Query 033075
Match_columns 128
No_of_seqs 124 out of 1230
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 99.9 4.3E-26 1.5E-30 148.2 12.4 113 1-121 1-113 (187)
2 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-25 3.9E-30 145.4 9.0 114 1-121 1-115 (183)
3 1ksh_A ARF-like protein 2; sma 99.9 9.7E-25 3.3E-29 141.5 12.5 114 4-125 5-119 (186)
4 2x77_A ADP-ribosylation factor 99.9 1.7E-25 5.7E-30 145.6 7.6 119 1-126 3-124 (189)
5 4dkx_A RAS-related protein RAB 99.9 1.6E-24 5.5E-29 144.6 10.8 100 15-120 11-114 (216)
6 1m2o_B GTP-binding protein SAR 99.9 1.2E-23 4.1E-28 137.3 13.6 120 1-127 6-126 (190)
7 2b6h_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 140.2 10.8 116 4-126 16-131 (192)
8 1f6b_A SAR1; gtpases, N-termin 99.9 8E-24 2.7E-28 139.1 11.0 115 6-127 13-128 (198)
9 1zd9_A ADP-ribosylation factor 99.9 5.9E-23 2E-27 133.6 14.7 109 12-126 17-125 (188)
10 1fzq_A ADP-ribosylation factor 99.9 8.4E-23 2.9E-27 132.3 13.5 106 15-127 14-119 (181)
11 1r8s_A ADP-ribosylation factor 99.9 1.3E-22 4.3E-27 128.8 13.1 102 18-126 1-102 (164)
12 1upt_A ARL1, ADP-ribosylation 99.9 2.2E-22 7.6E-27 128.4 13.5 104 15-125 5-108 (171)
13 4bas_A ADP-ribosylation factor 99.9 1.1E-22 3.7E-27 132.9 12.3 103 14-122 14-117 (199)
14 2h17_A ADP-ribosylation factor 99.9 1.1E-22 3.9E-27 131.5 9.7 101 14-121 18-118 (181)
15 2h57_A ADP-ribosylation factor 99.9 1.9E-22 6.4E-27 131.3 10.6 103 14-122 18-121 (190)
16 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-21 3.7E-26 127.5 13.9 102 14-126 17-120 (184)
17 2hxs_A RAB-26, RAS-related pro 99.9 5.2E-22 1.8E-26 127.5 9.8 100 14-119 3-107 (178)
18 1c1y_A RAS-related protein RAP 99.9 1.7E-21 5.8E-26 123.7 11.7 99 16-120 2-103 (167)
19 3kkq_A RAS-related protein M-R 99.9 1.9E-21 6.4E-26 125.6 11.9 101 14-120 15-118 (183)
20 1u8z_A RAS-related protein RAL 99.9 3.3E-21 1.1E-25 122.2 12.8 100 16-121 3-105 (168)
21 3t5g_A GTP-binding protein RHE 99.9 1.4E-21 4.8E-26 126.0 11.1 103 14-122 3-108 (181)
22 1kao_A RAP2A; GTP-binding prot 99.9 5.9E-21 2E-25 120.9 13.7 100 16-121 2-104 (167)
23 1z06_A RAS-related protein RAB 99.9 2.6E-21 9E-26 125.7 12.1 102 14-121 17-123 (189)
24 2fn4_A P23, RAS-related protei 99.9 3.1E-21 1.1E-25 123.9 12.2 100 15-120 7-109 (181)
25 1ek0_A Protein (GTP-binding pr 99.9 7.4E-21 2.5E-25 120.9 13.5 99 16-120 2-104 (170)
26 3bc1_A RAS-related protein RAB 99.9 3.3E-21 1.1E-25 125.0 12.0 101 15-121 9-123 (195)
27 2atv_A RERG, RAS-like estrogen 99.9 4.2E-21 1.4E-25 125.5 12.4 103 11-120 22-127 (196)
28 1r2q_A RAS-related protein RAB 99.9 7.6E-21 2.6E-25 120.8 13.3 100 15-120 4-107 (170)
29 1x3s_A RAS-related protein RAB 99.9 4.1E-21 1.4E-25 124.9 12.1 101 15-121 13-117 (195)
30 4dsu_A GTPase KRAS, isoform 2B 99.9 7E-21 2.4E-25 123.1 13.0 102 15-122 2-106 (189)
31 2hup_A RAS-related protein RAB 99.9 4.1E-21 1.4E-25 126.3 11.9 100 15-120 27-130 (201)
32 2bov_A RAla, RAS-related prote 99.9 9.8E-21 3.3E-25 124.1 13.5 103 13-121 10-115 (206)
33 2a9k_A RAS-related protein RAL 99.9 8.6E-21 2.9E-25 122.4 13.0 101 15-121 16-119 (187)
34 3c5c_A RAS-like protein 12; GD 99.9 8.1E-21 2.8E-25 123.5 12.8 101 13-120 17-120 (187)
35 3oes_A GTPase rhebl1; small GT 99.9 4.6E-21 1.6E-25 125.8 11.2 109 12-126 19-130 (201)
36 2ew1_A RAS-related protein RAB 99.9 7.8E-21 2.7E-25 125.2 12.2 99 15-119 24-126 (201)
37 1z0f_A RAB14, member RAS oncog 99.9 1.4E-20 4.8E-25 120.6 13.1 101 13-119 11-115 (179)
38 2efe_B Small GTP-binding prote 99.9 1.7E-20 5.9E-25 120.6 13.5 101 14-120 9-113 (181)
39 2p5s_A RAS and EF-hand domain 99.9 9.4E-21 3.2E-25 124.2 12.2 103 11-119 22-128 (199)
40 2fg5_A RAB-22B, RAS-related pr 99.9 1.6E-20 5.6E-25 122.4 12.8 99 15-119 21-123 (192)
41 3clv_A RAB5 protein, putative; 99.9 1.6E-20 5.5E-25 122.5 12.7 100 14-119 4-144 (208)
42 1z08_A RAS-related protein RAB 99.9 7.8E-21 2.7E-25 121.0 10.9 99 15-119 4-106 (170)
43 1m7b_A RND3/RHOE small GTP-bin 99.9 8E-21 2.7E-25 123.0 11.1 100 14-119 4-107 (184)
44 3q3j_B RHO-related GTP-binding 99.9 8.7E-21 3E-25 125.9 11.5 100 15-120 25-128 (214)
45 1wms_A RAB-9, RAB9, RAS-relate 99.9 2E-20 6.8E-25 119.9 12.7 99 15-119 5-107 (177)
46 1z2a_A RAS-related protein RAB 99.9 9.7E-21 3.3E-25 120.3 11.0 100 15-120 3-106 (168)
47 1z0j_A RAB-22, RAS-related pro 99.9 2.7E-20 9.1E-25 118.4 13.0 99 15-119 4-106 (170)
48 2bme_A RAB4A, RAS-related prot 99.9 1.9E-20 6.6E-25 121.0 12.5 99 15-119 8-110 (186)
49 3tkl_A RAS-related protein RAB 99.8 2.3E-20 7.8E-25 121.5 12.6 100 15-120 14-117 (196)
50 2ce2_X GTPase HRAS; signaling 99.8 2.6E-20 9E-25 117.7 12.5 99 16-120 2-103 (166)
51 3reg_A RHO-like small GTPase; 99.8 1.5E-20 5.1E-25 122.6 11.6 99 14-118 20-122 (194)
52 3q72_A GTP-binding protein RAD 99.8 1.2E-20 4.1E-25 119.9 10.9 104 17-127 2-108 (166)
53 2y8e_A RAB-protein 6, GH09086P 99.8 3E-20 1E-24 119.1 12.4 99 15-119 12-114 (179)
54 2oil_A CATX-8, RAS-related pro 99.8 2.3E-20 8E-25 121.5 12.0 100 15-120 23-126 (193)
55 2erx_A GTP-binding protein DI- 99.8 3E-20 1E-24 118.3 12.2 98 16-119 2-102 (172)
56 1zbd_A Rabphilin-3A; G protein 99.8 4.3E-20 1.5E-24 121.1 13.3 99 15-119 6-108 (203)
57 3tw8_B RAS-related protein RAB 99.8 1.3E-20 4.4E-25 121.0 10.6 99 15-119 7-109 (181)
58 2f7s_A C25KG, RAS-related prot 99.8 3.2E-21 1.1E-25 127.8 7.9 101 15-121 23-137 (217)
59 2a5j_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 122.5 10.8 99 15-119 19-121 (191)
60 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-20 7.4E-25 137.5 13.1 106 15-127 320-425 (497)
61 1gwn_A RHO-related GTP-binding 99.8 1.5E-20 5.2E-25 124.1 11.0 100 14-119 25-128 (205)
62 2fu5_C RAS-related protein RAB 99.8 2.4E-21 8.1E-26 125.1 6.6 99 15-119 6-108 (183)
63 2j0v_A RAC-like GTP-binding pr 99.8 1.4E-20 4.8E-25 124.2 10.5 100 14-119 6-109 (212)
64 2il1_A RAB12; G-protein, GDP, 99.8 2.5E-20 8.7E-25 121.6 11.5 99 15-119 24-126 (192)
65 3o47_A ADP-ribosylation factor 99.8 8.7E-21 3E-25 133.5 9.8 107 14-127 162-268 (329)
66 2bcg_Y Protein YP2, GTP-bindin 99.8 2.9E-20 9.8E-25 122.3 11.6 99 15-119 6-108 (206)
67 2q3h_A RAS homolog gene family 99.8 1.7E-20 5.9E-25 122.8 10.3 100 14-119 17-120 (201)
68 1g16_A RAS-related protein SEC 99.8 1.3E-20 4.5E-25 119.8 9.4 99 16-120 2-104 (170)
69 1mh1_A RAC1; GTP-binding, GTPa 99.8 4E-20 1.4E-24 119.3 11.7 99 15-119 3-105 (186)
70 1ky3_A GTP-binding protein YPT 99.8 1.8E-20 6.3E-25 120.4 10.1 101 14-120 5-110 (182)
71 3cbq_A GTP-binding protein REM 99.8 2.8E-20 9.7E-25 121.9 11.1 103 14-120 20-125 (195)
72 2atx_A Small GTP binding prote 99.8 1.9E-20 6.4E-25 122.0 10.2 99 15-119 16-118 (194)
73 4gzl_A RAS-related C3 botulinu 99.8 2.7E-20 9.4E-25 122.6 11.0 102 12-119 25-130 (204)
74 2iwr_A Centaurin gamma 1; ANK 99.8 5.8E-20 2E-24 118.1 12.2 91 15-117 5-98 (178)
75 2g6b_A RAS-related protein RAB 99.8 4.7E-20 1.6E-24 118.5 11.8 99 15-119 8-111 (180)
76 2gf9_A RAS-related protein RAB 99.8 4.5E-20 1.5E-24 119.9 11.7 99 15-119 20-122 (189)
77 3con_A GTPase NRAS; structural 99.8 4.3E-20 1.5E-24 119.9 11.6 101 14-120 18-121 (190)
78 2nzj_A GTP-binding protein REM 99.8 1.1E-19 3.7E-24 116.2 12.6 100 15-121 2-107 (175)
79 3cpj_B GTP-binding protein YPT 99.8 3.8E-20 1.3E-24 123.3 10.8 99 15-119 11-113 (223)
80 3cph_A RAS-related protein SEC 99.8 6.4E-20 2.2E-24 120.9 11.7 99 15-119 18-120 (213)
81 2gf0_A GTP-binding protein DI- 99.8 6.6E-20 2.2E-24 119.6 11.5 99 15-119 6-107 (199)
82 1vg8_A RAS-related protein RAB 99.8 3.8E-20 1.3E-24 121.5 10.5 101 14-120 5-109 (207)
83 3dz8_A RAS-related protein RAB 99.8 6.9E-21 2.4E-25 124.0 6.5 99 15-119 21-123 (191)
84 3q85_A GTP-binding protein REM 99.8 4.4E-20 1.5E-24 117.5 10.1 100 17-122 2-106 (169)
85 2gco_A H9, RHO-related GTP-bin 99.8 6E-20 2E-24 120.6 10.7 99 15-119 23-125 (201)
86 2yc2_C IFT27, small RAB-relate 99.8 5.7E-21 2E-25 125.3 5.8 100 15-120 18-125 (208)
87 2j1l_A RHO-related GTP-binding 99.8 4.8E-20 1.7E-24 122.2 10.2 99 15-119 32-134 (214)
88 2o52_A RAS-related protein RAB 99.8 2.1E-20 7.3E-25 122.7 8.4 99 15-119 23-125 (200)
89 2fv8_A H6, RHO-related GTP-bin 99.8 8.5E-20 2.9E-24 120.3 11.3 100 14-119 22-125 (207)
90 3bwd_D RAC-like GTP-binding pr 99.8 1.2E-20 4.2E-25 121.4 6.4 100 14-119 5-108 (182)
91 3r7w_A Gtpase1, GTP-binding pr 99.8 2.3E-19 7.8E-24 125.2 12.8 98 16-117 2-106 (307)
92 3gj0_A GTP-binding nuclear pro 99.8 1.5E-20 5E-25 125.0 5.6 101 14-120 12-116 (221)
93 3t1o_A Gliding protein MGLA; G 99.8 5.3E-20 1.8E-24 119.6 7.7 98 13-117 10-129 (198)
94 2zej_A Dardarin, leucine-rich 99.8 4.4E-20 1.5E-24 119.7 7.1 99 17-119 2-108 (184)
95 4djt_A GTP-binding nuclear pro 99.8 4.6E-20 1.6E-24 122.2 7.1 99 15-119 9-112 (218)
96 2g3y_A GTP-binding protein GEM 99.8 1.5E-18 5.1E-23 115.3 12.9 102 15-121 35-141 (211)
97 2fh5_B SR-beta, signal recogni 99.8 1.1E-18 3.8E-23 115.3 12.0 98 14-118 4-106 (214)
98 3l0i_B RAS-related protein RAB 99.8 1.7E-20 6E-25 122.9 2.9 100 15-120 31-134 (199)
99 2f9l_A RAB11B, member RAS onco 99.8 2.1E-18 7.2E-23 113.0 11.2 97 16-118 4-104 (199)
100 2cjw_A GTP-binding protein GEM 99.8 1.6E-18 5.3E-23 113.3 10.5 100 15-119 4-108 (192)
101 1oix_A RAS-related protein RAB 99.8 4.3E-18 1.5E-22 111.1 11.5 97 16-118 28-128 (191)
102 3th5_A RAS-related C3 botulinu 99.6 2E-20 7E-25 122.9 0.0 102 12-119 25-130 (204)
103 3llu_A RAS-related GTP-binding 99.8 1.1E-18 3.6E-23 114.2 7.8 98 14-118 17-124 (196)
104 2wkq_A NPH1-1, RAS-related C3 99.8 4E-18 1.4E-22 119.0 11.0 99 15-119 153-255 (332)
105 3r7w_B Gtpase2, GTP-binding pr 99.8 1.4E-18 4.6E-23 121.8 7.6 79 19-104 1-85 (331)
106 1nrj_B SR-beta, signal recogni 99.8 9.7E-19 3.3E-23 115.8 6.2 96 14-120 9-112 (218)
107 2ged_A SR-beta, signal recogni 99.7 1.1E-18 3.8E-23 113.4 5.1 95 15-120 46-148 (193)
108 2lkc_A Translation initiation 99.7 4.9E-18 1.7E-22 108.8 6.9 87 14-106 5-93 (178)
109 2wji_A Ferrous iron transport 99.7 1.4E-16 4.9E-21 101.4 13.1 95 16-119 2-106 (165)
110 2gj8_A MNME, tRNA modification 99.7 6.7E-17 2.3E-21 103.8 11.3 98 15-119 2-110 (172)
111 4fid_A G protein alpha subunit 99.7 9.2E-17 3.1E-21 113.2 11.9 75 53-127 146-230 (340)
112 2wjg_A FEOB, ferrous iron tran 99.7 4.3E-16 1.5E-20 100.6 11.2 96 15-119 5-110 (188)
113 2dyk_A GTP-binding protein; GT 99.7 3.6E-16 1.2E-20 98.4 10.4 84 18-107 2-95 (161)
114 2qu8_A Putative nucleolar GTP- 99.7 1E-15 3.6E-20 102.1 12.2 100 15-120 27-139 (228)
115 1svi_A GTP-binding protein YSX 99.7 4.3E-16 1.5E-20 101.2 9.8 90 14-110 20-124 (195)
116 2cxx_A Probable GTP-binding pr 99.7 5.2E-17 1.8E-21 105.0 4.9 90 18-115 2-104 (190)
117 3iev_A GTP-binding protein ERA 99.7 4.4E-15 1.5E-19 103.6 14.6 103 14-119 7-120 (308)
118 3lxx_A GTPase IMAP family memb 99.7 2.4E-15 8.4E-20 101.1 12.7 87 14-106 26-127 (239)
119 3ohm_A Guanine nucleotide-bind 99.7 1.8E-15 6.3E-20 106.2 12.3 75 53-127 152-236 (327)
120 3lxw_A GTPase IMAP family memb 99.6 5E-15 1.7E-19 100.3 13.4 108 9-118 13-133 (247)
121 3def_A T7I23.11 protein; chlor 99.6 5.2E-15 1.8E-19 100.9 12.8 87 15-105 34-130 (262)
122 1azs_C GS-alpha; complex (lyas 99.6 6E-15 2E-19 106.0 13.3 73 55-127 204-286 (402)
123 3iby_A Ferrous iron transport 99.6 9.6E-16 3.3E-20 104.4 8.7 93 18-116 2-108 (256)
124 1wf3_A GTP-binding protein; GT 99.6 1.4E-14 4.7E-19 100.8 14.3 93 16-116 6-109 (301)
125 3dpu_A RAB family protein; roc 99.6 8.3E-16 2.8E-20 114.2 8.2 96 15-119 39-146 (535)
126 3c5h_A Glucocorticoid receptor 99.6 4.1E-17 1.4E-21 111.0 1.1 103 15-120 17-193 (255)
127 2xtp_A GTPase IMAP family memb 99.6 1.6E-14 5.4E-19 98.2 13.8 98 15-118 20-133 (260)
128 3i8s_A Ferrous iron transport 99.6 2.3E-15 8E-20 103.4 9.6 96 16-117 2-111 (274)
129 1cip_A Protein (guanine nucleo 99.6 1.6E-15 5.4E-20 107.6 8.9 74 54-127 179-262 (353)
130 3a1s_A Iron(II) transport prot 99.6 4.8E-15 1.6E-19 101.1 10.9 96 15-119 3-108 (258)
131 3b1v_A Ferrous iron uptake tra 99.6 3.8E-15 1.3E-19 102.3 9.6 92 17-118 3-104 (272)
132 1mky_A Probable GTP-binding pr 99.6 1E-14 3.6E-19 106.0 12.0 95 18-115 2-107 (439)
133 3gee_A MNME, tRNA modification 99.6 2.1E-15 7E-20 110.7 7.5 100 15-117 231-341 (476)
134 3k53_A Ferrous iron transport 99.6 9.1E-15 3.1E-19 100.1 9.7 95 16-119 2-106 (271)
135 1lnz_A SPO0B-associated GTP-bi 99.6 4.8E-15 1.6E-19 104.7 8.2 99 18-120 159-268 (342)
136 3pqc_A Probable GTP-binding pr 99.6 4.5E-15 1.5E-19 96.1 7.3 97 14-117 20-132 (195)
137 2hjg_A GTP-binding protein ENG 99.6 8.8E-15 3E-19 106.3 7.7 98 17-119 3-108 (436)
138 4dhe_A Probable GTP-binding pr 99.6 1.9E-14 6.3E-19 95.4 8.6 91 14-106 26-130 (223)
139 1xzp_A Probable tRNA modificat 99.5 1.2E-14 4.1E-19 106.7 8.1 92 16-110 242-342 (482)
140 1h65_A Chloroplast outer envel 99.5 1E-13 3.4E-18 94.9 11.8 99 16-118 38-146 (270)
141 2hjg_A GTP-binding protein ENG 99.5 1.6E-14 5.4E-19 105.0 7.7 96 16-118 174-283 (436)
142 1jny_A EF-1-alpha, elongation 99.5 1.2E-14 4.1E-19 105.6 6.7 98 14-112 3-127 (435)
143 1jal_A YCHF protein; nucleotid 99.5 1.1E-13 3.6E-18 98.4 10.7 84 17-104 2-109 (363)
144 2e87_A Hypothetical protein PH 99.5 5.4E-13 1.9E-17 94.7 13.2 99 15-119 165-276 (357)
145 2qtf_A Protein HFLX, GTP-bindi 99.5 1.8E-13 6.2E-18 97.4 10.6 89 17-112 178-280 (364)
146 3sjy_A Translation initiation 99.5 3.2E-13 1.1E-17 97.2 12.0 94 14-117 5-124 (403)
147 2xtz_A Guanine nucleotide-bind 99.5 7.7E-14 2.6E-18 99.0 8.0 59 67-125 182-250 (354)
148 3geh_A MNME, tRNA modification 99.5 4.2E-14 1.4E-18 103.5 6.8 99 16-118 223-329 (462)
149 3p26_A Elongation factor 1 alp 99.5 1.7E-13 6E-18 100.7 10.0 93 14-106 30-149 (483)
150 3tr5_A RF-3, peptide chain rel 99.5 2.2E-13 7.6E-18 101.1 9.9 99 15-113 11-127 (528)
151 4dcu_A GTP-binding protein ENG 99.5 3.5E-14 1.2E-18 103.7 5.5 101 15-120 21-129 (456)
152 1zun_B Sulfate adenylate trans 99.5 7.4E-13 2.5E-17 96.2 12.2 93 14-106 21-142 (434)
153 1dar_A EF-G, elongation factor 99.5 5.8E-13 2E-17 101.6 11.3 100 15-114 10-123 (691)
154 3j2k_7 ERF3, eukaryotic polype 99.5 7.2E-13 2.5E-17 96.4 11.3 92 14-105 14-132 (439)
155 2ohf_A Protein OLA1, GTP-bindi 99.5 1.3E-13 4.5E-18 98.8 6.9 90 15-108 20-133 (396)
156 2c78_A Elongation factor TU-A; 99.4 1E-12 3.6E-17 94.6 11.3 103 14-117 8-123 (405)
157 3t5d_A Septin-7; GTP-binding p 99.4 1.5E-12 5.2E-17 89.2 11.6 101 14-119 5-143 (274)
158 1d2e_A Elongation factor TU (E 99.4 6.2E-13 2.1E-17 95.6 9.9 94 16-109 2-107 (397)
159 1s0u_A EIF-2-gamma, translatio 99.4 5.5E-13 1.9E-17 96.1 9.3 89 13-104 4-117 (408)
160 4a9a_A Ribosome-interacting GT 99.4 1.1E-12 3.6E-17 93.7 10.5 86 16-105 71-163 (376)
161 1ega_A Protein (GTP-binding pr 99.4 4.8E-13 1.6E-17 93.0 8.5 97 16-118 7-112 (301)
162 4dcu_A GTP-binding protein ENG 99.4 5.7E-13 2E-17 97.3 9.3 99 15-117 193-302 (456)
163 1kk1_A EIF2gamma; initiation o 99.4 1.2E-12 4.2E-17 94.4 10.4 88 14-104 7-119 (410)
164 1r5b_A Eukaryotic peptide chai 99.4 1E-13 3.5E-18 101.6 4.7 93 12-104 38-157 (467)
165 2h5e_A Peptide chain release f 99.4 2.1E-12 7.3E-17 95.9 11.7 92 15-106 11-120 (529)
