~~v~~~~~ 77 (128)
-++|.+.||+..++++|.|..
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt 517 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTT 517 (730)
T ss_pred HHHHHHHCCCCcEEEEccccc
Confidence 355666679999999999864
No 366
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=37.57 E-value=69 Score=20.10 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc
Q 033073 23 SWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY 64 (128)
Q Consensus 23 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~ 64 (128)
.+.+.+. +.+|-+|...+ ++..|+.+...++++..+.
T Consensus 54 ~l~~~i~----~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~ 90 (150)
T PF14639_consen 54 RLKKFIE----KHKPDVIAVGG-NSRESRKLYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHH----HH--SEEEE---SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----HcCCeEEEEcC-CChhHHHHHHHHHHHHHHh
Confidence 3445666 34555555544 7899999999888887765
No 367
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=37.30 E-value=49 Score=19.52 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEE
Q 033073 56 FFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 56 ~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 94 (128)
.+++|.+.-+++.+.-++.| ++++++++..+|.++-
T Consensus 64 ~l~~Lr~lapgl~l~P~sgd---dLa~rL~l~hYPvLit 99 (105)
T TIGR03765 64 ALQRLRALAPGLPLLPVSGD---DLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHcCCCcccCCCHH---HHHHHhCCCcccEEEe
Confidence 34444444455555555544 7899999999998774
No 368
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=37.15 E-value=1.4e+02 Score=20.57 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=26.0
Q ss_pred hHHHhcCCcccCe---EEEeeCCeEEEEEeCC-CHHHHHHHHHH
Q 033073 79 VVASKMEIKAMPT---FILMKEGALVDKLVGA-NPQAIRKMING 118 (128)
Q Consensus 79 ~~~~~~~v~~~Pt---~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 118 (128)
.+.+.+++...-+ +++..+|++.....|. +++++..+...
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k~ 248 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWKC 248 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHHH
Confidence 4455666655554 2333688988887788 88888766543
No 369
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=36.92 E-value=1.8e+02 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=21.2
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 73 (128)
+|-|++-.=+.-....|.++++.+.+|++.+...-
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 45555555566666667777777766665555443
No 370
>PRK00394 transcription factor; Reviewed
Probab=36.64 E-value=1.2e+02 Score=19.71 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
++++|..|+++-. |. +.+++...+++...
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5777788887765 77 88888888777654
No 371
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.46 E-value=1.2e+02 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
++.+|..|+++-. |. +.+++...+++.+.
T Consensus 49 t~lIF~SGKiviT--Gaks~e~a~~a~~~i~~ 78 (174)
T cd04516 49 TALIFSSGKMVCT--GAKSEDDSKLAARKYAR 78 (174)
T ss_pred EEEEECCCeEEEE--ecCCHHHHHHHHHHHHH
Confidence 6788899998765 66 77777766665543
No 372
>PLN00062 TATA-box-binding protein; Provisional
Probab=36.03 E-value=1.2e+02 Score=19.65 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 91 TFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
++++|..|+++-. |. +.+++...++....
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIVIT--GAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 4667788887755 66 78888888776654
No 373
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.38 E-value=78 Score=24.10 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.0
Q ss_pred hHHHHHHHHHcCCeEEEEEEccc
Q 033073 54 NHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 54 ~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
....+.+.+.|++..+.++|.|.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEeccc
Confidence 33446666777899999998875
No 374
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.23 E-value=1.2e+02 Score=19.73 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=23.7
Q ss_pred EEEEeCCCChhhHHhhHHHHHHHHHcC-CeEEEEE
Q 033073 39 VVHFTAAWCMPSVAMNHFFEELASTYQ-DILFLSV 72 (128)
Q Consensus 39 vv~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~v 72 (128)
|=+|+-.-||+|..-...++++...++ .+.+.-+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 445566789999999999988887652 3444343
No 375
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.52 E-value=33 Score=22.46 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEE
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFI 93 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 93 (128)
+.||+|.+.+-.+--. + -.+....++.|+...-.+-.|-+.+|-++
T Consensus 7 dHCPfcvrarmi~Gl~-n--ipve~~vL~nDDe~Tp~rmiG~KqVPiL~ 52 (215)
T COG2999 7 DHCPFCVRARMIFGLK-N--IPVELHVLLNDDEETPIRMIGQKQVPILQ 52 (215)
T ss_pred ccChHHHHHHHHhhcc-C--CChhhheeccCcccChhhhhcccccceEE
Confidence 6899998876554221 1 13455566677776666777888888665
No 376
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=34.46 E-value=73 Score=17.78 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=18.1
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEE
Q 033073 79 VVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
..+..+++...+++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 456678886667888889998874
No 377
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=34.27 E-value=79 Score=17.66 Aligned_cols=25 Identities=8% Similarity=0.267 Sum_probs=20.0
Q ss_pred ccceeecCChhhHHHHHHHHhcCCCcEEE
Q 033073 12 KSRVARVNSEKSWDLFITKATNQGCPVVV 40 (128)
Q Consensus 12 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv 40 (128)
.+.+.+|++.+++.+++. ..+|.+=
T Consensus 50 ~gDLLPInNDdNf~kAls----sa~plLR 74 (80)
T cd06403 50 HGDLLPINNDDNFLKALS----SANPLLR 74 (80)
T ss_pred CCCEecccCcHHHHHHHH----cCCCceE
Confidence 678999999999999999 4455543
No 378
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.24 E-value=96 Score=17.89 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=27.6
Q ss_pred hhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEE
Q 033073 22 KSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVD 73 (128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~ 73 (128)
+++.+.+. ..++-+|.|...+.+....+....+.+.+..+++.++.-.
