Query 033075
Match_columns 128
No_of_seqs 124 out of 1230
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 99.9 1.9E-27 4.1E-32 153.4 10.3 100 16-121 8-111 (205)
2 KOG0070 GTP-binding ADP-ribosy 99.9 9.7E-28 2.1E-32 153.5 8.6 120 1-127 1-120 (181)
3 PLN00223 ADP-ribosylation fact 99.9 3E-26 6.4E-31 150.2 13.6 120 1-127 1-120 (181)
4 PTZ00133 ADP-ribosylation fact 99.9 6E-26 1.3E-30 148.8 13.3 120 1-127 1-120 (182)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 4.5E-26 9.7E-31 147.0 11.1 103 16-124 21-127 (221)
6 KOG0092 GTPase Rab5/YPT51 and 99.9 1.3E-25 2.9E-30 144.4 9.9 102 15-122 3-108 (200)
7 smart00177 ARF ARF-like small 99.9 1.1E-24 2.5E-29 141.9 12.6 116 1-127 1-116 (175)
8 KOG0071 GTP-binding ADP-ribosy 99.9 1E-24 2.2E-29 134.1 10.9 120 1-127 1-120 (180)
9 PF00025 Arf: ADP-ribosylation 99.9 1.1E-24 2.4E-29 142.0 10.9 115 6-127 2-117 (175)
10 KOG0080 GTPase Rab18, small G 99.9 4.3E-24 9.2E-29 134.2 10.5 99 16-120 10-112 (209)
11 cd04149 Arf6 Arf6 subfamily. 99.9 7.7E-24 1.7E-28 137.2 11.9 107 14-127 6-112 (168)
12 KOG0073 GTP-binding ADP-ribosy 99.9 2.1E-23 4.5E-28 131.2 12.0 105 14-125 13-117 (185)
13 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.5E-23 5.3E-28 133.7 11.9 103 18-127 1-103 (159)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 3.2E-23 6.8E-28 136.0 12.4 101 14-120 2-106 (182)
15 KOG0076 GTP-binding ADP-ribosy 99.9 5.7E-24 1.2E-28 134.9 8.1 127 1-127 1-128 (197)
16 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.9E-23 1.5E-27 133.3 13.2 116 5-127 3-118 (174)
17 KOG0394 Ras-related GTPase [Ge 99.9 3.7E-24 8E-29 137.0 6.9 105 14-124 6-114 (210)
18 cd04120 Rab12 Rab12 subfamily. 99.9 6.3E-23 1.4E-27 136.5 12.5 96 18-119 1-100 (202)
19 KOG0079 GTP-binding protein H- 99.9 1.2E-23 2.5E-28 130.6 8.1 99 17-121 8-110 (198)
20 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.2E-22 2.6E-27 132.1 12.6 98 17-120 2-102 (172)
21 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1E-22 2.2E-27 133.6 12.3 97 18-120 1-101 (182)
22 KOG0078 GTP-binding protein SE 99.9 6.8E-23 1.5E-27 133.8 11.3 101 16-122 11-115 (207)
23 KOG0095 GTPase Rab30, small G 99.9 4.2E-23 9.1E-28 128.5 9.8 98 17-120 7-108 (213)
24 cd01875 RhoG RhoG subfamily. 99.9 1.1E-22 2.3E-27 134.3 12.3 97 17-119 3-103 (191)
25 cd04136 Rap_like Rap-like subf 99.9 1.4E-22 3E-27 129.9 12.5 105 17-127 1-108 (163)
26 cd04131 Rnd Rnd subfamily. Th 99.9 9.4E-23 2E-27 133.3 11.8 98 17-120 1-102 (178)
27 cd04133 Rop_like Rop subfamily 99.9 9.4E-23 2E-27 133.1 11.7 97 18-120 2-102 (176)
28 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-22 2.8E-27 132.2 12.2 97 18-120 2-102 (175)
29 cd04121 Rab40 Rab40 subfamily. 99.9 1.6E-22 3.5E-27 133.3 12.8 99 16-120 5-107 (189)
30 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.4E-22 3.1E-27 131.0 12.3 102 19-127 1-102 (167)
31 cd04176 Rap2 Rap2 subgroup. T 99.9 1.9E-22 4E-27 129.6 12.6 105 17-127 1-108 (163)
32 cd04158 ARD1 ARD1 subfamily. 99.9 1.6E-22 3.4E-27 131.0 12.3 102 19-127 1-102 (169)
33 PTZ00369 Ras-like protein; Pro 99.9 2E-22 4.4E-27 132.7 12.8 101 15-121 3-106 (189)
34 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.4E-22 3.1E-27 134.7 12.0 97 18-120 1-106 (202)
35 KOG0098 GTPase Rab2, small G p 99.9 1.3E-22 2.8E-27 130.2 11.2 100 16-121 5-108 (216)
36 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.8E-22 3.8E-27 131.1 12.0 97 19-121 2-102 (170)
37 cd04175 Rap1 Rap1 subgroup. T 99.9 2.4E-22 5.2E-27 129.2 12.5 105 17-127 1-108 (164)
38 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.9E-22 6.4E-27 129.3 12.2 96 19-120 1-96 (164)
39 smart00178 SAR Sar1p-like memb 99.9 5E-22 1.1E-26 130.4 13.2 116 5-127 4-120 (184)
40 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4.4E-22 9.6E-27 132.2 12.4 96 18-119 1-101 (201)
41 cd04127 Rab27A Rab27a subfamil 99.9 4.1E-22 8.9E-27 129.9 12.0 100 16-121 3-116 (180)
42 cd04122 Rab14 Rab14 subfamily. 99.9 5.9E-22 1.3E-26 127.8 12.3 98 17-120 2-103 (166)
43 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 5.3E-22 1.1E-26 134.4 12.5 99 16-120 12-114 (232)
44 cd04138 H_N_K_Ras_like H-Ras/N 99.9 9.2E-22 2E-26 125.7 12.7 100 17-122 1-103 (162)
45 PLN03071 GTP-binding nuclear p 99.9 5.8E-22 1.3E-26 133.4 11.9 100 15-120 11-114 (219)
46 cd04154 Arl2 Arl2 subfamily. 99.9 8E-22 1.7E-26 128.0 12.2 106 15-127 12-117 (173)
47 cd04119 RJL RJL (RabJ-Like) su 99.9 1.1E-21 2.3E-26 126.1 12.4 98 18-121 1-102 (168)
48 cd04117 Rab15 Rab15 subfamily. 99.9 9.8E-22 2.1E-26 126.4 12.2 97 18-120 1-101 (161)
49 KOG0075 GTP-binding ADP-ribosy 99.9 8.9E-23 1.9E-27 126.5 6.8 121 1-127 1-124 (186)
50 KOG0087 GTPase Rab11/YPT3, sma 99.9 2.8E-22 6.1E-27 130.8 8.8 100 16-121 13-116 (222)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1E-21 2.2E-26 132.3 11.7 95 17-117 1-99 (222)
52 cd04116 Rab9 Rab9 subfamily. 99.9 2.1E-21 4.5E-26 125.5 12.6 101 15-121 3-107 (170)
53 cd00877 Ran Ran (Ras-related n 99.9 1.4E-21 2.9E-26 126.4 11.4 98 18-121 1-102 (166)
54 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.5E-21 5.4E-26 125.4 12.6 103 17-125 2-109 (170)
55 cd04111 Rab39 Rab39 subfamily. 99.9 1.7E-21 3.7E-26 130.4 12.1 99 17-121 2-105 (211)
56 cd04109 Rab28 Rab28 subfamily. 99.9 1.9E-21 4E-26 130.5 12.2 97 18-120 1-102 (215)
57 cd01867 Rab8_Rab10_Rab13_like 99.9 2.2E-21 4.9E-26 125.2 12.1 98 17-120 3-104 (167)
58 KOG0086 GTPase Rab4, small G p 99.9 9.3E-22 2E-26 122.9 9.7 98 17-120 9-110 (214)
59 cd04157 Arl6 Arl6 subfamily. 99.9 2.1E-21 4.5E-26 124.3 11.7 97 19-121 1-98 (162)
60 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.6E-21 5.6E-26 124.6 12.2 109 19-127 1-109 (167)
61 cd04103 Centaurin_gamma Centau 99.9 3.3E-21 7.1E-26 123.8 12.6 99 18-127 1-101 (158)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.7E-21 8E-26 123.4 12.9 100 16-121 1-103 (164)
63 cd01865 Rab3 Rab3 subfamily. 99.9 1.7E-21 3.7E-26 125.6 11.2 97 18-120 2-102 (165)
64 PLN00023 GTP-binding protein; 99.9 2.1E-21 4.6E-26 135.8 12.1 101 14-120 18-135 (334)
65 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4E-21 8.6E-26 123.8 12.5 98 17-120 2-103 (166)
66 cd04110 Rab35 Rab35 subfamily. 99.9 3.7E-21 8E-26 127.7 12.7 99 16-120 5-107 (199)
67 cd00879 Sar1 Sar1 subfamily. 99.9 6.7E-21 1.4E-25 125.3 13.8 115 6-127 7-122 (190)
68 cd04126 Rab20 Rab20 subfamily. 99.9 2.7E-21 5.8E-26 130.1 12.1 96 18-120 1-96 (220)
69 cd01871 Rac1_like Rac1-like su 99.9 3E-21 6.6E-26 125.7 12.0 97 17-119 1-101 (174)
70 KOG0074 GTP-binding ADP-ribosy 99.9 3.9E-21 8.5E-26 118.6 11.6 106 15-127 15-121 (185)
71 cd04124 RabL2 RabL2 subfamily. 99.9 5.1E-21 1.1E-25 123.0 12.2 96 18-119 1-100 (161)
72 cd04144 Ras2 Ras2 subfamily. 99.9 3.3E-21 7.1E-26 127.0 11.4 96 19-120 1-99 (190)
73 PF00071 Ras: Ras family; Int 99.9 4.6E-21 1E-25 122.9 11.8 98 19-122 1-102 (162)
74 smart00173 RAS Ras subfamily o 99.9 6.2E-21 1.3E-25 122.5 12.3 99 18-122 1-102 (164)
75 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.7E-21 1.5E-25 124.9 11.9 100 16-122 2-106 (183)
76 cd04143 Rhes_like Rhes_like su 99.9 7E-21 1.5E-25 130.2 12.3 97 18-120 1-100 (247)
77 cd01892 Miro2 Miro2 subfamily. 99.9 7.8E-21 1.7E-25 123.2 11.9 98 15-118 2-104 (169)
78 cd01864 Rab19 Rab19 subfamily. 99.9 9.2E-21 2E-25 122.0 12.2 99 16-120 2-104 (165)
79 KOG0091 GTPase Rab39, small G 99.9 9.7E-22 2.1E-26 123.9 7.3 100 17-122 8-112 (213)
80 cd04125 RabA_like RabA-like su 99.9 8.3E-21 1.8E-25 124.8 12.1 97 18-120 1-101 (188)
81 cd04106 Rab23_lke Rab23-like s 99.9 1E-20 2.3E-25 121.1 11.8 96 18-119 1-102 (162)
82 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1E-20 2.2E-25 121.1 11.6 102 19-127 1-103 (160)
83 cd01860 Rab5_related Rab5-rela 99.9 1.4E-20 3E-25 120.7 12.2 99 17-121 1-103 (163)
84 cd04177 RSR1 RSR1 subgroup. R 99.9 1.5E-20 3.2E-25 121.5 12.1 105 17-127 1-108 (168)
85 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-20 3.4E-25 120.0 12.0 102 19-127 1-102 (158)
86 cd01866 Rab2 Rab2 subfamily. 99.9 1.2E-20 2.7E-25 121.9 11.5 98 17-120 4-105 (168)
87 cd04159 Arl10_like Arl10-like 99.9 1.9E-20 4E-25 118.9 11.9 100 20-125 2-101 (159)
88 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-20 3.5E-25 120.5 11.7 99 18-120 1-104 (164)
89 cd01861 Rab6 Rab6 subfamily. 99.9 2.2E-20 4.8E-25 119.5 12.2 98 18-121 1-102 (161)
90 cd04140 ARHI_like ARHI subfami 99.9 2.2E-20 4.8E-25 120.4 12.2 96 18-119 2-100 (165)
91 cd04113 Rab4 Rab4 subfamily. 99.9 2.2E-20 4.8E-25 119.7 12.0 96 18-119 1-100 (161)
92 cd04151 Arl1 Arl1 subfamily. 99.9 1.6E-20 3.6E-25 120.1 11.4 102 19-127 1-102 (158)
93 cd01868 Rab11_like Rab11-like. 99.9 2.6E-20 5.6E-25 119.8 12.3 98 17-120 3-104 (165)
94 cd04112 Rab26 Rab26 subfamily. 99.9 2E-20 4.3E-25 123.4 11.9 97 18-120 1-102 (191)
95 cd04134 Rho3 Rho3 subfamily. 99.9 1.4E-20 3E-25 124.0 11.0 97 18-120 1-101 (189)
96 cd04118 Rab24 Rab24 subfamily. 99.8 2.7E-20 5.9E-25 122.7 12.3 97 18-120 1-102 (193)
97 PLN03110 Rab GTPase; Provision 99.8 3.2E-20 6.9E-25 124.7 12.6 99 16-120 11-113 (216)
98 cd04132 Rho4_like Rho4-like su 99.8 3.2E-20 6.9E-25 121.8 12.1 96 18-119 1-101 (187)
99 cd01862 Rab7 Rab7 subfamily. 99.8 5.5E-20 1.2E-24 118.7 12.0 98 18-121 1-102 (172)
100 cd01863 Rab18 Rab18 subfamily. 99.8 4.4E-20 9.6E-25 118.2 11.1 99 18-122 1-103 (161)
101 smart00175 RAB Rab subfamily o 99.8 5.3E-20 1.1E-24 117.9 11.4 98 18-121 1-102 (164)
102 KOG0093 GTPase Rab3, small G p 99.8 3.2E-20 6.9E-25 115.3 9.8 97 17-119 21-121 (193)
103 smart00176 RAN Ran (Ras-relate 99.8 2.6E-20 5.7E-25 123.8 10.0 92 23-120 1-96 (200)
104 cd04130 Wrch_1 Wrch-1 subfamil 99.8 6.6E-20 1.4E-24 119.0 11.1 96 18-119 1-100 (173)
105 PLN03108 Rab family protein; P 99.8 1.2E-19 2.6E-24 121.4 12.4 99 16-120 5-107 (210)
106 cd04147 Ras_dva Ras-dva subfam 99.8 1E-19 2.2E-24 120.7 11.6 98 19-122 1-101 (198)
107 cd04142 RRP22 RRP22 subfamily. 99.8 1.1E-19 2.4E-24 120.7 11.4 98 18-121 1-110 (198)
108 smart00174 RHO Rho (Ras homolo 99.8 1.3E-19 2.8E-24 117.5 11.1 95 20-120 1-99 (174)
109 cd04155 Arl3 Arl3 subfamily. 99.8 4.2E-19 9.1E-24 115.0 13.1 100 15-121 12-111 (173)
110 cd04146 RERG_RasL11_like RERG/ 99.8 1.9E-19 4.1E-24 115.9 11.2 96 19-120 1-100 (165)
111 cd04148 RGK RGK subfamily. Th 99.8 3.3E-19 7.1E-24 120.2 12.4 102 18-127 1-108 (221)
112 cd04123 Rab21 Rab21 subfamily. 99.8 4.1E-19 8.8E-24 113.4 12.2 97 18-120 1-101 (162)
113 PLN03118 Rab family protein; P 99.8 5.7E-19 1.2E-23 118.1 13.3 93 15-114 12-108 (211)
114 cd00154 Rab Rab family. Rab G 99.8 2.7E-19 6E-24 113.4 11.2 98 18-121 1-102 (159)
115 PTZ00132 GTP-binding nuclear p 99.8 3.2E-19 7E-24 119.6 11.9 100 14-119 6-109 (215)
116 cd04139 RalA_RalB RalA/RalB su 99.8 5E-19 1.1E-23 113.3 11.8 99 18-122 1-102 (164)
117 cd01870 RhoA_like RhoA-like su 99.8 3.1E-19 6.7E-24 115.8 10.9 96 18-119 2-101 (175)
118 cd01893 Miro1 Miro1 subfamily. 99.8 5.2E-19 1.1E-23 114.1 11.8 96 18-119 1-99 (166)
119 cd04135 Tc10 TC10 subfamily. 99.8 3.6E-19 7.7E-24 115.4 11.0 96 18-119 1-100 (174)
120 cd04137 RheB Rheb (Ras Homolog 99.8 6.4E-19 1.4E-23 114.9 12.0 99 18-122 2-103 (180)
121 cd04114 Rab30 Rab30 subfamily. 99.8 1.2E-18 2.5E-23 112.4 12.6 99 15-119 5-107 (169)
122 KOG0088 GTPase Rab21, small G 99.8 5.2E-20 1.1E-24 115.7 4.5 99 16-120 12-114 (218)
123 PF08477 Miro: Miro-like prote 99.8 3.9E-19 8.5E-24 108.7 7.9 93 19-117 1-99 (119)
124 cd01873 RhoBTB RhoBTB subfamil 99.8 2.7E-18 5.8E-23 113.8 11.5 100 17-119 2-116 (195)
125 cd00876 Ras Ras family. The R 99.8 3.2E-18 6.9E-23 109.1 11.5 98 19-122 1-101 (160)
126 cd00157 Rho Rho (Ras homology) 99.8 6.6E-18 1.4E-22 108.9 11.6 97 18-120 1-101 (171)
127 COG1100 GTPase SAR1 and relate 99.8 6.3E-18 1.4E-22 113.3 10.1 100 16-121 4-108 (219)
128 KOG0393 Ras-related small GTPa 99.8 7.6E-19 1.7E-23 115.0 5.1 100 16-121 3-107 (198)
129 KOG0097 GTPase Rab14, small G 99.8 7.7E-18 1.7E-22 104.3 9.3 102 15-122 9-114 (215)
130 KOG0395 Ras-related GTPase [Ge 99.8 7.4E-18 1.6E-22 111.6 9.8 102 16-123 2-106 (196)
131 KOG0072 GTP-binding ADP-ribosy 99.8 1.4E-18 3E-23 107.6 5.3 117 1-124 1-118 (182)
132 cd04129 Rho2 Rho2 subfamily. 99.7 3.3E-17 7.1E-22 107.7 11.6 97 17-119 1-101 (187)
133 KOG0081 GTPase Rab27, small G 99.7 3.2E-19 6.9E-24 112.2 1.3 100 17-122 9-121 (219)
134 KOG0083 GTPase Rab26/Rab37, sm 99.7 8.2E-19 1.8E-23 107.6 2.8 93 21-119 1-98 (192)
135 cd04105 SR_beta Signal recogni 99.7 6.3E-17 1.4E-21 107.8 11.1 95 19-120 2-102 (203)
136 KOG0077 Vesicle coat complex C 99.7 1.2E-17 2.7E-22 105.5 6.6 107 15-128 18-124 (193)
137 KOG4252 GTP-binding protein [S 99.7 6E-18 1.3E-22 108.4 2.0 101 15-121 18-122 (246)
138 cd01898 Obg Obg subfamily. Th 99.7 6.3E-16 1.4E-20 99.6 10.7 98 19-120 2-108 (170)
139 TIGR00231 small_GTP small GTP- 99.7 2.4E-15 5.1E-20 94.9 12.0 97 17-119 1-103 (161)
140 cd04171 SelB SelB subfamily. 99.7 1.5E-15 3.3E-20 97.1 10.1 82 19-103 2-86 (164)
141 PRK12299 obgE GTPase CgtA; Rev 99.7 3.1E-15 6.7E-20 106.3 12.4 100 17-120 158-265 (335)
142 cd01878 HflX HflX subfamily. 99.6 5E-15 1.1E-19 98.4 11.0 96 15-117 39-146 (204)
143 TIGR03156 GTP_HflX GTP-binding 99.6 8.1E-15 1.8E-19 104.8 12.0 93 16-115 188-292 (351)
144 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.2E-14 2.5E-19 106.7 12.9 98 15-118 201-307 (442)
145 cd01890 LepA LepA subfamily. 99.6 1.1E-14 2.3E-19 94.7 11.0 96 19-114 2-113 (179)
146 cd00882 Ras_like_GTPase Ras-li 99.6 4.5E-15 9.7E-20 92.6 8.7 89 22-117 1-94 (157)
147 cd01897 NOG NOG1 is a nucleola 99.6 2.2E-14 4.7E-19 92.3 11.9 95 19-119 2-109 (168)
148 KOG1673 Ras GTPases [General f 99.6 1.4E-15 3E-20 95.5 5.1 103 14-122 17-123 (205)
149 cd01881 Obg_like The Obg-like 99.6 1.1E-14 2.4E-19 94.1 9.6 93 22-120 1-109 (176)
150 cd01891 TypA_BipA TypA (tyrosi 99.6 3.2E-14 6.9E-19 94.0 11.8 99 18-117 3-113 (194)
151 PRK05291 trmE tRNA modificatio 99.6 3.5E-14 7.5E-19 104.5 12.6 97 15-114 213-317 (449)
152 PRK15494 era GTPase Era; Provi 99.6 2.4E-14 5.2E-19 102.1 11.3 94 14-112 49-150 (339)
153 TIGR02729 Obg_CgtA Obg family 99.6 4.5E-14 9.7E-19 100.2 12.2 101 16-120 156-267 (329)
154 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.4E-14 9.5E-19 90.8 10.6 81 19-105 2-87 (168)
155 TIGR02528 EutP ethanolamine ut 99.6 6.1E-15 1.3E-19 92.7 6.3 79 19-115 2-85 (142)
156 cd01896 DRG The developmentall 99.6 1E-13 2.2E-18 94.2 12.0 94 19-116 2-103 (233)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2E-13 4.2E-18 86.5 11.9 94 18-114 2-103 (157)
158 COG2229 Predicted GTPase [Gene 99.5 1.2E-13 2.6E-18 88.9 10.6 106 14-120 7-119 (187)
159 PRK03003 GTP-binding protein D 99.5 1.6E-13 3.5E-18 101.7 13.0 91 15-108 36-134 (472)
160 PF01926 MMR_HSR1: 50S ribosom 99.5 5E-13 1.1E-17 81.4 12.7 82 19-103 1-91 (116)
161 PRK00093 GTP-binding protein D 99.5 2.9E-13 6.2E-18 99.4 12.8 96 18-116 2-107 (435)
162 cd01879 FeoB Ferrous iron tran 99.5 1.6E-13 3.5E-18 87.2 9.8 81 22-108 1-91 (158)
163 cd00881 GTP_translation_factor 99.5 2.9E-13 6.2E-18 88.3 11.2 90 19-108 1-102 (189)
164 TIGR00436 era GTP-binding prot 99.5 3.4E-13 7.3E-18 93.5 12.0 87 19-108 2-96 (270)
165 PRK12296 obgE GTPase CgtA; Rev 99.5 2.3E-13 5E-18 100.7 11.7 99 15-117 157-266 (500)
166 PRK12297 obgE GTPase CgtA; Rev 99.5 3.3E-13 7.2E-18 98.4 12.4 98 18-119 159-267 (424)
167 KOG3883 Ras family small GTPas 99.5 4.4E-13 9.5E-18 84.2 11.1 107 16-126 8-119 (198)
168 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 2.4E-13 5.1E-18 92.0 10.6 81 19-105 1-90 (232)
169 TIGR03598 GTPase_YsxC ribosome 99.5 3E-13 6.5E-18 88.3 10.3 93 11-110 12-119 (179)
170 PRK04213 GTP-binding protein; 99.5 6.3E-14 1.4E-18 92.9 6.4 82 15-104 7-103 (201)
171 PRK11058 GTPase HflX; Provisio 99.5 6E-13 1.3E-17 97.3 11.9 96 18-117 198-305 (426)
172 PRK03003 GTP-binding protein D 99.5 5.7E-13 1.2E-17 98.8 11.8 99 16-118 210-319 (472)
173 PF09439 SRPRB: Signal recogni 99.5 9.7E-14 2.1E-18 90.5 6.7 98 17-122 3-107 (181)
174 PF02421 FeoB_N: Ferrous iron 99.5 4.2E-13 9.1E-18 85.7 9.3 85 18-106 1-93 (156)
175 cd01894 EngA1 EngA1 subfamily. 99.5 6.5E-13 1.4E-17 84.2 10.1 85 21-108 1-93 (157)
176 TIGR03594 GTPase_EngA ribosome 99.5 1.2E-12 2.6E-17 95.9 12.0 95 19-116 1-105 (429)
177 PRK12298 obgE GTPase CgtA; Rev 99.5 1.3E-12 2.9E-17 94.6 11.9 98 18-119 160-268 (390)
178 cd01889 SelB_euk SelB subfamil 99.5 6.3E-13 1.4E-17 87.7 9.4 92 18-109 1-109 (192)
179 PRK00454 engB GTP-binding prot 99.5 1.5E-12 3.2E-17 85.8 11.1 88 13-107 20-122 (196)
180 cd01895 EngA2 EngA2 subfamily. 99.5 3.2E-12 7E-17 82.0 11.9 91 17-110 2-103 (174)
181 PTZ00099 rab6; Provisional 99.4 7.9E-13 1.7E-17 86.3 8.6 76 46-121 3-82 (176)
182 cd04168 TetM_like Tet(M)-like 99.4 3E-12 6.6E-17 87.2 11.7 98 19-117 1-112 (237)
183 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 4.1E-13 9E-18 86.9 6.5 100 16-121 9-112 (216)
184 TIGR03594 GTPase_EngA ribosome 99.4 3.4E-12 7.3E-17 93.5 11.8 92 16-110 171-273 (429)
185 smart00275 G_alpha G protein a 99.4 2.3E-12 4.9E-17 92.0 9.8 73 55-127 171-253 (342)
186 TIGR00487 IF-2 translation ini 99.4 4.5E-12 9.7E-17 95.9 11.8 85 15-105 85-172 (587)
187 cd04166 CysN_ATPS CysN_ATPS su 99.4 3E-12 6.6E-17 85.6 9.8 87 19-105 1-114 (208)
188 TIGR01393 lepA GTP-binding pro 99.4 4.9E-12 1.1E-16 96.0 11.9 100 17-116 3-118 (595)
189 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5.1E-12 1.1E-16 83.7 10.4 100 18-119 1-112 (196)
190 cd04163 Era Era subfamily. Er 99.4 9.1E-12 2E-16 79.2 11.3 86 16-104 2-95 (168)
191 cd04169 RF3 RF3 subfamily. Pe 99.4 1.2E-11 2.5E-16 85.7 12.4 89 18-106 3-109 (267)
192 TIGR00491 aIF-2 translation in 99.4 3.4E-12 7.3E-17 96.5 10.3 92 17-110 4-114 (590)
193 cd00066 G-alpha G protein alph 99.4 3.8E-12 8.2E-17 90.1 10.0 73 55-127 148-230 (317)
194 cd04167 Snu114p Snu114p subfam 99.4 1.2E-11 2.6E-16 83.0 11.8 98 19-117 2-119 (213)
195 cd04170 EF-G_bact Elongation f 99.4 8.6E-12 1.9E-16 86.4 11.4 90 19-108 1-104 (268)
196 CHL00189 infB translation init 99.4 7.7E-12 1.7E-16 96.3 11.9 85 15-105 242-332 (742)
197 PRK05306 infB translation init 99.4 1.3E-11 2.9E-16 95.7 12.5 84 15-104 288-373 (787)
198 PRK09518 bifunctional cytidyla 99.4 9.2E-12 2E-16 96.3 11.6 91 17-111 450-552 (712)
199 PRK00089 era GTPase Era; Revie 99.4 9.9E-12 2.1E-16 87.0 10.7 84 16-103 4-96 (292)
200 PRK12317 elongation factor 1-a 99.4 7.5E-12 1.6E-16 91.8 10.0 90 14-103 3-119 (425)
201 PF04548 AIG1: AIG1 family; I 99.4 3.1E-11 6.7E-16 81.0 11.9 102 18-121 1-114 (212)
202 COG1163 DRG Predicted GTPase [ 99.4 6.2E-12 1.3E-16 87.6 8.6 99 15-117 61-167 (365)
203 COG0486 ThdF Predicted GTPase 99.3 1.3E-11 2.8E-16 89.6 10.4 87 15-104 215-309 (454)
204 PRK09518 bifunctional cytidyla 99.3 2.9E-11 6.3E-16 93.6 13.0 87 15-104 273-367 (712)
205 cd01888 eIF2_gamma eIF2-gamma 99.3 1.3E-11 2.8E-16 82.3 9.4 85 18-104 1-119 (203)
206 PRK13351 elongation factor G; 99.3 2.6E-11 5.6E-16 93.6 11.9 99 15-113 6-118 (687)
207 cd01886 EF-G Elongation factor 99.3 4.5E-11 9.7E-16 82.9 11.9 87 19-105 1-101 (270)
208 PRK04004 translation initiatio 99.3 1.3E-11 2.8E-16 93.5 9.9 95 15-111 4-117 (586)
209 PRK00093 GTP-binding protein D 99.3 3E-11 6.5E-16 88.8 11.6 91 16-110 172-274 (435)
210 PRK15467 ethanolamine utilizat 99.3 9.6E-12 2.1E-16 79.8 7.8 82 19-117 3-88 (158)
211 cd01899 Ygr210 Ygr210 subfamil 99.3 4.8E-11 1E-15 84.4 12.0 84 20-103 1-111 (318)
212 TIGR00475 selB selenocysteine- 99.3 1.8E-11 3.8E-16 92.8 9.9 90 18-110 1-95 (581)
213 COG1160 Predicted GTPases [Gen 99.3 1.8E-11 3.8E-16 88.7 9.4 95 18-115 4-109 (444)
214 PRK09554 feoB ferrous iron tra 99.3 4.2E-11 9.1E-16 93.1 12.1 87 16-106 2-100 (772)
215 PRK09602 translation-associate 99.3 5.6E-11 1.2E-15 86.3 12.0 81 18-102 2-113 (396)
216 PRK10218 GTP-binding protein; 99.3 4.7E-11 1E-15 90.7 12.0 90 16-105 4-105 (607)
217 cd01885 EF2 EF2 (for archaea a 99.3 7.6E-11 1.6E-15 79.6 11.7 91 19-109 2-114 (222)
218 COG1159 Era GTPase [General fu 99.3 1.4E-11 3.1E-16 85.0 8.3 85 16-103 5-97 (298)
219 KOG4423 GTP-binding protein-li 99.3 1.4E-14 3.1E-19 93.4 -6.1 103 16-124 24-131 (229)
220 TIGR01394 TypA_BipA GTP-bindin 99.3 5E-11 1.1E-15 90.4 11.9 100 19-119 3-114 (594)
221 PF00009 GTP_EFTU: Elongation 99.3 5E-11 1.1E-15 78.5 10.5 91 16-106 2-108 (188)
222 cd00880 Era_like Era (E. coli 99.3 5.7E-11 1.2E-15 74.7 10.3 87 22-111 1-95 (163)
223 KOG0090 Signal recognition par 99.3 1.3E-11 2.7E-16 81.5 7.2 100 16-122 37-140 (238)
224 TIGR00483 EF-1_alpha translati 99.3 1.6E-11 3.5E-16 90.1 8.6 93 14-106 4-123 (426)
225 PRK05433 GTP-binding protein L 99.3 7.5E-11 1.6E-15 89.7 12.4 100 16-115 6-121 (600)
226 KOG1707 Predicted Ras related/ 99.3 1.9E-11 4.2E-16 90.5 8.6 100 15-120 7-109 (625)
227 COG3596 Predicted GTPase [Gene 99.3 1.4E-11 3.1E-16 84.2 6.6 90 12-105 34-131 (296)
228 cd01876 YihA_EngB The YihA (En 99.3 7.8E-11 1.7E-15 75.1 9.3 92 19-117 1-109 (170)
229 cd04104 p47_IIGP_like p47 (47- 99.3 5.6E-11 1.2E-15 78.9 8.7 78 17-100 1-89 (197)
230 PRK00741 prfC peptide chain re 99.2 5.1E-11 1.1E-15 89.3 9.2 91 15-105 8-116 (526)
231 cd01884 EF_Tu EF-Tu subfamily. 99.2 1.1E-10 2.5E-15 77.3 9.6 89 16-104 1-101 (195)
232 PTZ00258 GTP-binding protein; 99.2 2.6E-10 5.7E-15 82.4 11.9 84 15-102 19-126 (390)
233 cd01853 Toc34_like Toc34-like 99.2 4.7E-10 1E-14 77.0 12.6 86 15-103 29-126 (249)
234 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4.7E-10 1E-14 78.7 12.7 85 15-102 36-129 (313)
235 KOG1489 Predicted GTP-binding 99.2 1.1E-10 2.3E-15 81.3 9.0 100 16-119 195-305 (366)
236 cd01883 EF1_alpha Eukaryotic e 99.2 1E-10 2.2E-15 78.8 8.4 86 19-104 1-113 (219)
237 TIGR00503 prfC peptide chain r 99.2 2.7E-10 5.9E-15 85.5 11.4 90 15-104 9-116 (527)
238 KOG1423 Ras-like GTPase ERA [C 99.2 1.6E-10 3.6E-15 80.2 9.0 88 15-105 70-169 (379)
239 KOG1191 Mitochondrial GTPase [ 99.2 2.4E-10 5.3E-15 83.4 10.2 100 15-117 266-376 (531)
240 TIGR00484 EF-G translation elo 99.2 3.5E-10 7.5E-15 87.5 11.7 94 15-108 8-115 (689)
241 cd01900 YchF YchF subfamily. 99.2 1.7E-10 3.6E-15 80.0 8.9 80 20-103 1-104 (274)
242 COG1084 Predicted GTPase [Gene 99.2 6.4E-10 1.4E-14 77.8 11.3 100 15-118 166-276 (346)
243 TIGR03680 eif2g_arch translati 99.2 1.5E-10 3.3E-15 84.5 8.3 88 14-104 1-116 (406)
244 cd01850 CDC_Septin CDC/Septin. 99.2 3.3E-10 7.1E-15 78.9 9.6 61 16-78 3-73 (276)
245 PRK09601 GTP-binding protein Y 99.2 3.8E-10 8.3E-15 80.8 10.1 82 18-103 3-108 (364)
246 TIGR00437 feoB ferrous iron tr 99.1 6.8E-10 1.5E-14 84.4 10.5 76 24-105 1-86 (591)
247 COG2262 HflX GTPases [General 99.1 6.7E-10 1.4E-14 79.7 9.6 91 15-110 190-290 (411)
248 PRK12735 elongation factor Tu; 99.1 1.1E-09 2.4E-14 79.7 10.3 91 14-104 9-111 (396)
249 TIGR00485 EF-Tu translation el 99.1 9.6E-10 2.1E-14 80.1 9.9 91 14-104 9-111 (394)