166 3qq5_A Small GTP-binding prote 99.4 1.8E-13 6.1E-18 99.1 5.7 96 14-118 31-137 (423)
167 1n0u_A EF-2, elongation factor 99.4 1.1E-12 3.9E-17 101.9 10.3 101 15-115 17-145 (842)
168 1wb1_A Translation elongation 99.4 5.1E-13 1.7E-17 98.2 7.8 90 15-104 17-109 (482)
169 2elf_A Protein translation elo 99.4 6.6E-13 2.3E-17 94.7 8.1 85 19-117 23-107 (370)
170 2xex_A Elongation factor G; GT 99.4 1.2E-12 4.1E-17 99.9 9.9 100 15-114 8-121 (693)
171 3izq_1 HBS1P, elongation facto 99.4 6.2E-13 2.1E-17 100.2 8.2 90 15-104 165-281 (611)
172 1f60_A Elongation factor EEF1A 99.4 9.5E-13 3.3E-17 96.2 8.6 90 15-104 5-121 (458)
173 1wxq_A GTP-binding protein; st 99.4 8.4E-13 2.9E-17 95.0 8.0 83 18-104 1-114 (397)
174 1pui_A ENGB, probable GTP-bind 99.4 1.5E-12 5E-17 85.4 8.1 97 12-115 21-134 (210)
175 1mky_A Probable GTP-binding pr 99.4 2.3E-12 7.7E-17 93.7 9.9 88 16-109 179-281 (439)
176 1g7s_A Translation initiation 99.4 3.3E-13 1.1E-17 101.3 5.6 95 15-111 3-116 (594)
177 3izy_P Translation initiation 99.4 1.8E-14 6.2E-19 106.9 -2.5 91 15-111 2-95 (537)
178 2rdo_7 EF-G, elongation factor 99.4 7.8E-12 2.7E-16 95.6 11.8 99 15-113 8-127 (704)
179 2ywe_A GTP-binding protein LEP 99.4 1E-11 3.6E-16 93.2 12.2 103 15-117 4-122 (600)
180 2qpt_A EH domain-containing pr 99.4 4.6E-12 1.6E-16 94.5 9.9 102 16-119 64-216 (550)
181 3cb4_D GTP-binding protein LEP 99.4 5.9E-12 2E-16 94.6 10.4 102 16-117 3-120 (599)
182 2aka_B Dynamin-1; fusion prote 99.3 1.4E-11 4.8E-16 84.9 11.3 50 68-117 125-188 (299)
183 2dby_A GTP-binding protein; GD 99.3 1.8E-11 6.2E-16 87.2 11.1 82 18-103 2-111 (368)
184 1zo1_I IF2, translation initia 99.3 3.6E-13 1.2E-17 99.2 0.7 86 15-104 2-87 (501)
185 2qag_A Septin-2, protein NEDD5 99.3 5.7E-12 2E-16 89.6 5.9 99 14-117 34-171 (361)
186 2j69_A Bacterial dynamin-like 99.3 2.8E-11 9.7E-16 92.4 10.0 49 69-117 175-226 (695)
187 1jwy_B Dynamin A GTPase domain 99.2 3.4E-11 1.2E-15 83.6 9.0 38 67-104 130-180 (315)
188 2dy1_A Elongation factor G; tr 99.2 1.6E-10 5.5E-15 87.9 13.3 102 15-117 7-122 (665)
189 3avx_A Elongation factor TS, e 99.2 2E-11 6.9E-16 96.9 7.9 93 14-106 293-397 (1289)
190 3t34_A Dynamin-related protein 99.2 8.7E-11 3E-15 83.3 10.5 38 68-105 136-186 (360)
191 1zcb_A G alpha I/13; GTP-bindi 99.2 2.6E-11 8.9E-16 86.3 6.8 73 54-126 187-269 (362)
192 3mca_A HBS1, elongation factor 99.2 2.2E-12 7.6E-17 96.9 0.8 91 14-104 174-291 (592)
193 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.8E-10 6.2E-15 82.6 10.3 86 15-103 18-127 (392)
194 1udx_A The GTP-binding protein 99.2 2.3E-10 7.9E-15 82.7 10.6 97 18-119 158-262 (416)
195 3vqt_A RF-3, peptide chain rel 99.0 2.3E-09 8E-14 79.9 11.2 98 16-113 30-145 (548)
196 2x2e_A Dynamin-1; nitration, h 99.0 3.3E-09 1.1E-13 75.1 9.9 24 16-39 30-53 (353)
197 2qnr_A Septin-2, protein NEDD5 98.9 4.2E-09 1.4E-13 73.2 6.6 26 14-39 15-40 (301)
198 2qag_C Septin-7; cell cycle, c 98.9 4.5E-09 1.6E-13 76.0 6.7 67 15-81 29-101 (418)
199 3j25_A Tetracycline resistance 98.8 5.8E-09 2E-13 79.1 5.1 91 18-108 3-107 (638)
200 2www_A Methylmalonic aciduria 98.7 4E-08 1.4E-12 69.5 8.2 39 66-107 165-203 (349)
201 4fn5_A EF-G 1, elongation fact 98.7 2.1E-07 7.1E-12 71.4 11.5 95 16-110 12-127 (709)
202 3p32_A Probable GTPase RV1496/ 98.6 9.1E-08 3.1E-12 67.8 7.5 39 66-107 170-208 (355)
203 1u0l_A Probable GTPase ENGC; p 98.6 3.4E-09 1.2E-13 73.6 -0.3 79 32-119 32-113 (301)
204 2p67_A LAO/AO transport system 98.6 6E-08 2E-12 68.4 4.6 38 66-106 147-184 (341)
205 3zvr_A Dynamin-1; hydrolase, D 98.5 7.4E-07 2.5E-11 68.7 10.5 24 16-39 50-73 (772)
206 1puj_A YLQF, conserved hypothe 98.5 1.2E-07 4E-12 65.3 5.1 59 15-79 118-176 (282)
207 2qm8_A GTPase/ATPase; G protei 98.5 2.5E-07 8.5E-12 65.2 6.4 37 66-105 146-182 (337)
208 3cnl_A YLQF, putative uncharac 98.5 3.8E-08 1.3E-12 67.1 1.9 54 18-79 100-155 (262)
209 1yrb_A ATP(GTP)binding protein 98.4 9.4E-07 3.2E-11 59.5 6.7 25 15-39 12-36 (262)
210 1f5n_A Interferon-induced guan 98.4 7.5E-07 2.6E-11 67.0 6.3 66 14-80 35-103 (592)
211 2j37_W Signal recognition part 98.3 7.6E-06 2.6E-10 60.6 10.0 91 15-106 99-228 (504)
212 3ec1_A YQEH GTPase; atnos1, at 98.2 1.6E-06 5.6E-11 61.7 5.4 83 16-101 161-255 (369)
213 1bif_A 6-phosphofructo-2-kinas 98.2 1.2E-07 4.1E-12 69.5 -0.6 96 13-116 35-144 (469)
214 3l82_B F-box only protein 4; T 98.2 1E-06 3.5E-11 58.2 3.2 41 75-116 109-149 (227)
215 2qag_B Septin-6, protein NEDD5 98.1 3.4E-05 1.2E-09 55.9 10.7 24 16-39 41-64 (427)
216 2hf9_A Probable hydrogenase ni 98.0 4.9E-06 1.7E-10 54.7 3.5 26 14-39 35-60 (226)
217 3h2y_A GTPase family protein; 97.9 4.8E-06 1.7E-10 59.3 2.9 25 16-40 159-183 (368)
218 3sop_A Neuronal-specific septi 97.9 7.1E-06 2.4E-10 56.1 3.5 24 17-40 2-25 (270)
219 3tif_A Uncharacterized ABC tra 97.9 1.5E-05 5.2E-10 53.3 4.6 22 18-39 32-53 (235)
220 3l2o_B F-box only protein 4; s 97.9 4.1E-06 1.4E-10 57.9 1.7 40 75-115 194-233 (312)
221 2pcj_A ABC transporter, lipopr 97.8 2E-05 7E-10 52.3 4.5 21 19-39 32-52 (224)
222 2onk_A Molybdate/tungstate ABC 97.8 2.5E-05 8.6E-10 52.5 4.9 22 18-39 25-46 (240)
223 1ye8_A Protein THEP1, hypothet 97.8 1.4E-05 4.9E-10 51.2 3.5 22 19-40 2-23 (178)
224 3gfo_A Cobalt import ATP-bindi 97.8 2.4E-05 8.1E-10 53.7 4.7 21 19-39 36-56 (275)
225 1b0u_A Histidine permease; ABC 97.8 2.6E-05 8.9E-10 53.0 4.7 21 19-39 34-54 (262)
226 1g6h_A High-affinity branched- 97.8 2.8E-05 9.7E-10 52.7 4.6 21 19-39 35-55 (257)
227 4g1u_C Hemin import ATP-bindin 97.8 3.8E-05 1.3E-09 52.4 5.2 21 19-39 39-59 (266)
228 1ji0_A ABC transporter; ATP bi 97.8 3.1E-05 1.1E-09 51.9 4.6 21 19-39 34-54 (240)
229 2olj_A Amino acid ABC transpor 97.8 2.9E-05 9.8E-10 52.9 4.5 21 19-39 52-72 (263)
230 1kgd_A CASK, peripheral plasma 97.7 2E-05 6.7E-10 50.5 3.2 23 18-40 6-28 (180)
231 1mv5_A LMRA, multidrug resista 97.7 3.5E-05 1.2E-09 51.8 4.4 23 17-39 28-50 (243)
232 2ff7_A Alpha-hemolysin translo 97.7 5.1E-05 1.8E-09 51.1 5.2 21 19-39 37-57 (247)
233 2wsm_A Hydrogenase expression/ 97.7 3.3E-05 1.1E-09 50.6 4.1 28 12-39 25-52 (221)
234 1sgw_A Putative ABC transporte 97.7 4.2E-05 1.4E-09 50.5 4.6 21 19-39 37-57 (214)
235 2ixe_A Antigen peptide transpo 97.7 3.5E-05 1.2E-09 52.7 4.3 22 18-39 46-67 (271)
236 1lvg_A Guanylate kinase, GMP k 97.7 2.2E-05 7.6E-10 51.0 3.2 24 18-41 5-28 (198)
237 1vpl_A ABC transporter, ATP-bi 97.7 5.6E-05 1.9E-09 51.3 5.0 21 19-39 43-63 (256)
238 3fvq_A Fe(3+) IONS import ATP- 97.7 5.9E-05 2E-09 53.6 5.3 21 19-39 32-52 (359)
239 2pze_A Cystic fibrosis transme 97.7 5E-05 1.7E-09 50.6 4.6 21 19-39 36-56 (229)
240 2yz2_A Putative ABC transporte 97.7 5.1E-05 1.8E-09 51.7 4.6 21 19-39 35-55 (266)
241 3q5d_A Atlastin-1; G protein, 97.7 0.00012 4.1E-09 53.4 6.7 26 15-40 65-90 (447)
242 2ihy_A ABC transporter, ATP-bi 97.7 5.8E-05 2E-09 51.8 4.8 21 19-39 49-69 (279)
243 3a00_A Guanylate kinase, GMP k 97.7 2.9E-05 9.8E-10 49.9 3.1 22 20-41 4-25 (186)
244 3tr0_A Guanylate kinase, GMP k 97.7 3E-05 1E-09 50.1 3.2 23 18-40 8-30 (205)
245 3nh6_A ATP-binding cassette SU 97.6 2.9E-05 9.8E-10 54.0 3.2 24 16-39 79-102 (306)
246 1tq4_A IIGP1, interferon-induc 97.6 0.00011 3.6E-09 53.2 6.2 25 16-40 68-92 (413)
247 3tui_C Methionine import ATP-b 97.6 6.3E-05 2.2E-09 53.5 4.9 21 19-39 56-76 (366)
248 2qi9_C Vitamin B12 import ATP- 97.6 5.4E-05 1.8E-09 51.1 4.4 21 19-39 28-48 (249)
249 1g29_1 MALK, maltose transport 97.6 8.9E-05 3.1E-09 52.9 5.7 21 19-39 31-51 (372)
250 2cbz_A Multidrug resistance-as 97.6 4.6E-05 1.6E-09 51.1 3.9 22 18-39 32-53 (237)
251 1znw_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 50.3 3.2 24 18-41 21-44 (207)
252 1zp6_A Hypothetical protein AT 97.6 3.4E-05 1.2E-09 49.4 3.0 22 18-39 10-31 (191)
253 3rlf_A Maltose/maltodextrin im 97.6 8.1E-05 2.8E-09 53.3 4.9 21 19-39 31-51 (381)
254 1s96_A Guanylate kinase, GMP k 97.6 4.1E-05 1.4E-09 50.7 3.2 24 18-41 17-40 (219)
255 1z47_A CYSA, putative ABC-tran 97.6 8.4E-05 2.9E-09 52.7 4.9 21 19-39 43-63 (355)
256 2yyz_A Sugar ABC transporter, 97.6 8.6E-05 2.9E-09 52.8 4.9 21 19-39 31-51 (359)
257 1z6g_A Guanylate kinase; struc 97.6 4.4E-05 1.5E-09 50.4 3.2 26 16-41 22-47 (218)
258 2d2e_A SUFC protein; ABC-ATPas 97.6 6.3E-05 2.2E-09 50.7 4.0 21 19-39 31-51 (250)
259 3c8u_A Fructokinase; YP_612366 97.6 5.6E-05 1.9E-09 49.4 3.6 26 15-40 20-45 (208)
260 2it1_A 362AA long hypothetical 97.6 9.1E-05 3.1E-09 52.7 4.9 21 19-39 31-51 (362)
261 1v43_A Sugar-binding transport 97.6 0.0001 3.4E-09 52.6 4.9 21 19-39 39-59 (372)
262 3ney_A 55 kDa erythrocyte memb 97.5 5.6E-05 1.9E-09 49.4 3.2 25 17-41 19-43 (197)
263 3asz_A Uridine kinase; cytidin 97.5 6.3E-05 2.2E-09 49.0 3.5 26 15-40 4-29 (211)
264 3tau_A Guanylate kinase, GMP k 97.5 5.6E-05 1.9E-09 49.4 3.2 24 17-40 8-31 (208)
265 1ex7_A Guanylate kinase; subst 97.5 6E-05 2.1E-09 48.8 3.2 21 20-40 4-24 (186)
266 1htw_A HI0065; nucleotide-bind 97.5 6.3E-05 2.2E-09 47.4 3.2 27 15-41 31-57 (158)
267 2bbw_A Adenylate kinase 4, AK4 97.5 6.8E-05 2.3E-09 50.2 3.5 23 16-38 26-48 (246)
268 2pjz_A Hypothetical protein ST 97.5 0.00012 4E-09 49.9 4.7 21 19-39 32-52 (263)
269 1oxx_K GLCV, glucose, ABC tran 97.5 7.2E-05 2.5E-09 53.0 3.7 21 19-39 33-53 (353)
270 2nq2_C Hypothetical ABC transp 97.5 7.2E-05 2.5E-09 50.6 3.4 21 19-39 33-53 (253)
271 4gp7_A Metallophosphoesterase; 97.5 5.6E-05 1.9E-09 48.0 2.6 19 18-36 10-28 (171)
272 3d31_A Sulfate/molybdate ABC t 97.5 8E-05 2.8E-09 52.7 3.6 21 19-39 28-48 (348)
273 1kag_A SKI, shikimate kinase I 97.5 7.5E-05 2.6E-09 47.0 3.2 22 18-39 5-26 (173)
274 2bdt_A BH3686; alpha-beta prot 97.5 7.4E-05 2.5E-09 47.9 3.2 21 19-39 4-24 (189)
275 3ec2_A DNA replication protein 97.5 0.00011 3.8E-09 46.7 3.9 26 15-40 36-61 (180)
276 2j41_A Guanylate kinase; GMP, 97.5 7.8E-05 2.7E-09 48.2 3.1 24 17-40 6-29 (207)
277 2qor_A Guanylate kinase; phosp 97.4 8.4E-05 2.9E-09 48.3 3.2 24 17-40 12-35 (204)
278 3kb2_A SPBC2 prophage-derived 97.4 8.6E-05 2.9E-09 46.5 3.1 21 19-39 3-23 (173)
279 4eun_A Thermoresistant glucoki 97.4 9.4E-05 3.2E-09 47.9 3.2 24 16-39 28-51 (200)
280 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4.1E-09 47.4 3.6 25 15-39 23-47 (199)
281 3lw7_A Adenylate kinase relate 97.4 0.00011 3.7E-09 46.0 3.2 20 18-37 2-21 (179)
282 2bbs_A Cystic fibrosis transme 97.4 0.00012 4.2E-09 50.5 3.7 21 19-39 66-86 (290)
283 3b5x_A Lipid A export ATP-bind 97.4 0.0002 7E-09 53.7 5.2 24 16-39 368-391 (582)
284 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.7E-09 46.4 3.2 22 18-39 3-24 (181)
285 3fb4_A Adenylate kinase; psych 97.4 0.00012 4.2E-09 47.8 3.4 22 18-39 1-22 (216)
286 1qhx_A CPT, protein (chloramph 97.4 0.00012 4E-09 46.3 3.2 21 19-39 5-25 (178)
287 1knq_A Gluconate kinase; ALFA/ 97.4 0.00015 5.2E-09 45.7 3.7 24 16-39 7-30 (175)
288 3dl0_A Adenylate kinase; phosp 97.4 0.00013 4.5E-09 47.7 3.4 22 18-39 1-22 (216)
289 1cke_A CK, MSSA, protein (cyti 97.4 0.00014 4.9E-09 47.7 3.6 22 18-39 6-27 (227)
290 1jbk_A CLPB protein; beta barr 97.4 0.00026 8.9E-09 44.6 4.7 33 7-39 33-65 (195)
291 1aky_A Adenylate kinase; ATP:A 97.4 0.00015 5.1E-09 47.6 3.6 24 16-39 3-26 (220)
292 3b85_A Phosphate starvation-in 97.4 9.8E-05 3.3E-09 48.5 2.7 22 19-40 24-45 (208)
293 3t61_A Gluconokinase; PSI-biol 97.4 0.00012 4.2E-09 47.3 3.2 23 17-39 18-40 (202)
294 2i3b_A HCR-ntpase, human cance 97.4 0.00012 4E-09 47.5 3.0 23 19-41 3-25 (189)
295 2ehv_A Hypothetical protein PH 97.4 0.00012 4.1E-09 48.6 3.1 21 18-38 31-51 (251)
296 2f1r_A Molybdopterin-guanine d 97.3 3.2E-05 1.1E-09 49.4 0.2 21 19-39 4-24 (171)
297 2zu0_C Probable ATP-dependent 97.3 0.00013 4.3E-09 49.8 3.1 21 19-39 48-68 (267)
298 3uie_A Adenylyl-sulfate kinase 97.3 0.0002 6.7E-09 46.4 3.9 25 15-39 23-47 (200)
299 2if2_A Dephospho-COA kinase; a 97.3 0.00016 5.3E-09 46.8 3.3 22 18-39 2-23 (204)
300 2eyu_A Twitching motility prot 97.3 0.00014 4.8E-09 49.4 3.2 26 15-40 23-48 (261)
301 2rcn_A Probable GTPase ENGC; Y 97.3 0.00017 5.9E-09 51.2 3.8 22 18-39 216-237 (358)
302 3b60_A Lipid A export ATP-bind 97.3 0.00028 9.5E-09 53.0 5.1 23 17-39 369-391 (582)
303 2jaq_A Deoxyguanosine kinase; 97.3 0.00017 5.7E-09 46.4 3.5 22 19-40 2-23 (205)
304 2jeo_A Uridine-cytidine kinase 97.3 0.00018 6.2E-09 48.1 3.7 25 15-39 23-47 (245)
305 1u0l_A Probable GTPase ENGC; p 97.3 0.00014 4.9E-09 50.2 3.3 23 17-39 169-191 (301)
306 2ghi_A Transport protein; mult 97.3 0.00014 4.8E-09 49.4 3.1 22 18-39 47-68 (260)
307 2rhm_A Putative kinase; P-loop 97.3 0.0002 6.8E-09 45.7 3.6 23 17-39 5-27 (193)
308 3dm5_A SRP54, signal recogniti 97.3 0.0016 5.4E-08 47.5 8.6 23 17-39 100-122 (443)
309 2yl4_A ATP-binding cassette SU 97.3 0.00018 6.2E-09 54.2 3.8 23 17-39 370-392 (595)
310 1y63_A LMAJ004144AAA protein; 97.3 0.00021 7E-09 45.7 3.6 26 15-40 8-33 (184)
311 1nks_A Adenylate kinase; therm 97.3 0.00018 6E-09 45.9 3.3 22 19-40 3-24 (194)
312 3cm0_A Adenylate kinase; ATP-b 97.3 0.00022 7.6E-09 45.3 3.8 23 17-39 4-26 (186)
313 1kht_A Adenylate kinase; phosp 97.3 0.0002 6.7E-09 45.6 3.5 22 18-39 4-25 (192)
314 3be4_A Adenylate kinase; malar 97.3 0.0002 6.8E-09 47.0 3.6 24 16-39 4-27 (217)
315 3lnc_A Guanylate kinase, GMP k 97.3 8.6E-05 3E-09 49.1 1.8 24 16-39 26-50 (231)
316 3qf4_B Uncharacterized ABC tra 97.3 0.0002 7E-09 53.9 4.0 24 16-39 380-403 (598)
317 2v9p_A Replication protein E1; 97.3 0.00017 5.8E-09 50.1 3.3 26 15-40 124-149 (305)
318 3trf_A Shikimate kinase, SK; a 97.3 0.0002 6.9E-09 45.5 3.5 23 17-39 5-27 (185)
319 3tlx_A Adenylate kinase 2; str 97.3 0.00023 7.7E-09 47.7 3.8 25 15-39 27-51 (243)
320 2cdn_A Adenylate kinase; phosp 97.3 0.00024 8.1E-09 45.9 3.8 25 15-39 18-42 (201)
321 4a74_A DNA repair and recombin 97.3 0.00016 5.6E-09 47.3 3.0 22 18-39 26-47 (231)
322 3sr0_A Adenylate kinase; phosp 97.3 0.0002 7E-09 47.0 3.4 22 18-39 1-22 (206)
323 1jjv_A Dephospho-COA kinase; P 97.3 0.00022 7.5E-09 46.2 3.4 22 18-39 3-24 (206)
324 4a82_A Cystic fibrosis transme 97.2 0.00017 5.7E-09 54.2 3.2 24 16-39 366-389 (578)
325 3szr_A Interferon-induced GTP- 97.2 0.00022 7.6E-09 53.9 3.8 21 19-39 47-67 (608)
326 2yvu_A Probable adenylyl-sulfa 97.2 0.00027 9.3E-09 45.1 3.7 25 15-39 11-35 (186)
327 1e4v_A Adenylate kinase; trans 97.2 0.00022 7.6E-09 46.6 3.3 22 18-39 1-22 (214)
328 2plr_A DTMP kinase, probable t 97.2 0.00027 9.4E-09 45.7 3.7 22 18-39 5-26 (213)
329 1zd8_A GTP:AMP phosphotransfer 97.2 0.00023 8E-09 46.9 3.4 24 16-39 6-29 (227)
330 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00023 8E-09 50.6 3.5 25 15-39 31-55 (362)
331 1lw7_A Transcriptional regulat 97.2 0.00017 5.9E-09 51.1 2.8 25 17-41 170-194 (365)
332 3aez_A Pantothenate kinase; tr 97.2 0.00028 9.4E-09 49.2 3.8 26 15-40 88-113 (312)
333 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00032 1.1E-08 49.2 4.1 24 16-39 170-193 (330)
334 2qt1_A Nicotinamide riboside k 97.2 0.00028 9.4E-09 45.8 3.5 25 16-40 20-44 (207)