T Consensus 41 ~~l~~~~~----~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 41 EELVEALR----AERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHHH----HTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHh----cCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 44445444 3455556666666666666666666655555665555443
No 379
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=34.20 E-value=1.1e+02 Score=18.35 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCCcEEEEEeC-CCChhhHHhhHHHHHHHHHc----------CCeEEEE-EEcccchhHHHhcCC-cccCeEEEee---C
Q 033073 34 QGCPVVVHFTA-AWCMPSVAMNHFFEELASTY----------QDILFLS-VDVDEVKVVASKMEI-KAMPTFILMK---E 97 (128)
Q Consensus 34 ~~~~~vv~f~~-~~C~~C~~~~~~l~~l~~~~----------~~~~~~~-v~~~~~~~~~~~~~v-~~~Pt~~~~~---~ 97 (128)
...|.+|+|.- ..-+.-+...+.++.++++. +-+.|.. .+-+....+....+. ...|-++++. .
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 56777777773 33345666666666665543 1133332 332223333333454 4578777773 3
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHH
Q 033073 98 GALVDKLVGANPQAIRKMINGFI 120 (128)
Q Consensus 98 g~~~~~~~g~~~~~l~~~i~~~~ 120 (128)
++.+-.....+.+.+.+|+..++
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 44333333348899999998875
No 380
>PLN02473 glutathione S-transferase
Probab=33.93 E-value=1.3e+02 Score=19.39 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=34.0
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEEeeCCeE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
.++.+.|+.|++..-.+..+.- ...++.+|.. ..++.........+|+++. +|..
T Consensus 5 Ly~~~~s~~~~rv~~~L~e~gi---~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~ 63 (214)
T PLN02473 5 VYGQIKAANPQRVLLCFLEKGI---EFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLK 63 (214)
T ss_pred EecCCCCCchHHHHHHHHHcCC---CceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEE
Confidence 4455668888887766665433 2355666654 2345555566789999863 5543
No 381
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.21 E-value=67 Score=20.39 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCCCChh
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAAWCMP 49 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~ 49 (128)
+-+.+...+.+ .++|+++.|.+-|--+
T Consensus 121 sy~~lr~~I~e---~dkp~LilfGTGwGlp 147 (190)
T COG4752 121 SYSWLRNEIQE---RDKPWLILFGTGWGLP 147 (190)
T ss_pred cHHHHHHHHhh---cCCcEEEEecCCCCCC
Confidence 34445555554 7899999999988544
No 382
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=33.15 E-value=79 Score=16.55 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=29.2
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccch-hHHHhcCCcccCeEEEeeCCe
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVK-VVASKMEIKAMPTFILMKEGA 99 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~ 99 (128)
.+|.+-|+.|++..-.+....-. +....++.+... .+...-....+|++.. +|.
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~ 58 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEWQESLKPKMLFGQLPCFKD--GDL 58 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHhhhhhhccCCCCCCCEEEE--CCE
Confidence 44556788888777666665333 344444443222 2222233567899863 554
No 383
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=33.02 E-value=50 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHcCCeEEEEE---EcccchhHHHhcCCcccCeEEEeeCCeE
Q 033073 58 EELASTYQDILFLSV---DVDEVKVVASKMEIKAMPTFILMKEGAL 100 (128)
Q Consensus 58 ~~l~~~~~~~~~~~v---~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 100 (128)
..+..+|.+..|+.= |.+---.++..-.=..+|.++++++|-.
T Consensus 123 K~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL~ 168 (172)
T PTZ00151 123 KHILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGLK 168 (172)
T ss_pred HHHHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccce
Confidence 344445567777742 2221112221112346999999999854
No 384
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.96 E-value=60 Score=18.20 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=18.1
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEE
Q 033073 79 VVASKMEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~ 102 (128)
..+..+++...++++++.+|.+++
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 345667887677888889998884
No 385
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=32.64 E-value=97 Score=21.34 Aligned_cols=47 Identities=15% Similarity=0.001 Sum_probs=30.5
Q ss_pred CCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc-hhHHHhcCCcccCeEEE
Q 033073 45 AWCMPSVAMNHFFEELASTYQDILFLSVDVDEV-KVVASKMEIKAMPTFIL 94 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~-~~~~~~~~v~~~Pt~~~ 94 (128)
.+||+|++..-.+++..-. +.+..+|.... +.+...-....+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 3599999988888665433 35556666443 33444445678999975
No 386
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=32.63 E-value=58 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=30.9
Q ss_pred HHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHH
Q 033073 81 ASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGF 119 (128)
Q Consensus 81 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 119 (128)
..+|+.+++=||++-.+|.+..+..|.+...+-+.|..+
T Consensus 224 Pa~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~F 262 (271)
T PF11453_consen 224 PAEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITSF 262 (271)
T ss_pred ehhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhcc
Confidence 457899999999999999999998888666665555543
No 387
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=31.97 E-value=1.4e+02 Score=19.07 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=24.0
Q ss_pred eCCeEEEEEeCCCHHHHHHHHHHHHhhhhccC
Q 033073 96 KEGALVDKLVGANPQAIRKMINGFIHSVRLHK 127 (128)
Q Consensus 96 ~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~~ 127 (128)
..|+.+.-..|.+.+.+.+.+++++...+.+.