250 PRK12739 elongation factor G; 99.1 2.1E-09 4.5E-14 83.2 11.8 92 15-106 6-111 (691)
251 PRK12736 elongation factor Tu; 99.1 1.5E-09 3.3E-14 79.0 10.4 91 14-104 9-111 (394)
252 TIGR00490 aEF-2 translation el 99.1 1E-09 2.3E-14 85.2 9.7 89 16-104 18-122 (720)
253 PRK04000 translation initiatio 99.1 5.9E-10 1.3E-14 81.5 7.9 89 13-104 5-121 (411)
254 CHL00071 tufA elongation facto 99.1 3.7E-09 8E-14 77.4 11.4 91 14-104 9-111 (409)
255 PRK05124 cysN sulfate adenylyl 99.1 1.5E-09 3.2E-14 80.7 9.4 91 14-104 24-143 (474)
256 COG1160 Predicted GTPases [Gen 99.1 1.7E-09 3.6E-14 78.6 9.4 88 17-107 178-276 (444)
257 PLN03126 Elongation factor Tu; 99.1 2.7E-09 5.8E-14 79.3 10.6 92 14-105 78-181 (478)
258 PRK05506 bifunctional sulfate 99.0 2.1E-09 4.6E-14 82.4 10.1 93 12-104 19-140 (632)
259 PF10662 PduV-EutP: Ethanolami 99.0 1.8E-09 3.8E-14 67.9 7.7 72 18-105 2-77 (143)
260 COG0370 FeoB Fe2+ transport sy 99.0 4.3E-09 9.3E-14 79.7 10.8 91 16-110 2-100 (653)
261 PRK10512 selenocysteinyl-tRNA- 99.0 3.4E-09 7.4E-14 80.9 10.5 82 19-103 2-86 (614)
262 TIGR02034 CysN sulfate adenyly 99.0 3.3E-09 7.2E-14 77.5 9.8 87 18-104 1-116 (406)
263 PRK00049 elongation factor Tu; 99.0 3.4E-09 7.5E-14 77.2 9.7 91 14-104 9-111 (396)
264 COG0012 Predicted GTPase, prob 99.0 3.5E-09 7.5E-14 75.4 9.4 85 17-105 2-111 (372)
265 TIGR00993 3a0901s04IAP86 chlor 99.0 1.3E-08 2.8E-13 77.5 11.8 101 17-120 118-233 (763)
266 PTZ00141 elongation factor 1- 99.0 4.1E-09 8.9E-14 77.8 8.9 91 14-104 4-121 (446)
267 cd04165 GTPBP1_like GTPBP1-lik 99.0 1E-08 2.2E-13 69.5 10.0 87 19-105 1-123 (224)
268 PLN03127 Elongation factor Tu; 99.0 1.5E-08 3.3E-13 74.8 11.6 91 14-104 58-160 (447)
269 PF05049 IIGP: Interferon-indu 99.0 5.5E-09 1.2E-13 75.1 9.0 85 14-100 32-123 (376)
270 COG0536 Obg Predicted GTPase [ 99.0 8.7E-09 1.9E-13 72.6 9.7 97 18-118 160-267 (369)
271 PRK00007 elongation factor G; 99.0 1.5E-08 3.2E-13 78.6 11.6 92 15-106 8-113 (693)
272 KOG0082 G-protein alpha subuni 98.9 8E-09 1.7E-13 73.5 9.0 72 55-126 182-263 (354)
273 PRK12740 elongation factor G; 98.9 1.3E-08 2.8E-13 78.6 10.7 88 23-110 1-102 (668)
274 PLN00043 elongation factor 1-a 98.9 7.2E-09 1.6E-13 76.6 8.6 90 14-103 4-120 (447)
275 TIGR00092 GTP-binding protein 98.9 1.8E-08 3.9E-13 72.4 10.3 83 18-103 3-109 (368)
276 COG0218 Predicted GTPase [Gene 98.9 3.1E-08 6.6E-13 65.3 10.5 98 12-116 19-133 (200)
277 smart00010 small_GTPase Small 98.9 5.1E-09 1.1E-13 63.8 6.4 22 18-39 1-22 (124)
278 KOG1486 GTP-binding protein DR 98.9 1.3E-08 2.8E-13 69.4 7.5 98 15-117 60-166 (364)
279 KOG1491 Predicted GTP-binding 98.8 2.1E-08 4.5E-13 70.7 7.9 86 16-105 19-128 (391)
280 PF00350 Dynamin_N: Dynamin fa 98.8 5.7E-08 1.2E-12 62.5 9.0 48 68-115 101-152 (168)
281 KOG3886 GTP-binding protein [S 98.8 3.7E-09 8E-14 71.0 3.2 102 16-120 3-113 (295)
282 COG5256 TEF1 Translation elong 98.8 1.1E-08 2.4E-13 73.6 5.3 92 14-105 4-122 (428)
283 cd01882 BMS1 Bms1. Bms1 is an 98.8 1.7E-07 3.7E-12 63.5 10.8 82 15-106 37-118 (225)
284 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 3.6E-08 7.7E-13 62.1 6.6 53 19-78 85-138 (141)
285 PRK07560 elongation factor EF- 98.8 1.2E-07 2.6E-12 74.0 10.7 91 16-106 19-125 (731)
286 PLN00116 translation elongatio 98.7 8.3E-08 1.8E-12 75.9 8.8 92 15-106 17-136 (843)
287 PF00735 Septin: Septin; Inte 98.7 3.5E-07 7.5E-12 63.9 10.7 62 16-77 3-72 (281)
288 PTZ00416 elongation factor 2; 98.7 1.3E-07 2.8E-12 74.7 9.4 91 16-106 18-130 (836)
289 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.2E-07 2.5E-12 60.7 6.8 24 16-39 101-124 (157)
290 PF05783 DLIC: Dynein light in 98.6 3.9E-07 8.5E-12 67.7 9.8 94 15-117 23-127 (472)
291 cd04178 Nucleostemin_like Nucl 98.6 1.3E-07 2.8E-12 61.6 6.1 54 16-77 116-171 (172)
292 cd01856 YlqF YlqF. Proteins o 98.6 2.7E-07 5.9E-12 59.9 6.8 54 16-78 114-170 (171)
293 cd01859 MJ1464 MJ1464. This f 98.6 3.3E-07 7.3E-12 58.4 6.9 55 16-77 100-155 (156)
294 KOG3905 Dynein light intermedi 98.6 5.8E-07 1.3E-11 63.5 8.3 96 16-120 51-157 (473)
295 KOG1707 Predicted Ras related/ 98.5 6.9E-07 1.5E-11 66.9 8.8 97 14-118 422-522 (625)
296 cd01851 GBP Guanylate-binding 98.5 1.8E-06 3.9E-11 58.5 10.3 90 15-105 5-105 (224)
297 TIGR03596 GTPase_YlqF ribosome 98.5 4.8E-07 1E-11 63.1 6.9 57 16-78 117-173 (276)
298 cd01855 YqeH YqeH. YqeH is an 98.5 3.9E-07 8.5E-12 60.0 5.8 24 16-39 126-149 (190)
299 PRK09563 rbgA GTPase YlqF; Rev 98.5 6.5E-07 1.4E-11 62.8 7.2 58 16-79 120-177 (287)
300 KOG0410 Predicted GTP binding 98.5 1.1E-06 2.3E-11 62.0 7.4 88 17-109 178-275 (410)
301 COG0480 FusA Translation elong 98.4 2.7E-06 5.8E-11 65.9 10.2 100 15-114 8-122 (697)
302 KOG2655 Septin family protein 98.4 5.5E-06 1.2E-10 59.4 10.8 60 16-77 20-88 (366)
303 COG1161 Predicted GTPases [Gen 98.4 7.8E-07 1.7E-11 63.3 6.0 57 15-78 130-187 (322)
304 cd01849 YlqF_related_GTPase Yl 98.4 1.4E-06 3.1E-11 55.6 6.7 57 15-77 98-154 (155)
305 COG5019 CDC3 Septin family pro 98.4 1.1E-05 2.4E-10 57.7 11.0 64 14-77 20-91 (373)
306 KOG0705 GTPase-activating prot 98.3 1.1E-06 2.5E-11 65.6 5.7 94 15-119 28-123 (749)
307 PRK12288 GTPase RsgA; Reviewed 98.3 2.4E-06 5.1E-11 61.4 6.4 20 20-39 208-227 (347)
308 KOG0099 G protein subunit Galp 98.3 3.3E-06 7.1E-11 58.1 6.4 49 55-103 189-237 (379)
309 TIGR00157 ribosome small subun 98.3 6E-06 1.3E-10 56.7 7.6 22 18-39 121-142 (245)
310 KOG0462 Elongation factor-type 98.3 7.8E-06 1.7E-10 61.2 8.4 102 16-117 59-174 (650)
311 COG4108 PrfC Peptide chain rel 98.2 1.1E-05 2.5E-10 58.9 8.7 92 16-107 11-120 (528)
312 PRK12289 GTPase RsgA; Reviewed 98.2 6E-06 1.3E-10 59.5 7.1 21 19-39 174-194 (352)
313 COG0532 InfB Translation initi 98.2 1.1E-05 2.4E-10 60.0 8.2 87 16-106 4-93 (509)
314 PF03193 DUF258: Protein of un 98.2 1.9E-06 4.2E-11 55.4 3.8 22 18-39 36-57 (161)
315 COG5192 BMS1 GTP-binding prote 98.2 8.1E-06 1.8E-10 61.7 7.4 80 15-104 67-146 (1077)
316 smart00053 DYNc Dynamin, GTPas 98.2 5.7E-05 1.2E-09 51.8 11.0 24 16-39 25-48 (240)
317 KOG1487 GTP-binding protein DR 98.2 4.1E-06 8.9E-11 57.6 5.2 89 16-110 58-155 (358)
318 PTZ00327 eukaryotic translatio 98.2 8.1E-06 1.8E-10 60.7 7.2 93 12-104 29-153 (460)
319 TIGR02836 spore_IV_A stage IV 98.1 7.9E-05 1.7E-09 54.7 11.4 26 15-40 15-40 (492)
320 KOG0468 U5 snRNP-specific prot 98.1 3.5E-05 7.5E-10 59.2 9.9 95 15-109 126-238 (971)
321 COG1618 Predicted nucleotide k 98.1 2.3E-05 5E-10 50.3 7.7 55 15-76 3-59 (179)
322 KOG1547 Septin CDC10 and relat 98.1 1.8E-05 3.8E-10 54.0 7.4 62 16-77 45-113 (336)
323 TIGR03597 GTPase_YqeH ribosome 98.1 7E-06 1.5E-10 59.4 5.9 23 17-39 154-176 (360)
324 PRK14845 translation initiatio 98.1 1.4E-05 3E-10 64.4 8.1 81 28-110 472-571 (1049)
325 KOG3887 Predicted small GTPase 98.1 5.2E-06 1.1E-10 56.6 4.8 84 17-103 27-113 (347)
326 KOG1145 Mitochondrial translat 98.1 2.1E-05 4.6E-10 59.0 8.2 87 16-105 152-238 (683)
327 COG1116 TauB ABC-type nitrate/ 98.1 1.5E-05 3.2E-10 54.4 6.6 21 19-39 31-51 (248)
328 PF03029 ATP_bind_1: Conserved 98.1 4.7E-06 1E-10 57.0 4.1 38 69-106 92-137 (238)
329 KOG0461 Selenocysteine-specifi 98.1 2.5E-05 5.5E-10 55.8 7.4 97 15-111 5-113 (522)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.2E-05 2.6E-10 56.4 5.9 22 18-39 162-183 (287)
331 COG1217 TypA Predicted membran 98.1 2.1E-05 4.6E-10 58.0 7.1 88 17-104 5-104 (603)
332 PRK13796 GTPase YqeH; Provisio 98.0 1.8E-05 3.8E-10 57.4 6.3 24 16-39 159-182 (365)
333 COG4917 EutP Ethanolamine util 98.0 1E-05 2.2E-10 49.7 4.2 22 18-39 2-23 (148)
334 PRK00098 GTPase RsgA; Reviewed 97.9 3.3E-05 7.2E-10 54.5 6.3 23 17-39 164-186 (298)
335 PF00503 G-alpha: G-protein al 97.9 7.7E-05 1.7E-09 54.5 7.5 73 55-127 222-305 (389)
336 PRK13768 GTPase; Provisional 97.9 7.2E-05 1.6E-09 51.6 7.0 39 69-107 98-144 (253)
337 KOG0458 Elongation factor 1 al 97.9 2.6E-05 5.7E-10 58.6 5.0 91 14-104 174-291 (603)
338 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00023 5E-09 46.6 8.8 25 15-39 23-47 (177)
339 KOG0447 Dynamin-like GTP bindi 97.9 0.00024 5.2E-09 53.8 9.6 82 16-99 307-456 (980)
340 PF13207 AAA_17: AAA domain; P 97.8 1.8E-05 3.9E-10 48.2 3.3 21 19-39 1-21 (121)
341 KOG2423 Nucleolar GTPase [Gene 97.8 1.5E-05 3.3E-10 57.8 3.2 89 7-106 296-389 (572)
342 COG4619 ABC-type uncharacteriz 97.8 5.1E-05 1.1E-09 49.3 5.2 55 19-91 31-85 (223)
343 KOG1954 Endocytosis/signaling 97.8 0.00038 8.3E-09 50.4 9.9 100 16-121 57-211 (532)
344 COG1136 SalX ABC-type antimicr 97.8 4.2E-05 9.2E-10 51.8 4.8 21 19-39 33-53 (226)
345 PRK08118 topology modulation p 97.8 2.1E-05 4.6E-10 51.0 3.3 22 18-39 2-23 (167)
346 COG0563 Adk Adenylate kinase a 97.8 2.1E-05 4.5E-10 51.6 3.3 22 18-39 1-22 (178)
347 KOG1144 Translation initiation 97.8 5.2E-05 1.1E-09 58.9 5.6 86 16-103 474-575 (1064)
348 COG1126 GlnQ ABC-type polar am 97.8 5.3E-05 1.1E-09 50.9 5.0 22 18-39 29-50 (240)
349 COG3839 MalK ABC-type sugar tr 97.8 3.9E-05 8.4E-10 54.9 4.5 20 20-39 32-51 (338)
350 PF03266 NTPase_1: NTPase; In 97.8 8.1E-05 1.8E-09 48.3 5.6 22 19-40 1-22 (168)
351 COG1162 Predicted GTPases [Gen 97.8 4.9E-05 1.1E-09 53.4 4.6 21 19-39 166-186 (301)
352 COG1134 TagH ABC-type polysacc 97.8 5E-05 1.1E-09 51.7 4.5 44 18-76 54-97 (249)
353 PRK07261 topology modulation p 97.7 3E-05 6.6E-10 50.4 3.3 21 19-39 2-22 (171)
354 TIGR00960 3a0501s02 Type II (G 97.7 7.9E-05 1.7E-09 50.0 5.0 23 17-39 29-51 (216)
355 COG4525 TauB ABC-type taurine 97.7 7.2E-05 1.6E-09 49.8 4.6 21 19-39 33-53 (259)
356 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 7.9E-05 1.7E-09 50.0 5.0 24 16-39 29-52 (218)
357 COG1120 FepC ABC-type cobalami 97.7 6E-05 1.3E-09 52.0 4.4 22 18-39 29-50 (258)
358 COG3842 PotA ABC-type spermidi 97.7 6.4E-05 1.4E-09 54.1 4.7 20 20-39 34-53 (352)
359 PF00005 ABC_tran: ABC transpo 97.7 5E-05 1.1E-09 47.2 3.7 24 16-39 10-33 (137)
360 cd03261 ABC_Org_Solvent_Resist 97.7 9.3E-05 2E-09 50.3 5.2 24 16-39 25-48 (235)
361 TIGR01166 cbiO cobalt transpor 97.7 9.2E-05 2E-09 48.7 5.0 23 17-39 18-40 (190)
362 cd03226 ABC_cobalt_CbiO_domain 97.7 0.0001 2.2E-09 49.1 5.1 24 16-39 25-48 (205)
363 cd03225 ABC_cobalt_CbiO_domain 97.7 0.00011 2.4E-09 49.0 5.3 24 16-39 26-49 (211)
364 cd03259 ABC_Carb_Solutes_like 97.7 0.00011 2.3E-09 49.3 5.2 23 17-39 26-48 (213)
365 cd03258 ABC_MetN_methionine_tr 97.7 0.00012 2.5E-09 49.7 5.3 24 16-39 30-53 (233)
366 PRK11629 lolD lipoprotein tran 97.7 0.00011 2.4E-09 49.9 5.2 23 17-39 35-57 (233)
367 cd03292 ABC_FtsE_transporter F 97.7 0.00012 2.6E-09 49.0 5.3 23 17-39 27-49 (214)
368 cd03266 ABC_NatA_sodium_export 97.7 0.00013 2.7E-09 49.0 5.3 24 16-39 30-53 (218)
369 COG0481 LepA Membrane GTPase L 97.7 0.00017 3.7E-09 53.6 6.2 102 19-120 11-128 (603)
370 TIGR02868 CydC thiol reductant 97.7 9.4E-05 2E-09 55.9 5.1 25 15-39 359-383 (529)
371 PRK10751 molybdopterin-guanine 97.7 0.00018 3.9E-09 46.9 5.7 24 16-39 5-28 (173)
372 cd03224 ABC_TM1139_LivF_branch 97.7 0.00012 2.6E-09 49.2 5.2 24 16-39 25-48 (222)
373 cd03229 ABC_Class3 This class 97.6 0.00014 3.1E-09 47.4 5.3 24 16-39 25-48 (178)
374 TIGR02673 FtsE cell division A 97.6 0.00014 2.9E-09 48.7 5.3 24 16-39 27-50 (214)
375 KOG1490 GTP-binding protein CR 97.6 8.9E-05 1.9E-09 55.3 4.6 86 14-103 165-259 (620)
376 TIGR02315 ABC_phnC phosphonate 97.6 0.00013 2.7E-09 49.8 5.1 23 17-39 28-50 (243)
377 TIGR03608 L_ocin_972_ABC putat 97.6 0.00015 3.2E-09 48.3 5.3 23 17-39 24-46 (206)
378 cd03257 ABC_NikE_OppD_transpor 97.6 0.00013 2.9E-09 49.2 5.2 24 16-39 30-53 (228)
379 TIGR02211 LolD_lipo_ex lipopro 97.6 0.00014 3E-09 49.0 5.2 24 16-39 30-53 (221)
380 COG3638 ABC-type phosphate/pho 97.6 9E-05 2E-09 50.4 4.2 23 17-39 30-52 (258)
381 COG0410 LivF ABC-type branched 97.6 0.00011 2.4E-09 49.7 4.7 21 19-39 31-51 (237)
382 PF13671 AAA_33: AAA domain; P 97.6 5.2E-05 1.1E-09 47.4 2.9 20 20-39 2-21 (143)
383 COG1125 OpuBA ABC-type proline 97.6 9.5E-05 2.1E-09 51.0 4.3 21 19-39 29-49 (309)
384 cd03263 ABC_subfamily_A The AB 97.6 0.00014 3.1E-09 48.8 5.2 23 17-39 28-50 (220)
385 COG2884 FtsE Predicted ATPase 97.6 0.00012 2.7E-09 48.3 4.7 21 19-39 30-50 (223)
386 cd03218 ABC_YhbG The ABC trans 97.6 0.00015 3.2E-09 49.1 5.3 24 16-39 25-48 (232)
387 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.00014 3.1E-09 48.9 5.2 23 17-39 30-52 (220)
388 PF13555 AAA_29: P-loop contai 97.6 7.4E-05 1.6E-09 40.4 3.0 21 19-39 25-45 (62)
389 cd03265 ABC_DrrA DrrA is the A 97.6 0.00015 3.2E-09 48.9 5.2 24 16-39 25-48 (220)
390 cd03262 ABC_HisP_GlnQ_permease 97.6 0.00015 3.2E-09 48.5 5.2 24 16-39 25-48 (213)
391 cd03215 ABC_Carb_Monos_II This 97.6 0.00015 3.3E-09 47.4 5.1 24 16-39 25-48 (182)
392 TIGR01189 ccmA heme ABC export 97.6 0.00018 3.8E-09 47.7 5.4 24 16-39 25-48 (198)
393 PRK13543 cytochrome c biogenes 97.6 0.00015 3.3E-09 48.6 5.1 23 17-39 37-59 (214)
394 PRK10908 cell division protein 97.6 0.00017 3.8E-09 48.6 5.4 24 16-39 27-50 (222)
395 cd03256 ABC_PhnC_transporter A 97.6 0.00016 3.4E-09 49.3 5.2 24 16-39 26-49 (241)
396 cd03269 ABC_putative_ATPase Th 97.6 0.00014 3.1E-09 48.5 4.9 24 16-39 25-48 (210)
397 PRK13541 cytochrome c biogenes 97.6 0.00014 3.1E-09 48.0 4.8 24 16-39 25-48 (195)
398 KOG0085 G protein subunit Galp 97.6 3.6E-05 7.9E-10 52.3 2.0 26 14-39 36-61 (359)
399 PRK11248 tauB taurine transpor 97.6 0.00016 3.5E-09 49.9 5.2 24 16-39 26-49 (255)
400 PRK13540 cytochrome c biogenes 97.6 0.00015 3.2E-09 48.2 4.8 24 16-39 26-49 (200)
401 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00018 3.9E-09 48.9 5.3 24 16-39 26-49 (236)
402 cd03219 ABC_Mj1267_LivG_branch 97.6 0.00016 3.4E-09 49.1 5.0 23 17-39 26-48 (236)
403 cd03301 ABC_MalK_N The N-termi 97.6 0.00018 4E-09 48.1 5.2 24 16-39 25-48 (213)
404 cd03216 ABC_Carb_Monos_I This 97.6 0.0002 4.3E-09 46.1 5.1 24 16-39 25-48 (163)
405 cd03296 ABC_CysA_sulfate_impor 97.6 0.00018 3.8E-09 49.1 5.2 22 18-39 29-50 (239)
406 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 0.00012 2.6E-09 57.1 4.8 25 15-39 477-501 (686)
407 COG2274 SunT ABC-type bacterio 97.6 8.6E-05 1.9E-09 58.0 4.0 40 15-69 497-536 (709)
408 PRK13538 cytochrome c biogenes 97.6 0.00021 4.6E-09 47.6 5.4 23 17-39 27-49 (204)
409 PRK09435 membrane ATPase/prote 97.6 0.001 2.2E-08 47.7 9.1 25 15-39 54-78 (332)
410 COG2895 CysN GTPases - Sulfate 97.6 0.00027 5.8E-09 50.8 6.0 89 14-102 3-120 (431)
411 PRK10584 putative ABC transpor 97.6 0.00018 3.8E-09 48.7 5.0 24 16-39 35-58 (228)
412 cd03260 ABC_PstB_phosphate_tra 97.6 0.00018 3.9E-09 48.6 5.0 24 16-39 25-48 (227)
413 PRK10895 lipopolysaccharide AB 97.6 0.00019 4.2E-09 48.9 5.2 24 16-39 28-51 (241)
414 COG4559 ABC-type hemin transpo 97.6 9.8E-05 2.1E-09 49.6 3.6 22 18-39 28-49 (259)
415 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00021 4.5E-09 47.8 5.3 24 16-39 23-46 (211)
416 PRK14250 phosphate ABC transpo 97.6 0.0002 4.4E-09 48.9 5.3 22 18-39 30-51 (241)
417 cd03264 ABC_drug_resistance_li 97.6 0.00016 3.4E-09 48.4 4.6 23 16-39 25-47 (211)
418 COG4615 PvdE ABC-type sideroph 97.6 0.00017 3.8E-09 52.6 5.0 81 20-118 352-432 (546)
419 COG3840 ThiQ ABC-type thiamine 97.6 0.00019 4.1E-09 47.3 4.7 23 17-39 25-47 (231)
420 TIGR01188 drrA daunorubicin re 97.5 0.00019 4.2E-09 50.7 5.2 24 16-39 18-41 (302)
421 TIGR03410 urea_trans_UrtE urea 97.5 0.00019 4.2E-09 48.5 5.0 25 15-39 24-48 (230)
422 PRK13638 cbiO cobalt transport 97.5 0.00019 4.1E-09 49.9 5.1 23 17-39 27-49 (271)
423 cd03214 ABC_Iron-Siderophores_ 97.5 0.00024 5.1E-09 46.5 5.3 24 16-39 24-47 (180)
424 COG1131 CcmA ABC-type multidru 97.5 0.00017 3.7E-09 50.8 4.8 21 19-39 33-53 (293)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0012 2.7E-08 41.6 8.3 23 17-39 26-48 (144)
426 PRK06217 hypothetical protein; 97.5 9.5E-05 2.1E-09 48.5 3.3 22 18-39 2-23 (183)
427 PRK15056 manganese/iron transp 97.5 0.0002 4.2E-09 49.9 5.1 23 17-39 33-55 (272)
428 cd03246 ABCC_Protease_Secretio 97.5 0.00028 6.1E-09 45.8 5.5 23 17-39 28-50 (173)
429 KOG0464 Elongation factor G [T 97.5 0.0001 2.2E-09 54.1 3.6 92 16-107 36-141 (753)
430 PRK11176 lipid transporter ATP 97.5 0.00014 3.1E-09 55.6 4.7 25 15-39 367-391 (582)
431 TIGR01184 ntrCD nitrate transp 97.5 0.00022 4.8E-09 48.4 5.1 24 16-39 10-33 (230)
432 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00027 5.8E-09 45.9 5.3 24 16-39 25-48 (173)
433 PF13521 AAA_28: AAA domain; P 97.5 6.4E-05 1.4E-09 48.3 2.4 22 19-40 1-22 (163)
434 cd03235 ABC_Metallic_Cations A 97.5 0.00019 4.1E-09 48.0 4.7 24 16-39 24-47 (213)
435 PRK11124 artP arginine transpo 97.5 0.00024 5.2E-09 48.5 5.3 24 16-39 27-50 (242)
436 TIGR02769 nickel_nikE nickel i 97.5 0.00023 5E-09 49.3 5.3 24 16-39 36-59 (265)
437 PRK15112 antimicrobial peptide 97.5 0.00022 4.9E-09 49.4 5.2 24 16-39 38-61 (267)
438 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.6E-09 40.4 3.1 20 20-39 2-21 (69)
439 PRK13646 cbiO cobalt transport 97.5 0.00022 4.8E-09 50.0 5.2 24 16-39 32-55 (286)
440 cd03295 ABC_OpuCA_Osmoprotecti 97.5 0.00024 5.2E-09 48.5 5.2 22 18-39 28-49 (242)
441 PRK11831 putative ABC transpor 97.5 0.00023 5E-09 49.5 5.2 23 17-39 33-55 (269)
442 cd03297 ABC_ModC_molybdenum_tr 97.5 0.00026 5.6E-09 47.4 5.3 22 18-39 24-45 (214)
443 COG0411 LivG ABC-type branched 97.5 2.7E-05 6E-10 52.9 0.5 21 19-39 32-52 (250)
444 KOG3859 Septins (P-loop GTPase 97.5 0.0003 6.5E-09 49.1 5.6 60 16-77 41-104 (406)
445 PRK11264 putative amino-acid A 97.5 0.00026 5.6E-09 48.5 5.4 23 17-39 29-51 (250)
446 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00011 2.4E-09 50.5 3.5 22 18-39 31-52 (254)
447 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00022 4.7E-09 47.6 4.8 24 16-39 25-48 (208)
448 cd01129 PulE-GspE PulE/GspE Th 97.5 0.0014 2.9E-08 45.7 8.9 31 9-39 72-102 (264)
449 PRK11300 livG leucine/isoleuci 97.5 0.00022 4.8E-09 49.0 5.0 24 16-39 30-53 (255)
450 PRK13649 cbiO cobalt transport 97.5 0.00024 5.2E-09 49.6 5.2 23 17-39 33-55 (280)
451 cd03247 ABCC_cytochrome_bd The 97.5 0.00026 5.6E-09 46.2 5.0 24 16-39 27-50 (178)
452 PRK09493 glnQ glutamine ABC tr 97.5 0.00026 5.6E-09 48.3 5.2 23 17-39 27-49 (240)
453 cd03251 ABCC_MsbA MsbA is an e 97.5 0.00026 5.6E-09 48.0 5.1 24 16-39 27-50 (234)
454 TIGR01288 nodI ATP-binding ABC 97.5 0.00025 5.4E-09 50.1 5.2 24 16-39 29-52 (303)
455 cd03294 ABC_Pro_Gly_Bertaine T 97.5 0.00025 5.4E-09 49.3 5.1 22 18-39 51-72 (269)
456 PRK13645 cbiO cobalt transport 97.5 0.00026 5.7E-09 49.7 5.3 22 18-39 38-59 (289)
457 cd03231 ABC_CcmA_heme_exporter 97.5 0.0003 6.6E-09 46.7 5.3 25 15-39 24-48 (201)
458 PRK10790 putative multidrug tr 97.5 0.00016 3.5E-09 55.5 4.5 25 15-39 365-389 (592)
459 PRK13641 cbiO cobalt transport 97.5 0.00026 5.7E-09 49.6 5.2 22 18-39 34-55 (287)
460 TIGR03796 NHPM_micro_ABC1 NHPM 97.5 0.00012 2.6E-09 57.3 3.8 25 15-39 503-527 (710)
461 TIGR03005 ectoine_ehuA ectoine 97.5 0.00029 6.2E-09 48.4 5.3 23 17-39 26-48 (252)
462 PRK13648 cbiO cobalt transport 97.5 0.00027 5.9E-09 49.1 5.1 24 16-39 34-57 (269)
463 PRK13539 cytochrome c biogenes 97.5 0.00027 5.9E-09 47.2 5.0 24 16-39 27-50 (207)
464 PRK13637 cbiO cobalt transport 97.5 0.00027 5.9E-09 49.6 5.1 23 17-39 33-55 (287)
465 PRK10575 iron-hydroxamate tran 97.5 0.00027 5.8E-09 49.0 5.0 24 16-39 36-59 (265)
466 PRK10247 putative ABC transpor 97.5 0.00032 6.8E-09 47.5 5.3 23 17-39 33-55 (225)
467 cd03253 ABCC_ATM1_transporter 97.5 0.00029 6.2E-09 47.9 5.1 24 16-39 26-49 (236)
468 PRK13652 cbiO cobalt transport 97.5 0.00028 6.1E-09 49.2 5.1 23 17-39 30-52 (277)
469 PRK11701 phnK phosphonate C-P 97.5 0.00026 5.7E-09 48.8 4.9 24 16-39 31-54 (258)
470 PRK03839 putative kinase; Prov 97.5 0.00013 2.9E-09 47.5 3.3 22 19-40 2-23 (180)
471 PRK13537 nodulation ABC transp 97.5 0.00027 5.8E-09 50.1 5.0 21 19-39 35-55 (306)
472 TIGR03411 urea_trans_UrtD urea 97.5 0.0003 6.4E-09 48.0 5.1 23 17-39 28-50 (242)
473 PRK11174 cysteine/glutathione 97.5 0.00021 4.5E-09 54.8 4.8 25 15-39 374-398 (588)
474 TIGR00235 udk uridine kinase. 97.5 0.00016 3.5E-09 48.3 3.7 27 14-40 3-29 (207)
475 COG0396 sufC Cysteine desulfur 97.5 0.00018 3.9E-09 48.7 3.9 34 21-67 34-67 (251)
476 TIGR02322 phosphon_PhnN phosph 97.5 0.00013 2.8E-09 47.5 3.1 21 19-39 3-23 (179)
477 PRK10078 ribose 1,5-bisphospho 97.5 0.00013 2.9E-09 47.9 3.2 21 19-39 4-24 (186)
478 COG1124 DppF ABC-type dipeptid 97.5 0.00097 2.1E-08 45.6 7.3 23 17-39 33-55 (252)
479 PRK10771 thiQ thiamine transpo 97.5 0.00031 6.7E-09 47.7 5.1 24 16-39 24-47 (232)
480 COG1117 PstB ABC-type phosphat 97.5 0.00039 8.5E-09 46.8 5.3 25 15-39 31-55 (253)
481 TIGR03740 galliderm_ABC gallid 97.4 0.00034 7.3E-09 47.2 5.2 24 16-39 25-48 (223)
482 PRK11614 livF leucine/isoleuci 97.4 0.0003 6.6E-09 47.8 5.0 23 17-39 31-53 (237)
483 PRK13635 cbiO cobalt transport 97.4 0.00028 6E-09 49.4 4.9 21 19-39 35-55 (279)
484 TIGR03873 F420-0_ABC_ATP propo 97.4 0.00034 7.3E-09 48.2 5.3 24 16-39 26-49 (256)
485 PRK14530 adenylate kinase; Pro 97.4 0.00014 3E-09 48.9 3.3 23 18-40 4-26 (215)
486 cd03238 ABC_UvrA The excision 97.4 0.00014 3.1E-09 47.6 3.2 25 15-39 19-43 (176)
487 COG4618 ArpD ABC-type protease 97.4 0.00011 2.5E-09 54.8 3.0 41 19-74 364-404 (580)
488 TIGR01193 bacteriocin_ABC ABC- 97.4 0.00023 5E-09 55.7 4.9 25 15-39 498-522 (708)
489 PF13238 AAA_18: AAA domain; P 97.4 0.00014 3E-09 44.4 3.0 21 20-40 1-21 (129)
490 PRK13536 nodulation factor exp 97.4 0.00027 5.9E-09 50.8 4.9 23 17-39 67-89 (340)
491 TIGR01277 thiQ thiamine ABC tr 97.4 0.00036 7.7E-09 46.8 5.2 24 16-39 23-46 (213)
492 PRK13632 cbiO cobalt transport 97.4 0.00032 7E-09 48.8 5.2 24 16-39 34-57 (271)
493 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 0.00035 7.6E-09 47.3 5.2 24 16-39 47-70 (224)
494 PRK11247 ssuB aliphatic sulfon 97.4 0.00029 6.4E-09 48.7 4.9 23 17-39 38-60 (257)
495 cd03228 ABCC_MRP_Like The MRP 97.4 0.00037 8.1E-09 45.1 5.1 24 16-39 27-50 (171)
496 PRK11153 metN DL-methionine tr 97.4 0.0003 6.6E-09 50.6 5.1 23 17-39 31-53 (343)
497 PRK15177 Vi polysaccharide exp 97.4 0.00016 3.5E-09 48.6 3.5 24 16-39 12-35 (213)
498 PF00004 AAA: ATPase family as 97.4 0.00015 3.3E-09 44.4 3.2 20 20-39 1-20 (132)
499 smart00382 AAA ATPases associa 97.4 0.00016 3.4E-09 44.1 3.2 22 18-39 3-24 (148)
500 PRK13644 cbiO cobalt transport 97.4 0.00031 6.7E-09 49.0 5.0 23 17-39 28-50 (274)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-27 Score=153.44 Aligned_cols=100 Identities=28% Similarity=0.519 Sum_probs=93.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++|+|||+|+.||.. +.+++.+..|+|++. .++++++ ..+++|||+|+++|+.+...|+++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 478999999999999999999999 999999999999885 5677777 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+|++|+|||+++.+||.++..|+.++....
