BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033075
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M ++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111
Query: 119 G 119
Sbjct: 112 A 112
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
GQ LRS W Y+E +++V+D+A R +D + L
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
GQ LRS W Y+E +++V+D+A R +D + L
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
WD+GGQ +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 59
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
WD+GGQ +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVG 68
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
GQ LRS W Y+E +++V+D+A R +D + L
Sbjct: 69 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 110
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G N+
Sbjct: 2 NIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNV 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
+E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 53 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 111
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
+ E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNV 370
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
WD+GGQ +R +W YY ++FV+D A R ++++ L + R
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR 419
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + +PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N WD+GGQ +RS+W YY V+FVID+ SR +++ + +
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRML 111
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F K + +L++G+D AGKTT+L K+K V + + PT+G N+ +E
Sbjct: 8 LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEF 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
N WD+GGQ +R +W YY ++FV+D+ R +D++ L + K+
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
WD+GG +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 61 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
K +F K E + ++G+ +GKTT + + S N + ++PTVG N+ +I N
Sbjct: 24 KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVT 77
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
+ WD+GGQP RS+WE+Y A+V+++DAA + E SK L
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNEL 122
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
LF +W+ +F E V+I+G+D AGKTT+L + +S E + PT+G N+ I
Sbjct: 4 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
LF +W+ +F E V+I+G+D AGKTT+L + +S E + PT+G N+ I
Sbjct: 4 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ IF K + +L++G+D AGKTT+L KLK + + + PT+G N+ +E
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 70
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N WD+GGQ +R +W Y++ ++FV+D+ R ++S L K
Sbjct: 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKML 123
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + +PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N WD+GGQ +RS+W YY V+FV+D+ SR +++ + +
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRML 111
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E HVL LG+D +GKTT++ KLK SN + I+PT+G +I + + S+ +D+
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKP--SNAQS---QNILPTIGFSIEKFKSSSLSFTVFDMS 75
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
GQ R++WE YY+E A++FVID++ R +K L K R
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
GGQ +R W Y+E +++VID+A RFE++
Sbjct: 56 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGR 62
F L+ +F K E +L++G+D AGKTT+L KLK + + + PT+G N+
Sbjct: 8 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVET 58
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
+E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 115
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+G
Sbjct: 17 EVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDIG 69
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
GQ +R W Y+E +++VID+A RFE++
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 103
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDIG 68
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
GQ +R W Y+E +++VID+A RFE++
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GG
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
Q +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GG
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
Q +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
+ K E +L++G+D AGKT++L KLK + + + PT+G N+ +E N
Sbjct: 12 LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTI---------PTIGFNVETVEYKNIS 62
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
WD+GGQ +R +W YY+ A++FV+D+ R +++ L K
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKML 111
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+GG
Sbjct: 2 LRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGG 54
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
LRS W Y+E +++V+D+A R +D + L
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 95
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+K E + ++G+ +GKTT + + S N + ++PTVG N+ +I N + W
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLW 72
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
D+GGQP RS+WE+Y A+V+++DAA + E SK L
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL 117
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + + PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVECVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N WD+GGQ +RS+W YY V+FV+D+ SR +++ + +
Sbjct: 59 CNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRML 111
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
+F K E +L++G+D AGKTT+L KLK + + +PT+G N+ +E N
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNIS 210
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
WD+GGQ +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 260
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+G
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 55
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
G +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+G
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 54