T Consensus 122 ~~g~~vQIIiG~~v~~i~~~i~~~l~~~~~~~ 153 (161)
T PRK09702 122 RSGDAIQVIIGLHVSQLREQLDSLINSHQSAE 153 (161)
T ss_pred EeCCeEEEEECCCHHHHHHHHHHHHccccccc
Confidence 34566777789999999999998887655443
No 388
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=31.51 E-value=66 Score=16.96 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=24.8
Q ss_pred CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCe
Q 033073 44 AAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPT 91 (128)
Q Consensus 44 ~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt 91 (128)
.+.||.|.... +.+++.++ ++.+|-+ ...++++.++ ..|-
T Consensus 15 ~~~CP~Cgs~~-----~T~~W~G~-viI~dPe-~S~IAk~l~i-~~pG 54 (61)
T PRK08351 15 EDRCPVCGSRD-----LSDEWFDL-VIIIDVE-NSRIAKKLGA-KVPG 54 (61)
T ss_pred CCcCCCCcCCc-----cccccccE-EEEeCCc-HhHHHHHhCC-CCCC
Confidence 45799998743 45555553 3355555 4488898887 4443
No 389
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.01 E-value=9.8 Score=26.26 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=7.0
Q ss_pred CChhhHHhhH
Q 033073 46 WCMPSVAMNH 55 (128)
Q Consensus 46 ~C~~C~~~~~ 55 (128)
|||.|+...|
T Consensus 257 ~Cp~CQ~~~~ 266 (269)
T PRK14811 257 FCPQCQPLRP 266 (269)
T ss_pred ECCCCcCCCC
Confidence 7888876554
No 390
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=30.68 E-value=1.5e+02 Score=19.08 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=21.7
Q ss_pred CeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033073 90 PTFILMKEGALVDKLVGA-NPQAIRKMINGFIH 121 (128)
Q Consensus 90 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 121 (128)
.++.+|..|+++-. |. +.+++...++++..
T Consensus 48 ~t~lIF~sGKiviT--Gaks~~~~~~a~~~~~~ 78 (174)
T cd04517 48 ATASVWSSGKITIT--GATSEEEAKQAARRAAR 78 (174)
T ss_pred EEEEEECCCeEEEE--ccCCHHHHHHHHHHHHH
Confidence 37888899998765 77 77777777665543
No 391
>PRK13669 hypothetical protein; Provisional
Probab=30.48 E-value=1e+02 Score=17.12 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHhhh
Q 033073 57 FEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSV 123 (128)
Q Consensus 57 l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 123 (128)
++.+ +++|++.++..++-..-..+.+ -|- .+-||+.+. +.++++|.+.|.+.+...
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C~~-----~~F--AlVng~~V~---a~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGICSE-----GLF--ALVNGEVVE---GETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCccc-----Cce--EEECCeEee---cCCHHHHHHHHHHHHhhc
Confidence 4444 4568999888877654333221 222 223776544 669999999999888754
No 392
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.18 E-value=1.8e+02 Score=19.80 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=33.5
Q ss_pred hhhHHhhHHHHHHHHHcCC-eEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEE
Q 033073 48 MPSVAMNHFFEELASTYQD-ILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDK 103 (128)
Q Consensus 48 ~~C~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 103 (128)
-+|..++..++.+++++.+ +.++--|+. ++..|. -.++.+++|+++..
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDIN----fAS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDIN----FASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEeccc----HHHhhh----hheeeecCCEEEec
Confidence 6799999999999999955 444444443 333332 24777899998876
No 393
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.06 E-value=13 Score=25.91 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=3.9
Q ss_pred CChhhH
Q 033073 46 WCMPSV 51 (128)
Q Consensus 46 ~C~~C~ 51 (128)
|||.|+
T Consensus 267 ~CP~CQ 272 (273)
T COG0266 267 YCPVCQ 272 (273)
T ss_pred eCCCCC
Confidence 666665
No 394
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=1.5e+02 Score=20.09 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=40.8
Q ss_pred CCCcEEEEEe----CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcC-CcccCeE-EEeeCCeEEE
Q 033073 34 QGCPVVVHFT----AAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKME-IKAMPTF-ILMKEGALVD 102 (128)
Q Consensus 34 ~~~~~vv~f~----~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~ 102 (128)
+.++++|+-- .|.|+..+++..+|+.. ++.|...|+-.+..+.+-.. ...+||| .+|-+|..+.
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 3455555443 35788888777777653 56688888888877766543 4566764 3334886554
No 395
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.64 E-value=1.6e+02 Score=22.41 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
-+||++|..-+.. |+.......-++|.++| ++.++.+|+..
T Consensus 179 igKPFvillNs~~-P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 179 IGKPFVILLNSTK-PYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred hCCCEEEEEeCCC-CCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 6888888776543 33334444446666777 77888888864
No 396
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.45 E-value=50 Score=22.24 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=21.2
Q ss_pred CCCcEEEEEeCCCChhhHHhhH-HHHHHHHH
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNH-FFEELAST 63 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~-~l~~l~~~ 63 (128)
.++..|-.||..-||+|+.+.. .|-.+...
T Consensus 38 ~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~ 68 (220)
T KOG3160|consen 38 APKVNITLYYEALCPDCSKFIRNQLYPFFDN 68 (220)
T ss_pred CCeeEEEEEEEecCccHHHHHHHHHHHHHhh
Confidence 4477788888999999998873 34444333
No 397
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=27.46 E-value=60 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCcEEEEEeCC----CChhhHHhhHHHHHHH
Q 033073 34 QGCPVVVHFTAA----WCMPSVAMNHFFEELA 61 (128)
Q Consensus 34 ~~~~~vv~f~~~----~C~~C~~~~~~l~~l~ 61 (128)
.++..+..||.+ ||..|-.-...+..|.
T Consensus 56 s~~~~~~AFWn~~e~~wCEdCdddLQ~yhsli 87 (120)
T PF06279_consen 56 SKKNLMTAFWNECEQRWCEDCDDDLQQYHSLI 87 (120)
T ss_pred eccccEEEeccccchhhhhcchHHHHHHhhee
Confidence 467788899964 9999987776665543
No 398
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.38 E-value=1.5e+02 Score=19.11 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=33.3
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc---cchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD---EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~---~~~~~~~~~~v~~~Pt~~~ 94 (128)
.++.+.++.|.++.=.+.++.- ...+..++.. ..+.+........+|+++.