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~ 111 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYA 111 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhc
Confidence 999999999999999999999999997764
No 2
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.7e-28 Score=153.50 Aligned_cols=120 Identities=35% Similarity=0.674 Sum_probs=112.1
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||.+++.+|..++.+++.+|+++|..+|||||+++++.. ++.... .||+|++.+.+.+.+.++++||.+|+.+
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence 899999999999999999999999999999999999988 655545 8999999999999999999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++..|..|+++.+++|||+|.+|++++.++++.+..++++..+.+.|
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~ 120 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP 120 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce
Confidence 99999999999999999999999999999999999999998765543
No 3
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=3e-26 Score=150.18 Aligned_cols=120 Identities=32% Similarity=0.645 Sum_probs=104.8
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||.+++.+|..+...+.+||+++|+++||||||++++.. +.+. .+.||.+.+...++..+..+.+||++|++.
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence 888888887766667789999999999999999999987 5555 357888988877888889999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++.++..+++++|++|+|||++++++++++..++.+++.+...++.|
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p 120 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC
Confidence 99999999999999999999999999999999999988765554444
No 4
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=6e-26 Score=148.84 Aligned_cols=120 Identities=34% Similarity=0.661 Sum_probs=104.4
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||.+++.+++.+..++.+||+++|+++||||||++++.. +.+.. +.||.+.+...+...+..+.+||++|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCccc-cCCccccceEEEEECCEEEEEEECCCCHh
Confidence 888888888877777889999999999999999999987 65554 56888887777778889999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++.++..+++++|++|+|||++++++++++..++.+++......+.|
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p 120 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC
Confidence 99999999999999999999999999999999999988765444444
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-26 Score=146.96 Aligned_cols=103 Identities=21% Similarity=0.406 Sum_probs=94.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
+.+|++++|+.++|||||+++++. +.|...|.+|+|++. ..+.+.+ +++++|||.|+++|+.+.+.|+++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 569999999999999999999999 999999999999875 4556666 889999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~ 124 (128)
+.++|+|||+++..||++...|++++.+++...
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~ 127 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSD 127 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999887543
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=144.38 Aligned_cols=102 Identities=27% Similarity=0.440 Sum_probs=93.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+|++|+|+.++|||||+-|+.. ++|++...+|+|.. ...+.+++ ..+.||||+|+++|+.+-+.|+|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR 76 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR 76 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence 4689999999999999999999999 99998889999965 45666777 78889999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+++++|+|||+++.+||..++.|+.++.+...
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~ 108 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQRQAS 108 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999987654
No 7
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=1.1e-24 Score=141.89 Aligned_cols=116 Identities=32% Similarity=0.672 Sum_probs=97.2
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||.+....+. .+.+||+++|++++|||||++++.. +.+. .+.||.+.+...+...+..+.+||++|++.
T Consensus 1 ~~~~~~~~~~----~~~~ki~l~G~~~~GKTsL~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 1 MGKLFSKLFG----NKEMRILMVGLDAAGKTTILYKLKL------GESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred CchhhhhhcC----CCccEEEEEcCCCCCHHHHHHHHhc------CCCC-CcCCccccceEEEEECCEEEEEEECCCChh
Confidence 6666444433 4679999999999999999999987 5553 356888888777777789999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+..++..+++++|++++|||++++++++++.+|+.+++++....+.|
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p 116 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV 116 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc
Confidence 99999999999999999999999999999999999998765444443
No 8
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1e-24 Score=134.12 Aligned_cols=120 Identities=36% Similarity=0.666 Sum_probs=111.2
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||..++.++.+++-.++++|+.+|..++||||++..+.. ++. ....||.|++++.+++.+..+.+||.+|+++
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl------~~~-~~~ipTvGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc------CCC-cccccccceeEEEEEeeeeEEeeeeccCchh
Confidence 888999999999999999999999999999999999987 333 3567999999999999999999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
.+.+|..|+....++|||+|.++++..++++..+..+++++.+.+.+
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~ 120 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI 120 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce
Confidence 99999999999999999999999999999999999999998877654
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=1.1e-24 Score=142.03 Aligned_cols=115 Identities=36% Similarity=0.709 Sum_probs=102.6
Q ss_pred HHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 6 YGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 6 ~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+++++.+.. ++.+||+++|+++|||||+++++.. +... ...||.|.+...+.+.+..+.+||++|+..++..
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~ 74 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKN------GEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL 74 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------SSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGG
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhh------cccc-ccCcccccccceeeeCcEEEEEEecccccccccc
Confidence 456665554 8999999999999999999999987 4332 4779999999999999999999999999999999
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
|+.|+.+++++|||+|.++++.+.++++.+.+++.+....+.|
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p 117 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP 117 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcchhhcccce
Confidence 9999999999999999999999999999999999988776665
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=4.3e-24 Score=134.16 Aligned_cols=99 Identities=27% Similarity=0.467 Sum_probs=89.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|.+|+|||||+.+|.. +.+.+....|+|++ ...+.+++ .++.+||++|+++|+.+.+.|++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence 368999999999999999999998 88888888889987 46677777 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+.++|+|||++.+++|.++..|+.++-..
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y 112 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLY 112 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence 99999999999999999999999997543
No 11
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=7.7e-24 Score=137.18 Aligned_cols=107 Identities=36% Similarity=0.712 Sum_probs=92.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.++.+||+++|+++||||||++++.. +.+. .+.||.+.+...+...+..+.+||++|+++++.++..+++++|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~------~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~ 78 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 78 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHcc------CCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 35789999999999999999999987 5554 3567888877777777799999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++.+++++..|+.+++.....++.|
T Consensus 79 ~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p 112 (168)
T cd04149 79 GLIFVVDSADRDRIDEARQELHRIINDREMRDAL 112 (168)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc
Confidence 9999999999999999999999998765444444
No 12
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=2.1e-23 Score=131.19 Aligned_cols=105 Identities=34% Similarity=0.652 Sum_probs=97.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+.++++|+++|..||||||++++|.. +..+...||.|+++.+..++++++.+||++|+..++..|+.||..+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 45799999999999999999999985 44678899999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
++|+|+|.+|+.++++-...+.+++.+.+...
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG 117 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAG 117 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999988776654
No 13
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=2.5e-23 Score=133.67 Aligned_cols=103 Identities=31% Similarity=0.686 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~ 97 (128)
+||+++|+++||||||++++.. +.+. .+.||.+.+...+......+.+||++|++++...+..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4899999999999999999987 6665 46788888777777778999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 98 VIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
|||++++++++++.+|+.++.......+.|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 103 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAV 103 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCC
Confidence 999999999999999999988665444443
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=3.2e-23 Score=135.98 Aligned_cols=101 Identities=25% Similarity=0.445 Sum_probs=89.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
++..+||+++|++++|||||++++.. +.++..+.||++..+ ..+.+++ ..+.+||++|++.|..++..+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~ 75 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 75 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcC
Confidence 46789999999999999999999999 888888889988654 3455665 67999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDS-KTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~~ 120 (128)
++|++++|||+++++||+++ ..|+.++...
T Consensus 76 ~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~ 106 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQEF 106 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 7899887653
No 15
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.7e-24 Score=134.90 Aligned_cols=127 Identities=55% Similarity=0.933 Sum_probs=114.3
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
|+++++++|+.++++..+.++++|+.++||||++.+....+.. ..+..+....+|.|.++.++.+.+..+.+||.+|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 9999999999999999999999999999999999998875553 234556678899999999999999999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
..+++|..|+..||++++++|.+|++.|++.+..++.+..++...+.|
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p 128 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP 128 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999888877665544
No 16
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=6.9e-23 Score=133.31 Aligned_cols=116 Identities=36% Similarity=0.676 Sum_probs=98.6
Q ss_pred hHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 5 ~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+..++..++.++.+||+++|++++|||||++++.. +.+.. +.+|.+.+...+.+.+..+.+||+||+..+...
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL------GEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 45666766666789999999999999999999988 55554 467888777778888899999999999999999
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+..+++.+|++++|+|+++++++..+..++.++++.....+.|
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p 118 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV 118 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC
Confidence 9999999999999999999999999999999988765444444
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.90 E-value=3.7e-24 Score=136.95 Aligned_cols=105 Identities=26% Similarity=0.418 Sum_probs=95.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
++..+||+++|++|+|||||++++.+ .+|.+.+..|+|.. .+.+.+++ +.+++|||+|+++|.++...++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFY 79 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFY 79 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccccee
Confidence 46779999999999999999999999 89999999999976 46677777 7799999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~ 124 (128)
+++|+++++||++++.||+.+..|-++++......
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~ 114 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQ 114 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998876644
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=6.3e-23 Score=136.51 Aligned_cols=96 Identities=25% Similarity=0.451 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+.|+++|++|||||||++++.. +.+...+.+|++... ..+.+++ ..+.+||++|+++|+.++..|++++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad 74 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 74 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence 4689999999999999999998 888888888887553 4667776 78899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++++|||++++++|+++..|+..+..
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~ 100 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMIDK 100 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=130.63 Aligned_cols=99 Identities=28% Similarity=0.507 Sum_probs=90.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.++.+++|++|+|||+|+-+|.. +.|...|..|+|++ +.++++++ +.++|||+.|++.|+.+...|++..
T Consensus 8 LfkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 35678999999999999999999 88889999999987 46677777 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++.|||+++.+||.+.+.|++++.+..
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~nc 110 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNC 110 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcC
Confidence 99999999999999999999999998764
No 20
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=1.2e-22 Score=132.05 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=86.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|++|+|||||++++.. +.++..+.+|.+..+ ..+.+++ ..+.+||++|++.+..++..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 75 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE 75 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence 57999999999999999999999 888878888887554 3566666 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++|+.+.+|+..+.+.
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~ 102 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRV 102 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999887776553
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=1e-22 Score=133.56 Aligned_cols=97 Identities=26% Similarity=0.425 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+|++++|++++|||||++++.. +.+.+.+.+|.|.+. ..+.+++ ..+.+||++|++.+..++..+++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV 74 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence 5899999999999999999999 888888899998765 4566776 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++|+++..|+.++...
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~ 101 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGF 101 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998663
No 22
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.8e-23 Score=133.80 Aligned_cols=101 Identities=27% Similarity=0.451 Sum_probs=92.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+|++++|+++||||+++.++.. +.+...+..|+|+.. ..+++++ ..+++||+.|+++|+.+...|++.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 578999999999999999999999 888889999999874 6777777 679999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
|+++++|||++++.||+++..|++.+-.+..
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~ 115 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHAS 115 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999876643
No 23
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.2e-23 Score=128.47 Aligned_cols=98 Identities=34% Similarity=0.590 Sum_probs=91.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|+.|+|||+|++++.. +.||.-...|+|+. +.++++++ .++++||+.|+++|++....|++.+
T Consensus 7 lfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 58999999999999999999999 99999999999976 57888887 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++++|||++...+|+-+.+|+.++-..
T Consensus 81 halilvydiscqpsfdclpewlreie~y 108 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQY 108 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHH
Confidence 9999999999999999999999998654
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.90 E-value=1.1e-22 Score=134.35 Aligned_cols=97 Identities=23% Similarity=0.360 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|+++||||||+.++.. +.+++.+.||++..+. .+.+++ ..+.+||++|+++|+.++..+++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~ 76 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTN 76 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCC
Confidence 58999999999999999999999 8888888999986543 344555 77999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++++|||+++++||+++. .|+.++..
T Consensus 77 ~~ilvydit~~~Sf~~~~~~w~~~i~~ 103 (191)
T cd01875 77 VFIICFSIASPSSYENVRHKWHPEVCH 103 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999997 58776654
No 25
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.90 E-value=1.4e-22 Score=129.89 Aligned_cols=105 Identities=21% Similarity=0.356 Sum_probs=87.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|++|||||||++++.. +.+...+.+|.+.. ...+.+++ ..+.+||++|++++..++..++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 74 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCC
Confidence 37999999999999999999998 77766777777633 34556666 56889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++|+++..|+.++.......+.|
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (163)
T cd04136 75 GFVLVYSITSQSSFNDLQDLREQILRVKDTENVP 108 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999987654433333
No 26
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=9.4e-23 Score=133.31 Aligned_cols=98 Identities=26% Similarity=0.453 Sum_probs=86.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
++||+++|++++|||||++++.. +.++..+.||.+..+ ..+.+++ ..+.+||++|++.|..+.+.+++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD 74 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence 47999999999999999999999 888888889987654 3455666 77999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDS-KTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~-~~~l~~~~~~ 120 (128)
++++|||+++++||+++ ..|+.++...
T Consensus 75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~ 102 (178)
T cd04131 75 AVLICFDISRPETLDSVLKKWRGEIQEF 102 (178)
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHH
Confidence 99999999999999996 7899887654
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=9.4e-23 Score=133.08 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+|++++|++++|||||+.++.. +.+.+.+.+|++... ..+.+++ +++.+||++|+++|+.++..+++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV 75 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence 6899999999999999999999 888888999998654 3455555 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDS-KTALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~-~~~l~~~~~~ 120 (128)
+++|||+++++||+++ ..|+.++...
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~ 102 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHY 102 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998 6899988644
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.90 E-value=1.3e-22 Score=132.24 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++++|||||++++.. +.+++.+.||++..+. .+.+++ +.+.+||++|++.+..++..+++++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 75 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCE
Confidence 6899999999999999999998 8888888899887654 556666 678899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDSKT-ALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~-~l~~~~~~ 120 (128)
+++|||++++++|+++.. |+.++...
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~ 102 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHH 102 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999974 88777543
No 29
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=1.6e-22 Score=133.30 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=87.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|+.+||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.|..++..++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ 78 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG 78 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 568999999999999999999998 777667767766553 4566666 778999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|||++++++|+++..|+.++...
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~ 107 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEH 107 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999654
No 30
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=1.4e-22 Score=131.04 Aligned_cols=102 Identities=33% Similarity=0.669 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
+|+++|+++||||||++++.. . +...+.+|.|.....+...+..+.+||++|++.++.++..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 479999999999999999986 3 556778999988778888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 99 IDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
||+++++++++++.|+..+.......++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~p 102 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKP 102 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCc
Confidence 99999999999999999998775444444
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=1.9e-22 Score=129.57 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce-EEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
++||+++|++++|||||++++.. +.+.+.+.+|.+. ....+.+++ ..+.+||++|++++..++..+++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence 47999999999999999999998 7777777777652 234556666 56889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++|+++..|+..+.+.....+.|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 108 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP 108 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999887654333333
No 32
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.90 E-value=1.6e-22 Score=131.03 Aligned_cols=102 Identities=37% Similarity=0.695 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
||+++|+++||||||++++.. +.+. .+.+|.+.....++..+..+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~------~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ------DEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 689999999999999999998 5554 367888888777888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 99 IDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+|++++++++++..|+.++.+.....+.|
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~p 102 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDAL 102 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCC
Confidence 99999999999999999998765444433
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=2e-22 Score=132.72 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=88.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
...+||+++|++++|||||++++.. +.+...+.+|.+..+ ..+.+++ ..+.+||++|++++..++..+++.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~ 76 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT 76 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence 4579999999999999999999998 777777778877654 3445565 568899999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++++|||++++++|+.+..|+.++.+..
T Consensus 77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~ 106 (189)
T PTZ00369 77 GQGFLCVYSITSRSSFEEIASFREQILRVK 106 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887654
No 34
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=1.4e-22 Score=134.68 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-----C--eEEEEEeCCCCccchhhHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-----N--SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-----~--~~~~~~D~~g~~~~~~~~~~~ 88 (128)
+||+++|++++|||||++++.. +.+...+.+|+|.+. ..+.++ + +.+.+||++|++.|..++..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~ 74 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence 5899999999999999999999 888888888988543 344553 2 679999999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|++++|||+++++||+++..|+.++.+.
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNK 106 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999763
No 35
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=130.19 Aligned_cols=100 Identities=24% Similarity=0.347 Sum_probs=92.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+|++++|+.|+|||+|+.++.. ..|...+..|+|++. ..+++++ .++++||++|++.|++....|++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~ 78 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRG 78 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhcc
Confidence 478999999999999999999999 889889999999885 4666777 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+.++++|||++++++|.++..||.++.++.
T Consensus 79 a~GalLVydit~r~sF~hL~~wL~D~rq~~ 108 (216)
T KOG0098|consen 79 AAGALLVYDITRRESFNHLTSWLEDARQHS 108 (216)
T ss_pred CcceEEEEEccchhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998774
No 36
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=1.8e-22 Score=131.05 Aligned_cols=97 Identities=25% Similarity=0.443 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
||+++|+++||||||++++.. +.+.+.+.+|.+..+ ..+.+++ .++.+||++|++++..++..+++++|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA 75 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence 799999999999999999999 888888899988664 3455666 679999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+++|||++++++++.+..|+.++.+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~ 102 (170)
T cd04108 76 IIIVFDLTDVASLEHTRQWLEDALKEN 102 (170)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987654
No 37
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=2.4e-22 Score=129.25 Aligned_cols=105 Identities=19% Similarity=0.362 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
++||+++|++|||||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..+++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 74 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence 47999999999999999999998 777777778877543 3555665 56789999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++|+++..|+..+.......+.|
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (164)
T cd04175 75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP 108 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999998654434443
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=2.9e-22 Score=129.28 Aligned_cols=96 Identities=31% Similarity=0.620 Sum_probs=86.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
.|+++|+++||||||++++.. +.+...+.||.+.....+...+.++.+||++|++.++.++..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhc------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 379999999999999999998 66677788998887666666779999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC
Q 033075 99 IDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
||++++.++..++.|+.++...
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~ 96 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQH 96 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 39
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=5e-22 Score=130.41 Aligned_cols=116 Identities=30% Similarity=0.507 Sum_probs=96.4
Q ss_pred hHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075 5 FYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 5 ~~~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
+.++|..+. .++.++|+++|+++||||||++++.. +.+. .+.+|.+.....+.+++.++.+||++|...++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKN------DRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHH
Confidence 456677552 37889999999999999999999987 4433 345677777677778889999999999999999
Q ss_pred hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
.+..+++++|++++|+|++++++++.+..++.++++.....++|
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p 120 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence 99999999999999999999999999999999988765444444
No 40
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=4.4e-22 Score=132.23 Aligned_cols=96 Identities=27% Similarity=0.477 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+||+++|+++||||||++++.. +.+...+.+|.+.+. ..+.++ + ..+.+||++|++.+..++..+++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a 74 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA 74 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence 5899999999999999999998 777777888988653 445565 3 6789999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+++++|||++++++|+++..|+.++..
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~ 101 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDS 101 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=4.1e-22 Score=129.89 Aligned_cols=100 Identities=21% Similarity=0.390 Sum_probs=86.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEEC------------CeEEEEEeCCCCccc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPGL 81 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~ 81 (128)
..+||+++|+++||||||++++.. +.+...+.+|.+.+.. .+.+. ...+.+||++|++.+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF 76 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence 468999999999999999999998 7777788888876543 33332 267999999999999
Q ss_pred hhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
...+..+++++|++++|||++++++|.++..|+.++....
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 116 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA 116 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999886543
No 42
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=5.9e-22 Score=127.79 Aligned_cols=98 Identities=27% Similarity=0.392 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|++++|||||++++.. +.+...+.+|.+.+. ..+.+++ ..+.+||++|++.+...+..+++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 75 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA 75 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 47999999999999999999998 777777778877664 3445565 6789999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+.++...
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 103 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNL 103 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987553
No 43
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=5.3e-22 Score=134.40 Aligned_cols=99 Identities=24% Similarity=0.435 Sum_probs=87.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
..+||+++|+++||||||++++.. +.+...+.||++..+ ..+.+++ +.+.+||++|++.|..+...+++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 578999999999999999999999 888888899988664 3455666 7799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHH-HHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDS-KTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~-~~~l~~~~~~ 120 (128)
|++++|||++++++|+++ ..|+.++...
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~ 114 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDY 114 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999985 7899988753
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=9.2e-22 Score=125.69 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=85.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|++|||||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..+++.++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~ 74 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 74 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence 36899999999999999999998 667667777776443 3455665 56889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++++|||++++++|+++..|+.++.+...
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~ 103 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKRVKD 103 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998876543
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=5.8e-22 Score=133.40 Aligned_cols=100 Identities=19% Similarity=0.424 Sum_probs=88.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--ECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++|||||||++++.. +.+...+.+|+|....... .++ ..+.+||++|++.+..++..+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence 5789999999999999999999998 8888888899987755443 333 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.++++|+|||++++++|+++..|+.++...
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~ 114 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998754
No 46
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=8e-22 Score=128.04 Aligned_cols=106 Identities=38% Similarity=0.669 Sum_probs=90.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
...+||+++|++++|||||++++.. .. ...+.+|.+.....+.+++..+.+||++|++.++..+..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~------~~-~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLG------ED-IDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc------CC-CCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 4678999999999999999999987 32 2356678887777788888999999999999999899999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+++|||++++++++++..|+.+++......+.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 117 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGAT 117 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 999999999999999999999987654433443
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=1.1e-21 Score=126.10 Aligned_cols=98 Identities=22% Similarity=0.482 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.+..++..+++.+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ 74 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence 5899999999999999999999 777778888888664 3455555 78899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|||++++++++.+..|+.++....
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~ 102 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEG 102 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 9999999999999999999999987643
No 48
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=9.8e-22 Score=126.37 Aligned_cols=97 Identities=24% Similarity=0.455 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. +.+...+.+|.+.+. ..+.+++ ..+.+||++|++.+..++..+++.+|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 74 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ 74 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence 4899999999999999999998 888778888888654 4566666 67889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++|+++..|+.++...
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~ 101 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDEY 101 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987654
No 49
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=8.9e-23 Score=126.46 Aligned_cols=121 Identities=33% Similarity=0.640 Sum_probs=108.1
Q ss_pred ChhhhHHHHhhh---hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075 1 MFSLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 1 m~~~~~~~~~~~---~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 77 (128)
|-+.+++.+.++ +-..++.+.++|..++|||||++.+.. +++.....||.|++...++-+...+.+||++|
T Consensus 1 m~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~------g~~~edmiptvGfnmrk~tkgnvtiklwD~gG 74 (186)
T KOG0075|consen 1 MCAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIAR------GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGG 74 (186)
T ss_pred ChhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEee------ccchhhhcccccceeEEeccCceEEEEEecCC
Confidence 445556665543 335789999999999999999999998 88888999999999999988889999999999
Q ss_pred CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+..++.+|..|++.++++++|+|.+|++.++..++.+..++..+....+|
T Consensus 75 q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip 124 (186)
T KOG0075|consen 75 QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP 124 (186)
T ss_pred CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc
Confidence 99999999999999999999999999999999999999999988777665
No 50
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-22 Score=130.80 Aligned_cols=100 Identities=24% Similarity=0.401 Sum_probs=92.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+|++++|++++|||-|+.++.. ++|.-+..+|+|+... .+.+++ ...+||||.|+++|+.+...|++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 367899999999999999999999 8998899999998754 456666 788999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+.++++|||++++.+|+++..||.++..+.
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdha 116 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHA 116 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998875
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.88 E-value=1e-21 Score=132.33 Aligned_cols=95 Identities=24% Similarity=0.409 Sum_probs=83.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
++||+++|+++||||||+.++.. +.++..+.||++.++ ..+.+++ ..+.+||++|++.|..+++.+++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d 74 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD 74 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence 37999999999999999999998 888888999988665 3556666 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHH-HHHHH
Q 033075 94 AVVFVIDAACPSRFEDSKT-ALGKF 117 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~-~l~~~ 117 (128)
++++|||++++++|+++.. |..++
T Consensus 75 ~illvfdis~~~Sf~~i~~~w~~~~ 99 (222)
T cd04173 75 AVLICFDISRPETLDSVLKKWQGET 99 (222)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999954 65544
No 52
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=2.1e-21 Score=125.51 Aligned_cols=101 Identities=20% Similarity=0.405 Sum_probs=87.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.+..++..+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence 4679999999999999999999998 777767777877653 4555665 67889999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
.+|++++|||++++++++.+..|+.++....
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 9999999999999999999999999887643
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=1.4e-21 Score=126.38 Aligned_cols=98 Identities=17% Similarity=0.417 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||+++++. +.+...+.+|.+.......+ ++ ..+.+||++|++.+..++..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence 5899999999999999999998 77777788888876655433 32 78999999999999888889999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|||++++++++++..|+.++....
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 102 (166)
T cd00877 75 CAIIMFDVTSRVTYKNVPNWHRDLVRVC 102 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987654
No 54
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=2.5e-21 Score=125.40 Aligned_cols=103 Identities=29% Similarity=0.530 Sum_probs=86.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccch-hhHHHhhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEKYYEE 91 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~ 91 (128)
.+||+++|++|+|||||++++.. +.++..+.++.+... ..+.+++ ..+.+||++|++.++ .++..++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 75 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN 75 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence 58999999999999999999998 777777778877553 3455566 789999999999886 478888999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
+|++++|||++++++|+.+..|+.++.......+
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 109 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE 109 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998876543333
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=1.7e-21 Score=130.45 Aligned_cols=99 Identities=30% Similarity=0.521 Sum_probs=85.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+||+++|+++||||||++++.. +.+...+.+|++.+. ..+.+. + ..+.+||++|++.+..++..++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 75 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN 75 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998 666666778877653 344443 3 679999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+|++++|||++++++|+++..|+.++....
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~ 105 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARSHI 105 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999987653
No 56
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=1.9e-21 Score=130.54 Aligned_cols=97 Identities=28% Similarity=0.441 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+||+++|+++||||||++++.. +.+...+.+|.+.+. ..+.+++ ..+.+||++|++.+..++..+++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a 74 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA 74 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence 5899999999999999999998 777788889988664 4455543 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+..+...
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~ 102 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKV 102 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=2.2e-21 Score=125.23 Aligned_cols=98 Identities=27% Similarity=0.475 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.+..++..+++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a 76 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 76 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC
Confidence 58999999999999999999998 777778888887653 4555666 6789999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+..+...
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 104 (167)
T cd01867 77 MGIILVYDITDEKSFENIRNWMRNIEEH 104 (167)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999999988754
No 58
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.3e-22 Score=122.89 Aligned_cols=98 Identities=28% Similarity=0.453 Sum_probs=89.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+|++++|+.|.|||+|+++|.. .++.+...+|+|++.. .+.+.+ +++++||+.|+++|+.....|++++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 57999999999999999999999 8999999999998864 344555 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+.++|||++++++|+.+..|+.+....
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~l 110 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTL 110 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999987654
No 59
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.87 E-value=2.1e-21 Score=124.31 Aligned_cols=97 Identities=34% Similarity=0.641 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~ 97 (128)
+|+++|+++||||||++++.. .. +...+.+|.+.....+...+..+.+||+||.+++..++..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~------~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKP------ENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcc------cCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence 589999999999999999987 43 34466788887766666777999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCc
Q 033075 98 VIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
|+|++++.++..+..|+..+.+..
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~ 98 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHP 98 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999887754
No 60
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=2.6e-21 Score=124.62 Aligned_cols=109 Identities=57% Similarity=0.998 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
+|+++|++|+|||||++++.......++.++..+.+|.+.+...+.+++..+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999998743332244456677888888888888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 99 IDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+|+++++++..+..|+.++.+.....+.|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p 109 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVP 109 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCC
Confidence 99999999999999999988765444443
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.87 E-value=3.3e-21 Score=123.81 Aligned_cols=99 Identities=21% Similarity=0.272 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
+||+++|++|+|||||++++.. +.+.+.+.++.+.....+.+++ ..+.+||++|++. ..+++.+|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT------GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh------CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence 5899999999999999999998 6666666565554456677877 6699999999975 3466889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 96 VFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++|||++++++|+++..|+.++....+.++.|
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p 101 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIP 101 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999998765444433
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=3.7e-21 Score=123.38 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=84.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++++|||||++++.. +.+...+.++.+... ....+++ ..+.+||+||++++..++..+++.+
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 74 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTG 74 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhC
Confidence 358999999999999999999998 666666666666432 3445666 5788999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
|++++|||++++++|+.+..|+.++.+..
T Consensus 75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 103 (164)
T cd04145 75 EGFLLVFSVTDRGSFEEVDKFHTQILRVK 103 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887643
No 63
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=1.7e-21 Score=125.56 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||++++.. +++...+.++.+.+. ..+..++ ..+.+||++|++.+...+..++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~ 75 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence 7999999999999999999998 777777788887654 3444444 67999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++|+++..|+.++...
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~ 102 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKTY 102 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998543
No 64
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=2.1e-21 Score=135.84 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=89.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC---------------CeEEEEEeCC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS---------------NSKLVFWDLG 76 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~---------------~~~~~~~D~~ 76 (128)
....+||+++|+.+||||||++++.. +.+...+.+|+|... ..+.++ .+.+.|||++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA 91 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS 91 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence 34679999999999999999999998 778778889998764 445543 2669999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++.|+.++..|+++++++|+|||++++++|+++..|+.++...
T Consensus 92 GqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~ 135 (334)
T PLN00023 92 GHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAAT 135 (334)
T ss_pred CChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999765
No 65
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=4e-21 Score=123.77 Aligned_cols=98 Identities=29% Similarity=0.513 Sum_probs=84.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|++++|||||++++.. +.+...+.++.+... ..+..++ ..+.+||++|++.+...+..+++.+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 75 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 75 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence 47999999999999999999998 666667777777543 4555565 5789999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+.++...
T Consensus 76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~ 103 (166)
T cd01869 76 HGIIIVYDVTDQESFNNVKQWLQEIDRY 103 (166)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999999988653
No 66
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=3.7e-21 Score=127.69 Aligned_cols=99 Identities=28% Similarity=0.490 Sum_probs=86.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 78 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG 78 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence 468999999999999999999998 777777788888654 4455555 578999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++++|||++++++|+.+..|+..+...
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~ 107 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQN 107 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987654
No 67
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=6.7e-21 Score=125.28 Aligned_cols=115 Identities=34% Similarity=0.569 Sum_probs=95.0
Q ss_pred HHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 6 YGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 6 ~~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
.+.++.+. ..+..|++++|++|||||||++++.. +.+ ..+.+|.+.....+.+++..+.+||+||+..+...
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~------~~~-~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~ 79 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD------DRL-AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRL 79 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc------CCC-cccCCccCcceEEEEECCEEEEEEECCCCHHHHHH
Confidence 34444332 35689999999999999999999987 444 35667777777788888899999999999999888
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+..+++.++++++|+|+++.++++++..|+.++.+.....+.|
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 122 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP 122 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence 8999999999999999999999999999999998765544444
No 68
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=2.7e-21 Score=130.14 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~ 97 (128)
+||+++|.+++|||||++++.. +.+.. +.+|++.......+....+.+||++|++.+..++..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 5899999999999999999998 77764 5688887665555666889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC
Q 033075 98 VIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|||++++++|+++..|+..+...
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~ 96 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDT 96 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.87 E-value=3e-21 Score=125.70 Aligned_cols=97 Identities=22% Similarity=0.355 Sum_probs=83.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|+++||||||+.++.. +.+.+.+.+|.+... ..+.+++ .++.+||++|++.+..++..+++++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 74 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence 47999999999999999999998 888888888876543 3455655 67889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++|+|||++++++|+++. .|+..+..
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~ 101 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRH 101 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 58776654
No 70
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.87 E-value=3.9e-21 Score=118.56 Aligned_cols=106 Identities=37% Similarity=0.717 Sum_probs=98.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
++.+|++++|..++||||+++++. ++.+....||.|++...+.+.+ ..+.+||++|+...+..|..|+.+.|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~-------sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLK-------SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHc-------cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccc
Confidence 689999999999999999999988 4566678899999999999988 89999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|+|.+|+..|+++.+.+-+++...+....|
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp 121 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP 121 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc
Confidence 9999999999999999999999999988776654
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=5.1e-21 Score=123.01 Aligned_cols=96 Identities=21% Similarity=0.400 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. +.+...+.++.+... ....+++ ..+.+||++|++.+..++..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 74 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999998 666666666665443 2334454 67889999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++++|||++++.+++++..|+.++..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELRE 100 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 72
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=3.3e-21 Score=127.04 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
||+++|++|||||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..+++.+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence 589999999999999999998 777777777776543 3445666 5688999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC
Q 033075 96 VFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++|||++++++|+.+..|+..+...