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
G +R +W YY ++FV+D A R ++++ L + R ++
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
+L LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GGQ
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121
+R +W YY ++FV+D A R ++++ L + R
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR 97
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+K E + ++G+ +GKTT + + S G + ++PTVG N+ ++ N + W
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIW 72
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
D+GGQP RS+WE+Y +A+V++IDAA + E S+ L
Sbjct: 73 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLL 117
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F K + +L++G+D AGKTT+L KLK + + + PT+G N+ +E
Sbjct: 8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
N WD+GGQ +R +W+ Y++ ++FV+D+ R ++ L K
Sbjct: 59 KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML 111
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
S+F LW + E +LILG+D AGKTT+L +L+ V + PT+G N+
Sbjct: 7 SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQIGEVVTTK---------PTIGFNV 54
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
+ N KL WDLGGQ +R W YY + AV+FV+D+ R + L
Sbjct: 55 ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKEL 108
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
GG +R W Y+E +++VID+A RFE++
Sbjct: 56 GGLRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNI 60
+F LW +F E V+I+G+D AGKTT+L + + V+++ PT+G N+
Sbjct: 4 IFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS----------PTIGSNV 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
I V N+ + WD+GGQ LRS W YY ++ V+D+ R +K L +
Sbjct: 53 EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLA 111
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK V + + PT+G N+ ++ N WD+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDV 51
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
GGQ +RS+W YY V+FV+D+ SR +++ + +
Sbjct: 52 GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLN 95
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 17 EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
E +LILG+D AGKTT+L +L+ V + + PT+G N+ + N K WD
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 52
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
LGGQ +R W YY AV++V+D+ R SK+ L
Sbjct: 53 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 92
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 26 DKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85
D AGKTT+L+K G D I PT+G NI +E KL WD+GGQ LRS W
Sbjct: 27 DNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
Y+E +++V+D+A R +D + L
Sbjct: 80 RNYFESTDGLIWVVDSADRQRXQDCQRELQSLL 112
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E V+I+G+D AGKTT+L + +S E + PT+G N+ I ++N++ + WD+G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 73
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
GQ LRS W YY V+ V+D+ R ++ L K
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 116
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E V+I+G+D AGKTT+L + +S E + PT+G N+ I ++N++ + WD+G
Sbjct: 22 EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 74
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
GQ LRS W YY V+ V+D+ R ++ L K
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 117
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
+L LG+D AGKTTLL LK+ DR+ PT + + N K +DLG
Sbjct: 4 LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 53
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
G R +W+ Y+ E + +VF++DAA P RF++++ L F + K+ F
Sbjct: 54 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 105
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK + + +PT+G N+ +E N WD+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNISFTVWDV 51
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
GGQ +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 52 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 95
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
+L LG+D AGKTTLL LK+ DR+ PT + + N K +DLG
Sbjct: 26 LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 75
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128
G R +W+ Y+ E + +VF++DAA P RF++++ L F + K+ F
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 127
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 17 EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
E +LILG+D AGKTT+L +L+ V + + PT+G N+ + N K WD
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 54
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
LGG +R W YY AV++V+D+ R SK+ L
Sbjct: 55 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 94
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +LILG+D AGKTT+L +L+ V V +PT+G N+ + N K WDLG
Sbjct: 7 EXRILILGLDGAGKTTILYRLQ-VGEVVT------TIPTIGFNVETVTYKNLKFQVWDLG 59
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
G +R W YY AV++V+D+ R SK+
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK + + +PT+G N+ +E N WD+
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNISFTVWDV 53
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119
GG +R +W Y++ ++FV+D+ R +++ L +
Sbjct: 54 GGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 97
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+KT+ V++ G+D +GKTT++ ++K S+ + I TVG N+ E +
Sbjct: 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----HITATVGYNVETFEKGRVAFTVF 68
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
D+GG R +WE YY+ AV+FV+D++
Sbjct: 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSS 97
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 28 FLGLYK-----KSGKLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 72
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118
+ ++ +DLGG R +W+ Y + +VF++D A SR +SK L
Sbjct: 73 ELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM 129
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 15 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 59
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L
Sbjct: 60 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 112