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g~---~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~ 56 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKGL---PYEIVLVDLDAEQKPPDFLALNPLGKVPALVD 56 (211)
T ss_pred eecCCCCcchHHHHHHHHHcCC---CceEEEeCcccccCCHHHHhcCCCCCCCEEee
Confidence 4566666888887766655432 3455566655 3455666667889999874
No 399
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.15 E-value=2.3e+02 Score=19.96 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=41.4
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEc--ccc---hhHHHhcCCcccCeEEEe----------eCCeEEEEEe
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDV--DEV---KVVASKMEIKAMPTFILM----------KEGALVDKLV 105 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~--~~~---~~~~~~~~v~~~Pt~~~~----------~~g~~~~~~~ 105 (128)
.++-+.|..-+.......+|+.+. ++-++.=+. ... .+++...+ .|++.+= ++.+.+.-..
T Consensus 186 ~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~Ie~~~el~~~~l~~~~~VGiTA 261 (280)
T TIGR00216 186 PVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLIETAEELPEEWLKGVKVVGITA 261 (280)
T ss_pred CCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEECChHHCCHHHhCCCCEEEEEe
Confidence 345677777777777777777653 322222111 111 23344443 5666653 2234566667
Q ss_pred CC-CHHHHHHHHHHHH
Q 033073 106 GA-NPQAIRKMINGFI 120 (128)
Q Consensus 106 g~-~~~~l~~~i~~~~ 120 (128)
|. +++.+.+-+...+
T Consensus 262 GASTP~~li~eVi~~l 277 (280)
T TIGR00216 262 GASTPDWIIEEVIRKI 277 (280)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 88 7877766655554
No 400
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=27.07 E-value=1e+02 Score=16.00 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=35.6
Q ss_pred CChhhHHhhHHHHHHHHHcCCeEEEEEE---cccchhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHH
Q 033073 46 WCMPSVAMNHFFEELASTYQDILFLSVD---VDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMIN 117 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~---~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 117 (128)
.||+|++..=.++...-.+ .+.++... ....+.+.+.-....+|+++. .+|+++. +...+..+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-EEEEEeeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHh
Confidence 5899998887777765543 23333110 112245666666788999987 3666332 4444555444
No 401
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=26.33 E-value=1.2e+02 Score=16.87 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=17.5
Q ss_pred hHHHhcCCc-ccCeEEEeeCCeEEE
Q 033073 79 VVASKMEIK-AMPTFILMKEGALVD 102 (128)
Q Consensus 79 ~~~~~~~v~-~~Pt~~~~~~g~~~~ 102 (128)
..+..+++. ..++++++.+|.+++
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 29 KTLDALVITSGLVTLVLEEDGTVVD 53 (78)
T ss_pred HHHHHhCCCCCCcEEEEeCCCCEEc
Confidence 446677874 467888889998884
No 402
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.43 E-value=1.2e+02 Score=23.75 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=31.5
Q ss_pred hHHHhcCCcccCeEEEeeCCeEEEEEeCC-CHHHHHHHHHHHHhh
Q 033073 79 VVASKMEIKAMPTFILMKEGALVDKLVGA-NPQAIRKMINGFIHS 122 (128)
Q Consensus 79 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 122 (128)
.+.. ++....|..+++++|......... +.+...+.|.+++..
T Consensus 228 ~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 228 PLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred cccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 4444 788899999999999877655444 666777777777654
No 403
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=25.29 E-value=1.3e+02 Score=16.69 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=26.6
Q ss_pred hhHHHhcCCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHhhhh
Q 033073 78 KVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSVR 124 (128)
Q Consensus 78 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~ 124 (128)
...+.++++.++ +.=..+|.+.-...| +.+.+..|++.+....|
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G-~~~~l~~f~~~l~~g~p 67 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG-EEEQLEEFIKWLKKGPP 67 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE-EHHHHHHHHHHHHHSST
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe-CHHHHHHHHHHHHhCCC
Confidence 456778888876 333357766555556 56667777776655443
No 404
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=25.14 E-value=1.1e+02 Score=15.79 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=30.7
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcc----cchhHHHhcCCcccCeEEE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVD----EVKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~----~~~~~~~~~~v~~~Pt~~~ 94 (128)
.++.+.++.|.+..-.++...-.| .+..++.. ..+.+.+......+|.+..
T Consensus 3 l~~~~~s~~~~~v~~~L~~~~l~~---~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~ 57 (73)
T cd03047 3 IWGRRSSINVQKVLWLLDELGLPY---ERIDAGGQFGGLDTPEFLAMNPNGRVPVLED 57 (73)
T ss_pred EEecCCCcchHHHHHHHHHcCCCC---EEEEeccccccccCHHHHhhCCCCCCCEEEE
Confidence 456677888888877776654333 33344432 1244555556778999853
No 405
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=24.99 E-value=17 Score=25.19 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=3.3
Q ss_pred CChhhH
Q 033073 46 WCMPSV 51 (128)
Q Consensus 46 ~C~~C~ 51 (128)
|||.|+
T Consensus 267 ~CP~CQ 272 (274)
T PRK01103 267 FCPRCQ 272 (274)
T ss_pred ECcCCC
Confidence 555554
No 406
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.85 E-value=1.3e+02 Score=20.72 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=48.0
Q ss_pred CcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccc---hhHHHhcCCcccCeEEEeeCCeEEEEEe-CC-CHH
Q 033073 36 CPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEV---KVVASKMEIKAMPTFILMKEGALVDKLV-GA-NPQ 110 (128)
Q Consensus 36 ~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~-g~-~~~ 110 (128)
-.-++...+.+|+-...+...+.+.+. .++.++.|+.++- +.+.....-...+.++|+.+= .+. +- +..