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~ 99 (190)
T cd04144 75 ILVYSITSRSTFERVERFREQIQRV 99 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888654
No 73
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=4.6e-21 Score=122.87 Aligned_cols=98 Identities=26% Similarity=0.545 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
||+++|++++|||||++++.. +.++..+.+|.|.+. ..+..++ ..+.+||++|++.+..++..+++++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 74 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA 74 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999 888888889987664 4455555 679999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+++|||+++++||+++..|+..+.....
T Consensus 75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~ 102 (162)
T PF00071_consen 75 IIIVFDVTDEESFENLKKWLEEIQKYKP 102 (162)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999875543
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=6.2e-21 Score=122.52 Aligned_cols=99 Identities=20% Similarity=0.331 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++|||||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||++|++++..++..+++.+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~ 74 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQ------GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence 5899999999999999999998 66666666666533 23445555 678899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+++|||++++++|+++..|...+.+...
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 102 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKD 102 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999888766543
No 75
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=6.7e-21 Score=124.92 Aligned_cols=100 Identities=39% Similarity=0.684 Sum_probs=83.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-----CCeEEEEEeCCCCccchhhHHHhhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
+.+||+++|+++||||||++++.. +.+... .+|.+.......+ .+..+.+||++|++.+..++..+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 74 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKF------NEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR 74 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhc------CCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc
Confidence 368999999999999999999987 555433 5777765544433 2378999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++|++++|+|++++++++.+..|+.++.....
T Consensus 75 ~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~ 106 (183)
T cd04152 75 CTDGIVFVVDSVDVERMEEAKTELHKITRFSE 106 (183)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988876543
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=7e-21 Score=130.17 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce-EEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++++|||||++++.. +.+...+.+|++. ....+.+++ +.+.+||++|.+.|..++..++..+|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~ 74 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV 74 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 5899999999999999999998 7887777888763 344566666 678899999999998888888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++|||++++++|+++..|++++...
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~ 100 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILET 100 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998754
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=7.8e-21 Score=123.19 Aligned_cols=98 Identities=19% Similarity=0.324 Sum_probs=86.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
++.+||+++|++|+|||||++++.. +.+. ..+.+|.+... ..+.+++ ..+.+||++|++.+..++..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~ 75 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL 75 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence 5789999999999999999999998 7777 77888887653 4566666 6788999999999988888999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
+++|++++|||++++++|+.+..|+..+.
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~ 104 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYF 104 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 78
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=9.2e-21 Score=122.03 Aligned_cols=99 Identities=27% Similarity=0.504 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++|+|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 75 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS 75 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence 368999999999999999999988 66766666777644 35566666 578999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|||++++.+|+.+..|+..+...
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~ 104 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEKY 104 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHh
Confidence 99999999999999999999999988653
No 79
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=9.7e-22 Score=123.90 Aligned_cols=100 Identities=29% Similarity=0.473 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.++++++|++-+|||+|++.+.. +++++...||+|++. ..+++.. .++++||+.|+++|++..+.|+++
T Consensus 8 qfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence 78999999999999999999999 999999999999873 2333332 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+-++++|||+++++||+++..|+++....-.
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q 112 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQ 112 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999765443
No 80
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=8.3e-21 Score=124.81 Aligned_cols=97 Identities=29% Similarity=0.496 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|.+.+...+..+++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 74 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH 74 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence 5899999999999999999998 777766778877543 4555655 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++|+++..|+.++...
T Consensus 75 ~iilv~d~~~~~s~~~i~~~~~~i~~~ 101 (188)
T cd04125 75 GYLLVYDVTDQESFENLKFWINEINRY 101 (188)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988753
No 81
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=1e-20 Score=121.15 Aligned_cols=96 Identities=23% Similarity=0.478 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC--C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--N--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
+||+++|++++|||||++++.. +.+...+.+|.+.++ ..+.++ + ..+.+||+||++.+...+..++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 74 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence 4899999999999999999998 777777778887664 334444 2 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+|++++|||++++++|+.+..|+.++..
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~ 102 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEA 102 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 82
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=1e-20 Score=121.08 Aligned_cols=102 Identities=35% Similarity=0.665 Sum_probs=85.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~ 97 (128)
+|+++|++++|||||++++.. +.+.. ..+|.+.....+...+ ..+.+||++|+..+...+..+++.+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~------~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH------AELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 589999999999999999998 55543 3577777666666544 789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 98 VIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
|+|++++.++.++..|+.+++......+.|
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p 103 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNEHIKGVP 103 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhchhhcCCC
Confidence 999999999999999999988765444444
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=1.4e-20 Score=120.66 Aligned_cols=99 Identities=24% Similarity=0.428 Sum_probs=85.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
++||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||++|++++...+..+++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 74 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVK------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence 47999999999999999999998 66666667777743 34555665 6789999999999998999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
|++++|+|++++++++.+..|+..+....
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 103 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNA 103 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999887654
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=1.5e-20 Score=121.48 Aligned_cols=105 Identities=13% Similarity=0.291 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|++|||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++++..++..+++.++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 74 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQ------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ 74 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence 37899999999999999999998 777777777776443 4455555 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++++.+..|...+.+.....+.|
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVP 108 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999998887543333333
No 85
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=1.6e-20 Score=120.01 Aligned_cols=102 Identities=39% Similarity=0.734 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
||+++|.+++|||||++++.. +. ...+.++.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKL------GE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 689999999999999999998 44 34567788888788888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 99 IDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
||+++++++..+..|+..+.......+.|
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p 102 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVP 102 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence 99999999999999999988865544444
No 86
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.86 E-value=1.2e-20 Score=121.91 Aligned_cols=98 Identities=27% Similarity=0.363 Sum_probs=84.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|++++|||||++++.. +.+...+.++.+.+. ..+..++ ..+.+||++|.+.+..+...+++.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 77 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA 77 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence 47999999999999999999998 666666667766553 3445555 6799999999999999989999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++++.+..|+.++...
T Consensus 78 d~il~v~d~~~~~s~~~~~~~~~~~~~~ 105 (168)
T cd01866 78 AGALLVYDITRRETFNHLTSWLEDARQH 105 (168)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988664
No 87
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=1.9e-20 Score=118.88 Aligned_cols=100 Identities=35% Similarity=0.695 Sum_probs=88.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 033075 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~ 99 (128)
|+++|++|||||||++++.. ..+...+.++.+.+...+..++..+.+||++|+..+...+..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 78999999999999999998 777778888988887777777799999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCccccc
Q 033075 100 DAACPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 100 d~~~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
|+++++++..+..|+.++.......+
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEG 101 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcC
Confidence 99999999999999998876543333
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.85 E-value=1.6e-20 Score=120.54 Aligned_cols=99 Identities=20% Similarity=0.371 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+||+++|+++||||||++++.. . ...++..+.+|.+.+. ..+.+. + .++.+||++|++.+..++..+++++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~--~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 76 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS--N--GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--C--CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence 5899999999999999999986 1 0256677888887664 233333 2 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++++++..|+.++...
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 104 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRTA 104 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887654
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=2.2e-20 Score=119.51 Aligned_cols=98 Identities=20% Similarity=0.427 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||++++.. ..+...+.++.+.+. ..+.+++ ..+.+||+||++.+..++..+++.+|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMY------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 4899999999999999999998 666556666666543 4455555 57999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|||++++++|+.+..|+..+....
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 102 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRDER 102 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999886543
No 90
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=2.2e-20 Score=120.36 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++|+|||||++++.. +.+...+.++.+..+. .+.... ..+.+||++|++++..++..+++.+++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence 7899999999999999999998 7777777777765432 233333 678999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+++|||++++++|++++.|+..+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~ 100 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICE 100 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876654
No 91
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=2.2e-20 Score=119.68 Aligned_cols=96 Identities=29% Similarity=0.457 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence 5899999999999999999998 776666677766543 3445555 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++++|||++++++++++..|+.++..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDARA 100 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 92
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=1.6e-20 Score=120.13 Aligned_cols=102 Identities=35% Similarity=0.666 Sum_probs=84.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
||+++|++++|||||++++.. +.+. .+.+|.+.+...+...+.++.+||+||...++.++..+++.++++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc------CCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999977 4443 345777777667777789999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 99 IDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+|++++.++..+.+++..++......++|
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 102 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAV 102 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCc
Confidence 99999988988888888776654433443
No 93
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=2.6e-20 Score=119.78 Aligned_cols=98 Identities=24% Similarity=0.404 Sum_probs=84.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|+++||||||++++.. +.+...+.++.+.+. ..+..++ ..+.+||++|++.+..++..+++.+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 76 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTR------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA 76 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence 47999999999999999999998 666666677777543 4455556 5789999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++++|||++++.+++++..|+.++...
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 104 (165)
T cd01868 77 VGALLVYDITKKQTFENVERWLKELRDH 104 (165)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988664
No 94
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2e-20 Score=123.43 Aligned_cols=97 Identities=32% Similarity=0.571 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+||+++|+++||||||++++.. +.+. +.+.+|.+.... .+.+++ ..+.+||+||++.+...+..+++.+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 74 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA 74 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC
Confidence 5899999999999999999998 6554 355677765543 355665 6899999999999999889999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+..+...
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~ 102 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEY 102 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888754
No 95
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.4e-20 Score=124.01 Aligned_cols=97 Identities=27% Similarity=0.422 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.||+++|++|||||||++++.. +.+++.+.+|.+..+ ..+..++ ..+.+||++|++.+..++..+++.+|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~ 74 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV 74 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence 3899999999999999999998 888888888887654 3444555 679999999999999898899999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDSK-TALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~-~~l~~~~~~ 120 (128)
+++|||++++++|+++. .|+.++...
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~ 101 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIREH 101 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999986 588887643
No 96
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.85 E-value=2.7e-20 Score=122.70 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+||+++|++++|||||++++.. +.+.. .+.+|.+..+ ..+.+++ ..+.+||++|.+.+..++..+++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 74 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA 74 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC
Confidence 5899999999999999999998 66653 5677777543 4566666 5677999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++|+++..|+..+...
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~~ 102 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNL 102 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988654
No 97
>PLN03110 Rab GTPase; Provisional
Probab=99.85 E-value=3.2e-20 Score=124.70 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=86.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++++|||||++++.. +.+...+.+|.+.+. ..+.+++ ..+.+||++|++++..++..+++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 468999999999999999999998 677667778888664 4555666 689999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++++|||++++++|+++..|+..+...
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 113 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDH 113 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887654
No 98
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=3.2e-20 Score=121.78 Aligned_cols=96 Identities=22% Similarity=0.348 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. +.++..+.++.+..+ ..+... + ..+.+||++|++.+..++..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD 74 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence 5899999999999999999998 777777778877654 344454 3 67999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHH-HHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSKT-ALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~-~l~~~~~ 119 (128)
++++|||++++++|+++.. |+..+..
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~ 101 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNH 101 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999964 8776653
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=5.5e-20 Score=118.75 Aligned_cols=98 Identities=27% Similarity=0.457 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|+++||||||++++.+ ..+...+.++.+... ..+.+.+ ..+.+||+||++.+..++..+++.+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 74 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD 74 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence 5899999999999999999998 666566667766543 4455665 56789999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+++++||++++.+++++..|..++....
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 102 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQA 102 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988775543
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.84 E-value=4.4e-20 Score=118.19 Aligned_cols=99 Identities=25% Similarity=0.483 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+|++++|++++|||||++++.. ..+...+.++.+.+. ..+.+.+ .++.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999998 655555667777553 3344544 67999999999999888899999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++++|||++++.+|+.+..|+..+.....
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 103 (161)
T cd01863 75 GVILVYDVTRRDTFTNLETWLNELETYST 103 (161)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhCC
Confidence 99999999999999999999988766543
No 101
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=5.3e-20 Score=117.92 Aligned_cols=98 Identities=31% Similarity=0.534 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. ..+.....++.+... ..+..++ .++.+||+||++.+...+..+++.+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 74 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD------GKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence 5899999999999999999998 555556667766543 3455665 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|||++++.+++.+..|+.++....
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~ 102 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELREYA 102 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876543
No 102
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.2e-20 Score=115.25 Aligned_cols=97 Identities=27% Similarity=0.430 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-CC---eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SN---SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~---~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+|+.++|++.+||||++.+.+. ..|...+..|.|+..+.-++ .+ ..+++||+.|++.|+.+...|++++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 67999999999999999999998 88888888899987543332 22 7899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+++++|||+++++||..++.|..++-.
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIkt 121 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKT 121 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHhee
Confidence 999999999999999999999988754
No 103
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=2.6e-20 Score=123.78 Aligned_cols=92 Identities=17% Similarity=0.397 Sum_probs=81.6
Q ss_pred EcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 23 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
+|+++||||||+++++. +.+...+.+|+|.+... +.+++ ..+.+||++|+++|..++..+++++|++++|
T Consensus 1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV 74 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 74 (200)
T ss_pred CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence 69999999999999998 78877888999876543 34444 7899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC
Q 033075 99 IDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
||++++++|++++.|+.++...
T Consensus 75 ~D~t~~~S~~~i~~w~~~i~~~ 96 (200)
T smart00176 75 FDVTARVTYKNVPNWHRDLVRV 96 (200)
T ss_pred EECCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 104
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.83 E-value=6.6e-20 Score=119.03 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+|++++|++|+|||||++++.. +.+...+.+|.... ...+.+++ ..+.+||++|++++..++..+++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~ 74 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT------NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence 5899999999999999999998 77777777775422 23455655 678899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 95 VVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+++|||++++++|+++. .|+..+..
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~~ 100 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIRK 100 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999985 58877764
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=121.41 Aligned_cols=99 Identities=27% Similarity=0.363 Sum_probs=85.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++++|||||++++.. ..+...+.++++.+. ..+.+++ ..+.+||++|.+.+..++..+++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 458999999999999999999998 666666677777653 3456666 568899999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|||++++++|+.+..|+..+...
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~ 107 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQH 107 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887543
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1e-19 Score=120.71 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc-eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
||+++|++|+|||||+++++. +.+...+.++.+ .....+.+.+ ..+.+||++|...+..++..+++.+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence 689999999999999999998 666666666653 3344566666 6789999999999999989999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 96 VFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++|||++++++++++..|+..+.....
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~ 101 (198)
T cd04147 75 ALVYAVDDPESFEEVERLREEILEVKE 101 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999988876543
No 107
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.83 E-value=1.1e-19 Score=120.68 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchh--------hH
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRS--------IW 85 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~--------~~ 85 (128)
+||+++|+++||||||++++.. +.++..+.|+.+... ..+.+++ ..+.+||++|.+.+.. ..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence 5899999999999999999998 777777778876442 3455667 6788999999654321 23
Q ss_pred HHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
..+++.+|++++|||++++++|+++..|++++.+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~ 110 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETR 110 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999887653
No 108
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=1.3e-19 Score=117.47 Aligned_cols=95 Identities=25% Similarity=0.408 Sum_probs=80.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEEE
Q 033075 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v 96 (128)
|+++|++++|||||++++.. +.+...+.++.+... ..+..++ ..+.+||++|++.+..++..+++.+|+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence 58999999999999999998 777777777766543 3455555 57899999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHhcC
Q 033075 97 FVIDAACPSRFEDSK-TALGKFFGM 120 (128)
Q Consensus 97 ~v~d~~~~~s~~~~~-~~l~~~~~~ 120 (128)
+|||++++++|+++. .|+..+...
T Consensus 75 lv~d~~~~~s~~~~~~~~~~~i~~~ 99 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHF 99 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999996 488877653
No 109
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=4.2e-19 Score=114.95 Aligned_cols=100 Identities=38% Similarity=0.697 Sum_probs=86.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.+.++++++|++|+|||||++++.. ..+ ..+.++.|.+...+...+..+.+||++|...+...+..+++.+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~------~~~-~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLAS------EDI-SHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhc------CCC-cccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 4589999999999999999999987 333 245678888777888888999999999999888888999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+++|+|+++..++.....|+..+....
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~ 111 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEE 111 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence 999999999999999888888877654
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=1.9e-19 Score=115.87 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCcc-chhhHHHhhhccCE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYYEEAHA 94 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~~~ 94 (128)
||+++|++++|||||++++.. +.+.+.+.++.+.. ...+.+++ ..+.+||++|... .......+++.+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 74 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG 74 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence 689999999999999999998 66666666666433 33455665 5688999999885 34456778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++|||++++++|+.+..|+..+...
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~ 100 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREI 100 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877654
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=3.3e-19 Score=120.19 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhh-c
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE-E 91 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~-~ 91 (128)
+||+++|++|+|||||++++.. +.+. ..+.++.+ .....+.+++ ..+.+||++|++ ......+++ +
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ 72 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTS------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQ 72 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcC
Confidence 5899999999999999999987 6654 55666664 3345556655 779999999998 334455667 9
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+|++++|||++++++|+.+..|+.++.......+.|
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p 108 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP 108 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999887654333333
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.82 E-value=4.1e-19 Score=113.41 Aligned_cols=97 Identities=23% Similarity=0.406 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. +.+.....++.... ...+.+.+ ..+.+||++|++.+..++..+++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 74 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVE------NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence 5899999999999999999998 55544444454333 33444444 57999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++++|||++++++++.+..|+.++...
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~ 101 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQM 101 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887654
No 113
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=5.7e-19 Score=118.13 Aligned_cols=93 Identities=27% Similarity=0.565 Sum_probs=78.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+ ..+.++.+... ..+.+++ ..+.+||++|++.+..++..+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 84 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS------SSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 4578999999999999999999998 444 34567776543 4455655 67899999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHH
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
.+|++++|||++++++|+++..++
T Consensus 85 ~~d~~vlv~D~~~~~sf~~~~~~~ 108 (211)
T PLN03118 85 NAQGIILVYDVTRRETFTNLSDVW 108 (211)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999999998744
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=2.7e-19 Score=113.38 Aligned_cols=98 Identities=30% Similarity=0.506 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+||+++|++++|||||++++.. ......+.++.+.+.... ..++ ..+.+||+||.+.+...+..+++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH 74 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence 5899999999999999999998 666666677777665443 3333 77899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|+|++++++++.+..|+..+....
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 102 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKEYA 102 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887654
No 115
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=3.2e-19 Score=119.61 Aligned_cols=100 Identities=18% Similarity=0.413 Sum_probs=87.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
....+|++++|++|||||||++++.. +.+...+.+|.+.+.....+ ++ ..+.+||++|++.+..++..++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~ 79 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYY 79 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHh
Confidence 35679999999999999999999888 77777888999887655443 33 7899999999999998999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+.++++++|||++++.+|.++..|+.++..
T Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 109 (215)
T PTZ00132 80 IKGQCAIIMFDVTSRITYKNVPNWHRDIVR 109 (215)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 116
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=5e-19 Score=113.29 Aligned_cols=99 Identities=15% Similarity=0.253 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++|||||||++++.. +.+...+.++.+... .....++ ..+.+||++|+..+...+..+++.+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 74 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence 5899999999999999999998 666666666655433 3344554 679999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+++|+|++++++|+++..|+..+.....
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 102 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKD 102 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998887643
No 117
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.81 E-value=3.1e-19 Score=115.76 Aligned_cols=96 Identities=25% Similarity=0.365 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.||+++|+++||||||++++.. +.++..+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 6899999999999999999998 777777778877553 4556665 578999999999998888888899999
Q ss_pred EEEEEECCCcccHHHHHH-HHHHHhc
Q 033075 95 VVFVIDAACPSRFEDSKT-ALGKFFG 119 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~-~l~~~~~ 119 (128)
+++|||++++++|+.+.. |+..+..
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~ 101 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKH 101 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999998864 7766654
No 118
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=5.2e-19 Score=114.13 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC--CeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
+|++++|+++||||||++++.. +.++..+..+.+.......+. +.++.+||++|...+...+..+++.+|++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS------EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence 4899999999999999999998 666555443332222222333 37899999999998888778888999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHhc
Q 033075 96 VFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++|||++++++|+.+. .|+..+..
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~~ 99 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIRR 99 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 46665543
No 119
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=3.6e-19 Score=115.38 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|++.+...+..+++.+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 74 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 74 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence 5899999999999999999998 777666777765432 3455665 568899999999999998999999999
Q ss_pred EEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 95 VVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+++|||++++++|+++. .|+..+..
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~ 100 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKE 100 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999986 46666643
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.81 E-value=6.4e-19 Score=114.89 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.||+++|++|+|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||++++...+..++..+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 75 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG 75 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence 5899999999999999999998 66666666766543 44555665 568999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++++||+++.++++.+..|+..+.+...
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 103 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLG 103 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998877543
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.2e-18 Score=112.40 Aligned_cols=99 Identities=30% Similarity=0.540 Sum_probs=82.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...++++++|++|+|||||++++.. +.+...+.++.+.. ...+.+.+ ..+.+||++|++.+...+..+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR 78 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence 3568999999999999999999997 55555556666543 34456666 56889999999999998899999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~ 107 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQ 107 (169)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877643
No 122
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=5.2e-20 Score=115.67 Aligned_cols=99 Identities=21% Similarity=0.371 Sum_probs=85.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
-++|++++|..=+|||||+-++.. ++|..+...|+- +....+.+.+ .++.|||+.|+++|..+=+.|+++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~E------nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVE------NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHH------hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 478999999999999999999998 777777666543 3345555555 679999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|||++|++||+.++.|..++...
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~m 114 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTM 114 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 123
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.80 E-value=3.9e-19 Score=108.73 Aligned_cols=93 Identities=29% Similarity=0.486 Sum_probs=68.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCC----CCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPP----DRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~----~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
||+++|++|||||||++++.. ..+. .................. ..+.+||++|.+.+...+..++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 74 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCG------GEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKA 74 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------SS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhc------CCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcC
Confidence 799999999999999999998 3333 111111222222333333 5689999999998888777779999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHH
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
|++++|||++++++++++..++..+
T Consensus 75 d~~ilv~D~s~~~s~~~~~~~~~~l 99 (119)
T PF08477_consen 75 DAVILVYDLSDPESLEYLSQLLKWL 99 (119)
T ss_dssp CEEEEEEECCGHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCChHHHHHHHHHHHHH
Confidence 9999999999999999986654443
No 124
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=2.7e-18 Score=113.78 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhhccCCCCCCCCCCcCCcce-E-EE-E--------EEECC--eEEEEEeCCCCccch
Q 033075 17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-N-IG-R--------IEVSN--SKLVFWDLGGQPGLR 82 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~-~l~~~~~~~~~~~~~~~~~t~~~-~-~~-~--------~~~~~--~~~~~~D~~g~~~~~ 82 (128)
.+||+++|+++||||||+. ++.+.. -..+.+...+.||++. . +. . ..+++ ..+.+||++|++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 5799999999999999996 554410 0113455677788852 1 11 1 13455 7899999999875
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
.....+++++|++++|||+++++||+++. .|+.++..
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~ 116 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH 116 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999997 58887754
No 125
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=3.2e-18 Score=109.07 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
||+++|+++||||||++++.. ..+...+.++.+.. .......+ ..+.+||++|...+...+..+++.+|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 74 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK------GTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF 74 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence 689999999999999999998 55556666665532 33455554 6789999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 96 VFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
++|||++++++++++..|+..+.+...
T Consensus 75 i~v~d~~~~~s~~~~~~~~~~~~~~~~ 101 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILRVKD 101 (160)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999988876543
No 126
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.78 E-value=6.6e-18 Score=108.92 Aligned_cols=97 Identities=27% Similarity=0.412 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
+||+++|++|+|||||++++.. +.+...+.++..... ......+ ..+.+||+||++.+......+++.+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~ 74 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT------GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence 5899999999999999999998 655555555554332 3334444 679999999999888888888899999
Q ss_pred EEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075 95 VVFVIDAACPSRFEDSKT-ALGKFFGM 120 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~-~l~~~~~~ 120 (128)
+++|||++++++|..+.. |+..+...
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 101 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHY 101 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999987754 66665543
No 127
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.76 E-value=6.3e-18 Score=113.31 Aligned_cols=100 Identities=32% Similarity=0.464 Sum_probs=82.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--C--CeEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++|||||||++++.. +.+...+.++++........ . ...+.+||++|+++++.++..|+.+
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~ 77 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG 77 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC
Confidence 348999999999999999999999 88888888887765433322 2 2679999999999999999999999
Q ss_pred cCEEEEEEECCC-cccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAAC-PSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~ 121 (128)
++++++++|.++ ..+++....|..++....
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~ 108 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRELA 108 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHHhC
Confidence 999999999999 555666677887776644
No 128
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.76 E-value=7.6e-19 Score=115.02 Aligned_cols=100 Identities=23% Similarity=0.374 Sum_probs=87.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC-C--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+|+++||+..+|||+|+..+.. +.|+..+.||+--++ ..+.++ + +++.+|||.|+++|..+++..+.+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~ 76 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ 76 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence 468999999999999999999998 899999999987554 566774 6 779999999999999988888999
Q ss_pred cCEEEEEEECCCcccHHHHHH-HHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKT-ALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~-~l~~~~~~~ 121 (128)
+|++++||++.++.||+++++ |+.++....
T Consensus 77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c 107 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC 107 (198)
T ss_pred CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC
Confidence 999999999999999999755 888876654
No 129
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7.7e-18 Score=104.29 Aligned_cols=102 Identities=26% Similarity=0.366 Sum_probs=89.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.-.+|-+++|+-|+|||+|++++.. .+|-.....|+|+.. ..+++.+ .++++||+.|+++|+.+...|++
T Consensus 9 syifkyiiigdmgvgkscllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyr 82 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR 82 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 3478999999999999999999998 777778888999875 4456666 77999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
.+.+.++|||+++++.+.++..|+.+..+..+
T Consensus 83 gaagalmvyditrrstynhlsswl~dar~ltn 114 (215)
T KOG0097|consen 83 GAAGALMVYDITRRSTYNHLSSWLTDARNLTN 114 (215)
T ss_pred cccceeEEEEehhhhhhhhHHHHHhhhhccCC
Confidence 99999999999999999999999998765543
No 130
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.76 E-value=7.4e-18 Score=111.57 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=91.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+|++++|.+|+|||+|..++.. +.|...+.||++..+ ..+.+++ ..+.++|++|++++..+...++++.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~------~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLT------GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG 75 (196)
T ss_pred CceEEEEECCCCCCcchheeeecc------cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence 468999999999999999999999 999999999998654 5666666 7799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCccc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMRIC 123 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~ 123 (128)
+++++||+++++.||+.+..+++++.+....
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~ 106 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQILRVKGR 106 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999554433
No 131
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-18 Score=107.58 Aligned_cols=117 Identities=34% Similarity=0.579 Sum_probs=102.9
Q ss_pred ChhhhHHHHhhhhcc-ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 1 MFSLFYGLWKYIFTK-TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
|++...++|+.+... +..+++++|..|+|||+++.++.- ++. ....|++|++.+.+.+++.++.+||.+|+.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqv------gev-vttkPtigfnve~v~yKNLk~~vwdLggqt 73 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQV------GEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQT 73 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEccc------Ccc-cccCCCCCcCccccccccccceeeEccCcc
Confidence 677778888877765 899999999999999999998765 322 356799999999999999999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~ 124 (128)
..+..|..|+.+.+++|+|+|.+|+++..-+...+..++.++.+.
T Consensus 74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq 118 (182)
T KOG0072|consen 74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ 118 (182)
T ss_pred cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc
Confidence 999999999999999999999999999988888888888776554
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=3.3e-17 Score=107.74 Aligned_cols=97 Identities=25% Similarity=0.387 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
+.|++++|++|+|||||++++.. +.+++.+.++..... ..+.+++ ..+.+||++|++.+......+++.++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~ 74 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTL------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH 74 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCC
Confidence 35899999999999999999997 666666666655443 3445555 56889999999888777777889999
Q ss_pred EEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 94 AVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+++++||++++++|+++. .|+..+..
T Consensus 75 ~~llv~~i~~~~s~~~~~~~~~~~i~~ 101 (187)
T cd04129 75 VILIGFAVDTPDSLENVRTKWIEEVRR 101 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 58887754
No 133
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.2e-19 Score=112.23 Aligned_cols=100 Identities=23% Similarity=0.426 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC-----------eEEEEEeCCCCccchh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN-----------SKLVFWDLGGQPGLRS 83 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-----------~~~~~~D~~g~~~~~~ 83 (128)
.+|++.+|++|+||||++.+... ++|..+...|+|++. +.+.++. .-+++||+.|+++|++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 35778899999999999998888 888888888888764 3333321 4588999999999999
Q ss_pred hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+...+++++=+++++||++++.||.+++.|+.++..+..
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY 121 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY 121 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999876654
No 134
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=8.2e-19 Score=107.56 Aligned_cols=93 Identities=31% Similarity=0.562 Sum_probs=78.4
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
+++|++++|||+|+-++.. +.|... ..+|+|+++ ..++.++ +++++||+.|+++|++....|++++|++
T Consensus 1 mllgds~~gktcllir~kd------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~al 74 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKD------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADAL 74 (192)
T ss_pred CccccCccCceEEEEEecc------CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccccee
Confidence 4789999999999888876 555433 346677654 4555666 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhc
Q 033075 96 VFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 96 v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+++||++++.||++.+.|+.++-+
T Consensus 75 lllydiankasfdn~~~wlsei~e 98 (192)
T KOG0083|consen 75 LLLYDIANKASFDNCQAWLSEIHE 98 (192)
T ss_pred eeeeecccchhHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.73 E-value=6.3e-17 Score=107.81 Aligned_cols=95 Identities=26% Similarity=0.400 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----CeEEEEEeCCCCccchhhHHHhhhcc-C
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEA-H 93 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~-~ 93 (128)
+|+++|+++||||||++++.. +.+...+.++ ..+....... +..+.+||+||+.+++..+..+++.+ +
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~------~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~ 74 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK 74 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------CCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC
Confidence 589999999999999999998 5555444333 3333333332 47899999999999999888999998 9
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075 94 AVVFVIDAACP-SRFEDSKTALGKFFGM 120 (128)
Q Consensus 94 ~~v~v~d~~~~-~s~~~~~~~l~~~~~~ 120 (128)
++|+|+|+++. +++..+.+|+.+++..
T Consensus 75 ~vV~VvD~~~~~~~~~~~~~~l~~il~~ 102 (203)
T cd04105 75 GIVFVVDSATFQKNLKDVAEFLYDILTD 102 (203)
T ss_pred EEEEEEECccchhHHHHHHHHHHHHHHH
Confidence 99999999997 7888988888887654
No 136
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-17 Score=105.53 Aligned_cols=107 Identities=32% Similarity=0.549 Sum_probs=94.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
++.-|++++|..|+|||||++.+.. +.. .++.||.....+.+.+.+.+++.+|.+|+..-+..|..|+..+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd--Drl-----~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~ 90 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD--DRL-----GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDA 90 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc--ccc-----cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhce
Confidence 4677999999999999999999986 222 355677777777888999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcccccCCC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERHF 128 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~~ 128 (128)
+++.+|+.|.+.|.+.+..++.++....+++.|+
T Consensus 91 iv~lvda~d~er~~es~~eld~ll~~e~la~vp~ 124 (193)
T KOG0077|consen 91 IVYLVDAYDQERFAESKKELDALLSDESLATVPF 124 (193)
T ss_pred eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcc
Confidence 9999999999999999999999998887777664
No 137
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.69 E-value=6e-18 Score=108.42 Aligned_cols=101 Identities=23% Similarity=0.419 Sum_probs=89.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC--CeEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+|++++|..++||||++.+++. +-|...+..|+|.+. ..+.+. +.++.+||++|+++|....+.|++
T Consensus 18 e~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 3578999999999999999999999 888889999998763 223333 377889999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++.+.++||+-+|+.||+.+.+|..++.++.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET 122 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987764
No 138
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=6.3e-16 Score=99.63 Aligned_cols=98 Identities=24% Similarity=0.340 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCe-EEEEEeCCCCc----cchhhHHHh---hh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQP----GLRSIWEKY---YE 90 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~----~~~~~~~~~---~~ 90 (128)
+|+++|.++||||||++++....... ......|....+..+.+++. .+.+||+||.. ..+.+...+ ++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI----ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc----cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 58999999999999999998611110 01112233344445566665 99999999963 222233333 34
Q ss_pred ccCEEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACP-SRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|+|++++ ++++.+..|++++...
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~ 108 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELY 108 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 69999999999999 7899988888887654
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.67 E-value=2.4e-15 Score=94.86 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+||+++|.+|+|||||++++.. +.++..+.++.+... ..+..++ ..+.+||+||+..+..++..+++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 74 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLG------NKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV 74 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC------CCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence 37999999999999999999998 555555555555543 3366777 7899999999999999999999999
Q ss_pred CEEEEEEECCCc-ccHHHHH-HHHHHHhc
Q 033075 93 HAVVFVIDAACP-SRFEDSK-TALGKFFG 119 (128)
Q Consensus 93 ~~~v~v~d~~~~-~s~~~~~-~~l~~~~~ 119 (128)
+.++.++|+... .++.+.. .|...+..
T Consensus 75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 75 ESSLRVFDIVILVLDVEEILEKQTKEIIH 103 (161)
T ss_pred hEEEEEEEEeeeehhhhhHhHHHHHHHHH
Confidence 999999999887 6676665 55555543
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=1.5e-15 Score=97.07 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEEC-CeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
.|+++|.+++|||||++++... +. +.++... ..|.+.....+.+. +..+.+||+||++++......+++.+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~--~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI--ET-DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc--cc-ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 5899999999999999999851 11 2222222 23444444556665 68999999999998877667778899999
Q ss_pred EEEEECCC
Q 033075 96 VFVIDAAC 103 (128)
Q Consensus 96 v~v~d~~~ 103 (128)
++|+|+++
T Consensus 79 i~V~d~~~ 86 (164)
T cd04171 79 LLVVAADE 86 (164)
T ss_pred EEEEECCC
Confidence 99999987
No 141
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=3.1e-15 Score=106.29 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=75.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-CCeEEEEEeCCCCcc-------chhhHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEKY 88 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~ 88 (128)
...|+++|.|+||||||++++......+ .+....|...+...+.+ ++.++.+||+||..+ +...+..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~v----a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKI----ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCcc----CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence 4579999999999999999998722221 12334566677777777 457899999999532 22334455
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++.++++++|+|+++.++++.+..|..++...