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 18 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 62
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 115
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+ VL+LG+D AGKT++L +L VPTVG+N+ ++ N WDLG
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLG-------DVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
GQ G+R W Y+ + AV++V+D+ R +K L
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHEL 112
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 9 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 53
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L
Sbjct: 54 ELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 106
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
F ++++G GKT L+ + +GL P T+G++ I +E++ K L W
Sbjct: 27 FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
D GQ RSI + YY A+A++ D C F
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESF 114
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
F ++++G GKT L Y G PDR T+G++ I+ K+ W
Sbjct: 30 FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFE 108
D GQ R S+ + YY HAVVFV D + F
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFH 119
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
F ++++G GKT L Y G PDR T+G++ I+ K+ W
Sbjct: 21 FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFE 108
D GQ R S+ + YY HAVVFV D + F
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFH 110
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEVSNS 68
F F V+++G GKT LL + K + TVG++ + ++
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
KL WD GQ RS+ YY +AHA++ + D + F++
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + D + T+G++ I I + N KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F++ K
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVK 101
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 7 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 98
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 7 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 98
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 26 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 117
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 9 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 100
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 34 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 125
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK LL + + + + T+G++ I IE+ KL W
Sbjct: 17 FKLLLIGDSGVGKNCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
F +LI+G GK++LL + + + T+G++ I +E++ K L W
Sbjct: 10 FKLLIIGDSGVGKSSLLLRF------ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY H V+ V D F + K
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK 101
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 17 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D F + K
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
GQ R+I YY +H ++ V D F
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
GQ R+I YY +H ++ V D F
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D + + K
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVK 101
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNSKL 70
F V++LG GKT+L V E D+ + T+G LNIG V+ L
Sbjct: 7 FKVVLLGEGCVGKTSL------VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN---L 57
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALGKFFGMRIC---- 123
WD GQ ++ YY +++ + V D F+ K L K G IC
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117
Query: 124 -------KERH 127
KERH
Sbjct: 118 GNKIDLEKERH 128
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F ++++G GKT ++++ K+ G +R T+G++ I+ KL W
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
D GQ R+I + YY A+ + D S F
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSF 117
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY AH ++ V D + + K
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVK 101
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVF 72
+ V+I+G GKT+L+E+ + + TVG++ I +E+ K L
Sbjct: 26 KLQVIIIGSRGVGKTSLMERF------TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD GQ SI YY A ++ V D F+D
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 116
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 76
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
GQ R+I YY +H ++ V D F
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 109
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
+L++G GK+ LL + + + + T+G++ I IE+ KL WD
Sbjct: 2 LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
GQ R+I YY AH ++ V D F + K
Sbjct: 56 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 91
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
+L++G GK+ LL + + + + T+G++ I IE+ KL WD
Sbjct: 1 LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 54
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
GQ R+I YY AH ++ V D F + K
Sbjct: 55 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK 90
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLV---F 72
F ++++G GK+ LL + N+E T+G+ I++ N+K++
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLES------KSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD GQ R+I YY A + V D + FE+
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFEN 98
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLV 71
T +LI+G GK++LL + + P+ + T+G++ ++ + +KL
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTD-----DTFDPE-LAATIGVDFKVKTISVDGNKAKLA 67
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
WD GQ R++ YY A V+ V D F
Sbjct: 68 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 18 FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V++LG GKT+L L ++ +++ T LNIG V+ L WD
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALGKFFGMRIC---------- 123
GQ ++ YY +++ + V D F+ K L K G IC
Sbjct: 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123
Query: 124 -KERH 127
KERH
Sbjct: 124 EKERH 128
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GKT +L + N + + D + T+ L+ RI KL WD
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 61
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