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~--~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDL----sFe~~d~~yk 125 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYAD--QGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDL----SFEEGDTEYK 125 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhh--cCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCC----CCCCCcHHHH
Confidence 344556778899987777777766666 4688888877654 444555443333344444441 121 11 456
Q ss_pred HHHHHHHHHHhhh
Q 033073 111 AIRKMINGFIHSV 123 (128)
Q Consensus 111 ~l~~~i~~~~~~~ 123 (128)
.|+..++--+...
T Consensus 126 ~LKs~LeGgle~~ 138 (249)
T PF05673_consen 126 ALKSVLEGGLEAR 138 (249)
T ss_pred HHHHHhcCccccC
Confidence 6777776655443
No 407
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=23.68 E-value=28 Score=16.31 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=4.3
Q ss_pred CCChhhHHhh
Q 033073 45 AWCMPSVAMN 54 (128)
Q Consensus 45 ~~C~~C~~~~ 54 (128)
-||.+|....
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 3899998776
No 408
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.65 E-value=20 Score=24.77 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=3.3
Q ss_pred CChhhH
Q 033073 46 WCMPSV 51 (128)
Q Consensus 46 ~C~~C~ 51 (128)
|||.|+
T Consensus 266 ~CP~CQ 271 (272)
T PRK14810 266 YCPHCQ 271 (272)
T ss_pred ECcCCc
Confidence 555554
No 409
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=23.45 E-value=1.8e+02 Score=17.58 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCCh-hhHHhhHHHHHHHHHcCCeEEEEEEc
Q 033073 35 GCPVVVHFTAAWCM-PSVAMNHFFEELASTYQDILFLSVDV 74 (128)
Q Consensus 35 ~~~~vv~f~~~~C~-~C~~~~~~l~~l~~~~~~~~~~~v~~ 74 (128)
...++|.+|..+|| .|..+....+. ..|.+..|.++..
T Consensus 6 ~G~i~IeL~~~~~P~~~~nF~~l~~~--~~Y~~~~f~rv~~ 44 (146)
T cd00317 6 KGRIVIELYGDEAPKTVENFLSLARG--GFYDGTTFHRVIP 44 (146)
T ss_pred cCcEEEEEcCCCChHHHHHHHHHHhc--CCcCCCEEEEEeC
Confidence 46889999999998 45555544332 1347777777653
No 410
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.28 E-value=52 Score=20.35 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCcEEEEEeC------CCChhhHHhhHHHHHHHHHcCCeEEEEEEc
Q 033073 24 WDLFITKATNQGCPVVVHFTA------AWCMPSVAMNHFFEELASTYQDILFLSVDV 74 (128)
Q Consensus 24 ~~~~~~~~~~~~~~~vv~f~~------~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~ 74 (128)
+.+.+... ..+...|..++ +=|+.|+++...+ .. ++..++.++-
T Consensus 61 I~~ais~G--~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef---~~--~d~~ii~~~~ 110 (134)
T COG0295 61 IFKAISEG--KRKFDAVVVVADTGKPVSPCGACRQVLAEF---CG--DDTLIILLPK 110 (134)
T ss_pred HHHHHHcC--CCcEEEEEEEcCCCCCcCCcHHHHHHHHHh---cC--CCceEEEecC
Confidence 34444432 34444455543 3578887665433 22 3455555543
No 411
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=22.96 E-value=56 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.0
Q ss_pred CCCcEEEEEeCC---CChhhHHhh
Q 033073 34 QGCPVVVHFTAA---WCMPSVAMN 54 (128)
Q Consensus 34 ~~~~~vv~f~~~---~C~~C~~~~ 54 (128)
+.+..+|-|-.| ||..|....
T Consensus 27 k~~~~~VRf~~Pf~i~C~~C~~~I 50 (324)
T PF04502_consen 27 KQGILTVRFMMPFNIWCNTCGEYI 50 (324)
T ss_pred cCcceEEEEcCCccCcCCCCcccc
Confidence 467899999887 899997763
No 412
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=22.91 E-value=1.9e+02 Score=17.53 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=34.3
Q ss_pred CCChhhHHhhHHHHHHHH----Hc--CC--eEEEEEEcccchhHHHhcCCcccCeEEEeeCCeEEEE
Q 033073 45 AWCMPSVAMNHFFEELAS----TY--QD--ILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDK 103 (128)
Q Consensus 45 ~~C~~C~~~~~~l~~l~~----~~--~~--~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 103 (128)
..|..|......+.+..+ .+ -+ +.+-.+..+.. .++.++ -.-|++.+ +|+.+..
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~ 74 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIED 74 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhH
Confidence 489999877766654444 44 23 55556666654 666666 66778776 7766633
No 413
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=22.88 E-value=3e+02 Score=19.90 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=49.8
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeE
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTF 92 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 92 (128)
.++++.....+....-.++ +.++.+|+|.+..-|- +......-++++.-..|+...-+ .....-..+..|.+
T Consensus 133 ~aiI~pi~enQ~~fehlq~--Rhq~ffVf~Gtge~PL---~d~fidAASe~~~~a~FfSasee---VaPe~~~~kempaV 204 (468)
T KOG4277|consen 133 AAIIEPINENQIEFEHLQA--RHQPFFVFFGTGEGPL---FDAFIDAASEKFSVARFFSASEE---VAPEENDAKEMPAV 204 (468)
T ss_pred cceeeecChhHHHHHHHhh--ccCceEEEEeCCCCcH---HHHHHHHhhhheeeeeeeccccc---cCCcccchhhccce
Confidence 4555543444433322222 7899999998765542 11222222333322333332211 12222345778999
Q ss_pred EEeeCCeEEEEEeCCCHHHHHHHHHH
Q 033073 93 ILMKEGALVDKLVGANPQAIRKMING 118 (128)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~l~~~i~~ 118 (128)
.+|++....-.. ..+.+.|.+||.+
T Consensus 205 ~VFKDetf~i~d-e~dd~dLseWinR 229 (468)
T KOG4277|consen 205 AVFKDETFEIED-EGDDEDLSEWINR 229 (468)
T ss_pred EEEccceeEEEe-cCchhHHHHHHhH
Confidence 999886433222 2266778888875
No 414
>PHA02513 V1 structural protein V1; Reviewed
Probab=22.83 E-value=51 Score=19.66 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.0
Q ss_pred EEeCCCChhhHHhhHHHHHHHHHcCCeE
Q 033073 41 HFTAAWCMPSVAMNHFFEELASTYQDIL 68 (128)
Q Consensus 41 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~ 68 (128)
.||+.|.+.-..-...+-+++...|++.