335 1tev_A UMP-CMP kinase; ploop, 97.2 0.0003 1E-08 44.9 3.6 23 17-39 3-25 (196)
336 2v54_A DTMP kinase, thymidylat 97.2 0.0003 1E-08 45.3 3.7 24 17-40 4-27 (204)
337 2yv5_A YJEQ protein; hydrolase 97.2 0.00021 7.2E-09 49.5 3.1 22 17-38 165-186 (302)
338 1ukz_A Uridylate kinase; trans 97.2 0.0003 1E-08 45.4 3.6 26 14-39 12-37 (203)
339 2p65_A Hypothetical protein PF 97.2 0.00034 1.2E-08 44.0 3.8 33 8-40 34-66 (187)
340 2c95_A Adenylate kinase 1; tra 97.2 0.00029 9.9E-09 45.1 3.5 24 16-39 8-31 (196)
341 1zak_A Adenylate kinase; ATP:A 97.2 0.00023 7.8E-09 46.8 3.0 24 16-39 4-27 (222)
342 2bwj_A Adenylate kinase 5; pho 97.2 0.0003 1E-08 45.1 3.4 23 17-39 12-34 (199)
343 1via_A Shikimate kinase; struc 97.2 0.00025 8.5E-09 44.8 3.0 21 19-39 6-26 (175)
344 1np6_A Molybdopterin-guanine d 97.2 0.00028 9.7E-09 45.1 3.2 23 17-39 6-28 (174)
345 2gza_A Type IV secretion syste 97.2 0.00033 1.1E-08 49.7 3.8 25 15-39 173-197 (361)
346 3jvv_A Twitching mobility prot 97.2 0.00039 1.3E-08 49.3 4.1 25 15-39 121-145 (356)
347 2pt5_A Shikimate kinase, SK; a 97.2 0.00034 1.2E-08 43.7 3.4 21 19-39 2-22 (168)
348 1uf9_A TT1252 protein; P-loop, 97.1 0.00038 1.3E-08 44.7 3.6 25 15-39 6-30 (203)
349 4f4c_A Multidrug resistance pr 97.1 0.00028 9.5E-09 57.7 3.6 25 15-39 1103-1127(1321)
350 1nn5_A Similar to deoxythymidy 97.1 0.00037 1.2E-08 45.2 3.5 24 16-39 8-31 (215)
351 2wwf_A Thymidilate kinase, put 97.1 0.00037 1.3E-08 45.2 3.4 24 16-39 9-32 (212)
352 4e22_A Cytidylate kinase; P-lo 97.1 0.00039 1.3E-08 46.8 3.5 23 16-38 26-48 (252)
353 1gvn_B Zeta; postsegregational 97.1 0.00039 1.4E-08 47.7 3.6 24 16-39 32-55 (287)
354 1odf_A YGR205W, hypothetical 3 97.1 0.00045 1.5E-08 47.6 3.9 25 15-39 29-53 (290)
355 2xb4_A Adenylate kinase; ATP-b 97.1 0.0004 1.4E-08 45.8 3.5 21 19-39 2-22 (223)
356 1j8m_F SRP54, signal recogniti 97.1 0.003 1E-07 43.6 8.0 23 17-39 98-120 (297)
357 3iij_A Coilin-interacting nucl 97.1 0.00038 1.3E-08 44.1 3.2 23 17-39 11-33 (180)
358 3ozx_A RNAse L inhibitor; ATP 97.1 0.0004 1.4E-08 51.8 3.7 22 19-40 27-48 (538)
359 2x8a_A Nuclear valosin-contain 97.1 0.00061 2.1E-08 46.5 4.3 21 19-39 46-66 (274)
360 1yqt_A RNAse L inhibitor; ATP- 97.1 0.0005 1.7E-08 51.3 4.1 22 19-40 49-70 (538)
361 1qf9_A UMP/CMP kinase, protein 97.1 0.00049 1.7E-08 43.8 3.6 23 17-39 6-28 (194)
362 2ze6_A Isopentenyl transferase 97.1 0.00038 1.3E-08 46.9 3.2 21 19-39 3-23 (253)
363 2z0h_A DTMP kinase, thymidylat 97.1 0.00039 1.3E-08 44.5 3.2 22 19-40 2-23 (197)
364 3qf4_A ABC transporter, ATP-bi 97.1 0.00044 1.5E-08 52.1 3.8 23 17-39 369-391 (587)
365 2kjq_A DNAA-related protein; s 97.1 0.00028 9.7E-09 43.8 2.4 23 17-39 36-58 (149)
366 1rj9_A FTSY, signal recognitio 97.1 0.00037 1.3E-08 48.4 3.2 24 17-40 102-125 (304)
367 2pbr_A DTMP kinase, thymidylat 97.1 0.00045 1.5E-08 44.0 3.4 21 19-39 2-22 (195)
368 1sq5_A Pantothenate kinase; P- 97.1 0.00047 1.6E-08 47.8 3.7 26 15-40 78-103 (308)
369 1rz3_A Hypothetical protein rb 97.1 0.00052 1.8E-08 44.5 3.7 25 15-39 20-44 (201)
370 3b9q_A Chloroplast SRP recepto 97.0 0.00039 1.3E-08 48.2 3.2 24 17-40 100-123 (302)
371 3tqc_A Pantothenate kinase; bi 97.0 0.00053 1.8E-08 48.0 3.9 25 16-40 91-115 (321)
372 3kta_A Chromosome segregation 97.0 0.00041 1.4E-08 44.0 3.0 21 19-39 28-48 (182)
373 1ixz_A ATP-dependent metallopr 97.0 0.00044 1.5E-08 46.3 3.2 21 19-39 51-71 (254)
374 3j16_B RLI1P; ribosome recycli 97.0 0.00052 1.8E-08 51.9 3.9 21 19-39 105-125 (608)
375 1ak2_A Adenylate kinase isoenz 97.0 0.00057 1.9E-08 45.3 3.7 24 16-39 15-38 (233)
376 2ewv_A Twitching motility prot 97.0 0.00068 2.3E-08 48.3 4.1 26 15-40 134-159 (372)
377 1e6c_A Shikimate kinase; phosp 97.0 0.00052 1.8E-08 43.0 3.2 21 19-39 4-24 (173)
378 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00059 2E-08 46.1 3.7 23 17-39 4-26 (260)
379 1xjc_A MOBB protein homolog; s 97.0 0.00061 2.1E-08 43.4 3.5 23 17-39 4-26 (169)
380 1t9h_A YLOQ, probable GTPase E 97.0 0.00011 3.6E-09 51.2 -0.1 23 17-39 173-195 (307)
381 3e70_C DPA, signal recognition 97.0 0.00047 1.6E-08 48.3 3.2 26 15-40 127-152 (328)
382 2p5t_B PEZT; postsegregational 97.0 0.00038 1.3E-08 46.8 2.6 25 16-40 31-55 (253)
383 2vli_A Antibiotic resistance p 97.0 0.00037 1.3E-08 44.1 2.5 23 17-39 5-27 (183)
384 1vht_A Dephospho-COA kinase; s 97.0 0.00066 2.3E-08 44.4 3.8 23 17-39 4-26 (218)
385 3gd7_A Fusion complex of cysti 97.0 0.00042 1.4E-08 49.7 3.0 21 19-39 49-69 (390)
386 3umf_A Adenylate kinase; rossm 97.0 0.00053 1.8E-08 45.4 3.2 23 17-39 28-51 (217)
387 2iyv_A Shikimate kinase, SK; t 97.0 0.00054 1.8E-08 43.5 3.2 21 19-39 4-24 (184)
388 2pez_A Bifunctional 3'-phospho 97.0 0.0007 2.4E-08 42.9 3.7 23 17-39 5-27 (179)
389 1gtv_A TMK, thymidylate kinase 97.0 0.00016 5.6E-09 46.9 0.7 21 19-39 2-22 (214)
390 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00053 1.8E-08 44.8 3.2 22 18-39 24-45 (235)
391 2vp4_A Deoxynucleoside kinase; 97.0 0.00035 1.2E-08 46.3 2.3 26 15-40 18-43 (230)
392 1in4_A RUVB, holliday junction 96.9 0.00052 1.8E-08 48.0 3.2 22 18-39 52-73 (334)
393 4f4c_A Multidrug resistance pr 96.9 0.00072 2.5E-08 55.3 4.3 24 16-39 443-466 (1321)
394 1uj2_A Uridine-cytidine kinase 96.9 0.0007 2.4E-08 45.4 3.6 25 15-39 20-44 (252)
395 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00046 1.6E-08 50.5 2.8 26 15-40 136-161 (460)
396 2chg_A Replication factor C sm 96.9 0.0011 3.7E-08 42.7 4.4 22 18-39 39-60 (226)
397 1p9r_A General secretion pathw 96.9 0.001 3.5E-08 48.2 4.5 25 15-39 165-189 (418)
398 2obl_A ESCN; ATPase, hydrolase 96.9 0.00063 2.1E-08 48.1 3.3 24 16-39 70-93 (347)
399 3bk7_A ABC transporter ATP-bin 96.9 0.00075 2.6E-08 51.1 3.9 22 19-40 119-140 (607)
400 1iy2_A ATP-dependent metallopr 96.9 0.00063 2.2E-08 46.2 3.2 21 19-39 75-95 (278)
401 2oap_1 GSPE-2, type II secreti 96.9 0.00072 2.5E-08 50.1 3.7 22 18-39 261-282 (511)
402 3bos_A Putative DNA replicatio 96.9 0.0016 5.3E-08 42.7 5.0 24 16-39 51-74 (242)
403 3r20_A Cytidylate kinase; stru 96.9 0.0008 2.8E-08 45.0 3.5 24 16-39 8-31 (233)
404 2og2_A Putative signal recogni 96.9 0.00066 2.3E-08 48.2 3.2 24 17-40 157-180 (359)
405 1zuh_A Shikimate kinase; alpha 96.9 0.00087 3E-08 41.9 3.4 22 18-39 8-29 (168)
406 3h4m_A Proteasome-activating n 96.9 0.0012 3.9E-08 44.8 4.3 25 15-39 49-73 (285)
407 3ozx_A RNAse L inhibitor; ATP 96.8 0.00088 3E-08 50.0 3.7 21 19-39 296-316 (538)
408 2f6r_A COA synthase, bifunctio 96.8 0.00092 3.1E-08 45.7 3.6 25 15-39 73-97 (281)
409 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0011 3.6E-08 49.5 4.2 21 19-39 314-334 (538)
410 3euj_A Chromosome partition pr 96.8 0.00063 2.2E-08 50.1 2.9 23 18-40 30-52 (483)
411 4eaq_A DTMP kinase, thymidylat 96.8 0.0011 3.7E-08 44.1 3.8 26 16-41 25-50 (229)
412 1cr0_A DNA primase/helicase; R 96.8 0.00073 2.5E-08 46.3 3.0 22 18-39 36-57 (296)
413 3nwj_A ATSK2; P loop, shikimat 96.8 0.00072 2.5E-08 45.6 2.9 23 17-39 48-70 (250)
414 3g5u_A MCG1178, multidrug resi 96.8 0.00099 3.4E-08 54.4 4.2 24 16-39 415-438 (1284)
415 1lv7_A FTSH; alpha/beta domain 96.8 0.0009 3.1E-08 44.8 3.4 23 17-39 45-67 (257)
416 3bk7_A ABC transporter ATP-bin 96.8 0.001 3.5E-08 50.4 3.9 21 19-39 384-404 (607)
417 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.9E-08 43.1 3.7 25 15-39 23-47 (211)
418 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00094 3.2E-08 41.4 3.1 20 20-39 26-45 (149)
419 2yhs_A FTSY, cell division pro 96.8 0.00081 2.8E-08 49.7 3.2 25 16-40 292-316 (503)
420 1n0w_A DNA repair protein RAD5 96.8 0.00091 3.1E-08 44.1 3.2 23 17-39 24-46 (243)
421 2cvh_A DNA repair and recombin 96.8 0.00094 3.2E-08 43.4 3.2 22 18-39 21-42 (220)
422 3pxg_A Negative regulator of g 96.8 0.0015 5.2E-08 47.8 4.5 34 7-40 191-224 (468)
423 2xxa_A Signal recognition part 96.8 0.015 5.2E-07 42.2 9.7 24 16-39 99-122 (433)
424 2grj_A Dephospho-COA kinase; T 96.8 0.0012 4.2E-08 42.7 3.6 25 15-39 10-34 (192)
425 1nij_A Hypothetical protein YJ 96.8 0.0007 2.4E-08 47.1 2.6 21 19-39 6-26 (318)
426 1d2n_A N-ethylmaleimide-sensit 96.8 0.0021 7.1E-08 43.4 4.8 26 14-39 61-86 (272)
427 1ltq_A Polynucleotide kinase; 96.7 0.00099 3.4E-08 45.6 3.2 22 18-39 3-24 (301)
428 2dpy_A FLII, flagellum-specifi 96.7 0.001 3.4E-08 48.5 3.3 25 15-39 155-179 (438)
429 3cf0_A Transitional endoplasmi 96.7 0.0017 5.8E-08 44.7 4.3 25 15-39 47-71 (301)
430 3j16_B RLI1P; ribosome recycli 96.7 0.0015 5E-08 49.5 3.9 20 20-39 381-400 (608)
431 3gmt_A Adenylate kinase; ssgci 96.7 0.0014 4.8E-08 43.7 3.5 24 16-39 7-30 (230)
432 2w58_A DNAI, primosome compone 96.7 0.0013 4.4E-08 42.4 3.2 22 18-39 55-76 (202)
433 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.0012 4E-08 46.9 3.1 20 20-39 26-45 (365)
434 1q3t_A Cytidylate kinase; nucl 96.6 0.0018 6.1E-08 42.9 3.6 25 15-39 14-38 (236)
435 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0029 9.9E-08 44.9 4.8 25 15-39 22-46 (359)
436 1njg_A DNA polymerase III subu 96.6 0.0015 5E-08 42.5 3.1 22 19-40 47-68 (250)
437 4b4t_M 26S protease regulatory 96.6 0.0025 8.6E-08 46.4 4.4 32 8-39 206-237 (434)
438 3b9p_A CG5977-PA, isoform A; A 96.5 0.0016 5.4E-08 44.4 3.1 24 16-39 53-76 (297)
439 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0062 2.1E-07 44.5 6.2 66 14-79 64-151 (457)
440 4b4t_L 26S protease subunit RP 96.5 0.0028 9.5E-08 46.2 4.4 32 8-39 206-237 (437)
441 3v9p_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 43.3 3.0 24 16-39 24-47 (227)
442 1sxj_C Activator 1 40 kDa subu 96.5 0.0028 9.4E-08 44.3 4.3 21 19-39 48-68 (340)
443 3t15_A Ribulose bisphosphate c 96.5 0.002 6.8E-08 44.3 3.5 23 17-39 36-58 (293)
444 1nlf_A Regulatory protein REPA 96.5 0.0016 5.6E-08 44.2 3.0 22 18-39 31-52 (279)
445 3zvl_A Bifunctional polynucleo 96.5 0.0019 6.6E-08 46.6 3.4 25 15-39 256-280 (416)
446 4b4t_K 26S protease regulatory 96.5 0.003 1E-07 45.8 4.4 26 14-39 203-228 (428)
447 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.7E-08 41.5 3.2 21 19-39 4-24 (208)
448 1sxj_D Activator 1 41 kDa subu 96.5 0.003 1E-07 43.9 4.3 22 18-39 59-80 (353)
449 3syl_A Protein CBBX; photosynt 96.5 0.0023 7.7E-08 43.8 3.6 25 15-39 65-89 (309)
450 1sxj_E Activator 1 40 kDa subu 96.5 0.0022 7.4E-08 44.8 3.6 21 19-39 38-58 (354)
451 1a7j_A Phosphoribulokinase; tr 96.5 0.0011 3.6E-08 45.7 1.9 24 16-39 4-27 (290)
452 1svm_A Large T antigen; AAA+ f 96.5 0.0024 8.1E-08 45.7 3.7 25 15-39 167-191 (377)
453 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0026 8.8E-08 42.4 3.8 23 17-39 39-61 (262)
454 3g5u_A MCG1178, multidrug resi 96.5 0.0025 8.4E-08 52.1 4.2 23 17-39 1059-1081(1284)
455 3n70_A Transport activator; si 96.4 0.0023 7.8E-08 39.2 3.2 25 15-39 22-46 (145)
456 4b4t_J 26S protease regulatory 96.4 0.003 1E-07 45.5 4.0 33 7-39 172-204 (405)
457 2iw3_A Elongation factor 3A; a 96.4 0.0011 3.9E-08 52.6 2.0 21 19-39 701-721 (986)
458 1l8q_A Chromosomal replication 96.4 0.0021 7.2E-08 44.5 3.1 22 18-39 38-59 (324)
459 2px0_A Flagellar biosynthesis 96.4 0.0021 7.2E-08 44.4 3.0 24 17-40 105-128 (296)
460 3qks_A DNA double-strand break 96.4 0.0024 8.1E-08 41.6 3.1 21 19-39 25-45 (203)
461 2dr3_A UPF0273 protein PH0284; 96.4 0.0022 7.5E-08 42.3 3.0 21 19-39 25-45 (247)
462 1p5z_B DCK, deoxycytidine kina 96.4 0.0016 5.4E-08 43.9 2.3 24 16-39 23-46 (263)
463 3pxi_A Negative regulator of g 96.4 0.0037 1.3E-07 48.3 4.5 35 6-40 190-224 (758)
464 4fcw_A Chaperone protein CLPB; 96.4 0.0031 1.1E-07 43.1 3.8 22 18-39 48-69 (311)
465 2qby_A CDC6 homolog 1, cell di 96.3 0.0024 8.1E-08 44.7 3.1 24 16-39 44-67 (386)
466 3crm_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 44.5 3.2 23 18-40 6-28 (323)
467 1ofh_A ATP-dependent HSL prote 96.3 0.0028 9.5E-08 43.2 3.2 24 16-39 49-72 (310)
468 1vma_A Cell division protein F 96.3 0.0028 9.6E-08 44.0 3.2 24 17-40 104-127 (306)
469 3d3q_A TRNA delta(2)-isopenten 96.3 0.0027 9.4E-08 44.7 3.2 23 18-40 8-30 (340)
470 1pzn_A RAD51, DNA repair and r 96.3 0.0025 8.6E-08 45.0 2.9 24 16-39 130-153 (349)
471 3a8t_A Adenylate isopentenyltr 96.3 0.0036 1.2E-07 44.1 3.7 23 18-40 41-63 (339)
472 1fnn_A CDC6P, cell division co 96.2 0.003 1E-07 44.4 3.2 21 19-39 46-66 (389)
473 1tf7_A KAIC; homohexamer, hexa 96.2 0.0026 9E-08 47.2 2.9 20 18-37 40-59 (525)
474 1tue_A Replication protein E1; 96.2 0.0027 9.4E-08 41.7 2.7 23 17-39 58-80 (212)
475 2qmh_A HPR kinase/phosphorylas 96.2 0.0031 1.1E-07 41.2 3.0 23 17-39 34-56 (205)
476 2ocp_A DGK, deoxyguanosine kin 96.2 0.0039 1.3E-07 41.4 3.6 23 18-40 3-25 (241)
477 2r62_A Cell division protease 96.2 0.0019 6.4E-08 43.4 1.8 23 18-40 45-67 (268)
478 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0058 2E-07 47.1 4.8 34 7-40 197-230 (758)
479 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0033 1.1E-07 43.7 3.1 23 17-39 45-67 (322)
480 4b4t_I 26S protease regulatory 96.1 0.0062 2.1E-07 44.3 4.4 32 8-39 207-238 (437)
481 4b4t_H 26S protease regulatory 96.1 0.0052 1.8E-07 45.0 4.0 32 8-39 234-265 (467)
482 2h92_A Cytidylate kinase; ross 96.1 0.0038 1.3E-07 40.6 3.1 22 18-39 4-25 (219)
483 3eie_A Vacuolar protein sortin 96.1 0.0045 1.6E-07 42.9 3.6 23 17-39 51-73 (322)
484 3cr8_A Sulfate adenylyltranfer 96.1 0.0024 8.2E-08 47.8 2.2 25 16-40 368-392 (552)
485 2iw3_A Elongation factor 3A; a 96.1 0.0036 1.2E-07 49.8 3.3 21 19-39 463-483 (986)
486 4edh_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 40.8 3.2 23 17-39 6-28 (213)
487 3uk6_A RUVB-like 2; hexameric 96.1 0.007 2.4E-07 42.4 4.4 23 18-40 71-93 (368)
488 1iqp_A RFCS; clamp loader, ext 96.1 0.0076 2.6E-07 41.3 4.6 21 19-39 48-68 (327)
489 3qkt_A DNA double-strand break 96.1 0.0039 1.3E-07 43.7 3.1 19 21-39 27-45 (339)
490 3m6a_A ATP-dependent protease 96.1 0.0038 1.3E-07 46.6 3.1 24 17-40 108-131 (543)
491 3exa_A TRNA delta(2)-isopenten 96.1 0.0054 1.8E-07 42.9 3.7 21 19-39 5-25 (322)
492 1e69_A Chromosome segregation 96.0 0.0031 1.1E-07 43.8 2.4 21 19-39 26-46 (322)
493 2v1u_A Cell division control p 96.0 0.0036 1.2E-07 43.8 2.8 24 16-39 43-66 (387)
494 1um8_A ATP-dependent CLP prote 96.0 0.0048 1.6E-07 43.6 3.4 24 16-39 71-94 (376)
495 2qen_A Walker-type ATPase; unk 96.0 0.0046 1.6E-07 42.7 3.2 22 18-39 32-53 (350)
496 3te6_A Regulatory protein SIR3 96.0 0.0044 1.5E-07 43.3 3.1 29 12-40 40-68 (318)
497 1ypw_A Transitional endoplasmi 96.0 0.0042 1.4E-07 48.5 3.2 25 15-39 236-260 (806)
498 3lv8_A DTMP kinase, thymidylat 96.0 0.0054 1.9E-07 41.0 3.4 24 16-39 26-49 (236)
499 1qvr_A CLPB protein; coiled co 96.0 0.005 1.7E-07 48.2 3.6 34 7-40 181-214 (854)
500 3foz_A TRNA delta(2)-isopenten 96.0 0.0067 2.3E-07 42.3 3.8 22 18-39 11-32 (316)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.3e-26 Score=148.23 Aligned_cols=113 Identities=35% Similarity=0.688 Sum_probs=98.2
Q ss_pred ChhhhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
||+++++++. +++++.+||+++|+++||||||++++.. +.+. .+.+|.+.....+.+++..+.+||++|.+.