GQ R+I YY A ++ V D F++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 96
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GKT +L + N + + D + T+ L+ RI KL WD
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
GQ R+I YY A ++ V D F++
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 18 FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V++LG GKT+L L ++ +++ T LNIG V+ L WD
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 77
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALGKFFGMRIC---------- 123
GQ ++ YY +++ + V D F+ K L K G IC
Sbjct: 78 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 137
Query: 124 -KERH 127
KERH
Sbjct: 138 EKERH 142
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNSKL--VFW 73
F ++++G GK+ LL + + N+E T+G+ IEV N K+ W
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKS------TIGVEFATRTIEVENKKIKAQIW 64
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D G R+I YY A + V D + S +E+
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN 100
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---- 62
G K ++ + +++ G GK++ L +L + + I T+G++
Sbjct: 18 GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRL------CKNEFRENISATLGVDFQMKTLI 71
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
++ + L WD GQ RSI + Y+ +A V+ + D C F
Sbjct: 72 VDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF 116
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
F +LI+G GKT+ L + Y++ P V TVG++ + + KL W
Sbjct: 6 FKILIIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
D GQ R+I YY A + + D F
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
K V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72 --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
WD GQ +S+ +Y A V V D P+ F+
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
+L++G GK+ LL + VE + T+G++ I ++++ K L W
Sbjct: 21 MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY A ++ V D F + K
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK 112
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 18 FHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV---F 72
V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
WD GQ +S+ +Y A V V D P+ F+
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
+L++G GK+ LL + VE + T+G++ I ++++ K L W
Sbjct: 8 MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 61
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY A ++ V D F + K
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK 99
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE 64
F G + Y+F +LI+G GKT+ L + Y++ P V TVG++
Sbjct: 16 FQGNFDYMF-----KLLIIGNSSVGKTSFLFR----YADDTFTPA--FVSTVGIDFKVKT 64
Query: 65 V----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
V KL WD GQ R+I YY A + + D F
Sbjct: 65 VYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 12 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVID 100
D GQ RS+ YY A + V D
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYD 92
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 6 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
GQ R+I YY A ++ V D F + K
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIK 95
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 18 FHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV---F 72
V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
WD GQ +S+ +Y A V V D P+ F+
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 11 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVID 100
D GQ RS+ YY A + V D
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYD 91
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNV--EGLPPDRIVPTVGLNIGRIEVSNSKLV 71
K V+ILG GKT+L+ + + YS + D + V ++ ++ + +
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKV----ATMQ 61
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
WD GQ +S+ +Y A V V D S FE+ K+
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS 102
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
+L++G GK+ LL + VE + T+G++ I ++++ K L W
Sbjct: 4 MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 57
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
D GQ R+I YY A ++ V D F + K
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIK 95
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFW 73
F +L++G GKT+ L + Y++ P V TVG++ V KL W
Sbjct: 23 FKLLLIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
D GQ R+I YY A + + D A F
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 6 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
GQ R+I YY A ++ V D F + K
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDITDERTFTNIK 95
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 18/91 (19%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
F +I+G GK+ LL + R P L IG I+ K
Sbjct: 22 FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMVNIDGKQIK 71
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
L WD GQ RSI YY A + V D
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYD 102
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 14 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 66
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117
G P ++ Y ++ AV+ D SR E +AL K+
Sbjct: 67 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKKW 105
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 82
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117
G P ++ Y ++ AV+ D SR E +AL K+
Sbjct: 83 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKKW 121
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 13 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 65
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117
G P ++ Y ++ AV+ D SR E +AL K+
Sbjct: 66 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKKW 104
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F ++++G GK+ LL + N++ T+G+ IE K W
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDS------KSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D GQ R+I YY A + V D + S +E+
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYEN 103