T Consensus 33 if~qtwdgnii~sa~~fveva~~npklt 60 (135)
T PHA02513 33 IFYQTWDGNIISSARRFVEVAKANPKLT 60 (135)
T ss_pred HHHHhcCchHHHHHHHHHHHHhcCCccc
Confidence 5899999998888888888887765543
No 415
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=22.82 E-value=2e+02 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=14.4
Q ss_pred cCChhhHHHHHHHHhcCCCcEEEEEe
Q 033073 18 VNSEKSWDLFITKATNQGCPVVVHFT 43 (128)
Q Consensus 18 i~~~~~~~~~~~~~~~~~~~~vv~f~ 43 (128)
+.+.+++.+.+.++...+++.+|.+.
T Consensus 157 v~~~~el~~al~~al~~~gp~vIev~ 182 (193)
T cd03375 157 SGDIKQLKEIIKKAIQHKGFSFVEVL 182 (193)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 44555555555544435566666665
No 416
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=22.79 E-value=1.5e+02 Score=21.78 Aligned_cols=49 Identities=6% Similarity=0.289 Sum_probs=35.2
Q ss_pred CChhhHH-hhHHHHHHHHHc--CCeEEEEEEccc-----chhHHHhcCCcccCeEEE
Q 033073 46 WCMPSVA-MNHFFEELASTY--QDILFLSVDVDE-----VKVVASKMEIKAMPTFIL 94 (128)
Q Consensus 46 ~C~~C~~-~~~~l~~l~~~~--~~~~~~~v~~~~-----~~~~~~~~~v~~~Pt~~~ 94 (128)
.|++|.. ....+.++++++ .++.++....-+ .+.+-+++...++|-+.+
T Consensus 299 ~~~pn~e~r~k~i~~mvkE~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE~~iPvi~~ 355 (379)
T COG1775 299 CYSPNDEFRVKYISRMVKEYNVDGVVLYTLRFCKPYSVEYPELKRRLKEEGIPVIAI 355 (379)
T ss_pred cCCccHHHHHHHHHHHHHHcCCCeEeehhhhccCccccccHHHHHHHHhcCCcEEEe
Confidence 3667766 445567788876 677777665544 678888888888998876
No 417
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=22.52 E-value=1.5e+02 Score=20.19 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.7
Q ss_pred eEEEeeCCeEEEEEeCC---CHHHHHHHHHHHHhhhh
Q 033073 91 TFILMKEGALVDKLVGA---NPQAIRKMINGFIHSVR 124 (128)
Q Consensus 91 t~~~~~~g~~~~~~~g~---~~~~l~~~i~~~~~~~~ 124 (128)
+++++++|+++...... ....+++||..+.+..+
T Consensus 175 ~v~l~rdG~vv~~~~~~l~V~KvG~e~~i~~~A~~~~ 211 (236)
T PF09608_consen 175 RVYLFRDGQVVASQETPLRVRKVGFERWIYNLAHEQP 211 (236)
T ss_pred EEEEEECCEEEEEEeeEEEEEEccHHHHHHHHHHHCC
Confidence 36666999999766544 56789999988776543
No 418
>PLN02402 cytidine deaminase
Probab=22.12 E-value=1.5e+02 Score=21.18 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=16.1
Q ss_pred CcEEEEEeCCCChhhHHhhHHH
Q 033073 36 CPVVVHFTAAWCMPSVAMNHFF 57 (128)
Q Consensus 36 ~~~vv~f~~~~C~~C~~~~~~l 57 (128)
+..-|.+..+=|+.|+++...+
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 4555666778999999986554
No 419
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=21.97 E-value=88 Score=16.60 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=18.7
Q ss_pred CCcccCeEEEeeCCeEEEEEeCCCHHHHHHHHHHHHh
Q 033073 85 EIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIH 121 (128)
Q Consensus 85 ~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 121 (128)
|..++|.+| .|.-+-.+....-.+|..|+....+
T Consensus 14 Ga~~lP~II---GGSDLi~h~~~knseleeWl~~e~E 47 (65)
T PF08599_consen 14 GAGGLPHII---GGSDLIAHHAGKNSELEEWLRQEME 47 (65)
T ss_pred CCCCCCeee---cchhhhhccccccccHHHHHHHHHH
Confidence 456788887 4443322323333367777766543
No 420
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=21.91 E-value=1.1e+02 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHhcCCCcEEEEEeCC
Q 033073 20 SEKSWDLFITKATNQGCPVVVHFTAA 45 (128)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~vv~f~~~ 45 (128)
+.++|+.+.. .++||++.|.+-
T Consensus 88 sd~~Fd~lFT----~DkPViFafHGY 109 (203)
T PF09363_consen 88 SDEEFDALFT----KDKPVIFAFHGY 109 (203)
T ss_dssp -HHHHHHHH-----SSS-EEEEESSE
T ss_pred CHHHHHHhcC----CCCCEEEEcCCC
Confidence 7788999998 899999999863
No 421
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.48 E-value=2e+02 Score=17.86 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=18.9
Q ss_pred CChhhHHhhHHHHHHHHHcCCeEEEEEEccc
Q 033073 46 WCMPSVAMNHFFEELASTYQDILFLSVDVDE 76 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~ 76 (128)
+|..|.+..+.+.-+.++ +++.+..+...+
T Consensus 95 GC~GCartnEL~~~lir~-k~iPiLel~YP~ 124 (143)
T PF09885_consen 95 GCMGCARTNELTKYLIRQ-KGIPILELKYPT 124 (143)
T ss_pred cccccccHHHHHHHHHhh-cCCceEEeeCCC
Confidence 577777777666666665 466666665543
No 422
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.30 E-value=2.7e+02 Score=18.75 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHh-cCCcccCeEEEeeCCeEEE
Q 033073 34 QGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASK-MEIKAMPTFILMKEGALVD 102 (128)
Q Consensus 34 ~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~v~~~Pt~~~~~~g~~~~ 102 (128)
+++..+..=|+++.+--..|...-..+.+.--++.+..+.....+++... -++..+|...+...|....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 56777777778999877777777777776645788888888776776655 4688999888877776554
No 423
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=21.29 E-value=1e+02 Score=17.12 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=13.4
Q ss_pred CChhhHHhhHHHHHHHHH
Q 033073 46 WCMPSVAMNHFFEELAST 63 (128)
Q Consensus 46 ~C~~C~~~~~~l~~l~~~ 63 (128)
.|+.|+......+.+...