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence 8999999999 7788999999999999999999999997 5555 567788877778888899999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+...+..+++++|++++|+|++++++++++..|+.++....
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 113 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999998764
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.1e-25 Score=145.36 Aligned_cols=114 Identities=35% Similarity=0.660 Sum_probs=98.2
Q ss_pred ChhhhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
||++++++++.++. ++.+||+++|++|||||||++++.. +.+ ..+.+|.+.....+.+++..+.+||+||.+
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence 89999999998887 8999999999999999999999987 444 456678887778888888999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
.+...+..+++.+|++++|+|++++++++.+..|+.++....
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh
Confidence 998888999999999999999999999999999999998754
No 3
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=9.7e-25 Score=141.52 Aligned_cols=114 Identities=36% Similarity=0.640 Sum_probs=92.7
Q ss_pred hhHHHHhhhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccch
Q 033075 4 LFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (128)
Q Consensus 4 ~~~~~~~~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 82 (128)
+++ .+..++. ++.+||+++|++++|||||++++.. +. ...+.+|.+.....+.+++..+.+||+||.+.+.
T Consensus 5 ~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 5 LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 544 5666655 7899999999999999999999998 55 5567788998888888889999999999999999
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
..+..+++++|++++|+|++++++++++..|+.++.......+
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 119 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCC
Confidence 9999999999999999999999999999999999987644333
No 4
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=1.7e-25 Score=145.57 Aligned_cols=119 Identities=32% Similarity=0.578 Sum_probs=99.7
Q ss_pred ChhhhHHHHh--hhhc-cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075 1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 1 m~~~~~~~~~--~~~~-~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 77 (128)
||++++++++ .++. ++.+||+++|++++|||||++++.. +.+. .+.+|.+.....+.+++..+.+||+||
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDVV-TTVPTVGVNLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCCE-EECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCCC-CcCCCCceEEEEEEECCEEEEEEECCC
Confidence 8888887777 5556 7899999999999999999999987 4443 356788887788888899999999999
Q ss_pred CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
++.+...+..+++.+|++++|+|++++++++++..|+.++.......+.
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 9999888888999999999999999999999999999999876543333
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=1.6e-24 Score=144.60 Aligned_cols=100 Identities=21% Similarity=0.397 Sum_probs=80.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+++||+++|+++||||||++++.. +.+...+.+|++.+. ..+..++ +.+.+||++|+++|+.++..|++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~ 84 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR 84 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc
Confidence 4679999999999999999999999 889889999998664 3445555 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++++++|||++++++|+++..|+..+...
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~ 114 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTE 114 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988653
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.91 E-value=1.2e-23 Score=137.33 Aligned_cols=120 Identities=32% Similarity=0.583 Sum_probs=91.1
Q ss_pred ChhhhHHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 1 m~~~~~~~~~~~-~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
|+.++.+.+..+ ...+.+||+++|++|||||||++++.. +.+. .+.+|.+.....+.+++..+.+||+||++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN------DRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHH------SCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc------CCCC-ccccCCCCCeEEEEECCEEEEEEECCCCH
Confidence 445555555544 346788999999999999999999998 5543 46688888888888999999999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
.++..+..+++.+|++++|||++++++|+++..|+.++.......+.|
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 126 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC
Confidence 999998999999999999999999999999999999998765444443
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=3.3e-24 Score=140.23 Aligned_cols=116 Identities=33% Similarity=0.637 Sum_probs=94.9
Q ss_pred hhHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 4 ~~~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
+..++++.+..++.+||+++|+++||||||++++.. +.+. .+.||.+.....+...+..+.+||+||.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 88 (192)
T 2b6h_A 16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRP 88 (192)
T ss_dssp -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CT
T ss_pred hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHH
Confidence 344667777788999999999999999999999987 5554 356788887778888889999999999999999
Q ss_pred hHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
.+..+++++|++++|||++++++++.+..|+.++.......+.
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence 9999999999999999999999999999999999876544333
No 8
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=8e-24 Score=139.06 Aligned_cols=115 Identities=27% Similarity=0.464 Sum_probs=89.4
Q ss_pred HHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh
Q 033075 6 YGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (128)
Q Consensus 6 ~~~~~~~-~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (128)
+.++..+ ...+.+||+++|++|||||||++++.. +.+. .+.+|.+.....+.+++..+.+||+||++.++.+
T Consensus 13 ~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD------DRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 85 (198)
T ss_dssp CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCG
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc------CCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHH
Confidence 3444444 346788999999999999999999987 4443 4567777777788888999999999999999999
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+..+++.+|++++|||++++++|+++..|+.++.......+.|
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 128 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence 9999999999999999999999999999999998765444443
No 9
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=5.9e-23 Score=133.61 Aligned_cols=109 Identities=33% Similarity=0.634 Sum_probs=95.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
...++.+||+++|++++|||||++++.. +.+...+.+|.+.....+...+..+.+||++|.+.+...+..+++.
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG 90 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHc------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHcc
Confidence 3456789999999999999999999998 7777777889998888888888999999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
+|++++|||++++++++.+..|+.++.......+.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 125 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 125 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence 99999999999999999999999999876443333
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=8.4e-23 Score=132.33 Aligned_cols=106 Identities=37% Similarity=0.650 Sum_probs=92.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.+.+||+++|++|||||||++++.. +.+ ..+.+|.|.....+.+++..+.+||++|++.++..+..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS------EDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC------SCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc------CCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 5789999999999999999999987 432 356788888878888889999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+++|||++++++++++..|+.+++......+.|
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 119 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 999999999999999999999988765444443
No 11
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=1.3e-22 Score=128.82 Aligned_cols=102 Identities=31% Similarity=0.695 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~ 97 (128)
+||+++|++++|||||++++.. +.+.. +.||.+.....+...+..+.+||+||++.+...+..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL------GEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH------HCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 5899999999999999999998 44443 4678887777787888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 98 VIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
|||++++++++.+..|+.++.......+.
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDA 102 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 99999999999999999999876544333
No 12
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=2.2e-22 Score=128.36 Aligned_cols=104 Identities=36% Similarity=0.655 Sum_probs=91.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
++.+||+++|++++|||||++++.. +.+. .+.+|.+.....+.+++..+.+||+||.+.+...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 4679999999999999999999998 5543 45678888888888889999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCccccc
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
+++|+|++++++++.+..|+.++.......+
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 108 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELRK 108 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhCC
Confidence 9999999999999999999999987654333
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.89 E-value=1.1e-22 Score=132.85 Aligned_cols=103 Identities=30% Similarity=0.600 Sum_probs=90.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
.....||+++|+++||||||++++.. +.+.. .+.+|.+.....+...+..+.+||++|++.+...+..+++.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 45789999999999999999999998 66666 678899988888888889999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
|++++|||++++++|+++..|+.+++....
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~ 117 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHH
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999987743
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=1.1e-22 Score=131.47 Aligned_cols=101 Identities=34% Similarity=0.644 Sum_probs=89.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
..+.+||+++|++++|||||++++.. +.+ ..+.+|.+.....+.+++..+.+||++|.+.+...+..+++.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM------NEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT------TSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc------CCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 35789999999999999999999998 555 46678888777888888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++++|+|++++++++++..|+.++....
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~ 118 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHE 118 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999988764
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=131.28 Aligned_cols=103 Identities=36% Similarity=0.660 Sum_probs=90.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhcc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
..+.+||+++|++++|||||++++.. +. +...+.+|.+.....+.+++..+.+||++|++.+...+..+++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKP------SNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSC------GGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 35789999999999999999999987 44 345677888888888888889999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
|++++|||++++++++.+..|+.++.....
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999887643
No 16
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=1.1e-21 Score=127.54 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=86.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
+.+.+||+++|++|||||||++++.. +.+...+.+|.+.....+.+++ ..+.+||++|++.+. +++.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 46789999999999999999999999 7777777777665556777777 678889999998876 7789
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
+|++++|||++++++|+++..|+.++.......+.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 120 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV 120 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999877544443
No 17
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=5.2e-22 Score=127.46 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=86.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC---eEEEEEeCCCCccchhhHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN---SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~ 88 (128)
..+.+||+++|++++|||||++++.. +.+...+.+|.+ .....+.+++ ..+.+||++|++.+...+..+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 76 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ------ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY 76 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG------GGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh------CcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH
Confidence 35689999999999999999999998 555555667776 4456677766 789999999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++.+|++++|||++++++++++..|+.++..
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 107 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888765
No 18
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=1.7e-21 Score=123.67 Aligned_cols=99 Identities=19% Similarity=0.367 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++++|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||+||.+.+...+..+++.+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG 75 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence 468999999999999999999998 6666677777776543 334443 6799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++++.+..|+..+...
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 103 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILRV 103 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888764
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.87 E-value=1.9e-21 Score=125.55 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=87.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.++.+... .....++ ..+.+||++|++.+...+..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 45789999999999999999999998 666667777777654 4455666 45777999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++|+.+..|+..+...
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRV 118 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988653
No 20
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=3.3e-21 Score=122.18 Aligned_cols=100 Identities=14% Similarity=0.243 Sum_probs=83.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++|+|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..+++.+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 76 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh------CccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcC
Confidence 578999999999999999999998 666666677777654 3455666 5899999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
|++++|||++++++++.+..|+.++....
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 105 (168)
T 1u8z_A 77 EGFLCVFSITEMESFAATADFREQILRVK 105 (168)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887644
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.4e-21 Score=125.96 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=88.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI 76 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh
Confidence 35789999999999999999999998 667777778877654 4555666 67899999999999888889999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
.+|++++|||++++++++.+..|+.++.....
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 108 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998866543
No 22
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=5.9e-21 Score=120.95 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=85.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE-EEEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||++.+..++..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 468999999999999999999998 66666666776644 34556666 5699999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
|++++|||++++++++.+..|+.++....
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 104 (167)
T 1kao_A 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVK 104 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887643
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.87 E-value=2.6e-21 Score=125.73 Aligned_cols=102 Identities=28% Similarity=0.505 Sum_probs=86.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccch-hhHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLR-SIWEKY 88 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~ 88 (128)
..+.+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||++|.+.+. .++..+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 90 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHH
Confidence 35689999999999999999999998 66666666777644 45566666 689999999999998 788999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++.+|++++|||++++.+++.+..|+.++....
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~ 123 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999887643
No 24
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=3.1e-21 Score=123.92 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||.+.+...+..+++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 4679999999999999999999999 666667778877654 4456666 678999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|||++++++++.+..|+.++...
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRV 109 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988654
No 25
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=7.4e-21 Score=120.90 Aligned_cols=99 Identities=24% Similarity=0.459 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
+.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc
Confidence 468999999999999999999998 666666777777553 4555665 689999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|+|++++.+++++..|+..+...
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 104 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQ 104 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888653
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.86 E-value=3.3e-21 Score=124.99 Aligned_cols=101 Identities=21% Similarity=0.370 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE---EEEECC-----------eEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSN-----------SKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~---~~~~~~-----------~~~~~~D~~g~~~ 80 (128)
...+||+++|++++|||||++++.. +.+...+.+|.+.+.. .+..++ ..+.+||+||.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 4679999999999999999999998 6666677788887644 444442 5899999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+...+..+++.+|++++|||++++.+++.+..|+..+....
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 123 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887543
No 27
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.2e-21 Score=125.48 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=84.8
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHH
Q 033075 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEK 87 (128)
Q Consensus 11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~ 87 (128)
.....+.+||+++|++++|||||++++.. +.+...+.++.+.... .+.+++ ..+.+||++|.+. ...+..
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~ 94 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREG 94 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHH
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhh
Confidence 34456789999999999999999999999 6666677788776543 355665 6799999999988 778889
Q ss_pred hhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 88 YYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++.+|++++|||++++++++.+..|+..+...
T Consensus 95 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~ 127 (196)
T 2atv_A 95 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127 (196)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998887664
No 28
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=7.6e-21 Score=120.85 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=86.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 77 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR 77 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc
Confidence 5689999999999999999999998 666666777777653 4455554 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++++.+..|+.++...
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 107 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQ 107 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888654
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.1e-21 Score=124.88 Aligned_cols=101 Identities=27% Similarity=0.469 Sum_probs=87.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. ..+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 4679999999999999999999998 666667777777553 4555655 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
.+|++++|||++++.+++.+..|+.++....
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 117 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYC 117 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987754
No 30
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=7e-21 Score=123.13 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
++.+||+++|++|||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 75 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 4689999999999999999999998 666666666665443 4555666 558889999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+|++++|||++++++++.+..|+..+.....
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (189)
T 4dsu_A 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106 (189)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998876443
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=126.30 Aligned_cols=100 Identities=25% Similarity=0.467 Sum_probs=80.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.+|.+.+ ...+.+++ ..+.+||++|++.+..++..+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence 4579999999999999999999998 66666777777643 45666776 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++++++..|+.++...
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~ 130 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKY 130 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888653
No 32
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=9.8e-21 Score=124.14 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=88.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
...+.++|+++|++|||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 83 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHH
Confidence 345789999999999999999999998 666667777777653 4556666 5899999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+.+|++++|||++++++++.+..|+..+....
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (206)
T 2bov_A 84 RSGEGFLCVFSITEMESFAATADFREQILRVK 115 (206)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887644
No 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=8.6e-21 Score=122.40 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=87.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 89 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 89 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhcc
Confidence 4689999999999999999999998 666667777777654 4455666 579999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+|++++|||++++++++.+..|+.++....
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 119 (187)
T 2a9k_A 90 GEGFLCVFSITEMESFAATADFREQILRVK 119 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887644
No 34
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=8.1e-21 Score=123.52 Aligned_cols=101 Identities=23% Similarity=0.207 Sum_probs=81.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
...+.+||+++|+++||||||++++.. +.+...+.+|.+..+ ..+.+++ ..+.+||++|++.+..+ ..++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~ 89 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLT------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYL 89 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHH
Confidence 346789999999999999999999999 777777788888654 3445555 67899999999988775 5788
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+.+|++++|||++++++|+++..|+.++...
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 120 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754
No 35
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=125.83 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=85.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEEC--CeEEEEEeCCCCccchhhHHHh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~ 88 (128)
....+.+||+++|++|||||||++++.. +.+...+.++.+... ..+.+. ...+.+||++|.+.+...+..+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 92 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVE------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF 92 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH
Confidence 3446789999999999999999999999 777677777777654 223333 3789999999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcCcccccC
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMRICKER 126 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~ 126 (128)
++.+|++++|||++++++++.+..|+..+.......+.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 130 (201)
T 3oes_A 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130 (201)
T ss_dssp TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CC
T ss_pred HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999876443333
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=7.8e-21 Score=125.22 Aligned_cols=99 Identities=29% Similarity=0.535 Sum_probs=86.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.+|.+.+. ..+.+++ ..+.+||++|++.+...+..+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 97 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence 4579999999999999999999998 667667778877653 4566666 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 126 (201)
T 2ew1_A 98 SANALILTYDITCEESFRCLPEWLREIEQ 126 (201)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=1.4e-20 Score=120.65 Aligned_cols=101 Identities=27% Similarity=0.348 Sum_probs=86.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~ 88 (128)
.....+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||.+.+...+..+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 84 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHH
Confidence 345789999999999999999999998 66666666776654 34555655 689999999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++.+|++++|+|++++.+++.+..|+.++..
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARN 115 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=1.7e-20 Score=120.61 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=86.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
+...+||+++|++++|||||++++.. +.+.....++.+.. ...+.+++ ..+.+||+||++.+...+..++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVK------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHH------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred CccceEEEEECcCCCCHHHHHHHHHc------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 35689999999999999999999998 66666666776644 34555665 6899999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+.+|++++|||++++.+++.+..|+..+...
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988754
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=9.4e-21 Score=124.16 Aligned_cols=103 Identities=22% Similarity=0.450 Sum_probs=78.1
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHH
Q 033075 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWE 86 (128)
Q Consensus 11 ~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~ 86 (128)
.+...+.+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||+||.+.+...+.
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 95 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCK------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAK 95 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHH------CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHH
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHh------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHH
Confidence 44556789999999999999999999998 66666666777644 35566666 6799999999999999999
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+++.+|++++|||++++.+++.+..|+..+..
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~ 128 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887754
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.6e-20 Score=122.40 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=86.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+.... .+.+++ ..+.+||+||.+.+...+..+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 5689999999999999999999998 6666677788886543 344443 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~ 123 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKE 123 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=1.6e-20 Score=122.46 Aligned_cols=100 Identities=22% Similarity=0.396 Sum_probs=86.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC------------------------
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN------------------------ 67 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~------------------------ 67 (128)
+.+.+||+++|++++|||||+++++. ..+...+.++.+... ..+.+++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNV 77 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETTC------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccc
Confidence 45789999999999999999999999 666667777777543 3444444
Q ss_pred ---------------eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 68 ---------------SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 68 ---------------~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 144 (208)
T 3clv_A 78 IITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI 144 (208)
T ss_dssp -------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999988865
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=7.8e-21 Score=121.03 Aligned_cols=99 Identities=22% Similarity=0.431 Sum_probs=78.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence 4679999999999999999999998 666667777777654 3555555 68999999999999988889999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|+|++++++++.+..|+..+..
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 106 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRK 106 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888654
No 43
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=8e-21 Score=123.04 Aligned_cols=100 Identities=25% Similarity=0.444 Sum_probs=84.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
....+||+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 77 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 77 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC
Confidence 45789999999999999999999999 677667778877654 3444544 78999999999999999899999
Q ss_pred ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~ 119 (128)
.+|++++|||++++++++++ ..|+..+..
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~ 107 (184)
T 1m7b_A 78 DSDAVLICFDISRPETLDSVLKKWKGEIQE 107 (184)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 678777654
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=8.7e-21 Score=125.92 Aligned_cols=100 Identities=24% Similarity=0.405 Sum_probs=84.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|+++||||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||++|++.+..++..+++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 4689999999999999999999999 7777788888887653 333444 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHH-HHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFED-SKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~-~~~~l~~~~~~ 120 (128)
+|++++|||++++++|++ +..|+..+...
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~ 128 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDY 128 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHH
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 68888887653
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=2e-20 Score=119.94 Aligned_cols=99 Identities=20% Similarity=0.432 Sum_probs=83.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+.+. ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHh
Confidence 4689999999999999999999998 666667777877653 4556666 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 107 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 46
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=9.7e-21 Score=120.26 Aligned_cols=100 Identities=23% Similarity=0.459 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++|+|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||+||++.+...+..+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR 76 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc
Confidence 4689999999999999999999998 66666677776644 34555665 68999999999999888899999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|+|++++++++.+..|+.++...
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 106 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAE 106 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887653
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=2.7e-20 Score=118.44 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=86.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+... ..+.+.+ ..+.+||+||.+.+...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR 77 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc
Confidence 4579999999999999999999999 666667777777653 4455655 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++.+++.+..|+..+..
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 106 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQ 106 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=1.9e-20 Score=120.96 Aligned_cols=99 Identities=26% Similarity=0.373 Sum_probs=85.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 4679999999999999999999998 66666667777754 34556666 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 110 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARM 110 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987754
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=121.54 Aligned_cols=100 Identities=29% Similarity=0.505 Sum_probs=87.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 4678999999999999999999998 66666777777754 45666776 67999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++++.+..|+..+...