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 18/91 (19%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
F +I+G GK+ LL + R P L IG I+ K
Sbjct: 11 FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMITIDGKQIK 60
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
L WD GQ RSI YY A + V D
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYD 91
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 74
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D GQ R+I YY A + V D A +E+
Sbjct: 75 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYEN 110
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 6 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTIRLQL 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD GQ RS+ Y ++ A V V D + F+ +
Sbjct: 60 WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT 97
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 10 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
G P ++ Y ++ AV+ D + P +
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D GQ R+I YY A + V D A +E+
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYEN 119
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 26 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 79
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
G P ++ Y ++ AV+ D + P +
Sbjct: 80 GSPYYDNVRPLSYPDSDAVLICFDISRPETLD 111
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 17 EFHVLILGIDKAGKTTLLEKL-----KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
++ ++ LG GKT+++ + + Y + G+ D + T+ L+ G + +L
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGI--DFLSKTLYLDEGPV-----RLQ 53
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD GQ RS+ Y ++ A + V D FE++
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 92
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 31 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
G P ++ Y ++ AV+ D + P +
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
F L++G GK+ LL + +E T+G+ G V+ KL W
Sbjct: 26 FKFLVIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVID 100
D GQ RS+ YY A + V D
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYD 106
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 28/111 (25%)
Query: 18 FHVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPD-------------RIVPTVGLNI 60
++I+G GK+TLL +L +++ +++ G D RIV T G+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR- 302
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
S + + LG + L+ I E+A V+FV+DA+ P ED K
Sbjct: 303 -----SETNDLVERLGIERTLQEI-----EKADIVLFVLDASSPLDEEDRK 343
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS--K 69
++ ++++G GK++++++ +G+ T+G++ +I+V++ +
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRY------CKGIFTKDYKKTIGVDFLERQIQVNDEDVR 55
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
L+ WD GQ +I + YY A A V V FE
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 1 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 54
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD GQ RS+ Y ++ V V D + F+ +
Sbjct: 55 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 92
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG K GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESKVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVF- 72
T +++LG GK++++ L+ V ++ + PT+G R+ ++ + F
Sbjct: 2 TSIKLVLLGEAAVGKSSIV--LRFVSNDF----AENKEPTIGAAFLTQRVTINEHTVKFE 55
Query: 73 -WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
WD GQ S+ YY A A + V D P F
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF 91
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
E V +LG GK+++ V+ VE I PT+G + ++ N K +
Sbjct: 5 ELKVCLLGDTGVGKSSI------VWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 58
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ R++ YY + A + V D
Sbjct: 59 WDTAGQERFRALAPMYYRGSAAAIIVYD 86
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 2 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD GQ RS+ Y ++ V V D + F+ +
Sbjct: 56 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT 93
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 9 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVID 100
D G RS+ YY A + V D
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYD 89
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 55 TVGLNIGR--IEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
T+G+ G IEVS K L WD GQ R++ YY A + V D
Sbjct: 47 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
K V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72 --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
WD G +S+ +Y A V V D P+ F+
Sbjct: 59 MQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDGKTIKAQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D GQ R I YY A + V D A +E+
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYEN 95
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKS-VYSNVE-GLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
++ VL +G+ +GKT L +L + Y + + + + V N G + L
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRG------NSLTLI 59
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSR 106
DL G LR + +++ A AVVFV+D+A R
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQR 93
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + VPT+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD GQ + + YY +A + + D +++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 55 TVGLNIGR--IEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
T+G+ G IEVS K L WD GQ R++ YY A + V D
Sbjct: 62 TIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYD 111
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSK--LVFWDLG 76
++I+G GKT LL N +G P+ VPTV N + +EV + L WD
Sbjct: 13 LVIVGDGACGKTCLL------IVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTA 66
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
GQ + Y +++ V+ P E+
Sbjct: 67 GQEDYDRLRPLSYPDSNVVLICFSIDLPDSLEN 99
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 14 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 67
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD GQ RS+ Y ++ V V D + F +
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT 105