T Consensus 38 ~C~~C~~e~~~~~~~~~~ 55 (84)
T TIGR02949 38 ACPECLEEYGLEQAVKKL 55 (84)
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 899999888766665443
No 424
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=21.21 E-value=17 Score=27.61 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=45.0
Q ss_pred CCCCCCccccccceeecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc
Q 033073 2 QGNGNGAQLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY 64 (128)
Q Consensus 2 ~g~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~ 64 (128)
++.+.++......+.++.++.-+.+--.+ .++++|+..-+..|-+|+.-.+..+.+..+.
T Consensus 550 dweN~Saass~as~~eytgPkl~kepsak---snK~iI~naLshccLagkVne~~kk~ilee~ 609 (708)
T KOG3654|consen 550 DWENASAASSDASVKEYTGPKLYKEPSAK---SNKLIIHNALSHCCLAGKVNEPQKKGILEET 609 (708)
T ss_pred cccccccccccCccccccCcchhcChhhh---ccchHHHHHHHHHhhhhhcccHhhhhHHHHH
Confidence 45566666677777788777766665444 6888888888999999999999887766543
No 425
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.15 E-value=24 Score=24.55 Aligned_cols=6 Identities=33% Similarity=1.165 Sum_probs=3.3
Q ss_pred CChhhH
Q 033073 46 WCMPSV 51 (128)
Q Consensus 46 ~C~~C~ 51 (128)
|||.|+
T Consensus 276 ~CP~CQ 281 (282)
T PRK13945 276 WCPNCQ 281 (282)
T ss_pred ECCCCc
Confidence 555554
No 426
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=21.13 E-value=1.7e+02 Score=18.76 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.6
Q ss_pred hhHHhhHHHHHHHHHc-CCeEEEEEEcccc
Q 033073 49 PSVAMNHFFEELASTY-QDILFLSVDVDEV 77 (128)
Q Consensus 49 ~C~~~~~~l~~l~~~~-~~~~~~~v~~~~~ 77 (128)
.|..+...++++.+.. +++.|+.++.+..
T Consensus 73 ~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~ 102 (161)
T COG3265 73 ACSALKRSYRDLLREANPGLRFVYLDGDFD 102 (161)
T ss_pred ecHHHHHHHHHHHhccCCCeEEEEecCCHH
Confidence 4778888888887776 7899999998743
No 427
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=21.00 E-value=1.1e+02 Score=18.07 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=11.0
Q ss_pred CCCChhhHHhhHHHH
Q 033073 44 AAWCMPSVAMNHFFE 58 (128)
Q Consensus 44 ~~~C~~C~~~~~~l~ 58 (128)
.+.||.|.+-...+.
T Consensus 31 ~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 31 SSQCPSCNKKRAELA 45 (104)
T ss_pred cccChHHHHHHHHHH
Confidence 457999988766553
No 428
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.72 E-value=1e+02 Score=13.66 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=8.4
Q ss_pred eCCCHHHHHHHHHH
Q 033073 105 VGANPQAIRKMING 118 (128)
Q Consensus 105 ~g~~~~~l~~~i~~ 118 (128)
.|.+.+++++|++.
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 36677888887764
No 429
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.60 E-value=3.4e+02 Score=19.66 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=50.5
Q ss_pred ceeecCChhhHHHHHHHHh--cCCCcEEEEEe-CCCChhhHHhhHHHHHHHHHcCCeEEEEEEc-----ccchhHHHhcC
Q 033073 14 RVARVNSEKSWDLFITKAT--NQGCPVVVHFT-AAWCMPSVAMNHFFEELASTYQDILFLSVDV-----DEVKVVASKME 85 (128)
Q Consensus 14 ~v~~i~~~~~~~~~~~~~~--~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~-----~~~~~~~~~~~ 85 (128)
.+.+++++++++++....+ ...++.+|-|. .+.++--.-....+..+.++--.+..++.+. |....-..++.
T Consensus 180 ~~~nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~ 259 (366)
T PRK14489 180 AFFNVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLR 259 (366)
T ss_pred ccccCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHH
Confidence 4678999999988766431 01133344444 5788776666666777766422344454332 33333455566
Q ss_pred CcccCeEEEeeCCeE
Q 033073 86 IKAMPTFILMKEGAL 100 (128)
Q Consensus 86 v~~~Pt~~~~~~g~~ 100 (128)
-.+...+++...+..