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~ 265 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKY 265 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999988899999998888654
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=5e-15 Score=98.44 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=69.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc---------ch
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG---------LR 82 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~ 82 (128)
+..++|+++|++|||||||++++.. ... .+...+|.......+.+++ ..+.+||+||... +.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 112 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTG------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR 112 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhc------chhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH
Confidence 4568999999999999999999998 321 1223455555555666666 4899999999632 11
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
..+ ..+..+|++++|+|++++.++..+..|...+
T Consensus 113 ~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l 146 (204)
T cd01878 113 STL-EEVAEADLLLHVVDASDPDYEEQIETVEKVL 146 (204)
T ss_pred HHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHH
Confidence 121 2357899999999999998888776655544
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=8.1e-15 Score=104.81 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=70.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEE-CCeEEEEEeCCCC-c--------cchh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ-P--------GLRS 83 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~-~--------~~~~ 83 (128)
..++|+++|.+|+|||||+|++.+ ... .+...+|.+.....+.+ ++.++.+|||+|. + .|..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~ 261 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTG------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA 261 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH
Confidence 458999999999999999999998 322 23446677777777877 4589999999996 2 2222
Q ss_pred hHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
.+ ..+.++|++++|+|++++.+++.+..|..
T Consensus 262 tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~ 292 (351)
T TIGR03156 262 TL-EEVREADLLLHVVDASDPDREEQIEAVEK 292 (351)
T ss_pred HH-HHHHhCCEEEEEEECCCCchHHHHHHHHH
Confidence 22 24689999999999999988877755443
No 144
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=1.2e-14 Score=106.71 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=72.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-cCCcceEEEEEEECCeEEEEEeCCCCccchhh--------H
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------W 85 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~ 85 (128)
+..++|+++|++|+|||||+++++. .+. .....+ ..|.......+.+++..+.+|||+|...+... .
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~--~~~--aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLK--QDR--AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhC--CCC--cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHH
Confidence 4678999999999999999999997 110 111122 22344445677888899999999998655432 2
Q ss_pred HHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
..+++.+|++++|+|++++.+++.. |+.++.
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~ 307 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN 307 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh
Confidence 3567899999999999999888765 776664
No 145
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=1.1e-14 Score=94.73 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCCCCcCC------cceEE----EEEEE-----CCeEEEEEeCCCCccch
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDRIVPT------VGLNI----GRIEV-----SNSKLVFWDLGGQPGLR 82 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~~~~~~~~t------~~~~~----~~~~~-----~~~~~~~~D~~g~~~~~ 82 (128)
+|+++|.+++|||||++++........ ..+...+.++ .|... ..+.+ .+..+.+||+||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987211000 0111122222 12221 12222 23778999999999999
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
..+..+++.+|++++|+|+++..+++....|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~ 113 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY 113 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence 99999999999999999999877766665554
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.62 E-value=4.5e-15 Score=92.64 Aligned_cols=89 Identities=30% Similarity=0.499 Sum_probs=68.8
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCC-CCCCcCCcceEEEEEEEC----CeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 033075 22 ILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (128)
Q Consensus 22 l~G~~~~GKTsl~~~l~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v 96 (128)
++|++|+|||||++++.. ... .....++. .+....... +..+.+||++|...+......+++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~------~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG------GEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHh------CCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE
Confidence 589999999999999998 333 23333444 433333333 478999999999888887788889999999
Q ss_pred EEEECCCcccHHHHHHHHHHH
Q 033075 97 FVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 97 ~v~d~~~~~s~~~~~~~l~~~ 117 (128)
+|+|++++.+++.+..|+...
T Consensus 74 ~v~d~~~~~~~~~~~~~~~~~ 94 (157)
T cd00882 74 LVYDVTDRESFENVKEWLLLI 94 (157)
T ss_pred EEEECcCHHHHHHHHHHHHHH
Confidence 999999999999888874333
No 147
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=2.2e-14 Score=92.34 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccc----h-----hhHHH
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R-----SIWEK 87 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~ 87 (128)
+|+++|.+++|||||++++.. ..+.. ....|.+........++.++.+||+||.... + .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 689999999999999999998 33321 1223555555566667789999999997321 0 11111
Q ss_pred hhhccCEEEEEEECCCccc--HHHHHHHHHHHhc
Q 033075 88 YYEEAHAVVFVIDAACPSR--FEDSKTALGKFFG 119 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~~s--~~~~~~~l~~~~~ 119 (128)
....+|++++|+|++++++ ++....|+..+..
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~ 109 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKP 109 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHh
Confidence 1233689999999998765 4666677777754
No 148
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.60 E-value=1.4e-15 Score=95.51 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=88.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
+.-.+||.++|++..|||||+-...+ +++.+++..+.|++. ..+.+.+ ..+.+||.+|++++..+.+...
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac 90 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIAC 90 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceee
Confidence 45688999999999999999999888 666567777888774 4555555 6788999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
.++-+++|+||+++++.+..+++|+.+....++
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk 123 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK 123 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999876543
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=1.1e-14 Score=94.12 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=67.2
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEEC-CeEEEEEeCCCCcc----chh---hHHHhhhc
Q 033075 22 ILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG----LRS---IWEKYYEE 91 (128)
Q Consensus 22 l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~ 91 (128)
++|++|||||||++++.. ... ......|...+...+.++ +.++.+||+||... .+. ....+++.
T Consensus 1 iiG~~~~GKStll~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN------AKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhc------CCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence 589999999999999998 321 122234445555566677 78999999999632 112 22345678
Q ss_pred cCEEEEEEECCCc------ccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACP------SRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~------~s~~~~~~~l~~~~~~ 120 (128)
+|++++|+|+++. ++++++..|..++...
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLY 109 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHh
Confidence 9999999999998 5788888887777644
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.60 E-value=3.2e-14 Score=94.02 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--C------CCCcCCcceE----EEEEEECCeEEEEEeCCCCccchhhH
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--P------DRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSIW 85 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~------~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~ 85 (128)
-+|+++|.+++|||||+++++.......... . .....+.|.. ...+...+..+.+||+||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999986211110000 0 0001122222 23455667899999999999999999
Q ss_pred HHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
..+++.+|++++|+|+++.. +.....++..+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~ 113 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA 113 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHH
Confidence 99999999999999998742 33333444443
No 151
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.59 E-value=3.5e-14 Score=104.55 Aligned_cols=97 Identities=25% Similarity=0.264 Sum_probs=70.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh--------HH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~ 86 (128)
+..++|+++|.+++|||||++++.. .+. ....+....|.+.....+.+++.++.+|||+|.+.+... ..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~--~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLG--EER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhC--CCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 3568999999999999999999987 110 001122234555556677788899999999998755432 23
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
.+++.+|++++|+|++++.++++...|.
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~ 317 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILE 317 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHH
Confidence 4678999999999999998887664444
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.59 E-value=2.4e-14 Score=102.08 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=64.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc-chhhH-------
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LRSIW------- 85 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~------- 85 (128)
+++..+|+++|.+|||||||++++.. .+.. ........|.+.....+..++.++.+|||||... +..+.
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~--~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIG--EKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhC--Ccee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 35677999999999999999999997 2210 1112333455555566778889999999999743 22211
Q ss_pred HHhhhccCEEEEEEECCCcccHHHHHH
Q 033075 86 EKYYEEAHAVVFVIDAACPSRFEDSKT 112 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~~~~~~ 112 (128)
..+++++|++++|+|.++ ++..+..
T Consensus 126 ~~~l~~aDvil~VvD~~~--s~~~~~~ 150 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK--SFDDITH 150 (339)
T ss_pred HHHhhhCCEEEEEEECCC--CCCHHHH
Confidence 134679999999999665 4545433
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.58 E-value=4.5e-14 Score=100.22 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=72.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~ 87 (128)
....|+++|.++||||||++++......+ .+....|...+...+.+++ .++.+||+||..+ ....+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~v----a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKI----ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 34689999999999999999999722211 1122345566666777777 8999999999642 2223344
Q ss_pred hhhccCEEEEEEECCCc---ccHHHHHHHHHHHhcC
Q 033075 88 YYEEAHAVVFVIDAACP---SRFEDSKTALGKFFGM 120 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~~ 120 (128)
+++.++++++|+|+++. +.++.+..|..++...
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~ 267 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKY 267 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHh
Confidence 45679999999999987 6778887787776543
No 154
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=4.4e-14 Score=90.76 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEEC---CeEEEEEeCCCCccchhhHHHhhhccC
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.|+++|.+++|||||++++.. +.+..... .+.......+... +..+.+||+||+..+..++..++..+|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d 75 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK------TNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTD 75 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh------cccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcC
Confidence 489999999999999999998 44433322 2222223344443 578999999999999888888899999
Q ss_pred EEEEEEECCCcc
Q 033075 94 AVVFVIDAACPS 105 (128)
Q Consensus 94 ~~v~v~d~~~~~ 105 (128)
++++|+|+++..
T Consensus 76 ~il~v~d~~~~~ 87 (168)
T cd01887 76 IAILVVAADDGV 87 (168)
T ss_pred EEEEEEECCCCc
Confidence 999999999854
No 155
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=6.1e-15 Score=92.66 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-----cchhhHHHhhhccC
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH 93 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~ 93 (128)
||+++|++++|||||++++.. ..+ .+.+|.+. .+.. .+||+||.. .++.+.. .++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~------~~~--~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG------EEI--LYKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC------Ccc--ccccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCC
Confidence 899999999999999999987 332 23344332 2222 689999972 2333333 468999
Q ss_pred EEEEEEECCCcccHHHHHHHHH
Q 033075 94 AVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
++++|||++++.++... .|+.
T Consensus 65 ~vilv~d~~~~~s~~~~-~~~~ 85 (142)
T TIGR02528 65 VIALVQSATDPESRFPP-GFAS 85 (142)
T ss_pred EEEEEecCCCCCcCCCh-hHHH
Confidence 99999999999987652 4443
No 156
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.56 E-value=1e-13 Score=94.22 Aligned_cols=94 Identities=26% Similarity=0.256 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------hhHHHhhhc
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKYYEE 91 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 91 (128)
+++++|.+++|||||++++...... .......|.......+.+++.++++||+||..... .....++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~----v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE----VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc----ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 7899999999999999999972211 11123345555566777889999999999964322 233456799
Q ss_pred cCEEEEEEECCCcc-cHHHHHHHHHH
Q 033075 92 AHAVVFVIDAACPS-RFEDSKTALGK 116 (128)
Q Consensus 92 ~~~~v~v~d~~~~~-s~~~~~~~l~~ 116 (128)
+|++++|+|+++++ +.+.+.+.++.
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~ 103 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEG 103 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHH
Confidence 99999999998765 44555444443
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.55 E-value=2e-13 Score=86.53 Aligned_cols=94 Identities=26% Similarity=0.249 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 89 (128)
++|+++|++|+|||||++++...... ........+.......+.+.+.++.+||+||...+.. ....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA---IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE---eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999872110 0111222233333445566778999999999765432 123456
Q ss_pred hccCEEEEEEECCCcccHHHHHHHH
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
..+|++++|+|++++.+....+.+.
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~ 103 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILE 103 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHH
Confidence 7999999999999988887765544
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=88.95 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=83.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhcc---C---CCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHH
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYS---N---VEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE 86 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~---~---~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 86 (128)
+-...||++.|+-++||||+++++..... + ...+.......|+..++..+.+++ ..+.++++||+++|+.+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 34678999999999999999999987321 0 011222233456777788888877 8999999999999999999
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+++++.++++++|.+++..+ ++.+.+..+...
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~ 119 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR 119 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc
Confidence 999999999999999999888 665555554433
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=1.6e-13 Score=101.67 Aligned_cols=91 Identities=22% Similarity=0.172 Sum_probs=64.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (128)
....+|+++|.++||||||++++...... ........|.......+.+.+..+.+||+||.+. +.....
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~---~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA---VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc---cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 34579999999999999999999971110 0111112233334456677788899999999652 334456
Q ss_pred HhhhccCEEEEEEECCCcccHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
.+++.+|++++|+|+++..++.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~ 134 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATAT 134 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHH
Confidence 6789999999999999876653
No 160
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.54 E-value=5e-13 Score=81.44 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc---------hhhHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYY 89 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 89 (128)
+|+++|.+|+|||||++.|++ .+. .........|.......+.+++..+.++|+||-..- .......+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~--~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG--KKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT--STS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhc--ccc-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 689999999999999999997 211 111222334455555667788899999999995421 11223334
Q ss_pred hccCEEEEEEECCC
Q 033075 90 EEAHAVVFVIDAAC 103 (128)
Q Consensus 90 ~~~~~~v~v~d~~~ 103 (128)
..+|++++|+|.++
T Consensus 78 ~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 78 SKSDLIIYVVDASN 91 (116)
T ss_dssp CTESEEEEEEETTS
T ss_pred HHCCEEEEEEECCC
Confidence 78999999999777
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=2.9e-13 Score=99.37 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 89 (128)
.+|+++|.+|||||||++++...... ...+....|.+.....+.+++..+.+|||||... +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 58999999999999999999871110 0111222344455667788889999999999876 333445677
Q ss_pred hccCEEEEEEECCCcccH--HHHHHHHHH
Q 033075 90 EEAHAVVFVIDAACPSRF--EDSKTALGK 116 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~--~~~~~~l~~ 116 (128)
..+|++++|+|++++.+. ..+..|+..
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~ 107 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK 107 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999885443 344455554
No 162
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=1.6e-13 Score=87.24 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=59.4
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccchh------hHHHhhh--c
Q 033075 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--E 91 (128)
Q Consensus 22 l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~ 91 (128)
++|.+++|||||++++.+ ...... ...|.......+.+++..+.+||+||...+.. +...++. .
T Consensus 1 l~G~~~~GKssl~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG------ARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhc------CcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCC
Confidence 589999999999999987 321111 22344455566777888999999999876653 3455664 8
Q ss_pred cCEEEEEEECCCcccHH
Q 033075 92 AHAVVFVIDAACPSRFE 108 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~ 108 (128)
+|++++|+|.++.++..
T Consensus 75 ~d~vi~v~d~~~~~~~~ 91 (158)
T cd01879 75 PDLIVNVVDATNLERNL 91 (158)
T ss_pred CcEEEEEeeCCcchhHH
Confidence 99999999999865543
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.52 E-value=2.9e-13 Score=88.34 Aligned_cols=90 Identities=23% Similarity=0.222 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC-CC-----------CCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-LP-----------PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 86 (128)
+|+++|.+++|||||++.+......... .. ......+.......+...+..+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999882111100 00 00011222233345556678899999999998888888
Q ss_pred HhhhccCEEEEEEECCCcccHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
.+++.+|++++|+|++++.+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~ 102 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ 102 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH
Confidence 9999999999999998866543
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.52 E-value=3.4e-13 Score=93.48 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--------hhHHHhhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKYYE 90 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 90 (128)
+|+++|.+|||||||+|++.+ .+.. ........|..........++.++.+|||||..... .....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~--~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG--QKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC--CcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999998 2110 011111222222222333455789999999965321 12345678
Q ss_pred ccCEEEEEEECCCcccHH
Q 033075 91 EAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~ 108 (128)
.+|++++|+|+++..+.+
T Consensus 79 ~aDvvl~VvD~~~~~~~~ 96 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG 96 (270)
T ss_pred hCCEEEEEEECCCCCchH
Confidence 999999999999877764
No 165
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=2.3e-13 Score=100.66 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=69.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----c---hhhHHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----L---RSIWEK 87 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~ 87 (128)
+....|+|+|.++||||||+++|......+ .+....|...+...+.+.+.++.+||+||... . ......
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI----adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr 232 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI----ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR 232 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc----cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH
Confidence 345689999999999999999999732221 22345667777788888889999999999531 1 122334
Q ss_pred hhhccCEEEEEEECCCc----ccHHHHHHHHHHH
Q 033075 88 YYEEAHAVVFVIDAACP----SRFEDSKTALGKF 117 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~----~s~~~~~~~l~~~ 117 (128)
+++.|+++++|+|+++. +.++....+..++
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence 56789999999999863 3444444444444
No 166
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=3.3e-13 Score=98.41 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCcc----chhhHH---Hhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG----LRSIWE---KYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~---~~~ 89 (128)
..|+++|.++||||||++++++....+ .+....|...+...+.+. +.++.+||+||... ...+.. .++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kI----a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKI----ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCcc----ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 489999999999999999999822221 123345666666677776 68999999999532 222333 345
Q ss_pred hccCEEEEEEECCCc---ccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACP---SRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~ 119 (128)
+.++++++|+|+++. +.++....|..++..
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~ 267 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKL 267 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhh
Confidence 679999999999865 667777777776654
No 167
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.52 E-value=4.4e-13 Score=84.16 Aligned_cols=107 Identities=24% Similarity=0.365 Sum_probs=78.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC---eEEEEEeCCCCccc-hhhHHHhhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN---SKLVFWDLGGQPGL-RSIWEKYYE 90 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~---~~~~~~D~~g~~~~-~~~~~~~~~ 90 (128)
+..|++++|..++|||+|+.+++. .+ ...-.+..+|+... ...++-+. ..+.++||.|.+.+ ..+-..|+.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~y--g~--~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLY--GN--HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHh--cc--CCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 567999999999999999999998 22 11223455666543 34444333 67999999998877 456678889
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
-+|++++|||..|++||+.+...-.+|-.....++.
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEv 119 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEV 119 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999998876655555554444433
No 168
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.52 E-value=2.4e-13 Score=92.04 Aligned_cols=81 Identities=22% Similarity=0.472 Sum_probs=58.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECC-eEEEEEeCCCCccchh-----hHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYY 89 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~-----~~~~~~ 89 (128)
||+++|+++|||||+.+.+.. +..|. ...+|..++...+...+ ..+.+||.||+..+-. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~------~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFH------KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---------GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHc------CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH
Confidence 799999999999999999987 32222 23477777777776554 8999999999875533 356678
Q ss_pred hccCEEEEEEECCCcc
Q 033075 90 EEAHAVVFVIDAACPS 105 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~ 105 (128)
+++.++|+|+|+.+.+
T Consensus 75 ~~v~~LIyV~D~qs~~ 90 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDD 90 (232)
T ss_dssp CTESEEEEEEETT-ST
T ss_pred hccCEEEEEEEccccc
Confidence 9999999999999655
No 169
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=3e-13 Score=88.32 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=61.0
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCc---------
Q 033075 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQP--------- 79 (128)
Q Consensus 11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~--------- 79 (128)
.+.+.+..+|+++|.+++|||||++++.. ..+...+.++.+.. ...+..+ .++.+||+||..
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~ 84 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEK 84 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHH
Confidence 34557889999999999999999999997 33222333333322 1222233 379999999942
Q ss_pred -cchhhHHHhhhc---cCEEEEEEECCCcccHHHH
Q 033075 80 -GLRSIWEKYYEE---AHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 80 -~~~~~~~~~~~~---~~~~v~v~d~~~~~s~~~~ 110 (128)
.+..+...+++. ++++++|+|.+++-+..+.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 85 EKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 233334455553 5799999999876554443
No 170
>PRK04213 GTP-binding protein; Provisional
Probab=99.50 E-value=6.3e-14 Score=92.92 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=55.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC-----------Cccchh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRS 83 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~ 83 (128)
...++|+++|.+|+|||||++++.. ..+.....+........+.+. ++.+||+|| ++.++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTG------KKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHH
Confidence 3578999999999999999999987 443333333333323333333 689999999 455666
Q ss_pred hHHHhhh----ccCEEEEEEECCCc
Q 033075 84 IWEKYYE----EAHAVVFVIDAACP 104 (128)
Q Consensus 84 ~~~~~~~----~~~~~v~v~d~~~~ 104 (128)
.+..++. .++++++|+|.++.
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~ 103 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSF 103 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccc
Confidence 6655654 35677888887653
No 171
>PRK11058 GTPase HflX; Provisional
Probab=99.49 E-value=6e-13 Score=97.35 Aligned_cols=96 Identities=25% Similarity=0.345 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc--chhhHH------Hh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG--LRSIWE------KY 88 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~--~~~~~~------~~ 88 (128)
.+|+++|.+|||||||+|++.. .+. ...+....|.+.....+.+++ ..+.+|||+|..+ ....+. ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~--~~~--~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITE--ARV--YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhC--Cce--eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999987 211 111233456666666777776 4889999999732 122222 33
Q ss_pred hhccCEEEEEEECCCcccHHHHH---HHHHHH
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSK---TALGKF 117 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~---~~l~~~ 117 (128)
++.+|++++|+|++++.+++.+. .++.++
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 58899999999999998877764 445544
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=5.7e-13 Score=98.79 Aligned_cols=99 Identities=26% Similarity=0.277 Sum_probs=67.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc----------cchhhH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSIW 85 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 85 (128)
...+|+++|.+++|||||+++++. .+. .........|.+.....+.+++..+.+|||+|.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~--~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAG--EER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC--CCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence 358999999999999999999997 110 0011122223333345667788889999999952 222222
Q ss_pred -HHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 86 -EKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 86 -~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
..+++.+|++++|+|++++.++..+. ++..+.
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~ 319 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI 319 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH
Confidence 24578999999999999988887763 444443
No 173
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.49 E-value=9.7e-14 Score=90.46 Aligned_cols=98 Identities=28% Similarity=0.409 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccchhhHHH---hhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEK---YYE 90 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~---~~~ 90 (128)
.-.++++|+.|+|||+|+.+|.. ++..+...+. ..+. ...+ .+..+.+.|+||+.+.+..... +..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~------~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN------GKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH------SS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred CceEEEEcCCCCCHHHHHHHHhc------CCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 44689999999999999999999 5444443333 2222 2223 3368999999999998875444 478
Q ss_pred ccCEEEEEEECCC-cccHHHHHHHHHHHhcCcc
Q 033075 91 EAHAVVFVIDAAC-PSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 91 ~~~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~~ 122 (128)
.+.++|||+|.+. ...+.++.+++.+++....
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~ 107 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTE 107 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhh
Confidence 9999999999874 5667888888888876544
No 174
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.48 E-value=4.2e-13 Score=85.71 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc------hhhHHHhh--
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY-- 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~-- 89 (128)
++|+++|.|++|||||+|++.+..... + +....|.......+.+.+..+.++|+||...+ +.+...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-~---n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-G---NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-E---ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-c---CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 589999999999999999999833222 1 12223455556778888999999999994332 23444444
Q ss_pred hccCEEEEEEECCCccc
Q 033075 90 EEAHAVVFVIDAACPSR 106 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s 106 (128)
...|+++.|+|.++.++
T Consensus 77 ~~~D~ii~VvDa~~l~r 93 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLER 93 (156)
T ss_dssp TSSSEEEEEEEGGGHHH
T ss_pred cCCCEEEEECCCCCHHH
Confidence 58999999999987543
No 175
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=6.5e-13 Score=84.19 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=59.0
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHHhhhcc
Q 033075 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEA 92 (128)
Q Consensus 21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 92 (128)
+++|.+|+|||||++++....... .......|...........+..+.+||+||...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI---VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe---ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999998721100 011112233344456667788999999999877543 334567889
Q ss_pred CEEEEEEECCCcccHH
Q 033075 93 HAVVFVIDAACPSRFE 108 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~ 108 (128)
|++++|+|..+..+..
T Consensus 78 d~ii~v~d~~~~~~~~ 93 (157)
T cd01894 78 DVILFVVDGREGLTPA 93 (157)
T ss_pred CEEEEEEeccccCCcc
Confidence 9999999998765443
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.47 E-value=1.2e-12 Score=95.88 Aligned_cols=95 Identities=27% Similarity=0.316 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC--------ccchhhHHHhhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE 90 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~ 90 (128)
+|+++|.+|||||||++++.. ... ....+....|.+.....+.+++..+.+|||||. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~--~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTG--KRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhC--CCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999987 110 001112223444456677788899999999996 334445566789
Q ss_pred ccCEEEEEEECCCcccHH--HHHHHHHH
Q 033075 91 EAHAVVFVIDAACPSRFE--DSKTALGK 116 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~--~~~~~l~~ 116 (128)
.+|++++|+|..+.-+.. .+..|+.+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~ 105 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRK 105 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999998754433 34445443
No 177
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=1.3e-12 Score=94.60 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~ 89 (128)
..|+++|.|+||||||+|++...... .......|.......+.+.+ .++.++|+||... .......++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~----vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK----VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc----ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 37999999999999999999972221 12234456666666777765 5799999999643 112223457
Q ss_pred hccCEEEEEEECC---CcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAA---CPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~---~~~s~~~~~~~l~~~~~ 119 (128)
+.++++++|+|++ +.+.++....|+.++..
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~ 268 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEK 268 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHh
Confidence 8999999999998 55677777777777765
No 178
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.47 E-value=6.3e-13 Score=87.71 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhcc-CCCCCCCC--CCcCCcceEEEEEEEC--------------CeEEEEEeCCCCcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPD--RIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPG 80 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~-~~~~~~~~--~~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 80 (128)
++|+++|..++|||||++++...-. ........ ....|.+.......+. +..+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 5799999999999999999986200 00000000 1123444443444443 57899999999976
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
+..........+|++++|+|+++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~ 109 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQT 109 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHH
Confidence 54444444567899999999988554433
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=1.5e-12 Score=85.81 Aligned_cols=88 Identities=26% Similarity=0.332 Sum_probs=58.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCCC----------cc
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQ----------PG 80 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~----------~~ 80 (128)
......+|+++|.+|+|||||++++.. ..+...+.++.+... ..... +.++.+||+||. +.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~ 92 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTN------RKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEK 92 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHH
Confidence 345678999999999999999999997 433333444444321 11122 478999999994 33
Q ss_pred chhhHHHhhhcc---CEEEEEEECCCcccH
Q 033075 81 LRSIWEKYYEEA---HAVVFVIDAACPSRF 107 (128)
Q Consensus 81 ~~~~~~~~~~~~---~~~v~v~d~~~~~s~ 107 (128)
+......+++.+ +++++++|.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence 444555566544 678888998876544
No 180
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=3.2e-12 Score=82.04 Aligned_cols=91 Identities=23% Similarity=0.157 Sum_probs=60.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc----------hh-hH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RS-IW 85 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~ 85 (128)
.++|+++|.+++|||||++++....... .......+.......+...+..+.+||+||.... .. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---ccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 5789999999999999999998721110 0111112222223455667788999999996433 11 11
Q ss_pred HHhhhccCEEEEEEECCCcccHHHH
Q 033075 86 EKYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
..+++.+|++++|+|++++.+....
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL 103 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH
Confidence 2345789999999999998776543
No 181
>PTZ00099 rab6; Provisional
Probab=99.44 E-value=7.9e-13 Score=86.32 Aligned_cols=76 Identities=21% Similarity=0.411 Sum_probs=65.8
Q ss_pred CCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 46 GLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 46 ~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+.|.+.+.+|+|.++. .+.+++ .++.+||++|++++..++..+++++|++++|||++++++|+.+..|+.++....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 5677788899997753 345555 789999999999999999999999999999999999999999999999987653
No 182
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.44 E-value=3e-12 Score=87.21 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+|+++|..++|||||+++++....... + ...+ ....++......+.+++.++.+||+||..+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 479999999999999999987322110 0 0000 1111233334566778899999999999999888
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
+..+++.+|++++|+|+++..+. ....++..+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~ 112 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL 112 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH
Confidence 88999999999999999986543 333444443
No 183
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4.1e-13 Score=86.85 Aligned_cols=100 Identities=17% Similarity=0.368 Sum_probs=89.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC----eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..++++++|+.+.||||+.++.+. +++...+.+|+|.......+.. .++..||+.|++.+..+...|+-.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt------geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT------GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc------ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence 478999999999999999999999 9999999999998866554432 789999999999999998989889
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
..+.+++||++.+-.+.++..|-.++.+..
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~ 112 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR 112 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence 999999999999999999999999887654
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=3.4e-12 Score=93.54 Aligned_cols=92 Identities=23% Similarity=0.181 Sum_probs=63.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-----------
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI----------- 84 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------- 84 (128)
..++++++|.+++|||||+++++. .+. .........|.......+..++..+.+||+||..+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~--~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLG--EER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHC--CCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 358999999999999999999987 110 001112222333334556677789999999996543221
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
...+++.+|++++|+|++++.+....
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~ 273 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL 273 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH
Confidence 12467899999999999988776654
No 185
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.41 E-value=2.3e-12 Score=92.02 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=64.6
Q ss_pred CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCcccc
Q 033075 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~~ 124 (128)
|.|++...+.+++..+.+||++|+...+..|..++.++++++||+|+++ ...+.+....++.+++++...
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 6777777888888999999999999999999999999999999999997 346888889999999988777
Q ss_pred cCC
Q 033075 125 ERH 127 (128)
Q Consensus 125 ~~~ 127 (128)
+.|
T Consensus 251 ~~p 253 (342)
T smart00275 251 NTS 253 (342)
T ss_pred CCc
Confidence 665
No 186
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.41 E-value=4.5e-12 Score=95.91 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=64.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECC-eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+..+|+++|..++|||||++++.. ..+.....+ |.......+.+++ ..+.+|||||++.|..++...+..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~------~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~ 158 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRK------TKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKV 158 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh------CCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhcc
Confidence 3567999999999999999999987 333333222 2222223455544 489999999999999999988999
Q ss_pred cCEEEEEEECCCcc
Q 033075 92 AHAVVFVIDAACPS 105 (128)
Q Consensus 92 ~~~~v~v~d~~~~~ 105 (128)
+|++++|+|+++..
T Consensus 159 aDiaILVVda~dgv 172 (587)
T TIGR00487 159 TDIVVLVVAADDGV 172 (587)
T ss_pred CCEEEEEEECCCCC
Confidence 99999999988743
No 187
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.41 E-value=3e-12 Score=85.59 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=60.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC-------------------------CCC--CCCcCCcceEEEEEEECCeEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVSNSKLV 71 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-------------------------~~~--~~~~~t~~~~~~~~~~~~~~~~ 71 (128)
+|+++|.+++|||||+++|+....-+.. ..+ .+...|.......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999762221100 000 0011233333445566778999
Q ss_pred EEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
+||+||..+|.......++.+|++++|+|+++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~ 114 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV 114 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence 9999999887666666789999999999998753
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.41 E-value=4.9e-12 Score=95.97 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCCcC------CcceEE----EEEEE---CC--eEEEEEeCCCCcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVP------TVGLNI----GRIEV---SN--SKLVFWDLGGQPG 80 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~~~------t~~~~~----~~~~~---~~--~~~~~~D~~g~~~ 80 (128)
.-+++++|..++|||||+++++....-... .+...+.. ..|..+ ..+.+ ++ +.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 348999999999999999999873211100 11112211 123332 22333 22 7899999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~ 116 (128)
|...+..+++.+|++++|+|+++..+.+....|...
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~ 118 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA 118 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH
Confidence 999999999999999999999998777766665543
No 189
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.40 E-value=5.1e-12 Score=83.72 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------hhH----H
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIW----E 86 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~----~ 86 (128)
++|+++|.+|+||||++|.++. .+...........|.........+++.++.++||||-.... ... .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg--~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILG--REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhC--CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999997 22111111122344555556667788999999999954331 111 1
Q ss_pred HhhhccCEEEEEEECCCc-ccHHHHHHHHHHHhc
Q 033075 87 KYYEEAHAVVFVIDAACP-SRFEDSKTALGKFFG 119 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~ 119 (128)
....+.|++++|+++.+. .....+.+++.+++.
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg 112 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFG 112 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC
Confidence 123568999999998862 223344555655543
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.40 E-value=9.1e-12 Score=79.24 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=55.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~ 87 (128)
...+|+++|++|+|||||++++... +... .......+...........+..+.+||+||...... ....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ--KISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC--ceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999871 1100 000111111111223334457899999999654322 2344
Q ss_pred hhhccCEEEEEEECCCc
Q 033075 88 YYEEAHAVVFVIDAACP 104 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~ 104 (128)
.+..+|++++|+|.+++
T Consensus 79 ~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 79 ALKDVDLVLFVVDASEP 95 (168)
T ss_pred HHHhCCEEEEEEECCCc
Confidence 57889999999999986
No 191
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.40 E-value=1.2e-11 Score=85.73 Aligned_cols=89 Identities=24% Similarity=0.199 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCC--CCC---------CCCC-------cCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP---------PDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~---------~~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
-+|+++|.+++|||||+++++.....+. +.. ...+ ..++......+++.+..+.+||+||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4699999999999999999986321110 100 0000 112223344677788999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCccc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+|......+++.+|++++|+|.++...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~ 109 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE 109 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc
Confidence 888777778899999999999987543
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.40 E-value=3.4e-12 Score=96.54 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE----------------CCeEEEEEeCCCCcc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQPG 80 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~ 80 (128)
.--|+++|.+++|||||++++.. .......+.....++|........ ....+.+|||||++.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~--~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRG--SAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--cccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 34589999999999999999987 222112222233344433222111 012488999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCC---cccHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAAC---PSRFEDS 110 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~ 110 (128)
|..++..+++.+|++++|+|+++ +.+++.+
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i 114 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEAL 114 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH
Confidence 99999999999999999999997 4455544
No 193
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.40 E-value=3.8e-12 Score=90.12 Aligned_cols=73 Identities=23% Similarity=0.447 Sum_probs=63.9
Q ss_pred CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc----------ccHHHHHHHHHHHhcCcccc
Q 033075 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~l~~~~~~~~~~ 124 (128)
|.|+....+.+++..+.+||++|++..+..|..++.++++++||+|+++- ..+.+....++.+++++...