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 117 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887543
No 50
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=2.6e-20 Score=117.70 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=83.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++|+|||||++++.. +.+...+.++.+... ..+..++ ..+.+||+||.+.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 75 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh------CcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC
Confidence 368999999999999999999998 555556666666543 4455555 5689999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
|++++|||++++++++++..|+.++...
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~ 103 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIKRV 103 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887654
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=1.5e-20 Score=122.60 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=84.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||++|++.+...+..+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSK------GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhc------CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 35689999999999999999999999 7777777888887653 445555 56799999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHH-HHHHHHHh
Q 033075 91 EAHAVVFVIDAACPSRFEDS-KTALGKFF 118 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~ 118 (128)
++|++++|||++++++++++ ..|+..+.
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 122 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIK 122 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 56776665
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.85 E-value=1.2e-20 Score=119.86 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=63.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhccC
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.+||+++|++|+|||||++++.. .... ...++.+... ..+.+++ ..+.+||++|++.+...+..+++.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 74 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG------VEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD 74 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC------C-----------CEEEEEEEETTEEEEEEEEECC---------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC------cccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCC
Confidence 58999999999999999999986 2222 2234444332 3445555 67899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++++.+..|+.++.......+.|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 108 (166)
T 3q72_A 75 AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP 108 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999998764444433
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=3e-20 Score=119.07 Aligned_cols=99 Identities=21% Similarity=0.411 Sum_probs=85.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
.+.+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||+||.+.+...+..+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 85 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 85 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc
Confidence 3679999999999999999999998 66666667777754 35556666 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|+|++++.+++.+..|+..+..
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 114 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRT 114 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=121.49 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=86.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. ..+...+.++.+... ..+.+.+ ..+.+||++|.+.+...+..+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 4579999999999999999999998 666666677777654 3444544 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++.+++.+..|+..+...
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~ 126 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDH 126 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3e-20 Score=118.31 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=83.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhcc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (128)
+.+||+++|++++|||||++++.. +.+...+.++.+.... .+..++ ..+.+||+||.+.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG 75 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC
Confidence 468999999999999999999998 6666666777776543 334444 6799999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 93 HAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 93 ~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
|++++|+|++++++++.+..|+..+..
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~ 102 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQICE 102 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877654
No 56
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=4.3e-20 Score=121.10 Aligned_cols=99 Identities=25% Similarity=0.391 Sum_probs=85.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+... ..+...+ ..+.+||+||.+.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR 79 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc
Confidence 3578999999999999999999998 666666777777554 4455555 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 108 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKT 108 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 57
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=121.00 Aligned_cols=99 Identities=29% Similarity=0.524 Sum_probs=84.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||.+.+...+..+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 80 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc
Confidence 4679999999999999999999998 66656666777654 45666777 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+..+..
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQ 109 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 58
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=3.2e-21 Score=127.77 Aligned_cols=101 Identities=22% Similarity=0.409 Sum_probs=85.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEEC------------CeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS------------NSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~ 80 (128)
...+||+++|++++|||||++++.. +.+...+.+|.+.+. ..+.++ ...+.+||++|++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 96 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence 4579999999999999999999998 666666677777553 334443 46799999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+...+..+++.+|++++|||++++.+++.+..|+.++....
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~ 137 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887654
No 59
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=1.4e-20 Score=122.52 Aligned_cols=99 Identities=25% Similarity=0.352 Sum_probs=82.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||++|++.+...+..+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 5689999999999999999999998 66665666666643 45566666 68999999999999998999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~ 121 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQ 121 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988865
No 60
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=2.2e-20 Score=137.51 Aligned_cols=106 Identities=36% Similarity=0.720 Sum_probs=94.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
.+.+||+++|.++||||||++++.. +.+. .+.+|.+.....+.+.+..+.+||++|++.++.++..+++.+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~------~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc------CCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 4679999999999999999999998 5433 45689999988898888999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 95 VVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 95 ~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
+|+|||++++++|+++..|+.+++......++|
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 425 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAI 425 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc
Confidence 999999999999999999999998875544443
No 61
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=1.5e-20 Score=124.14 Aligned_cols=100 Identities=25% Similarity=0.444 Sum_probs=84.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
....+||+++|+++||||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 35689999999999999999999999 777777778887654 3444454 78999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~ 119 (128)
.+|++++|||++++++|+++ ..|+..+..
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~ 128 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQE 128 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 678877654
No 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=2.4e-21 Score=125.07 Aligned_cols=99 Identities=25% Similarity=0.466 Sum_probs=63.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.+. ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 79 (183)
T ss_dssp SEEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence 4579999999999999999999998 666666777777553 4566777 78999999999999888889999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 108 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEE 108 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988865
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=1.4e-20 Score=124.25 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=83.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+..++..+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 79 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYR 79 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGT
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcc
Confidence 35789999999999999999999998 667667777877554 3445555 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++|++++|||++++++++++. .|+..+..
T Consensus 80 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 109 (212)
T 2j0v_A 80 GADIFVLAFSLISKASYENVLKKWMPELRR 109 (212)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 78887754
No 64
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=121.56 Aligned_cols=99 Identities=27% Similarity=0.469 Sum_probs=80.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||++|.+.+...+..+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 4678999999999999999999998 66655666777654 45566666 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++.+++.+..|+..+..
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~ 126 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDK 126 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877654
No 65
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=133.50 Aligned_cols=107 Identities=32% Similarity=0.676 Sum_probs=87.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 93 (128)
.++.+||+++|.+++|||||++++.. +.+... .+|.+.....+...+..+.+||++|++.+..++..+++.+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~------~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS------SCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC------CCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 35678999999999999999999987 554433 47888888888888999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCcccccCC
Q 033075 94 AVVFVIDAACPSRFEDSKTALGKFFGMRICKERH 127 (128)
Q Consensus 94 ~~v~v~d~~~~~s~~~~~~~l~~~~~~~~~~~~~ 127 (128)
++++|||++++++|+.+..|+.+++......+.|
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 268 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence 9999999999999999999999998876544433
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=2.9e-20 Score=122.27 Aligned_cols=99 Identities=27% Similarity=0.503 Sum_probs=86.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||+||.+.+...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 4579999999999999999999998 66666667777654 34566666 58999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+..+..
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~ 108 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDR 108 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 67
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=122.82 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=78.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|.+.+..++..+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT------NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence 45789999999999999999999998 666667777777654 3556666 57889999999999998899999
Q ss_pred ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++|++++|||++++++++++. .|+..+..
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 120 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 68877754
No 68
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=1.3e-20 Score=119.84 Aligned_cols=99 Identities=24% Similarity=0.451 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..+||+++|++++|||||++++.. +.+...+.++.+.+ ...+.+++ ..+.+||+||.+.+...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred CceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc
Confidence 468999999999999999999998 66655666666644 34555555 689999999999999888999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|+|++++++++.+..|+..+...
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 104 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVNEH 104 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887653
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=4e-20 Score=119.28 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|++|+|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..+++.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 76 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC
Confidence 4679999999999999999999998 666666677776543 3455666 667899999999999998899999
Q ss_pred cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+|++++|||++++.+++++. .|+..+..
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 105 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVRH 105 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999997 67777654
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=1.8e-20 Score=120.37 Aligned_cols=101 Identities=27% Similarity=0.449 Sum_probs=73.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEEC-C--eEEEEEeCCCCccchhhHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS-N--SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~-~--~~~~~~D~~g~~~~~~~~~~~ 88 (128)
..+.+||+++|++|+|||||++++.. +.+...+.++.+.+ ...+.++ + ..+.+||+||++.+...+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 78 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence 35789999999999999999999998 66666666776643 4455555 2 689999999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
++.+|++++|||++++.+++.+..|+.++...
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 110 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVH 110 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887653
No 71
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=121.85 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=78.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC--eEEEEEeCCCCccchh-hHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~ 90 (128)
....+||+++|++|||||||++++.... ..+......+.......+.+++ ..+.+||++|++.+.. ++..+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQ----GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEE----CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhcc----CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 3568999999999999999999997511 1111111122333345566776 6788999999988765 7788899
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++|+++..|+.++...
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~ 125 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAG 125 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988653
No 72
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.9e-20 Score=122.04 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 4679999999999999999999998 666667777776554 3555665 789999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+|++++|||++++++|+++. .|+..+..
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKE 118 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 68877765
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=2.7e-20 Score=122.58 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=81.2
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~ 88 (128)
....+.+||+++|++|+|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||.+.+...+..+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 98 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHH------SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHh------CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 3456889999999999999999999998 666667777776543 3445555 567799999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++.+|++++|||++++.+++++. .|+..+..
T Consensus 99 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 130 (204)
T 4gzl_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130 (204)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 67777654
No 74
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=5.8e-20 Score=118.06 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=75.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|+++||||||++++.. +.+.. +.+|.+... ..+.+++ ..+.+||++|++. ..++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~ 72 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGW 72 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHh
Confidence 4689999999999999999999998 66655 567777543 4556666 6789999999886 467799
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
+|++++|||++++++++.+..|+..+
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i 98 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQL 98 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99999999999999999999975544
No 75
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.7e-20 Score=118.46 Aligned_cols=99 Identities=30% Similarity=0.573 Sum_probs=76.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CCCcCCcceEEE--EEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
.+.+||+++|++++|||||++++.. +.+. ..+.++.+.+.. .+.+++ ..+.+||+||++.+...+..++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 81 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYY 81 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHc
Confidence 5789999999999999999999998 5553 345677776543 345666 5899999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+.+|++++|+|++++.+++.+..|+..+..
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 111 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIHE 111 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765
No 76
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=4.5e-20 Score=119.86 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=85.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+... ..+...+ ..+.+||++|.+.+...+..+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 4579999999999999999999998 666666677777554 4445554 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 122 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKT 122 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=4.3e-20 Score=119.86 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=74.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|.+|||||||++++.. +.+...+.++.+... ..+.+++ ..+.+||++|.+.+...+..+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 91 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CT
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHc------CCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhC
Confidence 34679999999999999999999998 555556666666543 4555666 56999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++.+++.+..|+..+...
T Consensus 92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 121 (190)
T 3con_A 92 TGEGFLCVFAINNSKSFADINLYREQIKRV 121 (190)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887653
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=116.18 Aligned_cols=100 Identities=20% Similarity=0.157 Sum_probs=74.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCcc--chhhHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPG--LRSIWEKY 88 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~ 88 (128)
.+.+||+++|++++|||||++++.. ..+... .++.+.+ ...+.+++ ..+.+||++|.+. +..+...+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 74 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAG------KQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESC 74 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC------C------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHT
T ss_pred ceEEEEEEECCCCccHHHHHHHHhc------CCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhh
Confidence 4678999999999999999999997 433322 2334432 45566666 5789999999887 56677788
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
++.+|++++|||++++++|+.+..|+.++....
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 107 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTH 107 (175)
T ss_dssp TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999887653
No 79
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.8e-20 Score=123.34 Aligned_cols=99 Identities=24% Similarity=0.408 Sum_probs=81.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||++|++.+..++..+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 84 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR 84 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc
Confidence 4679999999999999999999998 66666666776643 45566777 68999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++.+++.+..|+.++..
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~ 113 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRE 113 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988864
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=6.4e-20 Score=120.91 Aligned_cols=99 Identities=24% Similarity=0.463 Sum_probs=84.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...++|+++|++++|||||++++.. ..+...+.++.+.. ...+.+++ ..+.+||+||.+.+...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 4679999999999999999999998 66666666776644 45666777 68999999999999988899999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++.+++.+..|+..+..
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 120 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNE 120 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6.6e-20 Score=119.60 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=84.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
...++|+++|+++||||||++++.. +.+...+.++.+.... .+..++ ..+.+||+||.+.+...+..+++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 79 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhcc
Confidence 5679999999999999999999998 6666677777776543 334444 679999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+|++++|||++++++++.+..|+..+..
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 107 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLIVQ 107 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888766644
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=3.8e-20 Score=121.48 Aligned_cols=101 Identities=25% Similarity=0.443 Sum_probs=85.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
....+||+++|++++|||||++++.. ..+...+.++.+.+. ..+.+++ ..+.+||+||++.+...+..++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence 35789999999999999999999998 666667777777554 3444555 6899999999999988888999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+.+|++++|||++++.+++.+..|+.++...
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887643
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6.9e-21 Score=123.99 Aligned_cols=99 Identities=25% Similarity=0.406 Sum_probs=84.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+...+ ..+.+||++|++.+..++..+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYAD------DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR 94 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHH------HTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhc------CCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence 4678999999999999999999998 66655666666643 34444443 88999999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+..+..
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKT 123 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 84
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=4.4e-20 Score=117.51 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC--CcCCcceEEEEEEECC--eEEEEEeCCCCccchh-hHHHhhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYEE 91 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~ 91 (128)
.+||+++|++++|||||++++.. ...... ..++.......+.+++ ..+.+||++|.+.+.. ++..+++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 75 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG------LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT 75 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC------C------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHh------ccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc
Confidence 57999999999999999999986 222222 2233444455666776 6788999999998876 67778899
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHhcCcc
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~~ 122 (128)
+|++++|||++++++++.+..|+.++.....
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 106 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHST
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999876543
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=6e-20 Score=120.56 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
...+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 96 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD 96 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence 4678999999999999999999998 666666777776553 4456666 589999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDS-KTALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~-~~~l~~~~~ 119 (128)
+|++++|||++++++++.+ ..|+..+..
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 125 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKH 125 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 567766543
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=5.7e-21 Score=125.32 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=61.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCCCCcCCcce--EEEEEEECC----eEEEEEeCCCCccchhhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDRIVPTVGL--NIGRIEVSN----SKLVFWDLGGQPGLRSIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~~~~~~t~~~--~~~~~~~~~----~~~~~~D~~g~~~~~~~~~ 86 (128)
...+||+++|++++|||||++++.. + .+...+.+|.+. ....+.+++ ..+.+||+||.+.+...+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 91 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS------KGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQIS 91 (208)
T ss_dssp EEEEEEEEC----------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh------CCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHH
Confidence 4678999999999999999999998 5 555666777763 345666664 5899999999999999999
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+++.+|++++|||++++.+++.+..|+..+...
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 125 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988753
No 87
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=122.21 Aligned_cols=99 Identities=23% Similarity=0.393 Sum_probs=65.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 105 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD 105 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc
Confidence 4679999999999999999999998 666666667776543 4455666 579999999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+|++++|||++++++|+++. .|+..+..
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 134 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 68777654
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=122.69 Aligned_cols=99 Identities=24% Similarity=0.377 Sum_probs=77.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+.. ...+.+++ ..+.+||++|.+.+...+..+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 4679999999999999999999998 55555666666643 45566666 78999999999988888899999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+..|+.++..
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 125 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDART 125 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=8.5e-20 Score=120.31 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=79.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
....+||+++|++++|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 95 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSK------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP 95 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHH------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCT
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhc------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcC
Confidence 45789999999999999999999998 666666677776554 4456666 67999999999999999899999
Q ss_pred ccCEEEEEEECCCcccHHHH-HHHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDS-KTALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~-~~~l~~~~~ 119 (128)
.+|++++|||++++++++.+ ..|+..+..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 125 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKH 125 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 567776654
No 90
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=1.2e-20 Score=121.41 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=71.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEE-EEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.+||+++|++++|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||+||++.+...+..+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTS------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYR 78 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHH------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcc
Confidence 35789999999999999999999998 6666666666654321 222333 56779999999999999999999
Q ss_pred ccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 91 EAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++|++++|||++++++++++. .|+..+..
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 108 (182)
T 3bwd_D 79 GADVFILAFSLISKASYENVSKKWIPELKH 108 (182)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 68777654
No 91
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=2.3e-19 Score=125.18 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=81.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC-CCCCcCCcceEEEEEEE-CCeEEEEEeCCCCccc-----hhhHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKY 88 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~ 88 (128)
..+||+++|++|||||||++++..... .+ ...+.+|++.....+.+ ++..+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~----~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYS----AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCC----TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC----CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 578999999999999999999987110 11 12466888888887776 4589999999999988 6788889
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
++++|++++|||++++++++++..|...+
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l 106 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKAL 106 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHH
Confidence 99999999999999999999997765444
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=1.5e-20 Score=125.04 Aligned_cols=101 Identities=19% Similarity=0.425 Sum_probs=85.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEE--EEECC--eEEEEEeCCCCccchhhHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
....+||+++|.+|||||||+++++. +.+...+.++.+.+... ..+.+ ..+.+||++|++.+...+..++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHH------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH
Confidence 35789999999999999999999777 55555677788766443 33444 7899999999999999999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
+++|++++|||++++.+++.+..|+..+...
T Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 116 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116 (221)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988763
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=5.3e-20 Score=119.64 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=76.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-----------CcCCcceEEEEEE---ECC--eEEEEEeCC
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-----------IVPTVGLNIGRIE---VSN--SKLVFWDLG 76 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-----------~~~t~~~~~~~~~---~~~--~~~~~~D~~ 76 (128)
.....+||+++|+++||||||++.+.. .+... +.+|.+.+..... +++ ..+.+||++
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-------KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-------TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-------hccccccccccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 345789999999999999999976665 22222 3345555433222 222 689999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECC------CcccHHHHHHHHHHH
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAA------CPSRFEDSKTALGKF 117 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~------~~~s~~~~~~~l~~~ 117 (128)
|++.+...+..+++++|++++|||++ +.++|+++..|+.++
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 567888888999887
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=4.4e-20 Score=119.70 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE-------CCeEEEEEeCCCCccchhhHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------SNSKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
.+||+++|++|||||||++++.. .. ..+...+.+|.+.+.....+ ....+.+||++|++.+..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~--~~--~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK--TK--KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC--C-------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CC--CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 57999999999999999999987 11 13344566788876554432 247899999999999988889999
Q ss_pred hccCEEEEEEECCCc-ccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACP-SRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~-~s~~~~~~~l~~~~~ 119 (128)
++++++++|||++++ ++++.+..|+.++..
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~ 108 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKA 108 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence 999999999999997 589999999998764
No 95
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=4.6e-20 Score=122.23 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=84.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEE--C-C--eEEEEEeCCCCccchhhHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S-N--SKLVFWDLGGQPGLRSIWEKYY 89 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~ 89 (128)
...+||+++|.+|||||||++++.. +.+...+.++.+........ . + ..+.+||++|.+.+...+..++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY 82 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh
Confidence 5689999999999999999999998 66666777888766544433 2 2 6799999999999998999999
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+.+|++++|||++++.+++.+..|+..+..
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (218)
T 4djt_A 83 IGASGAILFFDVTSRITCQNLARWVKEFQA 112 (218)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888764
No 96
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.5e-18 Score=115.30 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=77.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcce--EEEEEEECC--eEEEEEeCCCCcc-chhhHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY 89 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~ 89 (128)
...+||+++|+++||||||++++.. .+ ..+...+ ++.+. ....+.+++ ..+.+||++|.+. +..+...++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~--~~--~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~ 109 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG--VH--DSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 109 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC--CC--CTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh--CC--CCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence 4579999999999999999999985 11 1222222 22332 335566777 4678999999886 455667778
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhcCc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFGMR 121 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~~ 121 (128)
+.++++++|||++++++|+++..|+.++....
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~ 141 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRAR 141 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999998887543
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=1.1e-18 Score=115.25 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=77.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---CeEEEEEeCCCCccchh-hHHHhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYY 89 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~ 89 (128)
+++.+||+++|++++|||||++++.. +.+...+.+ .......+.++ +..+.+||+||++.+.. ++..++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLT------GQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHH------SCCCCBCCC-CSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCcccccCC-cceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence 35789999999999999999999998 666655543 44455557776 57899999999999988 788899
Q ss_pred hccCEEEEEEECCCcc-cHHHHHHHHHHHh
Q 033075 90 EEAHAVVFVIDAACPS-RFEDSKTALGKFF 118 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~-s~~~~~~~l~~~~ 118 (128)
+.+|++++|||+++.. ++..+..|+.+++
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 106 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQVL 106 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHHH
Confidence 9999999999999853 5777777666654
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.79 E-value=1.7e-20 Score=122.88 Aligned_cols=100 Identities=29% Similarity=0.502 Sum_probs=82.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCccchhhHHHhhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
...+||+++|++++|||||++++.. +.+...+.++.+ .....+.+++ ..+.+||++|++.+...+..+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 104 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 104 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence 4579999999999999999999987 666656556655 3445666777 67999999999999988889999
Q ss_pred ccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 91 EAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+|++++|||++++++++.+..|+..+...
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 134 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134 (199)
T ss_dssp CCSEEEECC-CCCSHHHHHHHHHHHHHHSC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=2.1e-18 Score=112.98 Aligned_cols=97 Identities=27% Similarity=0.391 Sum_probs=80.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..++++++|++|||||||++++.. ..+...+.++.+.. ...+.+++ ..+.+||++|.+.++..+..+++.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence 468999999999999999999998 66666666776644 45677777 567899999999988888888899
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
++++++|+|+++..+++++..|+.++.
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELR 104 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999988987764
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.78 E-value=1.6e-18 Score=113.28 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=72.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcc--eEEEEEEECC--eEEEEEeCCCCcc-chhhHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY 89 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~ 89 (128)
...+||+++|++|||||||++++.... ..+...+. +.+ .....+.+++ ..+.+||++|.+. ++.+...++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~ 78 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVH----DSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 78 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHS----CCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCc----CCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhc
Confidence 457999999999999999999998611 12222222 233 2335566777 4678999999776 455667788
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+.+|++++|||++++++|+.+..|+..+..
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~ 108 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRR 108 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887754
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=4.3e-18 Score=111.05 Aligned_cols=97 Identities=26% Similarity=0.387 Sum_probs=82.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCe--EEEEEeCCCCccchhhHHHhhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
..++++++|++|||||||++++.. ..++..+.+|.+.. ...+.+++. .+.+||++|.+++...+..+++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 101 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence 468999999999999999999998 66666777887754 356677774 56679999999988888889999
Q ss_pred cCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 92 AHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
++++++|+|+++..+++++..|+.++.
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~ 128 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELR 128 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999988887664
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.64 E-value=2e-20 Score=122.90 Aligned_cols=102 Identities=22% Similarity=0.355 Sum_probs=82.4
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~ 88 (128)
+...+.+||+++|++|+|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 98 (204)
Confidence 3446889999999999999999999998 656556666665433 2333444 567799999999999999999
Q ss_pred hhccCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
++++|++++|||++++++++++. .|+..+..