T Consensus 260 ~aGa~~v~~~~~~~~ 274 (366)
T PRK14489 260 AAGANPTMIVCPERW 274 (366)
T ss_pred hCCCceEEEEcCCeE
Confidence 667777777655543
No 430
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=3.8e+02 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCChhhHHhhHHHHHHHHHcCCeEEEEEEccc---------chhHHHhc--CCcccCeEEEeeC
Q 033073 36 CPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDE---------VKVVASKM--EIKAMPTFILMKE 97 (128)
Q Consensus 36 ~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~---------~~~~~~~~--~v~~~Pt~~~~~~ 97 (128)
..-|+.|.=|+|+- ..+.+-+....+++|+.|-..+ ...+..-| --.+.|.+|||.+
T Consensus 545 PsGvLL~GPPGCGK-----TLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGK-----TLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred CCceEEeCCCCccH-----HHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecc
Confidence 44566666779984 2333333333789999886431 11222222 1257999999954
No 431
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.46 E-value=2.1e+02 Score=19.83 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=14.2
Q ss_pred EEEEEeCCCChhhH-HhhHHHHHHHHHcCCeEEEE
Q 033073 38 VVVHFTAAWCMPSV-AMNHFFEELASTYQDILFLS 71 (128)
Q Consensus 38 ~vv~f~~~~C~~C~-~~~~~l~~l~~~~~~~~~~~ 71 (128)
+++-|.+++-.... .+...-+++.+.||+..+..
T Consensus 4 llvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~ 38 (262)
T PF06180_consen 4 LLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRR 38 (262)
T ss_dssp EEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 44455555544444 34444455555555544443
No 432
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=20.39 E-value=1.9e+02 Score=16.54 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=26.3
Q ss_pred eecCChhhHHHHHHHHhcCCCcEEEEEeCCCChhhHHhhHHHHHHHHHc-CCeEEEEEE
Q 033073 16 ARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTY-QDILFLSVD 73 (128)
Q Consensus 16 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~v~ 73 (128)
.++.+.+++.. +.. +.+.++-+|-....+.- ..+++++..+ .+..|+..-
T Consensus 2 kef~~~~eL~~-id~---~kr~iIgYF~~~~~~eY----~~f~kvA~~lr~dC~F~v~~ 52 (91)
T cd03070 2 KEFRNLDELNN-VDR---SKRNIIGYFESKDSDEY----DNFRKVANILRDDCSFLVGF 52 (91)
T ss_pred ceecCHHHHHh-hCc---CCceEEEEEcCCCChhH----HHHHHHHHHHhhcCeEEEEe
Confidence 35556666666 331 44555555555555543 3455566655 355665443
No 433
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=20.38 E-value=3.1e+02 Score=19.80 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHcCCeEEEEEEc
Q 033073 52 AMNHFFEELASTYQDILFLSVDV 74 (128)
Q Consensus 52 ~~~~~l~~l~~~~~~~~~~~v~~ 74 (128)
.+...+++++.++|++.|+.+|.
T Consensus 107 ~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 107 AFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhhHHHHHHHHCCCCEEEEecC
Confidence 45567788888889999999887
No 434
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=20.37 E-value=84 Score=16.75 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCCChhhHHhhHHHHHHHHHcCCeEEEEEEcccchhHHHhcCCcccCeEEEe
Q 033073 44 AAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILM 95 (128)
Q Consensus 44 ~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 95 (128)
.+.||.|.. ..+..++.++..+ +|-+ +..+++..++. +|-.+.+
T Consensus 17 ~~~Cp~Cgs-----~~~S~~w~G~v~i-~dPe-~S~vAk~~~i~-~pG~YAl 60 (64)
T PRK06393 17 EKTCPVHGD-----EKTTTEWFGFLII-TEPE-GSAIAKRAGIT-EPGMYAI 60 (64)
T ss_pred CCcCCCCCC-----CcCCcCcceEEEE-ECCc-hhHHHHHhCCC-CCCeEEE
Confidence 557888876 2444455454333 2433 45788888887 7754443
No 435
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=20.24 E-value=3e+02 Score=19.70 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=46.4
Q ss_pred cceeecCChhhHHHHHHHHhcCCCcEEEEEe---CCCChhhHHhhHHHHHHHHHc--CCeEEEEEEcccchhHHHhcCCc
Q 033073 13 SRVARVNSEKSWDLFITKATNQGCPVVVHFT---AAWCMPSVAMNHFFEELASTY--QDILFLSVDVDEVKVVASKMEIK 87 (128)
Q Consensus 13 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~---~~~C~~C~~~~~~l~~l~~~~--~~~~~~~v~~~~~~~~~~~~~v~ 87 (128)
+.+++| +.....+..-..+.+-...+-+|- ..||-+-....+.+-.|.+.- +++.--.++ |.
T Consensus 287 Gdliei-~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~------------Id 353 (392)
T KOG1085|consen 287 GDLIEI-SEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKETPWLGRLINHSVRGNLKTKVVE------------ID 353 (392)
T ss_pred cceeee-chHHHHHHHhccCcccceEEEeeeccCeeeeeecccccccchhhhcccccCcceeeEEE------------ec
Confidence 345556 333333333322223344444443 357877777777777776643 344333333 45
Q ss_pred ccCeEEEee-----CCeEEEEEeCC-CHHHHH
Q 033073 88 AMPTFILMK-----EGALVDKLVGA-NPQAIR 113 (128)
Q Consensus 88 ~~Pt~~~~~-----~g~~~~~~~g~-~~~~l~ 113 (128)
+.|.+|++. .|.++.+..|- +.+.|.
T Consensus 354 g~pHLiLvA~rdIa~GEELlYDYGDRSkesi~ 385 (392)
T KOG1085|consen 354 GSPHLILVARRDIAQGEELLYDYGDRSKESIA 385 (392)
T ss_pred CCceEEEEeccccccchhhhhhccccchhHHh
Confidence 778888872 45555555555 555543
Done!