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 66777777888889999999999999999999999999999999999973 56888888999999887776
Q ss_pred cCC
Q 033075 125 ERH 127 (128)
Q Consensus 125 ~~~ 127 (128)
+.|
T Consensus 228 ~~p 230 (317)
T cd00066 228 NTS 230 (317)
T ss_pred CCC
Confidence 665
No 194
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.39 E-value=1.2e-11 Score=82.96 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC----C-----CCCC--CcCCcceE----EEEEEEC-----CeEEEEEeCCCC
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG----L-----PPDR--IVPTVGLN----IGRIEVS-----NSKLVFWDLGGQ 78 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~----~-----~~~~--~~~t~~~~----~~~~~~~-----~~~~~~~D~~g~ 78 (128)
+|+++|..++|||||+.+++........ . ..+. .....+.. ...+.+. ...+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999873221100 0 0000 00111111 1122221 278999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.++......++..+|++++|+|+++..+... ..++...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~ 119 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHA 119 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 9998888888999999999999988766543 3444444
No 195
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.39 E-value=8.6e-12 Score=86.36 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC------------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+|+++|.+|+|||||+++++....... +.... ....++......+.+++.++.+||+||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 489999999999999999976221110 00000 0122333344567778899999999999888778
Q ss_pred HHHhhhccCEEEEEEECCCcccHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
...+++.+|++++|+|.++.....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~ 104 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG 104 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH
Confidence 888999999999999999876554
No 196
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.39 E-value=7.7e-12 Score=96.34 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=63.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC----cCCcceEEEEEEEC--CeEEEEEeCCCCccchhhHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~ 88 (128)
.+...|+++|..++|||||++++.. ..+.... ....+.....+... +..+.+||+||++.|..++..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~------~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg 315 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRK------TQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRG 315 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHh------ccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHH
Confidence 4567999999999999999999987 3222211 11223222233332 3889999999999999999999
Q ss_pred hhccCEEEEEEECCCcc
Q 033075 89 YEEAHAVVFVIDAACPS 105 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~ 105 (128)
++.+|++++|+|+++..
T Consensus 316 ~~~aDiaILVVDA~dGv 332 (742)
T CHL00189 316 ANVTDIAILIIAADDGV 332 (742)
T ss_pred HHHCCEEEEEEECcCCC
Confidence 99999999999988743
No 197
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.37 E-value=1.3e-11 Score=95.72 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=65.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.+...|+++|..++|||||+++|.. +.+...... |.......+.+++..+.+|||||++.|..++...++.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~------~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRK------TNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh------CCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhC
Confidence 4677899999999999999999987 222222111 11122245666788999999999999999999889999
Q ss_pred CEEEEEEECCCc
Q 033075 93 HAVVFVIDAACP 104 (128)
Q Consensus 93 ~~~v~v~d~~~~ 104 (128)
|++++|||+++.
T Consensus 362 DiaILVVdAddG 373 (787)
T PRK05306 362 DIVVLVVAADDG 373 (787)
T ss_pred CEEEEEEECCCC
Confidence 999999999874
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=9.2e-12 Score=96.34 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCCcc----------chhhH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSIW 85 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~ 85 (128)
..+|+++|.++||||||+++++. .+. ..... ...|.+.....+.+++.++.+|||+|..+ +..+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~--~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTH--EER--AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC--ccc--cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHH
Confidence 47999999999999999999997 210 01122 22334444456677888899999999531 22221
Q ss_pred -HHhhhccCEEEEEEECCCcccHHHHH
Q 033075 86 -EKYYEEAHAVVFVIDAACPSRFEDSK 111 (128)
Q Consensus 86 -~~~~~~~~~~v~v~d~~~~~s~~~~~ 111 (128)
..+++.+|++++|+|+++..+++...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~ 552 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK 552 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH
Confidence 23468899999999999988877664
No 199
>PRK00089 era GTPase Era; Reviewed
Probab=99.37 E-value=9.9e-12 Score=86.98 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=54.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECCeEEEEEeCCCCccch--------hhHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGGQPGLR--------SIWE 86 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g~~~~~--------~~~~ 86 (128)
+.-.|+++|.+|||||||+|++++ .+... .. ....|..... .....++.++.++||||..... ....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g--~~~~~-vs-~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVG--QKISI-VS-PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhC--Cceee-cC-CCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 456799999999999999999987 22100 00 1111222222 2233345899999999965432 2223
Q ss_pred HhhhccCEEEEEEECCC
Q 033075 87 KYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~ 103 (128)
..+..+|++++|+|+++
T Consensus 80 ~~~~~~D~il~vvd~~~ 96 (292)
T PRK00089 80 SSLKDVDLVLFVVDADE 96 (292)
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 45678999999999988
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.36 E-value=7.5e-12 Score=91.78 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=65.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-----------C--CCCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-----------P--DRIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-----------~--~~~~~t~~~~~~~~~~~ 66 (128)
.++.++++++|..++|||||+++|+.....+. +.. + .+.-.|++.....++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999985221110 000 0 01223444455666677
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
+.++.+||+||+++|.......++.+|++++|+|+++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 7999999999998886655555689999999999987
No 201
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=3.1e-11 Score=80.99 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-------hhhHHH---
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEK--- 87 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~--- 87 (128)
++|+|+|.+|+||||++|.++. .+...........|.........+.+..+.++||||-.+. ......
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg--~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILG--KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT--SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc--ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998 3221111122234555556666889999999999993321 111111
Q ss_pred -hhhccCEEEEEEECCCcc-cHHHHHHHHHHHhcCc
Q 033075 88 -YYEEAHAVVFVIDAACPS-RFEDSKTALGKFFGMR 121 (128)
Q Consensus 88 -~~~~~~~~v~v~d~~~~~-s~~~~~~~l~~~~~~~ 121 (128)
...+.+++++|+...+-. .-..+.+++.+++...
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~ 114 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE 114 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH
Confidence 234689999999988422 2334455666666543
No 202
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.35 E-value=6.2e-12 Score=87.65 Aligned_cols=99 Identities=21% Similarity=0.203 Sum_probs=72.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----c---hhhHHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----L---RSIWEK 87 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~ 87 (128)
....+++++|.|++|||||++.+.+..+ +..+..+.|.......+.+++.++++.|+||.-. - ......
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s----eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS----EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc----cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeee
Confidence 4567999999999999999999998322 2333445566666778999999999999997211 1 122345
Q ss_pred hhhccCEEEEEEECCCccc-HHHHHHHHHHH
Q 033075 88 YYEEAHAVVFVIDAACPSR-FEDSKTALGKF 117 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~~s-~~~~~~~l~~~ 117 (128)
..++||++++|+|+..+.+ .+.+...+++.
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 5699999999999997655 66665555553
No 203
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=89.58 Aligned_cols=87 Identities=26% Similarity=0.359 Sum_probs=65.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH--------H
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--------E 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~ 86 (128)
+.-+|++++|.||+|||||+|.+++ .+. .-..+..-.|.++-.+.+.++|+++.+.||.|.++..... .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~--~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLG--RDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhc--CCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 4678999999999999999999998 221 0111222345556668899999999999999977553322 3
Q ss_pred HhhhccCEEEEEEECCCc
Q 033075 87 KYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~ 104 (128)
..+.+||.+++|+|.+.+
T Consensus 292 ~~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 292 KAIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHHhCCEEEEEEeCCCC
Confidence 446899999999999985
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.35 E-value=2.9e-11 Score=93.61 Aligned_cols=87 Identities=25% Similarity=0.214 Sum_probs=59.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (128)
....+|+++|.+++|||||+++++. ... ....+....|........++++..+.+|||||... +.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~--~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILG--RRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhC--CCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 4457899999999999999999987 110 00011111222223345566778999999999653 333445
Q ss_pred HhhhccCEEEEEEECCCc
Q 033075 87 KYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~ 104 (128)
.+++.+|++++|+|+++.
T Consensus 350 ~~~~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVG 367 (712)
T ss_pred HHHHhCCEEEEEEECCCC
Confidence 677899999999999864
No 205
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.34 E-value=1.3e-11 Score=82.28 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCCCcCCcceEEEEEEEC---------------------------C--
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVS---------------------------N-- 67 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~---------------------------~-- 67 (128)
++|+++|..++|||||+..+.....+. ..+... ..++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELER--NITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGE 78 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEc--CCceeecccccccccccCcCCCCccccccccccccccccccCCc
Confidence 478999999999999999997631111 011000 01111111111110 2
Q ss_pred ----eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 68 ----SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 68 ----~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
..+.+||+||++.+.......+..+|++++|+|++++
T Consensus 79 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~ 119 (203)
T cd01888 79 TKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP 119 (203)
T ss_pred cccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence 6799999999998877777777889999999999873
No 206
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=2.6e-11 Score=93.60 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=74.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------CCCCC-------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
....+|+++|..++|||||+++++....... +.+.. ....|+......+.+.+..+.+||+||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999986322110 00000 123355555567778889999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~ 113 (128)
+...+..+++.+|++++|+|+++..+......|
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 988889999999999999999987776654333
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.33 E-value=4.5e-11 Score=82.92 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=64.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--CC----------CCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--GL----------PPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~----------~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+|+++|.+++|||||+++++....... +. .+. +...|+......+.+++.++.++|+||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 479999999999999999975222110 00 000 1112333334667788899999999999988888
Q ss_pred HHHhhhccCEEEEEEECCCcc
Q 033075 85 WEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~ 105 (128)
+..+++.+|++++|+|+.+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~ 101 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV 101 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC
Confidence 888999999999999998754
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.33 E-value=1.3e-11 Score=93.55 Aligned_cols=95 Identities=25% Similarity=0.352 Sum_probs=64.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----C------------eEEEEEeCCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----N------------SKLVFWDLGGQ 78 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~------------~~~~~~D~~g~ 78 (128)
.+...|+++|..++|||||++++.. .......+.....++|......... + ..+.+||+||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~--~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRG--TAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC--cccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3556799999999999999999976 2221122222223344332221110 0 12789999999
Q ss_pred ccchhhHHHhhhccCEEEEEEECCC---cccHHHHH
Q 033075 79 PGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK 111 (128)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~ 111 (128)
+.|..++...++.+|++++|+|+++ +.+++.+.
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~ 117 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN 117 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence 9999888888899999999999997 55555553
No 209
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=3e-11 Score=88.76 Aligned_cols=91 Identities=24% Similarity=0.206 Sum_probs=61.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-cCCcceEEEEEEECCeEEEEEeCCCCccchh----------h
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------I 84 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~ 84 (128)
..++|+++|.+++|||||+++++. .+. ...... ..|.......+..++..+.+||+||...... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~--~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLG--EER--VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC--CCc--eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 568999999999999999999986 110 011111 1222222344556778999999999543211 1
Q ss_pred -HHHhhhccCEEEEEEECCCcccHHHH
Q 033075 85 -WEKYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 85 -~~~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
...+++.+|++++|+|++++.+....
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDL 274 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 12467899999999999988776554
No 210
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.32 E-value=9.6e-12 Score=79.85 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=52.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH----HHhhhccCE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW----EKYYEEAHA 94 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~ 94 (128)
+|+++|.+++|||||++++.. . +. ....+. .+.+... .+||+||.......+ ...++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~------~-~~-~~~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG------N-YT-LARKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC------C-Cc-cCccce-----EEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 799999999999999999775 2 11 111222 2233332 379999973222111 233689999
Q ss_pred EEEEEECCCcccHHHHHHHHHHH
Q 033075 95 VVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
+++|+|+++.+++.. .|+.++
T Consensus 68 il~v~d~~~~~s~~~--~~~~~~ 88 (158)
T PRK15467 68 LIYVHGANDPESRLP--AGLLDI 88 (158)
T ss_pred EEEEEeCCCcccccC--HHHHhc
Confidence 999999998876532 355443
No 211
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.32 E-value=4.8e-11 Score=84.43 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=53.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE-----------------EEC---CeEEEEEeCCCC-
Q 033075 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-----------------EVS---NSKLVFWDLGGQ- 78 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-----------------~~~---~~~~~~~D~~g~- 78 (128)
|+++|.+++|||||++++................|+.|...... ..+ ...+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998222211111112234444322110 012 267999999996
Q ss_pred ---ccchhhHHH---hhhccCEEEEEEECCC
Q 033075 79 ---PGLRSIWEK---YYEEAHAVVFVIDAAC 103 (128)
Q Consensus 79 ---~~~~~~~~~---~~~~~~~~v~v~d~~~ 103 (128)
++.+.+-.. .+++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 444444344 5899999999999984
No 212
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.31 E-value=1.8e-11 Score=92.82 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
+.|+++|..++|||||++++... +. +.++.+.. .|+......+.+++..+.+||+||++.|.......+.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~--~~-d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI--AA-DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc--cC-cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 36899999999999999999861 11 22222322 233344456677778999999999999888777788999999
Q ss_pred EEEEECCC---cccHHHH
Q 033075 96 VFVIDAAC---PSRFEDS 110 (128)
Q Consensus 96 v~v~d~~~---~~s~~~~ 110 (128)
++|+|+++ +.+++++
T Consensus 78 ILVVDa~~G~~~qT~ehl 95 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHL 95 (581)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 99999987 3444444
No 213
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=88.69 Aligned_cols=95 Identities=25% Similarity=0.221 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc---------hhhHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKY 88 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~ 88 (128)
..|+++|.||||||||+|+|..+..- -..+..-.|.+-.+....+.+..+.+.||+|-+.. .......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A---IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA---IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee---EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 56999999999999999999972111 11123334555556788899999999999995532 2244456
Q ss_pred hhccCEEEEEEECCCcc--cHHHHHHHHH
Q 033075 89 YEEAHAVVFVIDAACPS--RFEDSKTALG 115 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~--s~~~~~~~l~ 115 (128)
+..||+++||+|....- .-+++..|+.
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr 109 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILR 109 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 78999999999988732 2244445554
No 214
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.31 E-value=4.2e-11 Score=93.09 Aligned_cols=87 Identities=25% Similarity=0.361 Sum_probs=58.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh----------hH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW 85 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~ 85 (128)
+.++|+++|.+|+|||||+|++....... .+....|.......+..++.++.++|+||..++.. ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v----gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV----GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc----CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 45789999999999999999998721111 11111233333345566678999999999876532 12
Q ss_pred HHhh--hccCEEEEEEECCCccc
Q 033075 86 EKYY--EEAHAVVFVIDAACPSR 106 (128)
Q Consensus 86 ~~~~--~~~~~~v~v~d~~~~~s 106 (128)
..++ ..+|++++|+|.++.++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler 100 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER 100 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh
Confidence 2333 47999999999988654
No 215
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=5.6e-11 Score=86.32 Aligned_cols=81 Identities=19% Similarity=0.328 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE---------------------ECC---eEEEEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---------------------VSN---SKLVFW 73 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~---~~~~~~ 73 (128)
++|+++|.+++|||||++++....... .+....|+..+..... .++ .++++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~----~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~ 77 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI----ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELI 77 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc----cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEE
Confidence 689999999999999999999822211 1112233333322211 122 678999
Q ss_pred eCCCC----ccchhhHHHh---hhccCEEEEEEECC
Q 033075 74 DLGGQ----PGLRSIWEKY---YEEAHAVVFVIDAA 102 (128)
Q Consensus 74 D~~g~----~~~~~~~~~~---~~~~~~~v~v~d~~ 102 (128)
|+||. .....+-..+ ++++|++++|+|+.
T Consensus 78 D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 78 DVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred EcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 99993 2333333344 79999999999997
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.31 E-value=4.7e-11 Score=90.67 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=66.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--------CCCCcCCcceE----EEEEEECCeEEEEEeCCCCccchh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--------PDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--------~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
...+|+++|..++|||||+++++.......... ......+.|.+ ...+.+++..+.+||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999987322110000 00112233433 335566779999999999999999
Q ss_pred hHHHhhhccCEEEEEEECCCcc
Q 033075 84 IWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.+..+++.+|++++|+|+++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~ 105 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP 105 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc
Confidence 9999999999999999998754
No 217
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.31 E-value=7.6e-11 Score=79.61 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC----CCCC--------CCCcCCcceEEEEEEEC----------CeEEEEEeCC
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE----GLPP--------DRIVPTVGLNIGRIEVS----------NSKLVFWDLG 76 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~----~~~~--------~~~~~t~~~~~~~~~~~----------~~~~~~~D~~ 76 (128)
+|+++|..++|||||+.+|+....... +... .+...|+......+.+. +..+.+||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999987322110 0000 00011121111222333 5789999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
|+..|......+++.+|++++|+|+++....+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 999999988999999999999999998766544
No 218
>COG1159 Era GTPase [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=84.98 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=57.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh--------hHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~ 87 (128)
+.--++++|.|++|||||+|++.+ .+.. -.+.....|...-...++.++.++.+.||||-..-+. ....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G--~Kis-IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVG--QKIS-IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhc--CceE-eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 455789999999999999999998 3221 1111222222222244556679999999999543322 2234
Q ss_pred hhhccCEEEEEEECCC
Q 033075 88 YYEEAHAVVFVIDAAC 103 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~ 103 (128)
.+..+|+++||+|+++
T Consensus 82 sl~dvDlilfvvd~~~ 97 (298)
T COG1159 82 ALKDVDLILFVVDADE 97 (298)
T ss_pred HhccCcEEEEEEeccc
Confidence 4578999999999887
No 219
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-14 Score=93.39 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=88.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC---eEEEEEeCCCCccchhhHHHhhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+|+.++|.-++|||+++++... ..+...+..|+|... ....+++ +++.+||+.|++++..+..-|++
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk 97 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVH------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK 97 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHH------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence 457999999999999999999998 666667778888653 4555665 67899999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcccc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~ 124 (128)
.+++..+|||+++...|+....|..++.....++
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLp 131 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLP 131 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCC
Confidence 9999999999999999999999999987665443
No 220
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.30 E-value=5e-11 Score=90.44 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCC--C----------CCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP--P----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 86 (128)
+|+++|..++|||||+.+++.......... . .+...|+......+.+++..+.+||+||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999987322110000 0 0011233333456778889999999999999998889
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+++.+|++++|+|+++.. ....+.|+..+..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~ 114 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE 114 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH
Confidence 9999999999999998743 3445556665544
No 221
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.30 E-value=5e-11 Score=78.46 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=67.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------------CCC--CCCcCCcceEEEEEE--ECCeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPP--DRIVPTVGLNIGRIE--VSNSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~------------~~~--~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 79 (128)
+..+|+++|..++|||||+.+|+........ ..+ ....-|.......+. ..+..+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999873322100 000 011234444455665 667999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCccc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+|.......++.+|++++|+|+.+.-.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~ 108 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ 108 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST
T ss_pred ceeecccceecccccceeeeecccccc
Confidence 998888888999999999999987644
No 222
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.30 E-value=5.7e-11 Score=74.71 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=59.2
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCccchh-------hHHHhhhccC
Q 033075 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRS-------IWEKYYEEAH 93 (128)
Q Consensus 22 l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 93 (128)
++|.+|+|||||++++....... .......+........... +..+.+||+||...... ....+++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 58999999999999998721110 1112222333333344444 57899999999765532 3345778999
Q ss_pred EEEEEEECCCcccHHHHH
Q 033075 94 AVVFVIDAACPSRFEDSK 111 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~ 111 (128)
++++|+|.++..+.....
T Consensus 78 ~il~v~~~~~~~~~~~~~ 95 (163)
T cd00880 78 LILFVVDADLRADEEEEK 95 (163)
T ss_pred EEEEEEeCCCCCCHHHHH
Confidence 999999999988777664
No 223
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.3e-11 Score=81.52 Aligned_cols=100 Identities=25% Similarity=0.379 Sum_probs=77.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh---cc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---EA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~ 92 (128)
..-.++++|+.+||||+|+.++.. +..+..+ +++..+...+.+++...++.|.||+.+.+.....++. .+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~Tv-tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLIT------GSHRGTV-TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhc------CCccCee-eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 345799999999999999999998 5444333 4444555666677778999999999999887777776 79
Q ss_pred CEEEEEEECCC-cccHHHHHHHHHHHhcCcc
Q 033075 93 HAVVFVIDAAC-PSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 93 ~~~v~v~d~~~-~~s~~~~~~~l~~~~~~~~ 122 (128)
-++|||+|..- +.....+.+++.+++.+..
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~ 140 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSR 140 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhc
Confidence 99999999774 5566777788888776654
No 224
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.30 E-value=1.6e-11 Score=90.05 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=66.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-----------CCC--CCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PPD--RIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~-----------~~~--~~~~t~~~~~~~~~~~ 66 (128)
.++.++++++|..++|||||+.+|+....... +. .+. +...|++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999986211110 00 000 1122333334555666
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+..+.+||+||++.|.......+..+|++++|+|+++.++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~ 123 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF 123 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc
Confidence 7899999999998886655666789999999999998754
No 225
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.29 E-value=7.5e-11 Score=89.68 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=68.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC-----CCCCCC--CcCCcceE----EEEEEEC-----CeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE-----GLPPDR--IVPTVGLN----IGRIEVS-----NSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-----~~~~~~--~~~t~~~~----~~~~~~~-----~~~~~~~D~~g~~ 79 (128)
..-+++++|..++|||||+.+++....... ....+. .....|.. ...+.+. ++.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 345899999999999999999987322110 011000 01122222 2233332 3789999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
+|...+..+++.+|++++|+|+++..+.+....|..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~ 121 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 121 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999999998766665555443
No 226
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.29 E-value=1.9e-11 Score=90.49 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=78.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
++.+||+++|+.|+|||||+-.+.. .++++...+..... ...++......++.|++...+-+......++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~------eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLE------EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHh------hhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 5789999999999999999999999 77776665544421 123333447799999997777666767888999
Q ss_pred CEEEEEEECCCcccHHHHHH-HHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKT-ALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~-~l~~~~~~ 120 (128)
|+++++|+++++++++.+.. |+-.+.+.
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~~ 109 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQL 109 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence 99999999999999999977 55555443
No 227
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=84.23 Aligned_cols=90 Identities=22% Similarity=0.389 Sum_probs=63.6
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECCeEEEEEeCCCCcc-------chh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSKLVFWDLGGQPG-------LRS 83 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~D~~g~~~-------~~~ 83 (128)
+...+.++++++|..|+||||++|++.. .+ ...........+.. .....+++..+.+||+||.++ ++.
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~--~~--~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~ 109 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQ--GE--VKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ 109 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHh--cc--CceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH
Confidence 3456889999999999999999999996 21 11111111122111 123345568899999999554 677
Q ss_pred hHHHhhhccCEEEEEEECCCcc
Q 033075 84 IWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
....++...|+++.+.++.|+.
T Consensus 110 ~~~d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HHHHHhhhccEEEEeccCCCcc
Confidence 7888889999999999988865
No 228
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.26 E-value=7.8e-11 Score=75.13 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCcc----------chhhHH
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG----------LRSIWE 86 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 86 (128)
.|+++|.+|+|||||++.+.+ +.......++.+.. ....... ..+.+||+||... +.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 479999999999999999995 22222233333322 2222222 3899999999432 333444
Q ss_pred Hhhh---ccCEEEEEEECCCccc--HHHHHHHHHHH
Q 033075 87 KYYE---EAHAVVFVIDAACPSR--FEDSKTALGKF 117 (128)
Q Consensus 87 ~~~~---~~~~~v~v~d~~~~~s--~~~~~~~l~~~ 117 (128)
.++. .++++++++|..+..+ ...+..|+...
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~ 109 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL 109 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc
Confidence 4554 4578889999886532 23445566554
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.25 E-value=5.6e-11 Score=78.86 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=46.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce---E--EEEEEEC-CeEEEEEeCCCCccchhhHHHh--
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL---N--IGRIEVS-NSKLVFWDLGGQPGLRSIWEKY-- 88 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~---~--~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~-- 88 (128)
.+||+++|.+|+|||||+|.+.. ...+.....+.+. . ...+... ..++.+||+||..........|
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g------~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRG------VGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------cCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH
Confidence 36899999999999999999987 2221111111111 0 1111111 2478999999975432222222
Q ss_pred ---hhccCEEEEEEE
Q 033075 89 ---YEEAHAVVFVID 100 (128)
Q Consensus 89 ---~~~~~~~v~v~d 100 (128)
+..+|+++++.+
T Consensus 75 ~~~~~~~d~~l~v~~ 89 (197)
T cd04104 75 EMKFSEYDFFIIISS 89 (197)
T ss_pred HhCccCcCEEEEEeC
Confidence 567888888743
No 230
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.25 E-value=5.1e-11 Score=89.30 Aligned_cols=91 Identities=21% Similarity=0.186 Sum_probs=65.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CCCC--------C-CC---C----cCCcceEEEEEEECCeEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLP--------P-DR---I----VPTVGLNIGRIEVSNSKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~~~--------~-~~---~----~~t~~~~~~~~~~~~~~~~~~D~~ 76 (128)
.+..+|+++|..++|||||.++++.....+ .+.. . .. . ..++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356799999999999999999997521110 0100 0 00 0 011222234567788999999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
|+.+|......+++.+|++++|+|+++.-
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence 99999887778889999999999998754
No 231
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.24 E-value=1.1e-10 Score=77.33 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC----------CCCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~----------~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
++++++++|..++|||||+++|+........ ..+. ....|.......++.++.++.+.|+||...|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3578999999999999999999863211100 0000 111122222234445568899999999988877
Q ss_pred hHHHhhhccCEEEEEEECCCc
Q 033075 84 IWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.....+..+|++++|+|+...
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDG 101 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCC
Confidence 667777899999999998864
No 232
>PTZ00258 GTP-binding protein; Provisional
Probab=99.23 E-value=2.6e-10 Score=82.43 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=58.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g 77 (128)
...++|+++|.|++|||||++++....... .+....|+..+...+.+.+ .++.+.|+||
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v----~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPA----ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccc----cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 356799999999999999999997722211 1223445556655665543 3589999999
Q ss_pred Ccc-------chhhHHHhhhccCEEEEEEECC
Q 033075 78 QPG-------LRSIWEKYYEEAHAVVFVIDAA 102 (128)
Q Consensus 78 ~~~-------~~~~~~~~~~~~~~~v~v~d~~ 102 (128)
... ........++++|++++|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 431 2223344568899999999985
No 233
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.23 E-value=4.7e-10 Score=77.00 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=55.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--h--------h
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--S--------I 84 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--~--------~ 84 (128)
...++|+++|.+|+|||||+|+++. .... ........|..........++.++.++||||-.... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg--~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFG--ERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC--CCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 4679999999999999999999998 2210 011111233444444556778899999999965441 1 1
Q ss_pred HHHhhh--ccCEEEEEEECCC
Q 033075 85 WEKYYE--EAHAVVFVIDAAC 103 (128)
Q Consensus 85 ~~~~~~--~~~~~v~v~d~~~ 103 (128)
...++. ..+++++|..++.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCC
Confidence 223333 5678888876554
No 234
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.23 E-value=4.7e-10 Score=78.69 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=53.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------HHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------WEK 87 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~ 87 (128)
...++|+++|.+|+||||++|+++. .+... .......+..........++.++.++||||....... ...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG--~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIG--ERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhC--CCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 4688999999999999999999997 22100 0001111122222344567899999999996644221 111
Q ss_pred hh--hccCEEEEEEECC
Q 033075 88 YY--EEAHAVVFVIDAA 102 (128)
Q Consensus 88 ~~--~~~~~~v~v~d~~ 102 (128)
++ ...|++++|..++
T Consensus 113 ~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLD 129 (313)
T ss_pred HhhcCCCCEEEEEeccC
Confidence 22 1588999996544
No 235
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=81.34 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=73.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC-------ccchhhHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ-------PGLRSIWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~-------~~~~~~~~~ 87 (128)
....+.+||-|++|||||++.+.....++. ...+.|+..++..+.+++ .++++-|+||. ......+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa----~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVA----HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCccc----ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH
Confidence 345688999999999999999998433332 233455555666777777 66999999992 222334556
Q ss_pred hhhccCEEEEEEECCCc---ccHHHHHHHHHHHhc
Q 033075 88 YYEEAHAVVFVIDAACP---SRFEDSKTALGKFFG 119 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~---~s~~~~~~~l~~~~~ 119 (128)
+++.|+.++||+|++.. +-++.++..+.|+-.
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ 305 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELEL 305 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 77899999999999998 777777766666543
No 236
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.21 E-value=1e-10 Score=78.82 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=61.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-----------CCC--CCcCCcceEEEEEEECCeEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PPD--RIVPTVGLNIGRIEVSNSKLV 71 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~-----------~~~--~~~~t~~~~~~~~~~~~~~~~ 71 (128)
+|+++|..++|||||+.+|+....-+. +. ... +...|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 479999999999999999975221100 00 000 111233333456677889999
Q ss_pred EEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
+||+||...+.......++.+|++++|+|+++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999988877666777889999999999984
No 237
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.21 E-value=2.7e-10 Score=85.45 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=63.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CCCC---------CC---CCcCCcce----EEEEEEECCeEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLP---------PD---RIVPTVGL----NIGRIEVSNSKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~~~---------~~---~~~~t~~~----~~~~~~~~~~~~~~~D~~ 76 (128)
.+..+++++|.+++|||||+++++....-+ .+.. .. ......|. ....+.+.+..+.+||+|
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999987521111 0000 00 01111222 234566778999999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
|+..|......+++.+|++++|+|+++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 9998887777788999999999999874
No 238
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-10 Score=80.18 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=59.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc------cchh-----
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP------GLRS----- 83 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~----- 83 (128)
++.++++++|+|++|||||.|.+.+ .+.. -.......|.--....++-+..++.++|+||.- .+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig--~kv~-~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIG--QKVS-AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhC--Cccc-cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 5788999999999999999999998 2221 111222233333345666677999999999922 1111
Q ss_pred -hHHHhhhccCEEEEEEECCCcc
Q 033075 84 -IWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 84 -~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.....+..+|+++.|+|+++..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr 169 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATR 169 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCc
Confidence 1123457899999999999644
No 239
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.4e-10 Score=83.43 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-----h----hhH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-----R----SIW 85 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----~----~~~ 85 (128)
+..++|+++|.||+|||||+|.+.+ .+.. -..+..-.|.+.-...++++|.++.+.||.|..+- . ..-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~--~drs-IVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSR--EDRS-IVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhc--CCce-EeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 4568999999999999999999998 3321 11112223344434677899999999999996651 0 122
Q ss_pred HHhhhccCEEEEEEEC--CCcccHHHHHHHHHHH
Q 033075 86 EKYYEEAHAVVFVIDA--ACPSRFEDSKTALGKF 117 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~--~~~~s~~~~~~~l~~~ 117 (128)
...++.+|++++|+|. ++-++-..+.+.+...
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 3446789999999999 5555555555555443
No 240
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.19 E-value=3.5e-10 Score=87.45 Aligned_cols=94 Identities=18% Similarity=0.083 Sum_probs=68.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC------------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+|+++|..++|||||+++++....... +...+ ....|+......+.+++.++.+|||||..+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3456999999999999999999975222110 00000 111233334567778889999999999998
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
+......+++.+|++++|+|+.+....+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~ 115 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQ 115 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChh
Confidence 8888888899999999999999865544
No 241
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.19 E-value=1.7e-10 Score=80.04 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCe-----------------EEEEEeCCCCcc--
Q 033075 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-----------------KLVFWDLGGQPG-- 80 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~-- 80 (128)
++++|.|+||||||++++...... ..+....|+..+...+.+.+. ++.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~----~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE----AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc----cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 579999999999999999982221 112344555666556555542 599999999331
Q ss_pred -----chhhHHHhhhccCEEEEEEECCC
Q 033075 81 -----LRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 81 -----~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
........++.+|++++|+|+.+
T Consensus 77 ~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 77 SKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred chhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 12233344678999999999753
No 242
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.18 E-value=6.4e-10 Score=77.82 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=69.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC--ccchhhH------H
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--PGLRSIW------E 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~~------~ 86 (128)
.....+++-|.||||||||++.+.+...++ .+..+.|.+++++.++.++.++++.||||. +....+. .
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEv----A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEV----APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCcc----CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 355678999999999999999999833333 345667889999999999999999999992 2222111 1
Q ss_pred Hhh-hccCEEEEEEECCCc--ccHHHHHHHHHHHh
Q 033075 87 KYY-EEAHAVVFVIDAACP--SRFEDSKTALGKFF 118 (128)
Q Consensus 87 ~~~-~~~~~~v~v~d~~~~--~s~~~~~~~l~~~~ 118 (128)
..+ .-.++++|++|.+.. -+.+.=...++++.
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk 276 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIK 276 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHH
Confidence 112 346788999998853 34444334444443
No 243
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.17 E-value=1.5e-10 Score=84.51 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceE-------------------EEEE-EE------
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLN-------------------IGRI-EV------ 65 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~-------------------~~~~-~~------ 65 (128)
++++++|+++|..++|||||++++.....+ ..+.+. .-|+... .... +.
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d---~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTD---THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETE 77 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecc---cCHhHHHcCceeEecccccccccccccCccccccccccccccccccc
Confidence 367899999999999999999999652111 000000 0011100 0000 00
Q ss_pred CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.+..+.+||+||+++|...+......+|++++|+|+++.
T Consensus 78 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 78 LLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP 116 (406)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 136799999999999988777777889999999999863
No 244
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.17 E-value=3.3e-10 Score=78.86 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=40.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC------CCCCcCCcceEE--EEEEECC--eEEEEEeCCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP------PDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQ 78 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~------~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~ 78 (128)
-.++|+++|.+|+|||||++++.. ....... .....+|..... ..+..++ .++.+|||||-
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~--~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFN--TKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHc--CCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 468999999999999999999987 2211100 011334444433 2334455 67999999993
No 245
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=3.8e-10 Score=80.82 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG 80 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~ 80 (128)
++++++|.|++|||||++++....... .+....|+..+...+.+.+ .++.+.|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v----~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA----ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee----cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 689999999999999999999822111 1223445555555555444 2589999999432
Q ss_pred -------chhhHHHhhhccCEEEEEEECCC
Q 033075 81 -------LRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 81 -------~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
........++.+|++++|+|+..