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~ 130 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130 (204)
Confidence 99999999999999999999987 67766654
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=1.1e-18 Score=114.16 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=70.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEE---CCeEEEEEeCCCCccchhhH---
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEV---SNSKLVFWDLGGQPGLRSIW--- 85 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~---~~~~~~~~D~~g~~~~~~~~--- 85 (128)
..+.+||+++|+++||||||++++.+ . +........+.. .....+ ....+.+||++|++.|....
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH------K-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS------C-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh------c-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 46789999999999999999998775 1 211211111111 122222 22889999999999987766
Q ss_pred HHhhhccCEEEEEEECCCc--ccHHHHHHHHHHHh
Q 033075 86 EKYYEEAHAVVFVIDAACP--SRFEDSKTALGKFF 118 (128)
Q Consensus 86 ~~~~~~~~~~v~v~d~~~~--~s~~~~~~~l~~~~ 118 (128)
..+++++|++++|||++++ ++++.+..|+.++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~ 124 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY 124 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHH
Confidence 8899999999999999997 67778888888763
No 104
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=4e-18 Score=119.05 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=83.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECC--eEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
+..++|+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|.+.+...+..+++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 226 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred cceeEEEEECCCCCChHHHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence 4679999999999999999999998 666667777777554 3455666 456699999999999999999999
Q ss_pred cCEEEEEEECCCcccHHHHH-HHHHHHhc
Q 033075 92 AHAVVFVIDAACPSRFEDSK-TALGKFFG 119 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~-~~l~~~~~ 119 (128)
+|++++|||++++.+++.+. .|+..+..
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 255 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVRH 255 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987 57766654
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.76 E-value=1.4e-18 Score=121.81 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=64.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchh---hHHHhhhcc
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEA 92 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~ 92 (128)
||+++|++|||||||++++.. +.++. .+.+|+|.+...+. ...++++||++|+++|+. .+..|++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~------~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH------NMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS------CCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHc------CCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCC
Confidence 689999999999999998776 32222 35688888766542 238899999999999964 468899999
Q ss_pred CEEEEEEECCCc
Q 033075 93 HAVVFVIDAACP 104 (128)
Q Consensus 93 ~~~v~v~d~~~~ 104 (128)
+++++|||++++
T Consensus 74 ~~~IlV~Ditd~ 85 (331)
T 3r7w_B 74 GALVYVIDSQDE 85 (331)
T ss_dssp SEEEEECCCSSC
T ss_pred CEEEEEEECCch
Confidence 999999999998
No 106
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=9.7e-19 Score=115.84 Aligned_cols=96 Identities=20% Similarity=0.347 Sum_probs=77.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (128)
..+.++|+++|++|+|||||++++.. ..+.. .+.++.+. .+....+.+||+||++.++..+..+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHH------SSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc------CCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHH
Confidence 35689999999999999999999998 44332 12232221 124478999999999999998888888
Q ss_pred c----cCEEEEEEECC-CcccHHHHHHHHHHHhcC
Q 033075 91 E----AHAVVFVIDAA-CPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 91 ~----~~~~v~v~d~~-~~~s~~~~~~~l~~~~~~ 120 (128)
. +|++++|+|++ +++++..+..|+.+++..
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~ 112 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 112 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhc
Confidence 7 89999999999 889999999999988754
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=113.43 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=73.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---CCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.++|+++|++|||||||++++.. ..+.. ...++.+ ..+.+..+.+||+||...+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~------~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH------SSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc------CCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHh
Confidence 5678999999999999999999998 33322 1122221 12255789999999999988888877776
Q ss_pred ----cCEEEEEEECC-CcccHHHHHHHHHHHhcC
Q 033075 92 ----AHAVVFVIDAA-CPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 92 ----~~~~v~v~d~~-~~~s~~~~~~~l~~~~~~ 120 (128)
+|++++|+|++ +++++..+..|+.++...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 148 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 148 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhh
Confidence 89999999999 899999999999888754
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=4.9e-18 Score=108.78 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=70.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCc--ceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV--GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.++.++|+++|+++||||||++++.. +.+...+.++. ......+.+++..+.+||+||++.+...+..+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH------SKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQV 78 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT------TCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhh
Confidence 35789999999999999999999998 44444433333 23345677788999999999999998888888899
Q ss_pred cCEEEEEEECCCccc
Q 033075 92 AHAVVFVIDAACPSR 106 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s 106 (128)
+|++++|+|++++..
T Consensus 79 ~d~~i~v~d~~~~~~ 93 (178)
T 2lkc_A 79 TDIVILVVAADDGVM 93 (178)
T ss_dssp CCEEEEEEETTCCCC
T ss_pred CCEEEEEEECCCCCc
Confidence 999999999988543
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=1.4e-16 Score=101.39 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=68.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~ 87 (128)
+.++++++|++|+|||||++++.. ..+.....+ +.......+.+++..+.+||++|...+. .+...
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC------CSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhC------CCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHH
Confidence 358999999999999999999987 332222223 2333445667778999999999988764 34456
Q ss_pred hhh--ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 88 YYE--EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 88 ~~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
+++ +++++++|+|+++.+ ....|+.++..
T Consensus 76 ~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~ 106 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATALE---RNLYLTLQLME 106 (165)
T ss_dssp HHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEecCCchh---HhHHHHHHHHh
Confidence 665 899999999998754 44457666643
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.73 E-value=6.7e-17 Score=103.76 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=70.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CC-CCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------- 84 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------- 84 (128)
++..||+++|++|+|||||++++.. ... .. ....+.+.....+.+++..+.+||++|.+.+...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 75 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAG------REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIE 75 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHT------SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHH
Confidence 3568999999999999999999987 221 11 2223444555677788888999999998653211
Q ss_pred -HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 85 -WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 85 -~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
...+++.+|++++|+|++++.+++ ...|+..+..
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~ 110 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIA 110 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHH
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH
Confidence 124578999999999999988876 3467766654
No 111
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.72 E-value=9.2e-17 Score=113.19 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=66.6
Q ss_pred cCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCcc
Q 033075 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 53 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~ 122 (128)
.+|+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||++ +.+++++...|+..+++...
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45688888888888899999999999999999999999999999999999 78899999999999998766
Q ss_pred cccCC
Q 033075 123 CKERH 127 (128)
Q Consensus 123 ~~~~~ 127 (128)
..+.|
T Consensus 226 ~~~~p 230 (340)
T 4fid_A 226 LKGAV 230 (340)
T ss_dssp GTTSE
T ss_pred cCCCe
Confidence 55443
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=4.3e-16 Score=100.63 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=72.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~ 86 (128)
.+.++|+++|++|||||||++++.. ..+.....+ +.......+.+++..+.+||+||...+. .++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR 78 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHH
Confidence 3678999999999999999999987 322222223 3334456677788999999999988774 4556
Q ss_pred Hhhh--ccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 87 KYYE--EAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 87 ~~~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+++ .++++++|+|.++ ++....|+.++..
T Consensus 79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~ 110 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLME 110 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT
T ss_pred HHHhccCCCEEEEEecchh---HHHHHHHHHHHHh
Confidence 6665 4999999999875 6667778877765
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=3.6e-16 Score=98.44 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC---CCCcCCcceEEEEEEECCeEEEEEeCCCCcc-------chhhHHH
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEK 87 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~ 87 (128)
.||+++|++|+|||||++++.. ..+. .....+.......+..++..+.+||+||... +...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH------CCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHH
Confidence 5899999999999999999998 3211 1122233444566777889999999999876 3456677
Q ss_pred hhhccCEEEEEEECCCcccH
Q 033075 88 YYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~~s~ 107 (128)
+++.+|++++|+|++++.+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~ 95 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQ 95 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCH
T ss_pred HHHhCCEEEEEEECCCcccH
Confidence 88999999999999986544
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.67 E-value=1e-15 Score=102.14 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=70.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CCCcCCcceEEEEEEECCeEEEEEeCCCC------ccc---hh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RS 83 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~ 83 (128)
.+.++|+++|++|||||||++++.. +.+. .....|...........+..+.+||+||. +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR------ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT------TCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 4679999999999999999999988 3332 11123444555566677899999999998 331 12
Q ss_pred hHHHhhhccCEEEEEEECCCcccHH--HHHHHHHHHhcC
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFE--DSKTALGKFFGM 120 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~--~~~~~l~~~~~~ 120 (128)
.+..++..+|++++|||++++.+++ ....|+..+...
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~ 139 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV 139 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh
Confidence 2334568889999999999988764 334677776553
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.67 E-value=4.3e-16 Score=101.19 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCC----------Cccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG----------QPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~~~ 81 (128)
....++|+++|++|+|||||++++.. ..+...+.++.+.. ...... +.++.+||+|| ++.+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLIN------RKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHT------C-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHH
Confidence 45689999999999999999999998 44333334444322 122233 34799999999 6677
Q ss_pred hhhHHHhhhcc---CEEEEEEECCCcccHHHH
Q 033075 82 RSIWEKYYEEA---HAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 82 ~~~~~~~~~~~---~~~v~v~d~~~~~s~~~~ 110 (128)
...+..+++.+ |++++|+|++++.++...
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDV 124 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH
Confidence 77788888877 999999999998887764
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.67 E-value=5.2e-17 Score=104.97 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC-----------CccchhhHH
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWE 86 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~ 86 (128)
+||+++|++|+|||||++++.. +.+...+.++.......+.+. .+.+||+|| ++.+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC------cCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 6899999999999999999998 555444445444434444444 789999999 567777888
Q ss_pred Hhhhc-cCEEEEEEECCCcccHHHH-HHHHH
Q 033075 87 KYYEE-AHAVVFVIDAACPSRFEDS-KTALG 115 (128)
Q Consensus 87 ~~~~~-~~~~v~v~d~~~~~s~~~~-~~~l~ 115 (128)
.+++. ++++++++++.|.++++++ ..|..
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence 88887 8888888888888888877 55554
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.66 E-value=4.4e-15 Score=103.58 Aligned_cols=103 Identities=24% Similarity=0.255 Sum_probs=77.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC-CeEEEEEeCCCCccch----------
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR---------- 82 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~---------- 82 (128)
..+.-.|+++|.+|||||||+++++. .+. .........|..........+ +.++.+|||||.....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g--~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG--TKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT--SCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC--CCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 35678999999999999999999998 221 011122223444444566677 8999999999986543
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.....+++.+|++++|+|+++..++.....|+..+..
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~ 120 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP 120 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence 5667788999999999999999999888777877665
No 118
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=2.4e-15 Score=101.10 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=63.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC----cCCcceEEEEEEECCeEEEEEeCCCCc----------
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQP---------- 79 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~---------- 79 (128)
....++|+++|.+|+|||||+++++. ....... ..|.......+.+++..+.+|||||..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILG------RKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHT------SCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcC------CCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH
Confidence 45789999999999999999999998 3332222 234445556777888999999999943
Q ss_pred -cchhhHHHhhhccCEEEEEEECCCccc
Q 033075 80 -GLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 80 -~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
.+...+..+++.+|++++|+|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH
Confidence 344444555677899999999986544
No 119
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.66 E-value=1.8e-15 Score=106.15 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=65.1
Q ss_pred cCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCcc
Q 033075 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRI 122 (128)
Q Consensus 53 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~ 122 (128)
.+|+|+....+.+++..+++||++|++.++..|..|+++++++++|||++ +.++++++..|++++.++..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34678888888889999999999999999999999999999999999655 77889999999999998766
Q ss_pred cccCC
Q 033075 123 CKERH 127 (128)
Q Consensus 123 ~~~~~ 127 (128)
..+.|
T Consensus 232 ~~~~~ 236 (327)
T 3ohm_A 232 FQNSS 236 (327)
T ss_dssp GTTCE
T ss_pred cCCce
Confidence 55443
No 120
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=5e-15 Score=100.35 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=66.6
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCC--------cc
Q 033075 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PG 80 (128)
Q Consensus 9 ~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~ 80 (128)
+......+.++|+++|.+|+|||||+++++. .+...........|..........++..+.+|||||. +.
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l~~--~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~ 90 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSILG--QRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDP 90 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHHHT--SCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHST
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHHhC--CCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHH
Confidence 3344456789999999999999999999997 2110000011123445555677788899999999996 33
Q ss_pred chhhHHHhh----hccCEEEEEEECCCcccH-HHHHHHHHHHh
Q 033075 81 LRSIWEKYY----EEAHAVVFVIDAACPSRF-EDSKTALGKFF 118 (128)
Q Consensus 81 ~~~~~~~~~----~~~~~~v~v~d~~~~~s~-~~~~~~l~~~~ 118 (128)
+......++ +.+|++++|+|+++.... ..+.+++.++.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~ 133 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF 133 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 333333333 899999999999863322 23445565554
No 121
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=5.2e-15 Score=100.94 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=63.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCC-CcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhh---
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE--- 90 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~--- 90 (128)
.+.++|+++|.+|+|||||+++++. .+. ..... ...|.......+.+++..+.+|||||...+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~--~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG--EQV--VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT--SCC--SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC--CCC--cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHH
Confidence 3689999999999999999999998 211 01122 222444555667788899999999998877544333333
Q ss_pred ------ccCEEEEEEECCCcc
Q 033075 91 ------EAHAVVFVIDAACPS 105 (128)
Q Consensus 91 ------~~~~~v~v~d~~~~~ 105 (128)
.+|++++|+|+++..
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSC
T ss_pred HHHhcCCCCEEEEEEcCCCCC
Confidence 789999999987654
No 122
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.64 E-value=6e-15 Score=106.04 Aligned_cols=73 Identities=19% Similarity=0.462 Sum_probs=64.2
Q ss_pred CcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCcccc
Q 033075 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRICK 124 (128)
Q Consensus 55 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~~ 124 (128)
|+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||+++ .++|+++..|+.++.+.....
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5666666778888999999999999999999999999999999999999 899999999999999875544
Q ss_pred cCC
Q 033075 125 ERH 127 (128)
Q Consensus 125 ~~~ 127 (128)
+.|
T Consensus 284 ~~p 286 (402)
T 1azs_C 284 TIS 286 (402)
T ss_dssp SCC
T ss_pred CCe
Confidence 443
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.64 E-value=9.6e-16 Score=104.44 Aligned_cols=93 Identities=26% Similarity=0.218 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEECCeEEEEEeCCCCccchh----------hH
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW 85 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~ 85 (128)
.+|+++|.+|+|||||++++.. ....... ..|.......+.+++..+.+||+||...+.. +.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~ 75 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA 75 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH
Confidence 4899999999999999999987 2211111 2233444567778889999999999876653 55
Q ss_pred HHhh--hccCEEEEEEECCCcccHHHHHHHHHH
Q 033075 86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALGK 116 (128)
Q Consensus 86 ~~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~ 116 (128)
..++ +.+|++++|+|+++.++...+..++.+
T Consensus 76 ~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~ 108 (256)
T 3iby_A 76 AQSVIDLEYDCIINVIDACHLERHLYLTSQLFE 108 (256)
T ss_dssp HHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred HHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH
Confidence 5666 889999999999997766665555543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.63 E-value=1.4e-14 Score=100.84 Aligned_cols=93 Identities=25% Similarity=0.249 Sum_probs=66.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC---CCCcCCcceEEEEEEECCeEEEEEeCCCCcc--------chhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSI 84 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~ 84 (128)
+..+|+++|.+|||||||+++++. .... .....|..........++.++.+|||||... +...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~ 79 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLG------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQE 79 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHH
Confidence 456799999999999999999998 2221 1112233322334556779999999999876 4456
Q ss_pred HHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~ 116 (128)
...+++.+|++++|+|++++.+.. ..|+.+
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~ 109 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPE--DELVAR 109 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHH--HHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCCCChH--HHHHHH
Confidence 667889999999999999875544 345433
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=8.3e-16 Score=114.18 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=70.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE--------EC----CeEEEEEeCCCCccch
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------VS----NSKLVFWDLGGQPGLR 82 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~~----~~~~~~~D~~g~~~~~ 82 (128)
...+||+++|.+|||||||++++.. ..+...+.+|.+.++.... +. +..+.+||++|++.+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~------~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~ 112 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIG------ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH 112 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH
Confidence 4679999999999999999999998 6666677788887765431 22 3789999999999999
Q ss_pred hhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 83 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.....+++.+|++++|+|+++.+. +..|+.++..
T Consensus 113 ~~~~~~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~ 146 (535)
T 3dpu_A 113 ASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHIEK 146 (535)
T ss_dssp TTCHHHHHSSEEEEEEECGGGGGG---HHHHHHHHHH
T ss_pred HHHHHHccCCcEEEEEEeCCCchh---HHHHHHHHHH
Confidence 999999999999999999987644 4556666544
No 126
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.63 E-value=4.1e-17 Score=111.01 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=69.0
Q ss_pred cceeEEEEEcCC---------CCCHHHHHHHHHhhccCCCCCCCCCCcCCc-ceEE--EE----------------EEEC
Q 033075 15 KTEFHVLILGID---------KAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNI--GR----------------IEVS 66 (128)
Q Consensus 15 ~~~~ki~l~G~~---------~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~-~~~~--~~----------------~~~~ 66 (128)
.+.+||+++|++ +||||||++++... .. +.+...+.++. +... .. +.-.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~--~~-~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP--SA-DEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC--ST-TTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc--cC-CccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 567999999999 99999999999971 00 11222333332 1110 00 1112
Q ss_pred CeEEEEEe-----------------------CCCCccchhhHHHhhh---------------------ccCEEEEEEECC
Q 033075 67 NSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVIDAA 102 (128)
Q Consensus 67 ~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~v~v~d~~ 102 (128)
...+.+|| ++|++.+..++..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 26799999 5566666666666666 799999999999
Q ss_pred Cc--ccHHHHHHHHHHHhcC
Q 033075 103 CP--SRFEDSKTALGKFFGM 120 (128)
Q Consensus 103 ~~--~s~~~~~~~l~~~~~~ 120 (128)
++ ++|+.+..|+.++...
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~ 193 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQ 193 (255)
T ss_dssp C----CHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHH
Confidence 98 9999999999988654
No 127
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.62 E-value=1.6e-14 Score=98.17 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCCCc---CCcceEEEEEEECCeEEEEEeCCCCccch--------
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------- 82 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------- 82 (128)
.+.++|+++|.+|||||||+++++. .. +..... .|.......+.+++.++.+|||||...+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYK 93 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHH
Confidence 4679999999999999999999997 22 222222 34445556677888999999999976542
Q ss_pred ---hhHHHhhhccCEEEEEEECCCccc-HHHHHHHHHHHh
Q 033075 83 ---SIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALGKFF 118 (128)
Q Consensus 83 ---~~~~~~~~~~~~~v~v~d~~~~~s-~~~~~~~l~~~~ 118 (128)
.....+++.+|++++|+|+++... ...+..|+.++.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~ 133 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF 133 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 122336788999999999987332 234445666654
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.62 E-value=2.3e-15 Score=103.40 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=68.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCc--CCcceEEEEEEECCeEEEEEeCCCCccch----------h
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------S 83 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~ 83 (128)
++++|+++|.+|+|||||++++.. ........ .|.......+...+..+.+||+||...+. .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH
Confidence 468999999999999999999987 22211112 23344455667778899999999987765 2
Q ss_pred hHHHhh--hccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 84 IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 84 ~~~~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
....++ +.+|++++|+|+++.++...+..++.+.
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~ 111 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNLERNLYLTLQLLEL 111 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc
Confidence 233343 6999999999999876666555555543
No 129
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.62 E-value=1.6e-15 Score=107.59 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=64.9
Q ss_pred CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCccc
Q 033075 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRIC 123 (128)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~ 123 (128)
+|+|+....+.+++..+.+||++|++.++..|..|+++++++|+|||+++ .++++++..|+..+.+....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46777777888888999999999999999999999999999999999999 56799999999999987655
Q ss_pred ccCC
Q 033075 124 KERH 127 (128)
Q Consensus 124 ~~~~ 127 (128)
.+.|
T Consensus 259 ~~~p 262 (353)
T 1cip_A 259 TDTS 262 (353)
T ss_dssp TTSE
T ss_pred cCCc
Confidence 4433
No 130
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.62 E-value=4.8e-15 Score=101.07 Aligned_cols=96 Identities=23% Similarity=0.214 Sum_probs=68.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--cCCcceEEEEEEECCeEEEEEeCCCCccchh------hHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~ 86 (128)
.+.++|+++|++|+|||||++++.. ....... ..|.......+...+..+.+||+||...+.. +..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~ 76 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIAR 76 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHH
Confidence 4678999999999999999999987 2221111 1233334456666789999999999887653 334
Q ss_pred Hhh--hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 87 KYY--EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 87 ~~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.++ ..+|++++|+|+++.++.. .|+.++..
T Consensus 77 ~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~ 108 (258)
T 3a1s_A 77 DYLLKGDADLVILVADSVNPEQSL---YLLLEILE 108 (258)
T ss_dssp HHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT
T ss_pred HHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh
Confidence 555 5899999999999866543 45555544
No 131
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=3.8e-15 Score=102.31 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=63.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccch------hhHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKY 88 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~ 88 (128)
.++|+++|++|||||||++++.. ........+ |.......+.. +..+.+||+||...+. .+...+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g------~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG------HNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDY 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC------CCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHH
Confidence 57999999999999999999987 221111112 22222233333 6789999999998775 455666
Q ss_pred hh--ccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 89 YE--EAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 89 ~~--~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
+. .+|++++|+|+++.++. ..|+.++.
T Consensus 76 ~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~ 104 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNLERN---LYLTTQLI 104 (272)
T ss_dssp HHTTCCSEEEEEEEGGGHHHH---HHHHHHHH
T ss_pred HhcCCCCEEEEEecCCchHhH---HHHHHHHH
Confidence 65 69999999999886544 34555544
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.60 E-value=1e-14 Score=106.00 Aligned_cols=95 Identities=24% Similarity=0.210 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCcc---------chhhHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY 88 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 88 (128)
.+|+++|.+|||||||+|++...... ...+....|.+.....+.+++..+.+|||+|.+. +......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~---~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA---IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc---eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 37999999999999999999971100 0111222344444677888899999999999664 34566778
Q ss_pred hhccCEEEEEEECCCcccHH--HHHHHHH
Q 033075 89 YEEAHAVVFVIDAACPSRFE--DSKTALG 115 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~--~~~~~l~ 115 (128)
++++|++++|+|+++.-+.. .+..|+.