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG + GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESRVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 17 EFHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSK 69
+ +++LG +GKT+L E Y GL RI LN+
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNV--------T 57
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
L WD+GGQ + +KY A V+ V D FE+
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 18 FHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
F +LI+G GKT+ L + + + G+ D V T+ N RI KL
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTIYRNDKRI-----KLQI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
WD G R+I YY A + D F
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESF 96
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
K WD GQ S+ YY A A + V D + FE +K
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK 104
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVF 72
+F +++LG GK++L+ + V+G + T+G V + K
Sbjct: 8 QFKLVLLGESAVGKSSLVLRF------VKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
WD GQ S+ YY A A + V D F +KT
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKT 101
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG + GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESEVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + VPT+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN 98
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV----GLNIGRIEVSNSKLVFWDL 75
V+++G GKT+LL +G P+ PTV +N+ +++ L WD
Sbjct: 37 VVLVGDGGCGKTSLLMVF------ADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDT 89
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
GQ + +Y +A ++ D P+ F++
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDN 123
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 7 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 100
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 7 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKN 100
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D G R+I YY A + V D A +E+
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYEN 119
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D G R+I YY A + V D A +E+
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYEN 98
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D G R+I YY A + V D A +E+
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYEN 101
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
D G R+I YY A + V D A +E+
Sbjct: 60 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYEN 95
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 3 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN 96
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESPVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESLVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
GQ S+ YY A A + V D F +K
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
E V +LG GK++++ + V+ I PT+G + + N K +
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRF------VQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ S+ YY + A V V D
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYD 104
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + + T+G++ +E +L
Sbjct: 13 KFKLVFLGEQSVGKTSLITRF--MYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD G RS+ Y ++ A V V D + F+ +
Sbjct: 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT 104
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
E V +LG GK++++ + VE I PT+G + ++ N K +
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRF------VEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD G R++ YY + A + V D
Sbjct: 60 WDTAGLERFRALAPMYYRGSAAAIIVYD 87
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
N K WD GQ SI YY A + V D + + + +KT
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT 137
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD GQ + + YY +A + + D +++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 13 QVQFKLVLVGDGGTGKTTFVKR------HLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 96
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 6 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD G RS+ Y ++ V V D + F+ +
Sbjct: 60 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 97
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 20/120 (16%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------SNSK- 69
+L LG GKTT L + Y++ + P + + TVG++ V S+ K
Sbjct: 28 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 70 ----LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125
L WD GQ RS+ ++ +A + + D F + + + + C+
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + + T+G++ +E +L
Sbjct: 16 KFKLVFLGEQSVGKTSLITRF--MYDSFD----NTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
WD G RS+ Y ++ V V D + F+ +
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 107
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 54
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 84
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99
V T G+ N +D+GGQ R W +E+ A++F +
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCV 205
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV----- 71
E V ++G AGKT+LL++L E P + T GLN+ + N K +
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIG-----ETFDP-KESQTHGLNVVTKQAPNIKGLENDDE 94
Query: 72 -------FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105
FWD GGQ + + + + + + ++D+ S
Sbjct: 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS 135
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 62 NVWDTAGQEKFGGLEDGYYIQAQCAIIMFD 91
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 13 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 96
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99
VPT G+ + +D+GGQ R W +E A++F +
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV 224
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPP 49
VLI+G+ GK+T++ KLK ++ G P
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
G S+ YY A A + V D F +K
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 98