T Consensus 79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 79 GASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 11233345689999999999863
No 246
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.13 E-value=6.8e-10 Score=84.42 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=53.4
Q ss_pred cCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchhh------HHHhh--hccC
Q 033075 24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAH 93 (128)
Q Consensus 24 G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~ 93 (128)
|++|+|||||+|++.+ ....-...+ |.......+++++.++.+||+||..++... ...++ +.+|
T Consensus 1 G~pNvGKSSL~N~Ltg------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhC------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence 8999999999999987 222112222 333334566777888999999998776432 33343 3789
Q ss_pred EEEEEEECCCcc
Q 033075 94 AVVFVIDAACPS 105 (128)
Q Consensus 94 ~~v~v~d~~~~~ 105 (128)
++++|+|.++.+
T Consensus 75 vvI~VvDat~le 86 (591)
T TIGR00437 75 LVVNVVDASNLE 86 (591)
T ss_pred EEEEEecCCcch
Confidence 999999998754
No 247
>COG2262 HflX GTPases [General function prediction only]
Probab=99.13 E-value=6.7e-10 Score=79.69 Aligned_cols=91 Identities=27% Similarity=0.376 Sum_probs=69.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC---------ccchhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSI 84 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~---------~~~~~~ 84 (128)
.....|.++|-.++|||||+|++.. .. ....++.+.|.+.....+.+.+ ..+.+.||.|- +.|+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~--~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTG--AD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhc--cC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 3567899999999999999999986 22 2334577888888888888885 89999999991 223332
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
.. ....+|+++.|+|+++++..+++
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKL 290 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHH
Confidence 22 23689999999999999655555
No 248
>PRK12735 elongation factor Tu; Reviewed
Probab=99.11 E-value=1.1e-09 Score=79.75 Aligned_cols=91 Identities=22% Similarity=0.203 Sum_probs=61.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CC---------CCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GL---------PPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~---------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++++++|..++|||||+++|+....+.. .. ...+ .--|+......++.++.++.++|+||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 36789999999999999999999986211110 00 0001 111222222233345578999999999887
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.......+..+|++++|+|+.+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCC
Confidence 66555667789999999998874
No 249
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.11 E-value=9.6e-10 Score=80.05 Aligned_cols=91 Identities=19% Similarity=0.167 Sum_probs=60.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-C---------CCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-E---------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~---------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++|+++|..++|||||+++|+....+. . +..+.+ .-.|+......++.++.++.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997421110 0 000001 112222222333334578999999999988
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
..........+|++++|+|+.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555556788999999998873
No 250
>PRK12739 elongation factor G; Reviewed
Probab=99.09 E-value=2.1e-09 Score=83.21 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=68.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+|+++|..++|||||+++|+....... +... .+..-|+......+.+++.++.++||||..+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567899999999999999999986322110 0000 0112344444567778889999999999988
Q ss_pred chhhHHHhhhccCEEEEEEECCCccc
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+...+...++.+|++++|+|+.+.-.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~ 111 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 88888888999999999999987643
No 251
>PRK12736 elongation factor Tu; Reviewed
Probab=99.09 E-value=1.5e-09 Score=78.99 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCC---------CCC--CCcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGL---------PPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~---------~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++|+++|..++|||||+.+|+....+. ... ... +...|+......+..++.++.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4678999999999999999999998622110 000 000 1111222222233334578999999999887
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
..........+|++++|+|+.+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555666789999999998863
No 252
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.08 E-value=1e-09 Score=85.16 Aligned_cols=89 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC----C-----CCCC---CCcCCcceEEE----EEEECCeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----G-----LPPD---RIVPTVGLNIG----RIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----~-----~~~~---~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~ 79 (128)
...+|+++|..++|||||+++++.....+. + .+.. +...|+..... ..+..+..+.+|||||..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 457999999999999999999986311110 0 0000 01123332211 133456899999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
+|.......++.+|++++|+|+.+.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCC
Confidence 9888888889999999999998874
No 253
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.08 E-value=5.9e-10 Score=81.52 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=57.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEE---------------------C---
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV---------------------S--- 66 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~---------------------~--- 66 (128)
.+++.++++++|..++|||||+.+|.....+ ..+.+ ...|+........+ +
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d---~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTD---RHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecc---cCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 3578999999999999999999999652111 11111 01111111100000 0
Q ss_pred --CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 67 --NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 67 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
...+.+||+||+++|..........+|++++|+|++++
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP 121 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 25799999999988766545555677999999999964
No 254
>CHL00071 tufA elongation factor Tu
Probab=99.06 E-value=3.7e-09 Score=77.37 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=62.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------CCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++++++|..++|||||+++|+....... +....+ ...|+......++.++.++.+.|+||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 46789999999999999999999987311100 000011 111122212234445688999999998887
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.......+..+|++++|+|+...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCC
Confidence 66666677899999999998864
No 255
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.06 E-value=1.5e-09 Score=80.73 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=63.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCC-------------C--CCcCCcceEEEEEE
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------------D--RIVPTVGLNIGRIE 64 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~-------------~--~~~~t~~~~~~~~~ 64 (128)
.+..++++++|..++|||||+.+|+.....+. +... . +...|+......++
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999986322110 1100 0 00112333334455
Q ss_pred ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.++.++.++|+||++.|.......+..+|++++|+|+.+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 6678999999999988865555557999999999998764
No 256
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=78.62 Aligned_cols=88 Identities=23% Similarity=0.171 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc----------chh-hH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRS-IW 85 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~ 85 (128)
.+|++++|-|++|||||+|+++. .+- .-..+..-.|.+.-...+++++..+.+.||.|-++ |.- ..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilg--eeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILG--EER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhcc--Cce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 59999999999999999999997 210 00111222344444567888899999999999332 222 22
Q ss_pred HHhhhccCEEEEEEECCCcccH
Q 033075 86 EKYYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~~s~ 107 (128)
...+..+|++++|+|.+.+-+-
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchH
Confidence 3556889999999999986543
No 257
>PLN03126 Elongation factor Tu; Provisional
Probab=99.05 E-value=2.7e-09 Score=79.31 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=63.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--------CCcCCcce----EEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--------RIVPTVGL----NIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~--------~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++++++|..++|||||+++|+.....+.+...+ ......|. ....++.++.++.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3578999999999999999999998622111011100 00111222 22334456689999999999988
Q ss_pred hhhHHHhhhccCEEEEEEECCCcc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
-......+..+|++++|+|+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~ 181 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGP 181 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC
Confidence 766666678899999999988653
No 258
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.05 E-value=2.1e-09 Score=82.44 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=64.5
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCC--------------CCCCCCC---------------CcCCcceEEEE
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV--------------EGLPPDR---------------IVPTVGLNIGR 62 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--------------~~~~~~~---------------~~~t~~~~~~~ 62 (128)
...++.++|+++|.+++|||||+++|+....-+ .+...+. ...|+......
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 345678999999999999999999998732211 0110000 01123333445
Q ss_pred EEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 63 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
++.++.++.++|+||++.|.......+..+|++++|+|+...
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 556678899999999988765555567899999999998754
No 259
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.04 E-value=1.8e-09 Score=67.93 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC----ccchhhHHHhhhccC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----PGLRSIWEKYYEEAH 93 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~~ 93 (128)
-|++++|+.++|||||+++|.. ... .+..|. .+.+.+ .+.|+||. ..+..-......+||
T Consensus 2 krimliG~~g~GKTTL~q~L~~------~~~--~~~KTq-----~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG------EEI--RYKKTQ-----AIEYYD---NTIDTPGEYIENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC------CCC--CcCccc-----eeEecc---cEEECChhheeCHHHHHHHHHHHhhCC
Confidence 3899999999999999999987 211 222222 222322 34899983 223333333446899
Q ss_pred EEEEEEECCCcc
Q 033075 94 AVVFVIDAACPS 105 (128)
Q Consensus 94 ~~v~v~d~~~~~ 105 (128)
.++++.|.+++.
T Consensus 66 ~V~ll~dat~~~ 77 (143)
T PF10662_consen 66 VVLLLQDATEPR 77 (143)
T ss_pred EEEEEecCCCCC
Confidence 999999998865
No 260
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.03 E-value=4.3e-09 Score=79.67 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=61.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc------hhhHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY 89 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~ 89 (128)
++.+++++|+||+|||||.|+++...... +.. .-.|++--......++.++++.|+||.-.+ +.....|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V-gNw---pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKV-GNW---PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCcee-cCC---CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 45679999999999999999999822222 111 112333334566777888999999995433 22334444
Q ss_pred --hccCEEEEEEECCCcccHHHH
Q 033075 90 --EEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 90 --~~~~~~v~v~d~~~~~s~~~~ 110 (128)
...|+++-|+|.++.++--.+
T Consensus 78 l~~~~D~ivnVvDAtnLeRnLyl 100 (653)
T COG0370 78 LEGKPDLIVNVVDATNLERNLYL 100 (653)
T ss_pred hcCCCCEEEEEcccchHHHHHHH
Confidence 367999999999997654333
No 261
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.03 E-value=3.4e-09 Score=80.92 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
-|+++|..++|||||++++... +. +.++.+. ..|+...+..+.. ++..+.+||+||+++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~--~~-dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV--NA-DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CC-ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 4789999999999999999852 11 2222222 2343333333433 357789999999998866656667899999
Q ss_pred EEEEECCC
Q 033075 96 VFVIDAAC 103 (128)
Q Consensus 96 v~v~d~~~ 103 (128)
++|+|+++
T Consensus 79 lLVVda~e 86 (614)
T PRK10512 79 LLVVACDD 86 (614)
T ss_pred EEEEECCC
Confidence 99999887
No 262
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=3.3e-09 Score=77.53 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-------------CC--CCcCCcceEEEEEEECCe
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------------PD--RIVPTVGLNIGRIEVSNS 68 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-------------~~--~~~~t~~~~~~~~~~~~~ 68 (128)
++++++|..++|||||+.+++.....+. +.. ++ +...|+......++.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999976322110 100 00 011123333455556678
Q ss_pred EEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
++.++|+||+++|.......+..+|++++|+|+...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 999999999998866556677899999999998764
No 263
>PRK00049 elongation factor Tu; Reviewed
Probab=99.02 E-value=3.4e-09 Score=77.22 Aligned_cols=91 Identities=20% Similarity=0.162 Sum_probs=62.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CC---------CCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GL---------PPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-~~---------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++++++|..++|||||+.+|+....+.. .. .+.+ ...|+......+..++.++.+.|+||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 46789999999999999999999987321110 00 0001 111222222333345678999999999887
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.......+..+|++++|+|+.+.
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCC
Confidence 66666667899999999998864
No 264
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.5e-09 Score=75.45 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=62.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------------------eEEEEEeCCC-
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------------------SKLVFWDLGG- 77 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~~~D~~g- 77 (128)
.+++.++|.|++|||||.+.++. .. .+..+..+.|+..+...+.+.+ ..++++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~--~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGL 77 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTK--AG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGL 77 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHc--CC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEeccc
Confidence 47899999999999999999998 22 2223455667777655544432 3588999998
Q ss_pred ------CccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 78 ------QPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 78 ------~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.+.....+...+|.+|+++.|+|++..+
T Consensus 78 V~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~ 111 (372)
T COG0012 78 VKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDT 111 (372)
T ss_pred CCCcccCCCcchHHHHhhhhcCeEEEEEEecCCC
Confidence 3345556677789999999999998543
No 265
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=1.3e-08 Score=77.54 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch-------h---hHH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------S---IWE 86 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~---~~~ 86 (128)
.++|+++|.+|+||||++|.++. .+... .......|...........+..+.++||||-.... . ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILG--ekvf~-vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFG--EVKFS-TDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--ccccc-ccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 46899999999999999999997 22111 01111233333333344577899999999965421 1 122
Q ss_pred Hhhh--ccCEEEEEEECCCcccH-H--HHHHHHHHHhcC
Q 033075 87 KYYE--EAHAVVFVIDAACPSRF-E--DSKTALGKFFGM 120 (128)
Q Consensus 87 ~~~~--~~~~~v~v~d~~~~~s~-~--~~~~~l~~~~~~ 120 (128)
.++. .+|++++|..++..... + .+-..+.+++..
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~ 233 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP 233 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH
Confidence 3434 47999999887643332 2 233445444443
No 266
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.98 E-value=4.1e-09 Score=77.85 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=65.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------------CCC---------CCC--CcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------------GLP---------PDR--IVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----------------~~~---------~~~--~~~t~~~~~~~~~~~ 66 (128)
.++.++++++|..++|||||+.+|+....... +.+ +.+ ...|+......++.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999986322110 000 000 111233333455666
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
+..+.+.|+||+.+|.......+..+|++++|+|++..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 78999999999999877777778999999999998864
No 267
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.97 E-value=1e-08 Score=69.46 Aligned_cols=87 Identities=24% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh-ccCCCC----------------CCCCCCcCCcceE-----------------EEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV-YSNVEG----------------LPPDRIVPTVGLN-----------------IGRIE 64 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~-~~~~~~----------------~~~~~~~~t~~~~-----------------~~~~~ 64 (128)
|++++|+.++|||||+.++... ..+..+ ..........|++ ...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999861 111000 0000000011111 12334
Q ss_pred ECCeEEEEEeCCCCccchhhHHHhhh--ccCEEEEEEECCCcc
Q 033075 65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPS 105 (128)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~v~v~d~~~~~ 105 (128)
..+..+.+.|+||+++|.......+. .+|++++|+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~ 123 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI 123 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC
Confidence 45678999999999988665444443 689999999987643
No 268
>PLN03127 Elongation factor Tu; Provisional
Probab=98.97 E-value=1.5e-08 Score=74.85 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=61.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCC----------CCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~----------~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++|+++|..++|||||+++|.....+. -+..+.+ ...|+......++.++.++.+.|+||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 4678999999999999999999997421110 0000111 112333333444445688999999999887
Q ss_pred hhhHHHhhhccCEEEEEEECCCc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
-.........+|++++|+|+.+.
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555556789999999998764
No 269
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.97 E-value=5.5e-09 Score=75.12 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=45.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEEEEEECC-eEEEEEeCCCCccchhhHHHh---
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKY--- 88 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~--- 88 (128)
.+..++|+++|.+|+|||||+|.+.+..++-++..+. ....|... ..+.... -++.+||+||..........|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 3578899999999999999999997632321121111 11122221 2222233 569999999965443333344
Q ss_pred --hhccCEEEEEEE
Q 033075 89 --YEEAHAVVFVID 100 (128)
Q Consensus 89 --~~~~~~~v~v~d 100 (128)
+...|.++++.+
T Consensus 110 ~~~~~yD~fiii~s 123 (376)
T PF05049_consen 110 VKFYRYDFFIIISS 123 (376)
T ss_dssp TTGGG-SEEEEEES
T ss_pred ccccccCEEEEEeC
Confidence 456788777665
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.97 E-value=8.7e-09 Score=72.62 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCc-------cchhhHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP-------GLRSIWEKYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~-------~~~~~~~~~~ 89 (128)
.-|.+||.|++|||||++.+.....++. +..+.|+-.+...+... +..+.+-|+||.- .....+..++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIa----dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI 235 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIA----DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI 235 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCccc----CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH
Confidence 3578999999999999999998555553 23334444444455543 4679999999822 2233456777
Q ss_pred hccCEEEEEEECCCccc---HHHHHHHHHHHh
Q 033075 90 EEAHAVVFVIDAACPSR---FEDSKTALGKFF 118 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s---~~~~~~~l~~~~ 118 (128)
+.|.+++.|+|++..+. .+..+....++.
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~ 267 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELE 267 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHH
Confidence 89999999999996553 444444444443
No 271
>PRK00007 elongation factor G; Reviewed
Probab=98.96 E-value=1.5e-08 Score=78.62 Aligned_cols=92 Identities=17% Similarity=0.052 Sum_probs=65.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+|+++|..++|||||+++|+....... +... .+...|+......+.+.+..+.+.||||...
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3466999999999999999999985222110 0000 0111233333456777889999999999988
Q ss_pred chhhHHHhhhccCEEEEEEECCCccc
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+.......++.+|++++|+|+...-.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~ 113 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVE 113 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcc
Confidence 77666777899999999999876543
No 272
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.94 E-value=8e-09 Score=73.51 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=59.8
Q ss_pred CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc----------cHHHHHHHHHHHhcCcccc
Q 033075 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS----------RFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------s~~~~~~~l~~~~~~~~~~ 124 (128)
|.|+....+++++..+.++|++|++.-+.-|..++.++++++||+++++=+ .+.+.....+.+++++...
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 778877888889999999999999999999999999999999999988532 3456666788888877665
Q ss_pred cC
Q 033075 125 ER 126 (128)
Q Consensus 125 ~~ 126 (128)
+-
T Consensus 262 ~t 263 (354)
T KOG0082|consen 262 NT 263 (354)
T ss_pred cC
Confidence 53
No 273
>PRK12740 elongation factor G; Reviewed
Probab=98.94 E-value=1.3e-08 Score=78.61 Aligned_cols=88 Identities=20% Similarity=0.150 Sum_probs=64.3
Q ss_pred EcCCCCCHHHHHHHHHhhccCCC--CC------CCC------CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHh
Q 033075 23 LGIDKAGKTTLLEKLKSVYSNVE--GL------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 23 ~G~~~~GKTsl~~~l~~~~~~~~--~~------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 88 (128)
+|..++|||||+++|+....... +. ..+ +...|++.....+.+.+..+.+||+||...+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 58999999999999976322110 00 000 11234444556777888999999999999887778888
Q ss_pred hhccCEEEEEEECCCcccHHHH
Q 033075 89 YEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
++.+|++++|+|.++.......
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~ 102 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE 102 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH
Confidence 9999999999999987665544
No 274
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.93 E-value=7.2e-09 Score=76.58 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCCC--CcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPDR--IVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~~--~~~t~~~~~~~~~~~ 66 (128)
.++.++++++|..++|||||+-+|+....... +..+.+ ..-|+......++.+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 36789999999999999999999876322110 000001 111222323344555
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
+..+.+.|+||+++|.......+..+|++++|+|+++
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 6899999999999998887888899999999999987
No 275
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.93 E-value=1.8e-08 Score=72.40 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCcc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG 80 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~ 80 (128)
+++.++|.|++|||||++.+..... +......+.|+..+...+.+.+ ..+.+.|+||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~---~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG---NEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc---cccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 7899999999999999999998222 0111223445666666666554 3689999998332
Q ss_pred -------chhhHHHhhhccCEEEEEEECCC
Q 033075 81 -------LRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 81 -------~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
........++.+|+++.|+++.+
T Consensus 80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 80 GASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred chhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 33355567799999999999864
No 276
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.92 E-value=3.1e-08 Score=65.27 Aligned_cols=98 Identities=26% Similarity=0.327 Sum_probs=59.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCC----------Cc
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG----------QP 79 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~ 79 (128)
+......-|+++|.++||||||+|.+++ .+.-.....|.|.+ ..-+++++ .+.+.|.|| .+
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~------~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTN------QKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhC------CcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHH
Confidence 3344677899999999999999999998 22112222333322 12223332 388999999 33
Q ss_pred cchhhHHHhhh---ccCEEEEEEECCCcccH--HHHHHHHHH
Q 033075 80 GLRSIWEKYYE---EAHAVVFVIDAACPSRF--EDSKTALGK 116 (128)
Q Consensus 80 ~~~~~~~~~~~---~~~~~v~v~d~~~~~s~--~~~~~~l~~ 116 (128)
.+..+...|++ +..+++.++|+..+-.- .+.-+|+.+
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~ 133 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE 133 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34455566665 35677888898765433 233445544
No 277
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.92 E-value=5.1e-09 Score=63.84 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+|++++|+.|+|||+|+.++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~ 22 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQ 22 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhc
Confidence 5899999999999999999977
No 278
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-08 Score=69.38 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=69.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (128)
....+++++|-|.+|||||+..+...+++. ....+.|...-...+.+++..+++.|.||.-+ -++. .
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~Sea----A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQv-i 134 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEA----ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQV-I 134 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhh----hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceE-E
Confidence 356799999999999999999998743332 22334455455678889999999999998221 1222 2
Q ss_pred HhhhccCEEEEEEECCCcccHH-HHHHHHHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFE-DSKTALGKF 117 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~-~~~~~l~~~ 117 (128)
...+.+|++++|.|.+..+.-. -+...++.+
T Consensus 135 avArtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred EEeecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 3347899999999999865443 445566655
No 279
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=2.1e-08 Score=70.69 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=63.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC-
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG- 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g- 77 (128)
.++++.+||.|++||||++|.+.. ... ..-...+.|++.+...+.+.+ ..++++|++|
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~--~~a--~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTK--SKA--GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhc--CCC--CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 578999999999999999999998 222 122344567777766665543 3589999998
Q ss_pred ------CccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 78 ------QPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 78 ------~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.+....-+...++.+|+++-|+++....
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~ 128 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDT 128 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecCcc
Confidence 2334445566779999999999887544
No 280
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=5.7e-08 Score=62.51 Aligned_cols=48 Identities=27% Similarity=0.277 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCc----cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075 68 SKLVFWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 68 ~~~~~~D~~g~~----~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
..+.++|+||-. ....++..++..+|++++|.+.++.-+-.....+.+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~ 152 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ 152 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH
Confidence 358899999943 233677888899999999999988554444433333
No 281
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=3.7e-09 Score=70.97 Aligned_cols=102 Identities=18% Similarity=0.344 Sum_probs=69.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCccchh-----hHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYY 89 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~-----~~~~~~ 89 (128)
..-|++++|.+|+||||+-..+...+. ........+|+++....+.+-| .-+.+||++|++.+-. .....+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIF 79 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhh
Confidence 356899999999999999777664111 1111244567777777776655 8899999999985422 334567
Q ss_pred hccCEEEEEEECCCccc---HHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAACPSR---FEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s---~~~~~~~l~~~~~~ 120 (128)
++.+++++|||++..+- +..-+.-++.+++.
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~ 113 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN 113 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence 89999999999998642 33334444444443
No 282
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.1e-08 Score=73.61 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=63.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCC-----------C--CCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-----------D--RIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~-----------~--~~~~t~~~~~~~~~~~ 66 (128)
.+++++++++|...+|||||+-+|+.....+. ++.. . +...|+......++-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46899999999999999999999977422210 1100 0 0011233333444455
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.+.+++.|+||++.|-.-...-..++|+.|+|+|+.+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 588999999998888665555568899999999998864
No 283
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.78 E-value=1.7e-07 Score=63.49 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=54.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.+...|+++|.+++|||||++.+...... .......|. +......+.++.++|+||.- ..+. ...+.+|+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDv 106 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADL 106 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhccc------Ccccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCE
Confidence 34567999999999999999999872111 111111221 11223356889999999853 3333 34588999
Q ss_pred EEEEEECCCccc
Q 033075 95 VVFVIDAACPSR 106 (128)
Q Consensus 95 ~v~v~d~~~~~s 106 (128)
+++++|.+....
T Consensus 107 VllviDa~~~~~ 118 (225)
T cd01882 107 VLLLIDASFGFE 118 (225)
T ss_pred EEEEEecCcCCC
Confidence 999999886443
No 284
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.77 E-value=3.6e-08 Score=62.08 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~ 78 (128)
+++++|.+|+|||||+|++.. ...... ..+..+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG------KKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC------CCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999987 222111 1111112223444433 6899999995
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.76 E-value=1.2e-07 Score=74.01 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=61.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-----C-------cCCcceEEEEEEE----CCeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-----I-------VPTVGLNIGRIEV----SNSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-----~-------~~t~~~~~~~~~~----~~~~~~~~D~~g~~ 79 (128)
+.-+|+++|..++|||||+.+++....-+.....+. + .-|+......+.+ .+..+.++|+||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 445799999999999999999986322111000000 0 0111111222222 35789999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCccc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+|.......++.+|++++|+|+...-.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~ 125 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVM 125 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCC
Confidence 998888888999999999999887533
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.72 E-value=8.3e-08 Score=75.88 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=62.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC----------C--CcCCcceEEEEEEE----------------C
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----------R--IVPTVGLNIGRIEV----------------S 66 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~----------~--~~~t~~~~~~~~~~----------------~ 66 (128)
.+..+|+++|..++|||||+.+++....-+...... + ...|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 356699999999999999999998732211000000 0 00111111122333 2
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+..+.++|+||+.+|.......++.+|++++|+|+...-.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~ 136 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc
Confidence 4778999999999998888888899999999999887544
No 287
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.71 E-value=3.5e-07 Score=63.95 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=35.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CC---CCCcCCcceEEEE--EEECC--eEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PP---DRIVPTVGLNIGR--IEVSN--SKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~---~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g 77 (128)
-.++|+++|.+|+|||||++.|+......... .. .....+....... +.-++ .+++++||||
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 36899999999999999999999821111110 00 0111222232222 22233 6799999999
No 288
>PTZ00416 elongation factor 2; Provisional
Probab=98.70 E-value=1.3e-07 Score=74.74 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=61.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC----CCC------CCC--CcCCcceEEEEEEEC----------CeEEEEE
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLP------PDR--IVPTVGLNIGRIEVS----------NSKLVFW 73 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~----~~~------~~~--~~~t~~~~~~~~~~~----------~~~~~~~ 73 (128)
+..+|+++|..++|||||+.+|+....-+. +.. +.+ ...|+......+.+. +..+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 455999999999999999999987322110 000 000 001111111223333 4679999
Q ss_pred eCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 74 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
|+||..+|.......++.+|++++|+|+.+.-.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~ 130 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC 130 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence 999999988877888899999999999887533
No 289
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.2e-07 Score=60.72 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..+++++|.+|+|||||+|++..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 567899999999999999999987
No 290
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.64 E-value=3.9e-07 Score=67.66 Aligned_cols=94 Identities=27% Similarity=0.398 Sum_probs=66.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------eEEEEEeCCCCccchhhHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~~~~~~ 88 (128)
...-.|+++|..++|||||+.+|.. .+ ...++.+..+....+.+ .++.+|-+.|...+..+.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~------~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~ 93 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQG------IE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFA 93 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhc------cC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhccc
Confidence 3567999999999999999999865 22 23345555544444433 578999999987787777665
Q ss_pred hhc----cCEEEEEEECCCcccH-HHHHHHHHHH
Q 033075 89 YEE----AHAVVFVIDAACPSRF-EDSKTALGKF 117 (128)
Q Consensus 89 ~~~----~~~~v~v~d~~~~~s~-~~~~~~l~~~ 117 (128)
+.. --.+|+|+|.+.|-.+ +.+..|+.-+
T Consensus 94 lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 94 LTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred CCcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 543 2477899999998654 4666666544
No 291
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.62 E-value=1.3e-07 Score=61.61 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=35.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g 77 (128)
..++++++|.+++|||||+|++... +. . ...+..|... ..+.+ +.++.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~--~~----~-~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS--RA----C-NVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc--cc----c-eecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 3489999999999999999999971 11 0 1112222221 12222 34688999998
No 292
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.58 E-value=2.7e-07 Score=59.89 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=35.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 78 (128)
..++++++|.+++|||||++++.. ..... ....|... ..+.++ ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~------~~~~~~~~~~~~T~~~--~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRG------KKVAKVGNKPGVTKGI--QWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC------CCceeecCCCCEEeee--EEEEec-CCEEEEECCCC
Confidence 457999999999999999999997 22211 11122222 223332 56889999984
No 293
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.57 E-value=3.3e-07 Score=58.45 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=37.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECCeEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g 77 (128)
...+++++|.+++||||+++++.. .. ...+.++.|.+.. .+...+..+.+||+||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG------RH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------CC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999986 21 2233444454321 1111234789999998
No 294
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.56 E-value=5.8e-07 Score=63.48 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=69.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC------eEEEEEeCCCCccchhhHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
..-.|+++|+.++|||||+.++.. .+ ...+-.|..+..+.+.+ .++.+|-+.|+.....+.+..+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg------~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQG------SE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhc------cc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 456899999999999999999886 21 33444555555554443 5788899999888777777666
Q ss_pred hcc----CEEEEEEECCCc-ccHHHHHHHHHHHhcC
Q 033075 90 EEA----HAVVFVIDAACP-SRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~----~~~v~v~d~~~~-~s~~~~~~~l~~~~~~ 120 (128)
... ..+|++.|++++ .-++.++.|..-+.++
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 433 467888899999 6667888887766544
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.55 E-value=6.9e-07 Score=66.91 Aligned_cols=97 Identities=21% Similarity=0.359 Sum_probs=66.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce--EEEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
.++.++|.++|+.++|||.+++.+++ ....+.+..+... .+..+...+ .-+.+-|++.. ....+....
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflg------r~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke- 493 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLG------RSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE- 493 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhc------cccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-
Confidence 46789999999999999999999998 3333333233222 233444445 45677777754 333333333
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
..||+++++||.+++.+|+.....++...
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~ 522 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYF 522 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhh
Confidence 78999999999999999998877665543
No 296
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.54 E-value=1.8e-06 Score=58.53 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccch------hhH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLR------SIW 85 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~ 85 (128)
.+..-|.++|++++|||+|+|.+...... ..........|.|+....... .+..+.+.|++|..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~-f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCC-eEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 35567889999999999999999982101 111223345667766554444 24889999999954321 122
Q ss_pred HHhhhc--cCEEEEEEECCCcc
Q 033075 86 EKYYEE--AHAVVFVIDAACPS 105 (128)
Q Consensus 86 ~~~~~~--~~~~v~v~d~~~~~ 105 (128)
...+.. ++++|+..+.....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccH
Confidence 333344 78888877766544
No 297
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=4.8e-07 Score=63.08 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=36.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 78 (128)
+.++++++|.+|+|||||+|++... .. .........|... ..+.+. ..+.++|+||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~--~~-~~~~~~~g~T~~~--~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK--KV-AKVGNRPGVTKGQ--QWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC--Cc-cccCCCCCeecce--EEEEeC-CCEEEEECCCc
Confidence 4689999999999999999999871 11 0111111122222 223332 36899999996
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=3.9e-07 Score=60.00 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++++|.+|+|||||+|.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 299
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.49 E-value=6.5e-07 Score=62.78 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=36.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
..++++++|.+++|||||+|++... +. .........|.+. ..+.+ +..+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~--~~-~~~~~~~g~T~~~--~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK--KI-AKTGNRPGVTKAQ--QWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC--Cc-cccCCCCCeEEEE--EEEEe-CCcEEEEECCCcC
Confidence 5689999999999999999999871 11 0111111122222 22222 3468899999953
No 300
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=62.05 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=61.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCC---------ccchhhHH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSIWE 86 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~---------~~~~~~~~ 86 (128)
.--|.++|-.++|||||++.+.. .. -...+..+.|.+.......... ..+.+.||-|- ..|+...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~--Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL- 252 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTK--AA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL- 252 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHh--hh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH-
Confidence 44689999999999999999986 21 2334566777777655555544 77888999981 1222222
Q ss_pred HhhhccCEEEEEEECCCcccHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
.....+|+++-|+|++.|+--+.
T Consensus 253 eeVaeadlllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQ 275 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHH
Confidence 22367999999999999874433
No 301
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.7e-06 Score=65.92 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=72.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCCC-----C---cCCcc----eEEEEEEECC-eEEEEEeCCCCc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPDR-----I---VPTVG----LNIGRIEVSN-SKLVFWDLGGQP 79 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~~-----~---~~t~~----~~~~~~~~~~-~~~~~~D~~g~~ 79 (128)
.+.-+|.++|.-.+|||||..+++.....++ ++..+- + .-..| ....++.+.+ ..+.+.||||+-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 4566899999999999999999987433321 111100 0 01122 2234667785 999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
+|.......++-+|+++.|+|+...-..+...-|-
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r 122 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR 122 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH
Confidence 99999999999999999999999866555444443
No 302
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=5.5e-06 Score=59.40 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=38.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-----CCCCCcCCcceEEEEEEE--CC--eEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-----PPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-----~~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g 77 (128)
-.+.++++|++|.|||||+|.|+.. +..+. .......+..+......+ ++ .++++.||||
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~--~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLT--DLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhh--hccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 4699999999999999999998872 11111 111112233443333333 33 7899999999
No 303
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=7.8e-07 Score=63.34 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=36.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE-ECCeEEEEEeCCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ 78 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~ 78 (128)
++..+++++|-|++|||||+|+|..... ....+..|.+-.... .-+..+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-------~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-------AKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-------eeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 3568899999999999999999998222 122222233321111 12345899999994
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=1.4e-06 Score=55.56 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 77 (128)
....+++++|.+++||||++|.+...... ........|..... +.. +..+.+.|+||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~---~~~~~~~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL---KVGNVPGTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc---cccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence 46788999999999999999999971110 00111222333222 222 35689999998
No 305
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.38 E-value=1.1e-05 Score=57.70 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=41.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCC---CCCCC-CcCCcceEEEEEEEC--C--eEEEEEeCCC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---LPPDR-IVPTVGLNIGRIEVS--N--SKLVFWDLGG 77 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~-~~~t~~~~~~~~~~~--~--~~~~~~D~~g 77 (128)
+.-.+.|+++|++|.||||++|.++..+-.... ..... ..+++.+......+. + .++++.||||
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 356899999999999999999999984111100 01111 234444444333333 3 7899999999
No 306
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.34 E-value=1.1e-06 Score=65.60 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=71.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
-+++|+.++|..++|||+|+++++. +.+.+...+--|-....+..++ .-+.+.|.+|... .+|...+
T Consensus 28 ipelk~givg~~~sgktalvhr~lt------gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wv 96 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLT------GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV 96 (749)
T ss_pred cchhheeeeecccCCceeeeeeecc------ceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhc
Confidence 4789999999999999999999998 7776666554443333443444 5677888777332 4666889
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
|++||||.+.+..+|+.++..-.++..