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999998865543 3444544
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.59 E-value=2.1e-15 Score=110.69 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=59.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhH--------H
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--------E 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~ 86 (128)
+..++|+++|.+|+|||||+|++.. .+. ....+....|.+.....+.+++..+.+|||||.+.+...+ .
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~--~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~ 307 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLG--QER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSR 307 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC--------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC--CCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHH
Confidence 3568999999999999999999987 110 0011122234444456778889999999999988765443 3
Q ss_pred HhhhccCEEEEEEECCCcccHH---HHHHHHHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFE---DSKTALGKF 117 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~---~~~~~l~~~ 117 (128)
.+++.+|++++|+|++++.+++ ....|+..+
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l 341 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH 341 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc
Confidence 3678999999999999988875 444555554
No 134
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=9.1e-15 Score=100.15 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=68.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEECCeEEEEEeCCCCccchh------hHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEK 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~ 87 (128)
+.++|+++|++|+|||||++++.. ..+.....+ +.......+.+++..+.+||+||...+.. ....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHH
Confidence 467999999999999999999987 322212223 33344556777889999999999887755 5556
Q ss_pred hh--hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 88 YY--EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 88 ~~--~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++ ..+|++++|+|+++.+ ....|+.++..
T Consensus 76 ~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~ 106 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCLM---RNLFLTLELFE 106 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH
T ss_pred hhhccCCcEEEEEecCCcch---hhHHHHHHHHh
Confidence 66 6899999999998853 33345555443
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.58 E-value=4.8e-15 Score=104.74 Aligned_cols=99 Identities=24% Similarity=0.319 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCc----cchhhHHHhh---
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSIWEKYY--- 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~----~~~~~~~~~~--- 89 (128)
.+|+++|.++||||||++++....... .+....|...+...+.+++ ..+.+||+||.. .+..+...++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i----~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI----ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE----SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc----ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 368999999999999999998721111 1223455556666777776 899999999943 3333444444
Q ss_pred hccCEEEEEEECCC---cccHHHHHHHHHHHhcC
Q 033075 90 EEAHAVVFVIDAAC---PSRFEDSKTALGKFFGM 120 (128)
Q Consensus 90 ~~~~~~v~v~d~~~---~~s~~~~~~~l~~~~~~ 120 (128)
+.++++++|+|+++ +++++.+..|+.++...
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~ 268 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEY 268 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHh
Confidence 46999999999999 88899998888888754
No 136
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.58 E-value=4.5e-15 Score=96.06 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=66.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE-EEEEECCeEEEEEeCCC----------Cccch
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGG----------QPGLR 82 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g----------~~~~~ 82 (128)
....+||+++|++|+|||||++++.. .. .....++.+... ......+.++.+||+|| .+.+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFN------RK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHT------SC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHc------Cc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHH
Confidence 45678999999999999999999998 32 122233333221 11112245688999999 56677
Q ss_pred hhHHHhhhcc---CEEEEEEECCCcccH--HHHHHHHHHH
Q 033075 83 SIWEKYYEEA---HAVVFVIDAACPSRF--EDSKTALGKF 117 (128)
Q Consensus 83 ~~~~~~~~~~---~~~v~v~d~~~~~s~--~~~~~~l~~~ 117 (128)
..+..+++.+ +++++|+|.++..+. ..+..|+...
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~ 132 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL 132 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc
Confidence 7777787776 999999999886443 3444566543
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=8.8e-15 Score=106.32 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc--------cchhhHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEKY 88 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~ 88 (128)
..+|+++|.+|||||||++++...... ...+....|.+.....+.+.+..+.+|||+|.. .+...+..+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce---eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 368999999999999999999871110 011111223333445556667899999999985 566777888
Q ss_pred hhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 89 YEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
++.+|++++|+|+++..++.. .|+.+++.
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~ 108 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAAD--EEVAKILY 108 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHH--HHHHHHHT
T ss_pred HHhCCEEEEEEeCCCCCCHHH--HHHHHHHH
Confidence 999999999999998777654 34555443
No 138
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.55 E-value=1.9e-14 Score=95.36 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=61.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE-ECCeEEEEEeCCCC----------ccch
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLR 82 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 82 (128)
....++|+++|.+|+|||||+++++.... . .........|.......+. ..+..+.+||+||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR-L-AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSS-S-SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCc-c-eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 35678999999999999999999998110 0 0111111223333333333 33588999999994 3445
Q ss_pred hhHHHhhhc---cCEEEEEEECCCccc
Q 033075 83 SIWEKYYEE---AHAVVFVIDAACPSR 106 (128)
Q Consensus 83 ~~~~~~~~~---~~~~v~v~d~~~~~s 106 (128)
.....+++. +|++++|+|+++.-+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 566677776 778999999998644
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.55 E-value=1.2e-14 Score=106.74 Aligned_cols=92 Identities=25% Similarity=0.278 Sum_probs=69.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-cch--------hhHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE 86 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~ 86 (128)
..++|+++|.+|+|||||+|++... +. ....+....|.+.....+.+++..+.+|||+|.. .+. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~--~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNE--DR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHH--TB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCC--CC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence 3489999999999999999999982 11 0111223345555567788889999999999987 543 2335
Q ss_pred HhhhccCEEEEEEECCCcccHHHH
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
.+++.+|++++|+|++++.+++..
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~ 342 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDR 342 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHH
T ss_pred HHhhcccEEEEEecCCCCCCHHHH
Confidence 678999999999999998887664
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=1e-13 Score=94.90 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=63.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh-------HHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------WEKY 88 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~ 88 (128)
+.++|+++|.+|+|||||+++++. .+.. ........+.......+...+..+.+|||||...+... +..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~--~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG--ERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT--SCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC--CCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 589999999999999999999997 2110 00111122223333455667799999999998765421 1122
Q ss_pred --hhccCEEEEEEECCCcccHHH-HHHHHHHHh
Q 033075 89 --YEEAHAVVFVIDAACPSRFED-SKTALGKFF 118 (128)
Q Consensus 89 --~~~~~~~v~v~d~~~~~s~~~-~~~~l~~~~ 118 (128)
.+.+|++++|+|++.. ++.. ...|+..+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~ 146 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAIT 146 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHH
Confidence 2479999999998764 3432 235555553
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.54 E-value=1.6e-14 Score=104.99 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=69.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCeEEEEEeCCCC----------ccch
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLR 82 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~ 82 (128)
..+||+++|.+|+|||||+++++. ... ......|.+.....+.+++..+.+|||||. +.|.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~------~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~ 247 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG------EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS 247 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT------STTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC------CCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHH
Confidence 458999999999999999999997 222 111122333334567788889999999997 4555
Q ss_pred hhHH-HhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 83 SIWE-KYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 83 ~~~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
.... .+++.+|++++|+|++++.+++.. .|+..+.
T Consensus 248 ~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~ 283 (436)
T 2hjg_A 248 VLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH 283 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH
Confidence 4444 478999999999999999888776 5666654
No 142
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.53 E-value=1.2e-14 Score=105.64 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=68.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---------------------------CCCCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---------------------------PDRIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---------------------------~~~~~~t~~~~~~~~~~~ 66 (128)
.++.++|+++|..++|||||+++|+.......... ......|++.....+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35789999999999999999999986211110000 001123444444456666
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHH
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~ 112 (128)
+..+.+||+||+++|......+++.+|++++|+|+++ .+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~ 127 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS 127 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc
Confidence 7899999999999999888899999999999999998 77775443
No 143
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1.1e-13 Score=98.41 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=58.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCCCc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP 79 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 79 (128)
.++|+++|.+|+|||||++++...... ..+....|++.+...+.+++ ..+.+||+||..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~----v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIE----AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC----------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCc----ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence 368999999999999999999982111 11122234554444555555 579999999987
Q ss_pred cch-------hhHHHhhhccCEEEEEEECCCc
Q 033075 80 GLR-------SIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 80 ~~~-------~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
++. ..+..+++.+|++++|+|+++.
T Consensus 78 ~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 78 AGASKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp TTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred ccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 653 2334567999999999999973
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=5.4e-13 Score=94.66 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=73.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CCCcCCcceEEEEEEECCeEEEEEeCCCCccch---------h
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---------S 83 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~ 83 (128)
...++++++|.+|||||||++++.. .... .....|.+.....+...+..+.+||++|..... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT------AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQ 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS------SCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHH
Confidence 4678999999999999999999987 2211 123345666666676778899999999975321 1
Q ss_pred hHHHhhhccCEEEEEEECCCcc--cHHHHHHHHHHHhc
Q 033075 84 IWEKYYEEAHAVVFVIDAACPS--RFEDSKTALGKFFG 119 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~--s~~~~~~~l~~~~~ 119 (128)
....+...+|++++|+|++++. +++....|+.++..
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 2223445799999999999887 78888888888765
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.50 E-value=1.8e-13 Score=97.43 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=61.9
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECCeEEEEEeCCCC-c--------cchhh
Q 033075 17 EFH-VLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ-P--------GLRSI 84 (128)
Q Consensus 17 ~~k-i~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~-~--------~~~~~ 84 (128)
.++ ++++|.+|||||||++++.. ... .+...+|.+.....+.+++..+.+||++|. . .+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~------~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTG------LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHC------C-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHC------CCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH
Confidence 355 99999999999999999997 222 233456666667788888999999999995 2 23333
Q ss_pred HHHhhhccCEEEEEEECCCcc--cHHHHHH
Q 033075 85 WEKYYEEAHAVVFVIDAACPS--RFEDSKT 112 (128)
Q Consensus 85 ~~~~~~~~~~~v~v~d~~~~~--s~~~~~~ 112 (128)
+ ..+..+|++++|+|++++. ..+.+..
T Consensus 252 l-~~~~~aD~il~VvD~s~~~~~~~~~~~~ 280 (364)
T 2qtf_A 252 L-SEAKYSDALILVIDSTFSENLLIETLQS 280 (364)
T ss_dssp H-HGGGGSSEEEEEEETTSCHHHHHHHHHH
T ss_pred H-HHHHhCCEEEEEEECCCCcchHHHHHHH
Confidence 3 3568999999999999876 4444433
No 146
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.50 E-value=3.2e-13 Score=97.24 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=69.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--------------------------EECC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--------------------------EVSN 67 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--------------------------~~~~ 67 (128)
+++.++|+++|.+++|||||++++... .... ..+...... ....
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI------WTSK----KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 74 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC------CCCS----SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc------cccc----ccCccccceeeccccccccceeccccccccccccccccc
Confidence 467899999999999999999999861 1110 001000000 0111
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
..+.+||+||++.|......++..+|++++|+|+++..++....+|+..+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~ 124 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 124 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH
Confidence 67999999999999998899999999999999999987677777776554
No 147
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.49 E-value=7.7e-14 Score=98.98 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=52.2
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECC----------CcccHHHHHHHHHHHhcCccccc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKFFGMRICKE 125 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~l~~~~~~~~~~~ 125 (128)
...+.+||++|++.++..|..|+++++++++|||++ +.++|+++..|++++.+.....+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 378999999999999999999999999999999998 78999999999999988754443
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.49 E-value=4.2e-14 Score=103.46 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHH--------H
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------K 87 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~ 87 (128)
..++|+++|.+|+|||||+|++....... ..+....|.+.....+.+++..+.+|||+|...+...+. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI---VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC---CSCCTTCCHHHHHHEEEETTEEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc---ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 56899999999999999999998721110 111122233333456778899999999999876544333 3
Q ss_pred hhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 88 YYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 88 ~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
+++.+|++++|+|.+++.+.+. ..|+..+.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~ 329 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK 329 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc
Confidence 5688999999999999877655 45665553
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.49 E-value=1.7e-13 Score=100.68 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCC--CCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~--~~~~t~~~~~~~~~~~ 66 (128)
.+..+||+++|.+++|||||+++|+....... ..... ....|+......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 46789999999999999999999976311100 00000 0112333344556667
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
+..+.+||+||+++|......+++.+|++++|+|+++..+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~ 149 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF 149 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC---
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc
Confidence 7899999999999999999999999999999999998654
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.48 E-value=2.2e-13 Score=101.05 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=73.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCC------------CCCCCC------CCcCCcceEEEEEEECCeEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV------------EGLPPD------RIVPTVGLNIGRIEVSNSKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~------------~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~ 76 (128)
.+..+|+++|.+++|||||+++|+...... .....+ ....|+......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 356799999999999999999996310000 000000 01123334456677888999999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~ 113 (128)
|+.+|...+..+++.+|++++|+|+++..+......|
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~ 127 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM 127 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999998877766544
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=3.5e-14 Score=103.67 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=66.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC--------CccchhhHH
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWE 86 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~ 86 (128)
....+|+++|.+|||||||++++...... ...+....|.......+.+.+..+.+|||+| ++.+.....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~---~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc---ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 35679999999999999999999871110 0111111222233444555668999999999 667777888
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFFGM 120 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~~ 120 (128)
.+++.+|++++|+|..+.-+. ...|+.+.+..
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~ 129 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR 129 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT
T ss_pred hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH
Confidence 889999999999998764333 33455555443
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=7.4e-13 Score=96.20 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=66.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC----------CCC-------------------CcCCcceEEEEEE
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDR-------------------IVPTVGLNIGRIE 64 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~----------~~~-------------------~~~t~~~~~~~~~ 64 (128)
.+..++|+++|..++|||||+++|+.......... +.. ...|+......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 45679999999999999999999987321100000 000 0112333334455
Q ss_pred ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
..+..+.+||+||+++|......+++.+|++++|+|+++...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~ 142 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ 142 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 567899999999999998888888999999999999998654
No 153
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.46 E-value=5.8e-13 Score=101.58 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=73.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CC------CCC------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GL------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+|+++|..++|||||+++++....... +. ..+ ....|+......+.+.+..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4678999999999999999999985211100 00 000 223455555567777889999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
|...+..+++.+|++++|+|+++..+++....|.
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~ 123 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH
Confidence 9999999999999999999999988887765554
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.46 E-value=7.2e-13 Score=96.41 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=67.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCCC--CcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPDR--IVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~~--~~~t~~~~~~~~~~~ 66 (128)
.+..++|+++|.+++|||||+++|+....... +....+ ...|++.....++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35689999999999999999999965211100 001111 112344444556667
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
+..+.+||+||+++|......+++.+|++++|+|+++..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 789999999999999988888899999999999998853
No 155
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=98.83 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=53.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g 77 (128)
....+++++|.+|+|||||++++... +. ........|++.+...+.+++ ..+.+||+||
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~--~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS--QA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC--Cc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 35689999999999999999999971 11 111223345555555665554 2599999999
Q ss_pred Cccchh-------hHHHhhhccCEEEEEEECCCcccHH
Q 033075 78 QPGLRS-------IWEKYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 78 ~~~~~~-------~~~~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
...... .+..+++.+|++++|+|+++.+++.
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 775433 5567789999999999999766543
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.45 E-value=1e-12 Score=94.60 Aligned_cols=103 Identities=18% Similarity=0.068 Sum_probs=72.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC-----------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.++.++|+++|.+++|||||++++.....+.. ..+.. ....|+......+...+..+.+||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 45789999999999999999999987311110 01110 011133333334555568999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
|......+++.+|++++|+|+++.... ...+|+..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~ 123 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLA 123 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHH
Confidence 988888889999999999999987653 444555544
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.44 E-value=1.5e-12 Score=89.21 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=60.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC-------cCCcceEEEEEEE--CC--eEEEEEeCCCCc---
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-------VPTVGLNIGRIEV--SN--SKLVFWDLGGQP--- 79 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~--- 79 (128)
+...++|+++|.+|+|||||+|++.. .+ .+...+ .+|.+.......+ ++ .++.+|||||..
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~--~~---~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~ 79 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFL--TD---LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 79 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSS--SC---C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhC--CC---ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence 44679999999999999999999876 21 222222 5666666544444 33 589999999963
Q ss_pred ----cchhhH-------HHhhhc-------------cCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 80 ----GLRSIW-------EKYYEE-------------AHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 80 ----~~~~~~-------~~~~~~-------------~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
.+..+. ..|+.. +|+++++++.++.........++..+..
T Consensus 80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 233333 445544 7789999977764332333345555443
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.44 E-value=6.2e-13 Score=95.58 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=66.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCC-----------CCcCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
+.++|+++|..++|||||+++|.....+. ...+.. ....|++.....+...+..+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998732111 001110 011233322233444568999999999999988
Q ss_pred hHHHhhhccCEEEEEEECCCcccHHH
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
....+++.+|++++|+|+++....+.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt 107 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT 107 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH
Confidence 88888999999999999998655443
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.44 E-value=5.5e-13 Score=96.14 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=61.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE---------------C--------C
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------N 67 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~ 67 (128)
.+++.++|+++|..++|||||++++..... ..+..+..+ |++..+....+ + .
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~ 80 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWT---DRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFL 80 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCC---CC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccCcccccCCcEEEecccccccccccccccccccccccccCcccccc
Confidence 456789999999999999999999985211 222223223 55433322221 1 1
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
..+.+||+||++.|.......+..+|++++|+|+++.
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence 6799999999998887777777888999999999964
No 160
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.1e-12 Score=93.71 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=66.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccc-------hhhHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKY 88 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~ 88 (128)
...+|+++|.|+||||||+|++.+.... ..+....|.......+.+++.++.+.|+||.-.- .......
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE----AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC----GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc----ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 3568999999999999999999982222 2234567788888899999999999999994321 1223345
Q ss_pred hhccCEEEEEEECCCcc
Q 033075 89 YEEAHAVVFVIDAACPS 105 (128)
Q Consensus 89 ~~~~~~~v~v~d~~~~~ 105 (128)
.+.||++++|+|++++.
T Consensus 147 i~~ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPL 163 (376)
T ss_dssp HHHCSEEEEEEETTSHH
T ss_pred HHhcCccccccccCccH
Confidence 68999999999999863
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.43 E-value=4.8e-13 Score=93.00 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=62.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc-cch--------hhHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE 86 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~ 86 (128)
+..+|+++|.+|+|||||+++++...... .......|.......+..++.++.+|||||.. ... ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE---CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc---cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45589999999999999999999821100 01111122222334456677999999999987 322 2224
Q ss_pred HhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 87 ~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
.+++.+|++++|+|.++ +.....|+.+.+
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l 112 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKL 112 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHH
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHH
Confidence 45678999999999877 333334544443
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=5.7e-13 Score=97.29 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=66.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCC----------Cccchhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI 84 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 84 (128)
...++++++|.+++|||||++++.. .+. .........|.......+..++..+.+||||| ++.+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~--~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLG--EER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHT--STT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhC--CCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH
Confidence 3568999999999999999999996 110 00001111223333356777889999999999 6777666
Q ss_pred HH-HhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 85 WE-KYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 85 ~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.. .+++.+|++++|+|+++.-+. ....|+..+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~ 302 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYA 302 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHH
Confidence 55 478999999999999985443 233444444
No 163
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.42 E-value=1.2e-12 Score=94.38 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=63.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE---------------C--------Ce
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------NS 68 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~~ 68 (128)
+++.++|+++|..++|||||+++|..... .....+..+ |++..+....+ + ..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWT---DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCC---C--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCcc---ccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 46789999999999999999999985211 222223223 55444333322 1 16
Q ss_pred EEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.+.+||+||++.|.......+..+|++++|+|+++.
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 799999999999887777777889999999999964
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=1e-13 Score=101.59 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=55.2
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-------C------CCCcCCcceEEEEEE
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------P------DRIVPTVGLNIGRIE 64 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~~-------~------~~~~~t~~~~~~~~~ 64 (128)
+..+..++|+++|..++|||||+++|+....... +.. . .....|++.....+.
T Consensus 38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 3456789999999999999999999975211100 000 0 012234444444566
Q ss_pred ECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.++..+.+||+||+++|.......++.+|++++|+|+++.
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 6778999999999999988888888999999999999985
No 165
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.42 E-value=2.1e-12 Score=95.87 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=65.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CC----------CCC------CCcCCcceEEEEEEECCeEEEEEeCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GL----------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLG 76 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~~----------~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~ 76 (128)
.+..+|+++|.+++|||||+++++....... +. ..+ ....|+......+.+.+..+.+||+|
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4678999999999999999999986211100 00 000 00112222234566778999999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 77 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
|+..|......+++.+|++++|+|+++...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 999998888889999999999999998654
No 166
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.42 E-value=1.8e-13 Score=99.10 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=64.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCe-EEEEEeCCCCccchhh-----
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRSI----- 84 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~----- 84 (128)
....++|+++|..++|||||++++.. ..+ ......|.......+.+.+. .+.+|||||...+..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~ 104 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVG------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV 104 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHc------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH
Confidence 34678999999999999999999987 222 11223344555567777764 8999999998766433
Q ss_pred --HHHhhhccCEEEEEEECCCcccHHHHHHHHHHHh
Q 033075 85 --WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFF 118 (128)
Q Consensus 85 --~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~ 118 (128)
...+++.+|++++|+|++..+.. ..|+..+.
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l~ 137 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPTPYE---DDVVNLFK 137 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCCHHH---HHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEeCCChHHH---HHHHHHHH
Confidence 45677899999999998444333 34444443
No 167
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.42 E-value=1.1e-12 Score=101.85 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=72.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------CCCC------CCcCCcceEEEEEEEC----------------
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPD------RIVPTVGLNIGRIEVS---------------- 66 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~------~~~~------~~~~t~~~~~~~~~~~---------------- 66 (128)
....+|+++|..++|||||+++++........ .+.+ ....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45679999999999999999999873111100 1110 1112444333344443
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
+..+.+|||||+.+|...+..+++.+|++|+|+|+++..+++....|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~ 145 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ 145 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999988887765543
No 168
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.41 E-value=5.1e-13 Score=98.23 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=63.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCC--CcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
.+.++|+++|..++|||||++++....... .+....+ ...|++.....+.+++..+.+||+||+++|......++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 357899999999999999999998721000 0001111 1234444445666788999999999999998888888999
Q ss_pred cCEEEEEEECCCc
Q 033075 92 AHAVVFVIDAACP 104 (128)
Q Consensus 92 ~~~~v~v~d~~~~ 104 (128)
+|++++|+|+++.