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V I+G GKT+LLE ++S + V I +G +E N + F D G
Sbjct: 7 VTIMGHVDHGKTSLLEYIRS--TKVASGEAGGITQHIGAY--HVETENGMITFLDTPGHA 62
Query: 80 GLRSIWEKYYEEAHAVVFVI---DAACPSRFE 108
S+ + + VV V+ D P E
Sbjct: 63 AFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
Length = 367
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 15 KTEFHVLILGIDKAGK 30
KT F V++LGIDKAG+
Sbjct: 36 KTRFDVVLLGIDKAGQ 51
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V+I G GK+TLL+ L + + P T G+N+G+ E + D P
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYP----FTTRGINVGQFEDGYFRYQIID---TP 222
Query: 80 GL--RSIWEKYYEEAHAVV 96
GL R I E+ E A++
Sbjct: 223 GLLDRPISERNEIEKQAIL 241
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 15 KTEFHVLILGIDKAGK 30
KT F V++LGIDKAG+
Sbjct: 33 KTRFDVVLLGIDKAGQ 48
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V+++G GKT LL + ++ +S+ T + +G V K WD
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV---KAQIWDTA 67
Query: 77 GQPGLRSIWEKYYEEAHAVVFVID 100
G R+I YY A + V D
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFD 91
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99
PT G++ + +D+GGQ R W + +E A++F +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCV 211
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + + D
Sbjct: 62 NVWDTAGQEKYGGLRDGYYIQAQCAIIMFD 91
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 16 TEFHVLILGIDKAGKTTL--LEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
T V+ + GK L +++L V GLPPD++V + NIG
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV-AIASNIG 268
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V+++G GKT LL + ++ +S+ T + +G V K WD
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV---KAQIWDTA 82
Query: 77 GQPGLRSIWEKYYEEAHAVVFVID 100
G R+I YY A + V D
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFD 106
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100
WD GQ + + YY +A + D
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIXFD 91
>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GSI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GTV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1GTV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1MRN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Bisubstrate Inhibitor
(Tp5a)
pdb|1MRS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With 5-Ch2oh Deoxyuridine
Monophosphate
pdb|1N5I|A Chain A, Crystal Structure Of Inactive Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp) At Ph 4.6 (Resolution 1.85 A)
pdb|1N5J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine Diphosphate
(Tdp) And Thymidine Triphosphate (Ttp) At Ph 5.4 (1.85
A Resolution)
pdb|1N5K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5K|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1N5L|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1W2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2G|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2H|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
pdb|1W2H|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
Length = 214
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 20 VLILGIDKAGKTTLLEKLKSVY 41
+ I G+D AGK TL+EKL +
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAF 24
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
G S+ YY A A + V D F +K
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN 98
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL 47
++E+ L+ + KAGK T E +S Y N+ GL
Sbjct: 129 RSEWSDLLSDLQKAGKITAEEATRSSYLNIVGL 161
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V I+G GKTTLL+ ++ +S V I +G ++ V++ K+ F D G
Sbjct: 11 VTIMGHVDHGKTTLLDAIR--HSKVTEQEAGGITQHIGAY--QVTVNDKKITFLDTPGHE 66
Query: 80 GLRSIWEKYYEEAHAVVFVI---DAACPSRFE 108
++ + + V+ V+ D P E
Sbjct: 67 AFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V I+G GKTTLL+KL+ + V + I +G + + S K+ F D G
Sbjct: 7 VTIMGHVDHGKTTLLDKLRK--TQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHA 63
Query: 80 GLRSIWEKYYEEAHAVVFVIDA 101
++ + + V+ V+ A
Sbjct: 64 AFSAMRARGTQVTDIVILVVAA 85
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1OA0|A Chain A, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1OA0|B Chain B, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1UPX|A Chain A, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States.
pdb|1UPX|B Chain B, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States
Length = 544
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 36 KLKSVYSN-VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
K +S Y++ EGLP D ++ T G R +KL D+GG P
Sbjct: 404 KSRSYYTDFAEGLPKDTVILTAGCAKYRY----NKLNLGDIGGIP 444
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 36 KLKSVYSN-VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
K +S Y++ EGLP D ++ T G R +KL D+GG P
Sbjct: 404 KSRSYYTDFAEGLPKDTVILTAGCAKYRY----NKLNLGDIGGIP 444
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 4 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 57
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD G + + YY +A + + D +++
Sbjct: 58 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 96
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 10 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 63
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
WD G + + YY +A + + D +++
Sbjct: 64 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 102
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 6 YGLWKYI-------FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG 46
+ WK+I F KT V ILG + +GK+ L+ KL +V++
Sbjct: 155 FQYWKFIPKEARPFFAKT---VAILGGESSGKSVLVNKLAAVFNTTSA 199
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 20 VLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTV 56
VLI+G GK+TL KL K++ + EG+ D + TV
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,975,366
Number of Sequences: 62578
Number of extensions: 156342
Number of successful extensions: 988
Number of sequences better than 100.0: 208
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 222
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)