T Consensus 97 davIfvf~~~d~~s~q~v~~l~~~l~~ 123 (749)
T KOG0705|consen 97 DAVVFVFSVEDEQSFQAVQALAHEMSS 123 (749)
T ss_pred cceEEEEEeccccCHHHHHHHHhhccc
Confidence 999999999999999988776555543
No 307
>PRK12288 GTPase RsgA; Reviewed
Probab=98.30 E-value=2.4e-06 Score=61.44 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
++++|.+|||||||+|+|+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred EEEECCCCCCHHHHHHHhcc
Confidence 78999999999999999987
No 308
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.28 E-value=3.3e-06 Score=58.13 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=41.5
Q ss_pred CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC
Q 033075 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
|.|+-...+.++..+++.+|++|++.-+..|.+++.+..+++||+.++.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 4555555666677889999999999999999999999999999998774
No 309
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=6e-06 Score=56.72 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|.+|+|||||+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999987
No 310
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=7.8e-06 Score=61.20 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=72.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCC------CCcCCcceEEEEEEECC---eEEEEEeCCCCccc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPD------RIVPTVGLNIGRIEVSN---SKLVFWDLGGQPGL 81 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-----~~~~------~~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~~ 81 (128)
+.-++.++..-.=|||||..+++....-+.. +.-+ +.--|+-.+..++.+.+ +-+.+.||||+-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 3446778888888999999999985442211 1111 11113333445666666 88999999999999
Q ss_pred hhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.....+.+..|+++++|+|++..-.-+....++.-+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf 174 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF 174 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH
Confidence 999899999999999999999877666655544443
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.1e-05 Score=58.94 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccC------CCCCCCCCC--------cCCcceE----EEEEEECCeEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPDRI--------VPTVGLN----IGRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~------~~~~~~~~~--------~~t~~~~----~~~~~~~~~~~~~~D~~g 77 (128)
++-..+++-.|.+|||||-..++....- ..++..... ....|+. .-.+++.+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 3446788999999999999998652110 001111111 1123332 234556779999999999
Q ss_pred CccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~ 107 (128)
+++|.....+-+..+|..|+|+|+...-.-
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~ 120 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEP 120 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccH
Confidence 999999888889999999999999875433
No 312
>PRK12289 GTPase RsgA; Reviewed
Probab=98.22 E-value=6e-06 Score=59.49 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|.+|||||||+|.|+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcC
Confidence 389999999999999999986
No 313
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.1e-05 Score=60.02 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=62.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE---CCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+..=|.++|.-.-|||||+..+.. ++.......-..--+|-. .+.. +...+++.||||++.|..++.+=..-+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~EaGGITQhIGA~--~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt 79 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEAGGITQHIGAY--QVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT 79 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhc--CccccccCCceeeEeeeE--EEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc
Confidence 344578999999999999999987 332222222222223322 3333 237899999999999999999888899
Q ss_pred CEEEEEEECCCccc
Q 033075 93 HAVVFVIDAACPSR 106 (128)
Q Consensus 93 ~~~v~v~d~~~~~s 106 (128)
|.+++|+++.|.--
T Consensus 80 DIaILVVa~dDGv~ 93 (509)
T COG0532 80 DIAILVVAADDGVM 93 (509)
T ss_pred cEEEEEEEccCCcc
Confidence 99999999998543
No 314
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.20 E-value=1.9e-06 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|||||||+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999988
No 315
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=8.1e-06 Score=61.67 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=52.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
++.+-++++|++|.|||||++.+..++++- ..++. .| .+..+.-...+++++.+| .....+..- ..-+|+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~---ti~~i---~G-PiTvvsgK~RRiTflEcp--~Dl~~miDv-aKIaDL 136 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ---TIDEI---RG-PITVVSGKTRRITFLECP--SDLHQMIDV-AKIADL 136 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHh---hhhcc---CC-ceEEeecceeEEEEEeCh--HHHHHHHhH-HHhhhe
Confidence 567888999999999999999998855541 11111 11 112222234789999988 444455433 367888
Q ss_pred EEEEEECCCc
Q 033075 95 VVFVIDAACP 104 (128)
Q Consensus 95 ~v~v~d~~~~ 104 (128)
+++++|.+-.
T Consensus 137 VlLlIdgnfG 146 (1077)
T COG5192 137 VLLLIDGNFG 146 (1077)
T ss_pred eEEEeccccC
Confidence 8888887753
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.19 E-value=5.7e-05 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++++|+.++||||+++.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g 48 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhC
Confidence 455899999999999999999986
No 317
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.18 E-value=4.1e-06 Score=57.60 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=60.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECCeEEEEEeCCCCcc--------chhhHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (128)
..-+|.++|-|.+||||++..+....++. + .++.|.-.. ...+.+.+-.+++.|.||.-+ -++. .
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~v----a-syefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv-i 131 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEV----A-AYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV-I 131 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCcc----c-cccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE-E
Confidence 34589999999999999999998732322 1 222222222 245557778999999998221 1222 2
Q ss_pred HhhhccCEEEEEEECCCcccHHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
.-.+.|+++++|.|+..|-+-..+
T Consensus 132 avartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred EEeecccEEEEEeeccCcccHHHH
Confidence 344789999999999998776655
No 318
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.18 E-value=8.1e-06 Score=60.73 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=59.8
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE---------------EEE-----------
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG---------------RIE----------- 64 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~---------------~~~----------- 64 (128)
..++..++|+++|.-..|||||++.|.....+...+.. .-.....|+... ...
T Consensus 29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (460)
T PTZ00327 29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG 108 (460)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence 45688999999999999999999999863221100000 000001111100 000
Q ss_pred -----ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 65 -----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 65 -----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.-...+.+.|+||++.|-.....-...+|++++|+|+.+.
T Consensus 109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 0013689999999998866555666899999999999874
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.14 E-value=7.9e-05 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=23.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
...+.|+++|+.++|||||+|+|..+
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhh
Confidence 36889999999999999999999884
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=3.5e-05 Score=59.15 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=64.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCc------CCcceEE----EEEEECC-----eEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIV------PTVGLNI----GRIEVSN-----SKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~------~t~~~~~----~~~~~~~-----~~~~~~D~~ 76 (128)
....+++++|.-+.|||+|+..+..+.+.-.....+ .+. ...|..+ .++-..+ +-+.+.|+|
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 356789999999999999999998743321000000 010 0122221 1222222 558899999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCcccHHH
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
|+-.|.......++.+|++++++|+.+.-.+..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt 238 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT 238 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH
Confidence 999999888889999999999999998766543
No 321
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.14 E-value=2.3e-05 Score=50.28 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=35.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~ 76 (128)
+..+||++.|+||+||||++.++.....+ .-....|+....+.-++ .-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~-------~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE-------KGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh-------cCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 35789999999999999999999862221 11223344444444444 446666766
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=1.8e-05 Score=54.00 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=37.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCC--CCcCCcceEE--EEEEECC--eEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPD--RIVPTVGLNI--GRIEVSN--SKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g 77 (128)
=.++|+++|.+|.|||||++.+...+-. ....... .+..|..... ..++-++ .++++.||||
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 4789999999999999999999772111 0011111 1112232221 2333344 5788999999
No 323
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.13 E-value=7e-06 Score=59.35 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..++.++|.+|+|||||+|+++.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999997
No 324
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.13 E-value=1.4e-05 Score=64.41 Aligned_cols=81 Identities=26% Similarity=0.320 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC----------------CeEEEEEeCCCCccchhhHHHhhhc
Q 033075 28 AGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----------------NSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 28 ~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
++||||+..+.. ++.......-..-.+|......... --.+.+|||||++.|..+....+..
T Consensus 472 ~~KTtLLD~iR~--t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~ 549 (1049)
T PRK14845 472 VHNTTLLDKIRK--TRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL 549 (1049)
T ss_pred cccccHHHHHhC--CCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence 359999999988 4332322333333344332222110 0138999999999998888888889
Q ss_pred cCEEEEEEECCC---cccHHHH
Q 033075 92 AHAVVFVIDAAC---PSRFEDS 110 (128)
Q Consensus 92 ~~~~v~v~d~~~---~~s~~~~ 110 (128)
+|++++|+|+++ +.+++.+
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I 571 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAI 571 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHH
Confidence 999999999987 4444444
No 325
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=5.2e-06 Score=56.60 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh---hHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~ 93 (128)
+.+|+++|...+||||+.+....-+...+..+. .+|....-..+.-.-.++.+||.||+-.+-. .....++.+-
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlfl---ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL---ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEe---eccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 456999999999999999988772222111111 1111111111111116899999999876522 4456789999
Q ss_pred EEEEEEECCC
Q 033075 94 AVVFVIDAAC 103 (128)
Q Consensus 94 ~~v~v~d~~~ 103 (128)
++++|+|.-+
T Consensus 104 ALifvIDaQd 113 (347)
T KOG3887|consen 104 ALIFVIDAQD 113 (347)
T ss_pred eEEEEEechH
Confidence 9999999765
No 326
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.1e-05 Score=59.04 Aligned_cols=87 Identities=25% Similarity=0.297 Sum_probs=62.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEE
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 95 (128)
+..=+-++|.-.=|||||+..|.+ +........-..--+|.-...+. .|..+++.||||+..|..++.+-..-+|.+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRk--s~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRK--SSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhh--CceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 344567899999999999999988 33211111122222332223333 569999999999999999999888899999
Q ss_pred EEEEECCCcc
Q 033075 96 VFVIDAACPS 105 (128)
Q Consensus 96 v~v~d~~~~~ 105 (128)
++|+.+.|.-
T Consensus 229 VLVVAadDGV 238 (683)
T KOG1145|consen 229 VLVVAADDGV 238 (683)
T ss_pred EEEEEccCCc
Confidence 9999887743
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.5e-05 Score=54.39 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=++++|++|||||||++.+..
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999987
No 328
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.09 E-value=4.7e-06 Score=56.99 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEeCCCCccchhhHHHhh--------hccCEEEEEEECCCccc
Q 033075 69 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSR 106 (128)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~v~v~d~~~~~s 106 (128)
.+.++|+|||-++-..+.... ...-++++++|.....+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~ 137 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD 137 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC
Confidence 689999999987644333322 23557889999875444
No 329
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=2.5e-05 Score=55.83 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=59.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCCCCc--CCcceEEEEEEEC---------CeEEEEEeCCCCccch
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPDRIV--PTVGLNIGRIEVS---------NSKLVFWDLGGQPGLR 82 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~--~t~~~~~~~~~~~---------~~~~~~~D~~g~~~~~ 82 (128)
+.++++.++|.-.+|||||.+++....+. .++..++... .|.+.-...+.+. ..++++.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 56799999999999999999999874322 1122222211 1111111222221 1578999999997665
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHH
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK 111 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~ 111 (128)
.....-..-.|..++|+|+...-+-+.+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAE 113 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAE 113 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccch
Confidence 44444445567788888988655444443
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=1.2e-05 Score=56.41 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|++|+|||||+|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999987
No 331
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.06 E-value=2.1e-05 Score=58.04 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCC------CCcCCcceE----EEEEEECCeEEEEEeCCCCccchhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~~------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
.-+|+++..-.=|||||+..++.++..... +..+ ....-.|+. ...+.+++.++.+.||||+.+|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 347888888889999999999985443110 0000 111112322 2356778899999999999999999
Q ss_pred HHHhhhccCEEEEEEECCCc
Q 033075 85 WEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~ 104 (128)
..+.+.=.|++++++|+.+.
T Consensus 85 VERvl~MVDgvlLlVDA~EG 104 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG 104 (603)
T ss_pred hhhhhhhcceEEEEEEcccC
Confidence 99999999999999999874
No 332
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=1.8e-05 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..++.++|.+|||||||+|++..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHh
Confidence 345899999999999999999986
No 333
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.02 E-value=1e-05 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-|++++|..|+|||||.+.+.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G 23 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYG 23 (148)
T ss_pred ceeEEecccccCchhHHHHhhc
Confidence 4789999999999999999987
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=3.3e-05 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...++++|.+|+|||||+|.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 335
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.88 E-value=7.7e-05 Score=54.48 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=61.4
Q ss_pred CcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc----------ccHHHHHHHHHHHhcCccc
Q 033075 55 TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKFFGMRIC 123 (128)
Q Consensus 55 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~l~~~~~~~~~ 123 (128)
|.|+....+.+ .+..+.++|++|++.-+..|..++.++++++||+++++= ..+.+....++.+++.+..
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 67887778888 889999999999999999999999999999999998742 3477888889999988776
Q ss_pred ccCC
Q 033075 124 KERH 127 (128)
Q Consensus 124 ~~~~ 127 (128)
.+.|
T Consensus 302 ~~~~ 305 (389)
T PF00503_consen 302 KNTP 305 (389)
T ss_dssp TTSE
T ss_pred ccCc
Confidence 6544
No 336
>PRK13768 GTPase; Provisional
Probab=97.88 E-value=7.2e-05 Score=51.62 Aligned_cols=39 Identities=36% Similarity=0.350 Sum_probs=26.7
Q ss_pred EEEEEeCCCCccc---hhhHHHhhh---c--cCEEEEEEECCCcccH
Q 033075 69 KLVFWDLGGQPGL---RSIWEKYYE---E--AHAVVFVIDAACPSRF 107 (128)
Q Consensus 69 ~~~~~D~~g~~~~---~~~~~~~~~---~--~~~~v~v~d~~~~~s~ 107 (128)
.+.+||+||+.+. +..+..+++ . ++++++++|.+...+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~ 144 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP 144 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH
Confidence 6899999997653 333333333 2 8899999999765443
No 337
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=2.6e-05 Score=58.63 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=59.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccC--------------CCCCCCCCCcCC---------cce--EE--EEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN--------------VEGLPPDRIVPT---------VGL--NI--GRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~--------------~~~~~~~~~~~t---------~~~--~~--~~~~~~ 66 (128)
.+..+.++++|.-.+|||||+-+++....+ ..++..-.+... .|+ .+ ..++-+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 446889999999999999999998763111 112222222221 111 12 233333
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
...+++.|.||+..|-.--..-...+|+.++|+|++..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG 291 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc
Confidence 47899999999888765444455789999999998853
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.86 E-value=0.00023 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++--.++++|++|+|||||++.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3445789999999999999999987
No 339
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.85 E-value=0.00024 Score=53.80 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=54.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc------------------------------------------
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV------------------------------------------ 53 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~------------------------------------------ 53 (128)
...+++++|+..+||||.+..+... .++....++..
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqA--RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQA--RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHh--ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3569999999999999999998762 11000000000
Q ss_pred ----------CCcceEEEEEEECC---eEEEEEeCCC-------------CccchhhHHHhhhccCEEEEEE
Q 033075 54 ----------PTVGLNIGRIEVSN---SKLVFWDLGG-------------QPGLRSIWEKYYEEAHAVVFVI 99 (128)
Q Consensus 54 ----------~t~~~~~~~~~~~~---~~~~~~D~~g-------------~~~~~~~~~~~~~~~~~~v~v~ 99 (128)
.|+......++++| .+..+.|+|| .+....+.+.|+.+.+++|+|+
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCI 456 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCI 456 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEe
Confidence 02333334455555 6788999999 2334567788999999999998
No 340
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.8e-05 Score=48.16 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 341
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.84 E-value=1.5e-05 Score=57.81 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=53.9
Q ss_pred HHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccch-
Q 033075 7 GLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLR- 82 (128)
Q Consensus 7 ~~~~~~~-~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~- 82 (128)
+.|..+- .++.+.+.++|-|++||||++|.|.. .+.. ...|-.| ....+++-. .++.++|+||.-.-.
T Consensus 296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~------KkVC-kvAPIpG-ETKVWQYItLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK------KKVC-KVAPIPG-ETKVWQYITLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred HHHHhhccCccceeeeeecCCCCchHHHHHHHhh------cccc-cccCCCC-cchHHHHHHHHhceeEecCCCccCCCC
Confidence 3344433 57899999999999999999999987 2221 1111111 122222222 679999999954322
Q ss_pred -hhHHHhhhccCEEEEEEECCCccc
Q 033075 83 -SIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 83 -~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
......+ -++|-|=.+.+++.
T Consensus 368 dset~ivL---kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 368 DSETDIVL---KGVVRVENVKNPED 389 (572)
T ss_pred CchHHHHh---hceeeeeecCCHHH
Confidence 2223332 35667777777764
No 342
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.84 E-value=5.1e-05 Score=49.33 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+++.|++|+|||||++.+.. -..|+.| .+.+.|..+.- -+.+.|+.....+...
T Consensus 31 ~iaitGPSG~GKStllk~va~-----------Lisp~~G----~l~f~Ge~vs~---~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS-----------LISPTSG----TLLFEGEDVST---LKPEAYRQQVSYCAQT 85 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh-----------ccCCCCc----eEEEcCccccc---cChHHHHHHHHHHHcC
Confidence 579999999999999999987 5556665 55566655443 3345555554444333
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00038 Score=50.38 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC---cCCcc-eEEE--------------EEE----ECC------
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVG-LNIG--------------RIE----VSN------ 67 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~---~~t~~-~~~~--------------~~~----~~~------ 67 (128)
.+-.|+++|.-..||||+++-++. ..++... .||.+ +... .++ +.+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle------~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLE------QDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHh------CCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 356799999999999999999998 3333221 12222 1100 011 110
Q ss_pred ----------------eEEEEEeCCCC-----------ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 68 ----------------SKLVFWDLGGQ-----------PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 68 ----------------~~~~~~D~~g~-----------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
..+++.|+||. -.|......|...||.|+++||...-+-=.+-++.+..+..+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 25889999992 134557788889999999999987654434444456665554
Q ss_pred c
Q 033075 121 R 121 (128)
Q Consensus 121 ~ 121 (128)
+
T Consensus 211 E 211 (532)
T KOG1954|consen 211 E 211 (532)
T ss_pred c
Confidence 3
No 344
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.81 E-value=4.2e-05 Score=51.77 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999886
No 345
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=2.1e-05 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-||+++|++|||||||.+.+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.81 E-value=2.1e-05 Score=51.57 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.||+++|+|||||||+.+.+..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999988
No 347
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.2e-05 Score=58.85 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=60.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE----------------ECCeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~ 79 (128)
+..=|+++|.-..|||-|+..+.. ++............+|.++-... ++--.+.++|+||++
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~--tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRG--TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhc--cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 345689999999999999999887 33322222222233443322211 111247899999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCC
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
.|..++.+....||.+|+|+|+..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhc
Confidence 999999999999999999999986
No 348
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.80 E-value=5.3e-05 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3578999999999999999876
No 349
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.79 E-value=3.9e-05 Score=54.87 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
++++|++||||||+++.+..
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999997
No 350
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.78 E-value=8.1e-05 Score=48.34 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
||++.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 351
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=4.9e-05 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++|.+|+|||||+|++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 678999999999999999976
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=5e-05 Score=51.72 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 76 (128)
=++.++|.+|||||||++.+.. .+.||.| .+.+.+.-..+++.+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaG-----------i~~Pt~G----~v~v~G~v~~li~lg 97 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAG-----------IYKPTSG----KVKVTGKVAPLIELG 97 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------ccCCCCc----eEEEcceEehhhhcc
Confidence 3789999999999999999998 7777777 444555333344444
No 353
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=3e-05 Score=50.39 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+|+++|++|+|||||++.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 354
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.72 E-value=7.9e-05 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999997
No 355
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=7.2e-05 Score=49.79 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|+|||||+|.+..
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 578999999999999999987
No 356
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.72 E-value=7.9e-05 Score=50.02 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 357
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.72 E-value=6e-05 Score=52.02 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|||||||++.+..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3468999999999999999987
No 358
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.71 E-value=6.4e-05 Score=54.05 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
+.++|++||||||+++.+..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999997
No 359
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.71 E-value=5e-05 Score=47.16 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEEccCCCccccceeeecc
Confidence 344789999999999999999987
No 360
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=9.3e-05 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999997
No 361
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.69 E-value=9.2e-05 Score=48.71 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 362
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.69 E-value=0.0001 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999987
No 363
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=0.00011 Score=49.05 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999987
No 364
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00011 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 365
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00012 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444789999999999999999987
No 366
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00011 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999997
No 367
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.66 E-value=0.00012 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 368
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.65 E-value=0.00013 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 369
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00017 Score=53.56 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=66.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCC------CCcCCcceEEEEEEEC--C---eEEEEEeCCCCccch
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPD------RIVPTVGLNIGRIEVS--N---SKLVFWDLGGQPGLR 82 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~-----~~~~------~~~~t~~~~~~~~~~~--~---~~~~~~D~~g~~~~~ 82 (128)
++.++..-.=|||||..|++....-... +.-+ +.--|+-.+...+.+. + +.+++.||||+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4566666778999999999874332110 0000 0011222222233332 1 789999999999998
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
-...+.+..|.+.++++|++..-.-+.+...+.-+-++
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~ 128 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 128 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC
Confidence 88888889999999999999876666665555544433
No 370
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.65 E-value=9.4e-05 Score=55.95 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++-=+++++|++|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556899999999999999999997
No 371
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.65 E-value=0.00018 Score=46.91 Aligned_cols=24 Identities=38% Similarity=0.315 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...-+.++|.+|+|||||++++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 344689999999999999999986
No 372
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.65 E-value=0.00012 Score=49.24 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999987
No 373
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00014 Score=47.38 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344678999999999999999987
No 374
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.64 E-value=0.00014 Score=48.74 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 375
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.64 E-value=8.9e-05 Score=55.27 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=55.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc--h--h---hH-
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--R--S---IW- 85 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--~--~---~~- 85 (128)
....-.++++|.|++||||+++.+...-.+ .....++|.+...+.+.++-.+.++.||||.-.. + . +.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve----vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE----VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc----cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 345668899999999999999988772222 2234445666666677677789999999993221 1 1 11
Q ss_pred -HHhhhccCEEEEEEECCC
Q 033075 86 -EKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 86 -~~~~~~~~~~v~v~d~~~ 103 (128)
....+--.+++++.|++.
T Consensus 241 ITALAHLraaVLYfmDLSe 259 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSE 259 (620)
T ss_pred HHHHHHhhhhheeeeechh
Confidence 111223356777788774
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.64 E-value=0.00013 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 377
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.64 E-value=0.00015 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999997
No 378
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.64 E-value=0.00013 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999997
No 379
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.63 E-value=0.00014 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344688999999999999999987
No 380
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=9e-05 Score=50.38 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 33689999999999999999886
No 381
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00011 Score=49.65 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|+||||+++.+..
T Consensus 31 iv~llG~NGaGKTTlLkti~G 51 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMG 51 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 382
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=5.2e-05 Score=47.36 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999984
No 383
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.63 E-value=9.5e-05 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=++++|++||||||+++.+..
T Consensus 29 f~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998876
No 384
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.63 E-value=0.00014 Score=48.82 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 33689999999999999999997
No 385
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.62 E-value=0.00012 Score=48.31 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-+.++|++|+|||||++.+..
T Consensus 30 f~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999987
No 386
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.62 E-value=0.00015 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 387
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00014 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--.++++|++|+|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 388
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.62 E-value=7.4e-05 Score=40.42 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++.|++|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 389
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00015 Score=48.85 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 390
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.62 E-value=0.00015 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 391
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=0.00015 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 392
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.61 E-value=0.00018 Score=47.71 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999987
No 393
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=0.00015 Score=48.61 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 33688999999999999999987
No 394
>PRK10908 cell division protein FtsE; Provisional
Probab=97.60 E-value=0.00017 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444689999999999999999987
No 395
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00016 Score=49.29 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 396
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00014 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 334688999999999999999997
No 397
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=0.00014 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999997
No 398
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.60 E-value=3.6e-05 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.709 Sum_probs=23.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++.+|++++|...+||||+++++.-
T Consensus 36 arrelkllllgtgesgkstfikqmri 61 (359)
T KOG0085|consen 36 ARRELKLLLLGTGESGKSTFIKQMRI 61 (359)
T ss_pred hhhhheeeeecCCCcchhhHHHHHHh
Confidence 36789999999999999999998754
No 399
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00016 Score=49.87 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 400
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=0.00015 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999987
No 401
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.58 E-value=0.00018 Score=48.92 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344688999999999999999987
No 402
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.58 E-value=0.00016 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 34689999999999999999987
No 403
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.58 E-value=0.00018 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999997
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.57 E-value=0.0002 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344788999999999999999987
No 405
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00018 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999987
No 406
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.57 E-value=0.00012 Score=57.12 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++-=+++++|++|+|||||++.+..
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556889999999999999999998
No 407
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.57 E-value=8.6e-05 Score=58.01 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=30.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 69 (128)
++-=+|+++|.+|||||||++-+.+ -+.|+.| .+.+++++
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g-----------ly~p~~G----~I~~dg~d 536 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG-----------LYKPQQG----RILLDGVD 536 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc-----------CCCCCCc----eEEECCEe
Confidence 3445799999999999999999998 5556555 45555543
No 408
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=0.00021 Score=47.58 Aligned_cols=23 Identities=43% Similarity=0.407 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 409
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.57 E-value=0.001 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.+.|.+.|++|+|||||+..+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998765
No 410
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00027 Score=50.77 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=57.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccC-----------CC------CCCCC------------CCcCCcceEEEEEE
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN-----------VE------GLPPD------------RIVPTVGLNIGRIE 64 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~-----------~~------~~~~~------------~~~~t~~~~~~~~~ 64 (128)
++..+|++-.|.-.-|||||+=+|+.-... .+ +...+ ++--|+++-+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 467889999999999999999999762110 00 00000 01113333333333
Q ss_pred ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC
Q 033075 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102 (128)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~ 102 (128)
-...++.+-|+||+++|...-..=...||+.|+++|..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR 120 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR 120 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence 33478999999999988654344447789999999864
No 411
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.56 E-value=0.00018 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 334789999999999999999997
No 412
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.56 E-value=0.00018 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999987
No 413
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00019 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 414
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=9.8e-05 Score=49.64 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=-.+++|++|+|||||++.++.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsG 49 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSG 49 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhC
Confidence 3568999999999999999997
No 415
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.00021 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444689999999999999999987
No 416
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.0002 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999997
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00016 Score=48.38 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+. .++++|++|+|||||++.+..
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhC
Confidence 35 899999999999999999987
No 418
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00017 Score=52.64 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=55.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 033075 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~ 99 (128)
+.++|.+||||||++.-+.. -+.|..| .+-++|.. .|-...++|+++....+.+-+.+=-.+
T Consensus 352 vFliG~NGsGKST~~~LLtG-----------L~~PqsG----~I~ldg~p---V~~e~ledYR~LfSavFsDyhLF~~ll 413 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTG-----------LYQPQSG----EILLDGKP---VSAEQLEDYRKLFSAVFSDYHLFDQLL 413 (546)
T ss_pred EEEECCCCCcHHHHHHHHhc-----------ccCCCCC----ceeECCcc---CCCCCHHHHHHHHHHHhhhHhhhHhhh
Confidence 57889999999999999987 5555555 44455533 233345678887777776665554444
Q ss_pred ECCCcccHHHHHHHHHHHh
Q 033075 100 DAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 100 d~~~~~s~~~~~~~l~~~~ 118 (128)
......+.+.+..|++.+.
T Consensus 414 ~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 414 GPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCccCCChHHHHHHHHHHH
Confidence 4455567888888888763
No 419
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.55 E-value=0.00019 Score=47.30 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.=.++++|++|+|||||+|-+..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 44789999999999999999987
No 420
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.55 E-value=0.00019 Score=50.67 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 334678999999999999999997
No 421
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.55 E-value=0.00019 Score=48.54 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+-=.++++|++|+|||||++.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455789999999999999999987
No 422
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00019 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34689999999999999999987
No 423
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.54 E-value=0.00024 Score=46.45 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444789999999999999999987
No 424
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=0.00017 Score=50.84 Aligned_cols=21 Identities=48% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 33 i~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999998
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.54 E-value=0.0012 Score=41.58 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34678999999999999999987
No 426
>PRK06217 hypothetical protein; Validated
Probab=97.54 E-value=9.5e-05 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 427
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.0002 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 428
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.53 E-value=0.00028 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 33689999999999999999987
No 429
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0001 Score=54.08 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=65.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCCCC--------cCCcceE----EEEEEECCeEEEEEeCCCCccc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPDRI--------VPTVGLN----IGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~~~--------~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
+.-+|.++..-.+||||...+++....-+. +...+-. ..-.|+. ...+++++.++.+.|+||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 344788888899999999999987322110 1000000 0112222 2356778899999999999999
Q ss_pred hhhHHHhhhccCEEEEEEECCCcccH
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~~s~ 107 (128)
+-...++++-.|+++.|+|.+..-.-
T Consensus 116 ~leverclrvldgavav~dasagve~ 141 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEA 141 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccc
Confidence 99999999999999999999865433
No 430
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.53 E-value=0.00014 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++.=+++++|++|+|||||++.+..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455789999999999999999998
No 431
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.53 E-value=0.00022 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999987
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00027 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999987
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.53 E-value=6.4e-05 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
||+++|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999873
No 434
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.53 E-value=0.00019 Score=48.01 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 344689999999999999999987
No 435
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00024 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999987
No 436
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.52 E-value=0.00023 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999987
No 437
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.52 E-value=0.00022 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344789999999999999999987
No 438
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.52 E-value=0.00012 Score=40.42 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
+++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999997
No 439
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00022 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999997
No 440
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00024 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999987
No 441
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.52 E-value=0.00023 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 33689999999999999999997
No 442
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00026 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999987
No 443
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.51 E-value=2.7e-05 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++||+|+||||++|.+..
T Consensus 32 i~~LIGPNGAGKTTlfNlitG 52 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITG 52 (250)
T ss_pred EEEEECCCCCCceeeeeeecc
Confidence 578999999999999999987
No 444
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.0003 Score=49.11 Aligned_cols=60 Identities=30% Similarity=0.453 Sum_probs=40.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC----eEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g 77 (128)
=.++|+.+|..|.|||||+..+.+ .+.......-..|++.....+.++.. ..+++.|+.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFN--t~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFN--TKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhc--cccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 378999999999999999999998 33222222233344444333333332 5788999998
No 445
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.51 E-value=0.00026 Score=48.52 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 33689999999999999999987
No 446
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00011 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||++.++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999998
No 447
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.51 E-value=0.00022 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344678999999999999999987
No 448
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.51 E-value=0.0014 Score=45.65 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=24.0
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 9 ~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..+.....--+++.|++|+||||+++.++.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 3333444455689999999999999999876
No 449
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00022 Score=48.99 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 450
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00024 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 33679999999999999999987
No 451
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50 E-value=0.00026 Score=46.16 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334689999999999999999987
No 452
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.50 E-value=0.00026 Score=48.28 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 33688999999999999999997
No 453
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00026 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334689999999999999999987
No 454
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.49 E-value=0.00025 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999987
No 455
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00025 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 456
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00026 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 457
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.49 E-value=0.0003 Score=46.73 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+--.++++|++|+|||||++.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455789999999999999999987
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.49 E-value=0.00016 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++.=+++++|++|+|||||++.+..
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556889999999999999999998
No 459
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00026 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|+|||||++.+..
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999997
No 460
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.49 E-value=0.00012 Score=57.32 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++-=+++++|++|+|||||++.+..
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455899999999999999999998
No 461
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.48 E-value=0.00029 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 462
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00027 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344779999999999999999987
No 463
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=0.00027 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444789999999999999999997
No 464
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00027 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 33 GEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 33689999999999999999987
No 465
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00027 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 344689999999999999999987
No 466
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.47 E-value=0.00032 Score=47.46 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 33689999999999999999987
No 467
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00029 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344779999999999999999997
No 468
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00028 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34679999999999999999997
No 469
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.47 E-value=0.00026 Score=48.80 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999997
No 470
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00013 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999773
No 471
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.46 E-value=0.00027 Score=50.13 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999997
No 472
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.46 E-value=0.0003 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34679999999999999999997
No 473
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.46 E-value=0.00021 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++--+++++|++|+|||||++.+..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556889999999999999999987
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.46 E-value=0.00016 Score=48.31 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+++..-++++|++|||||||++.+...
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 456677899999999999999999763
No 475
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00018 Score=48.75 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=25.8
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC
Q 033075 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67 (128)
Q Consensus 21 ~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 67 (128)
+++||+|||||||.+.+.. .+.|..|.| .+.+++
T Consensus 34 aiMGPNGsGKSTLa~~i~G---------~p~Y~Vt~G----~I~~~G 67 (251)
T COG0396 34 AIMGPNGSGKSTLAYTIMG---------HPKYEVTEG----EILFDG 67 (251)
T ss_pred EEECCCCCCHHHHHHHHhC---------CCCceEecc----eEEECC
Confidence 7899999999999999997 125555555 455555
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.45 E-value=0.00013 Score=47.51 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++||||||+++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.45 E-value=0.00013 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++|+|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 478
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00097 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.+.++|++|+|||||.+.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 33678999999999999999987
No 479
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00031 Score=47.67 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344688999999999999999987
No 480
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00039 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+++-=.+++||+|+|||||++.+-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3444568999999999999998865
No 481
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.45 E-value=0.00034 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 344678999999999999999987
No 482
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0003 Score=47.84 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 33688999999999999999987
No 483
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00028 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999987
No 484
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.45 E-value=0.00034 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 344678999999999999999987
No 485
>PRK14530 adenylate kinase; Provisional
Probab=97.45 E-value=0.00014 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+|+++|++||||||+.+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.45 E-value=0.00014 Score=47.55 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++--.++++|++|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556889999999999999998864
No 487
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.45 E-value=0.00011 Score=54.80 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEe
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D 74 (128)
-+.++|++++|||||.+.+.. ...|+.| .+.+++..+.-||
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG-----------~w~p~~G----~VRLDga~l~qWd 404 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG-----------IWPPTSG----SVRLDGADLRQWD 404 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc-----------ccccCCC----cEEecchhhhcCC
Confidence 468999999999999999998 5556655 4555555555555
No 488
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.44 E-value=0.00023 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++-=+++++|++|+|||||++.+..
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445889999999999999999998
No 489
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.44 E-value=0.00014 Score=44.38 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033075 20 VLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~ 40 (128)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 490
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.44 E-value=0.00027 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34678999999999999999997
No 491
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.44 E-value=0.00036 Score=46.76 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444689999999999999999997
No 492
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00032 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334678999999999999999987
No 493
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.44 E-value=0.00035 Score=47.26 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 494
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00029 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999997
No 495
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00037 Score=45.14 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 444789999999999999999987
No 496
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0003 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34679999999999999999987
No 497
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.44 E-value=0.00016 Score=48.56 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.=.++++|++|+|||||++.+..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344688999999999999999987
No 498
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00015 Score=44.37 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999998
No 499
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00016 Score=44.14 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|++|+|||++++.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999987
No 500
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00031 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999997
Done!