T Consensus 97 aD~~ilVvda~~g 109 (482)
T 1wb1_A 97 IDLALIVVDAKEG 109 (482)
T ss_dssp CCEEEEEEETTTC
T ss_pred CCEEEEEEecCCC
Confidence 9999999999883
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.41 E-value=6.6e-13 Score=94.72 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v 98 (128)
+|+++|.+++|||||+++++. ...|++.....++.++..+.+||+||+++|.......++.+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------------EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------------CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 999999999999999999873 22344555556666778999999999999988777888999999999
Q ss_pred EECCCcccHHHHHHHHHHH
Q 033075 99 IDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~~ 117 (128)
+| + ...+...++++..+
T Consensus 91 vd-~-~g~~~qt~e~~~~~ 107 (370)
T 2elf_A 91 IP-P-QGLDAHTGECIIAL 107 (370)
T ss_dssp EC-T-TCCCHHHHHHHHHH
T ss_pred Ec-C-CCCcHHHHHHHHHH
Confidence 99 4 44455555665543
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=1.2e-12 Score=99.92 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=72.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+|+++|.+++|||||+++++....... + ...+ ....|+......+.+++..+.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4678999999999999999999985211110 0 0000 112344444556777889999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l 114 (128)
+...+..+++.+|++++|+|+++..+......|.
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~ 121 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR 121 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH
Confidence 9988999999999999999999988877665543
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.2e-13 Score=100.18 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=66.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC--CCC-----------CCcCCcceEEEEEEECC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL--PPD-----------RIVPTVGLNIGRIEVSN 67 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~~--~~~-----------~~~~t~~~~~~~~~~~~ 67 (128)
++.++|+++|.+++|||||+++|+....... +. +.- ....|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 5689999999999999999999986211100 00 000 01123333345566677
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
.++.+||+||++.|......+++.+|++|+|+|+++.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 8999999999999988888889999999999999873
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.40 E-value=9.5e-13 Score=96.24 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=67.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------C--CCC-----C------CCcCCcceEEEEEEECC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------G--LPP-----D------RIVPTVGLNIGRIEVSN 67 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--------------~--~~~-----~------~~~~t~~~~~~~~~~~~ 67 (128)
++.++|+++|.+++|||||+++|+....... + .+. + ....|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 4679999999999999999999986311100 0 000 0 01234444445666677
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
..+.+||+||+++|......+++.+|++++|+|+++.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 8999999999999988888899999999999999875
No 173
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=8.4e-13 Score=94.98 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE---------------------EECC---eEEEEE
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---------------------EVSN---SKLVFW 73 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~---~~~~~~ 73 (128)
++|+++|.++||||||++++....... ......|...+.... .+++ .++.+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~----~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lv 76 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEI----ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMV 76 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc----cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEE
Confidence 589999999999999999999721111 111112322222221 1222 579999
Q ss_pred eCCCCcc----chhhHH---HhhhccCEEEEEEECCCc
Q 033075 74 DLGGQPG----LRSIWE---KYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 74 D~~g~~~----~~~~~~---~~~~~~~~~v~v~d~~~~ 104 (128)
|+||... .+.+.. .+++.+|++++|+|+++.
T Consensus 77 DtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 77 DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9999753 222333 346899999999999986
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.39 E-value=1.5e-12 Score=85.42 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=58.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE--EEEEEECCeEEEEEeCCCCcc---------
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG--------- 80 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~--------- 80 (128)
+...+..+++++|++|||||||++++.. ..+...+.++.|.. ...+.+++ .+.+||+||...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g------~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~ 93 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN------QKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKR 93 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC------C-------------CCEEEEEEET-TEEEEECCCCC------CCHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC------CCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHH
Confidence 4456778999999999999999999987 33222333444432 12333333 678999999742
Q ss_pred -chhhHHHhh---hccCEEEEEEECCCcccHH--HHHHHHH
Q 033075 81 -LRSIWEKYY---EEAHAVVFVIDAACPSRFE--DSKTALG 115 (128)
Q Consensus 81 -~~~~~~~~~---~~~~~~v~v~d~~~~~s~~--~~~~~l~ 115 (128)
+......++ +.++++++++|++++.+.. ++..|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 233333444 4689999999999876654 3444554
No 175
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.39 E-value=2.3e-12 Score=93.75 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=59.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---CCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhh--------
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------- 84 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------- 84 (128)
..++++++|++|||||||++++.. ... .+....|.......+.+++..+.+||++|.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g------~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN------KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT------STTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred cCceEEEECCCCCCHHHHHHHHhC------CcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 348999999999999999999987 211 111122233334567788899999999997433221
Q ss_pred ----HHHhhhccCEEEEEEECCCcccHHH
Q 033075 85 ----WEKYYEEAHAVVFVIDAACPSRFED 109 (128)
Q Consensus 85 ----~~~~~~~~~~~v~v~d~~~~~s~~~ 109 (128)
...+++.+|++++++|+++..+.+.
T Consensus 253 ~~~~~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 253 SNYRVVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 1346788999999999998766654
No 176
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.39 E-value=3.3e-13 Score=101.33 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=66.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE----------------ECCeEEEEEeCCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQ 78 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~ 78 (128)
.+..+|+++|..++|||||+++++..... ...+.....+++....... +....+.+|||||+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 45789999999999999999999872111 1111122334554333221 11136999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEECCC---cccHHHHH
Q 033075 79 PGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK 111 (128)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~ 111 (128)
+.|..++..+++.+|++++|+|+++ +.+++.+.
T Consensus 81 e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~ 116 (594)
T 1g7s_A 81 EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116 (594)
T ss_dssp SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence 9999888888899999999999999 55555543
No 177
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=1.8e-14 Score=106.86 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=66.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcC--CcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (128)
++..+|+++|.+++|||||+++|... .+.....+ |.......+.. .+..+.+|||||++.|..++..+++.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~------~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~ 75 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKT------QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQV 75 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHH------HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHcc
Confidence 35678999999999999999999872 11111111 11111223333 34689999999999999998889999
Q ss_pred cCEEEEEEECCCcccHHHHH
Q 033075 92 AHAVVFVIDAACPSRFEDSK 111 (128)
Q Consensus 92 ~~~~v~v~d~~~~~s~~~~~ 111 (128)
+|++++|+|+++....+...
T Consensus 76 aD~vILVVDa~dg~~~qt~e 95 (537)
T 3izy_P 76 TDIVILVVAADDGVMKQTVE 95 (537)
T ss_dssp BSSCEEECBSSSCCCHHHHH
T ss_pred CCEEEEEEECCCCccHHHHH
Confidence 99999999999977665543
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.36 E-value=7.8e-12 Score=95.58 Aligned_cols=99 Identities=17% Similarity=0.016 Sum_probs=71.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------CCcCCcceEEEEEEECC-------eEEEEE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSN-------SKLVFW 73 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~-------~~~~~~ 73 (128)
.+..+|+++|..++|||||+++++....... + ...+ ....|+......+.+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 4578999999999999999999976211100 0 0000 11123333344556665 899999
Q ss_pred eCCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (128)
Q Consensus 74 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~ 113 (128)
||||+.+|...+..+++.+|++|+|+|+++..+......|
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 9999999998899999999999999999987765554433
No 179
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.36 E-value=1e-11 Score=93.24 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=69.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCC----------cCCcceEEEEEEEC---C--eEEEEEeCCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRI----------VPTVGLNIGRIEVS---N--SKLVFWDLGGQ 78 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~----------~~t~~~~~~~~~~~---~--~~~~~~D~~g~ 78 (128)
.+..+|+++|..++|||||+++++........ ...... ..|+......+.+. + ..+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 35679999999999999999999863211100 000000 01221112233332 2 78999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 79 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.+|...+..+++.+|++++|+|+++..+.+....|....
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~ 122 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV 122 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 999998899999999999999999998888877776544
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=4.6e-12 Score=94.48 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=66.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceE---E--------------------------------
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN---I-------------------------------- 60 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~---~-------------------------------- 60 (128)
...+|+++|.+|+|||||+|+++. .+..+........|.... .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg--~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLE--QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHT--SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC--CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 468999999999999999999998 211000001111111000 0
Q ss_pred --EEEEECC---eEEEEEeCCCCcc-----------chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 61 --GRIEVSN---SKLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 61 --~~~~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
..+.+.+ .++.+|||||... +......++..+|++++|+|+++....+....|+..+..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence 0011111 3689999999764 556677788999999999999887666677777777654
No 181
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.35 E-value=5.9e-12 Score=94.63 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=66.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCCC------cCCcceE----EEEEEEC-----CeEEEEEeCCCCc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRI------VPTVGLN----IGRIEVS-----NSKLVFWDLGGQP 79 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~------~~t~~~~----~~~~~~~-----~~~~~~~D~~g~~ 79 (128)
+..+|+++|..++|||||+++++........ ...... ....|.+ ...+.+. ++.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4578999999999999999999873211100 000011 1112222 2334343 2789999999999
Q ss_pred cchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
+|...+..+++.+|++++|+|+++..+++....|....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~ 120 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988888777776544
No 182
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.34 E-value=1.4e-11 Score=84.89 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCc-------------cchhhHHHhhhccCEEE-EEEECCCcccHHHHHHHHHHH
Q 033075 68 SKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 68 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~v-~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.++.+|||||.. .+..+...+++.++.++ +|+|+++.-+......++..+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~ 188 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 188 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh
Confidence 689999999953 34567778888888776 789998755444443455544
No 183
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=1.8e-11 Score=87.21 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEEC---------------------CeEEEEEeCC
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---------------------NSKLVFWDLG 76 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~~~D~~ 76 (128)
++++++|.+|+|||||++++....... .+....|+..+.....+. +..+.+||+|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v----~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALA----ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTC----SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcc----cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECC
Confidence 679999999999999999998832111 111122333333333332 3579999999
Q ss_pred CCccc-------hhhHHHhhhccCEEEEEEECCC
Q 033075 77 GQPGL-------RSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 77 g~~~~-------~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
|.... ......+++.+|++++|+|+++
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 97653 2234456799999999999986
No 184
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.29 E-value=3.6e-13 Score=99.22 Aligned_cols=86 Identities=26% Similarity=0.273 Sum_probs=62.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCE
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 94 (128)
++..+|+++|..++|||||++++....... +..+ ..|.......+.+++..+.+||+||++.|..++...+..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e~~---GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVAS-GEAG---GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSB-TTBC---CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCcc-ccCC---CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 467899999999999999999998721110 1000 011111112334456789999999999999888888899999
Q ss_pred EEEEEECCCc
Q 033075 95 VVFVIDAACP 104 (128)
Q Consensus 95 ~v~v~d~~~~ 104 (128)
+++|+|+++.
T Consensus 78 aILVVda~~g 87 (501)
T 1zo1_I 78 VVLVVAADDG 87 (501)
T ss_dssp EEEEEETTTB
T ss_pred EEEEeecccC
Confidence 9999999883
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=5.7e-12 Score=89.62 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=53.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCC--------cCCcceEEEEEE--ECC--eEEEEEeCCCC---
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--------VPTVGLNIGRIE--VSN--SKLVFWDLGGQ--- 78 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~--------~~t~~~~~~~~~--~~~--~~~~~~D~~g~--- 78 (128)
+...++|+++|++|+|||||++++... ..+...+ .+|++....... ..+ ..+.+||++|.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~-----~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLT-----DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTC-----CC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCC-----CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 356789999999999999999998761 1111111 244444433332 234 47999999998
Q ss_pred ----ccchhhHH-------HhhhccCEE-----------EEEEECCC-cccHHHHH-HHHHHH
Q 033075 79 ----PGLRSIWE-------KYYEEAHAV-----------VFVIDAAC-PSRFEDSK-TALGKF 117 (128)
Q Consensus 79 ----~~~~~~~~-------~~~~~~~~~-----------v~v~d~~~-~~s~~~~~-~~l~~~ 117 (128)
+.+..++. .|++.++++ +++|++++ ..++..+. .|+..+
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 66666665 666665443 35555554 45555554 345444
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=2.8e-11 Score=92.41 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=38.4
Q ss_pred EEEEEeCCCCcc---chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 69 KLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 69 ~~~~~D~~g~~~---~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
.+.+|||||... .......+++.+|++++|+|++++.+..+...|...+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 589999999554 3455667889999999999999988887776555444
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.25 E-value=3.4e-11 Score=83.62 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCcc-------------chhhHHHhhhccCEEEEEEECCCc
Q 033075 67 NSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 67 ~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
+.++.+|||||... +......+++.+|++++|+|.++.
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 36799999999753 455677888999999999997543
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.25 E-value=1.6e-10 Score=87.90 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=72.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCC--CC-----CCCCCC-------cCCcceEEEEEEECCeEEEEEeCCCCcc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EG-----LPPDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~--~~-----~~~~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (128)
.+..+++++|++++|||||+++++...... .+ .....+ ..+.......+...+..+.+||+||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 467799999999999999999998532210 00 001111 1233334456666779999999999999
Q ss_pred chhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHHH
Q 033075 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKF 117 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~~ 117 (128)
|......+++.+|++++|+|.++....... .++..+
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~ 122 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVA 122 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHH
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHH
Confidence 999889999999999999998876554433 444444
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.23 E-value=2e-11 Score=96.87 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCC-----C--CCcCCcceE----EEEEEECCeEEEEEeCCCCccc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPP-----D--RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGL 81 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~-~~~~~-----~--~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~ 81 (128)
.++.++|+++|..++|||||+++|.....+. ...+. + ....+.|.+ ...+...+..+.+||+||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999998731110 00000 0 111222322 2234445589999999999999
Q ss_pred hhhHHHhhhccCEEEEEEECCCccc
Q 033075 82 RSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 82 ~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
......+++.+|++|+|+|+++...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~ 397 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM 397 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc
Confidence 8888888999999999999998643
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.23 E-value=8.7e-11 Score=83.34 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCccc-------------hhhHHHhhhccCEEEEEEECCCcc
Q 033075 68 SKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 68 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
..+.+||+||...+ ..+...|++++|++++|+|.++.+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~ 186 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD 186 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence 57899999997765 667788899999999999876644
No 191
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.21 E-value=2.6e-11 Score=86.26 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=58.1
Q ss_pred CCcceEEEEEEECCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCC----------cccHHHHHHHHHHHhcCccc
Q 033075 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKFFGMRIC 123 (128)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~l~~~~~~~~~ 123 (128)
+|+|+....+.+++..+.+||++|++.++..|..++++++++|||||+++ ..+++++..|+..+.+....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 36777777888889999999999999999999999999999999999999 78999999999999987654
Q ss_pred ccC
Q 033075 124 KER 126 (128)
Q Consensus 124 ~~~ 126 (128)
.+.
T Consensus 267 ~~~ 269 (362)
T 1zcb_A 267 SNV 269 (362)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 192
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.19 E-value=2.2e-12 Score=96.90 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=47.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------------------------CCCCC--CCcCCcceEEEEEEEC
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVS 66 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------------------------~~~~~--~~~~t~~~~~~~~~~~ 66 (128)
.+..++|+++|.+++|||||+++|+....... +.... ....|+......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45678999999999999999999965211110 00000 0112333333445555
Q ss_pred CeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCc
Q 033075 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (128)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 104 (128)
+..+.+||+||++.|......+++.+|++|+|+|+++.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 68899999999999988777788999999999999863
No 193
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.8e-10 Score=82.64 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=60.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-----------------eEEEEEeCCC
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g 77 (128)
++..+++++|++|||||||++.+..... .........|+..+...+.+.+ ..+.+||++|
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~---a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL---GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT---TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc---ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 3467999999999999999999998111 0111122234445555666665 4689999999
Q ss_pred Cc-------cchhhHHHhhhccCEEEEEEECCC
Q 033075 78 QP-------GLRSIWEKYYEEAHAVVFVIDAAC 103 (128)
Q Consensus 78 ~~-------~~~~~~~~~~~~~~~~v~v~d~~~ 103 (128)
.. .+...+...++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 244455667789999999999875
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=2.3e-10 Score=82.71 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECC-eEEEEEeCCCCcc-------chhhHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~ 89 (128)
-.++++|++|||||||++++....... .+....|...+...+.+++ ..+.+||++|... +........
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i----~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI----APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE----CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc----cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 458999999999999999998732111 1122334445555676765 8899999999632 111222334
Q ss_pred hccCEEEEEEECCCcccHHHHHHHHHHHhc
Q 033075 90 EEAHAVVFVIDAACPSRFEDSKTALGKFFG 119 (128)
Q Consensus 90 ~~~~~~v~v~d~~~~~s~~~~~~~l~~~~~ 119 (128)
..++.++.++|++ ++.+.++..|..++..
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~ 262 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGA 262 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHH
Confidence 6799999999998 6777788777776654
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.05 E-value=2.3e-09 Score=79.93 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=71.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------C-----CCC------CCCcCCcceEEEEEEECCeEEEEEeCCC
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------G-----LPP------DRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~-------~-----~~~------~~~~~t~~~~~~~~~~~~~~~~~~D~~g 77 (128)
+.-+|+|+|..++|||||..+|+.....+. + ... .+..-|+......+.+++..+.|.||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 567899999999999999999975221100 0 000 0111233333567888999999999999
Q ss_pred CccchhhHHHhhhccCEEEEEEECCCcccHHHHHHH
Q 033075 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (128)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~ 113 (128)
+.+|.......++-+|++|+|+|+...-.-+....|
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~ 145 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM 145 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence 999999999999999999999999987766655544
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.00 E-value=3.3e-09 Score=75.07 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+|+++|.++||||||++++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999987
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=4.2e-09 Score=73.15 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.-.++|+++|++|+|||||++++..
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999999999875
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=4.5e-09 Score=76.03 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=34.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEE--CC--eEEEEEeCCCCccc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGL 81 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~ 81 (128)
.-.++|+++|++|+|||||++++........+.. .....++.+.....+.+ .+ ..+++||++|....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4567899999999999999999997211100100 00011233222111111 22 47899999997643
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.78 E-value=5.8e-09 Score=79.09 Aligned_cols=91 Identities=19% Similarity=0.126 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCC-----CCC-------cCCcceEEEEEEECCeEEEEEeCCCCccchh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP-----DRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~--~~~-----~~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (128)
-+|+++|...+|||||..+|+.....+.. ... ..+ --|+......+.+++..+.+.||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47899999999999999999864332110 000 000 0122223345677889999999999999999
Q ss_pred hHHHhhhccCEEEEEEECCCcccHH
Q 033075 84 IWEKYYEEAHAVVFVIDAACPSRFE 108 (128)
Q Consensus 84 ~~~~~~~~~~~~v~v~d~~~~~s~~ 108 (128)
.....++-+|++|+|+|+...-.-+
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q 107 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ 107 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH
Confidence 9999999999999999998754433
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.75 E-value=4e-08 Score=69.53 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=25.3
Q ss_pred CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~ 107 (128)
.+..+.++|++|..... ......+|++++|+|.++.+..
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~ 203 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDEL 203 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhH
Confidence 45788999999964322 3345789999999998875543
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.70 E-value=2.1e-07 Score=71.40 Aligned_cols=95 Identities=17% Similarity=0.040 Sum_probs=64.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhcc------CCCC--CCCC--CCcC----CcceEEEEEEEC-------CeEEEEEe
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYS------NVEG--LPPD--RIVP----TVGLNIGRIEVS-------NSKLVFWD 74 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~------~~~~--~~~~--~~~~----t~~~~~~~~~~~-------~~~~~~~D 74 (128)
+.-+|+++|...+|||||..+|+.... +..+ ...+ ...- |+-....++.+. ++.+.+.|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 456899999999999999999975321 1100 0000 0011 222222344443 47899999
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHH
Q 033075 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110 (128)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~ 110 (128)
|||+-+|.......++-+|++|+|+|+...-..+..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~ 127 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE 127 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH
Confidence 999999999999999999999999999986654443
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.64 E-value=9.1e-08 Score=67.77 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=28.6
Q ss_pred CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcccH
Q 033075 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107 (128)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~ 107 (128)
.+..+.++||+|.... .......+|++++|+|....+.+
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~ 208 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL 208 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH
Confidence 4578999999995432 23345889999999998765543
No 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=3.4e-09 Score=73.58 Aligned_cols=79 Identities=10% Similarity=-0.058 Sum_probs=62.7
Q ss_pred HHHHHHHhhccCCCCCCC-CCCcCCcceEEEEEEE-CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc-cHH
Q 033075 32 TLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFE 108 (128)
Q Consensus 32 sl~~~l~~~~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~ 108 (128)
+|+.++.. +.+. ..+.||+|..+. ... .+..+.+||+ +++++.++..+++++|++++|||+++++ ++.
T Consensus 32 sl~~~~~~------~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~ 102 (301)
T 1u0l_A 32 ERILCKLR------GKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY 102 (301)
T ss_dssp CEEEEEEC------GGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred cEEEEEEc------ccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence 45566655 6777 778899996654 323 2247899999 8889899999999999999999999987 799
Q ss_pred HHHHHHHHHhc
Q 033075 109 DSKTALGKFFG 119 (128)
Q Consensus 109 ~~~~~l~~~~~ 119 (128)
.+..|+.++..
T Consensus 103 ~l~~~l~~~~~ 113 (301)
T 1u0l_A 103 IIDKFLVLAEK 113 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.56 E-value=6e-08 Score=68.40 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCccc
Q 033075 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 106 (128)
.+.++.++||||....... ..+.+|++++|+|.++.+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-----
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH
Confidence 4578999999997654332 4589999999999876543
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.54 E-value=7.4e-07 Score=68.72 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+|+++|..++|||||++.+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 567999999999999999999987
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.52 E-value=1.2e-07 Score=65.33 Aligned_cols=59 Identities=29% Similarity=0.401 Sum_probs=34.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEEECCeEEEEEeCCCCc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 79 (128)
...++++++|.+|+|||||+|++... +. .........|...+ .+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~--~~-~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK--NI-AKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS--CC-C------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC--ce-eecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 45689999999999999999999871 11 00001111122211 1222 3468999999954
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.50 E-value=2.5e-07 Score=65.20 Aligned_cols=37 Identities=3% Similarity=0.014 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCccchhhHHHhhhccCEEEEEEECCCcc
Q 033075 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (128)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 105 (128)
.+.++.++||+|...-.. .....+|.+++++|.+..+
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc
Confidence 568899999999764322 2347899999999876543
No 208
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=3.8e-08 Score=67.11 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEE--EEEEECCeEEEEEeCCCCc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQP 79 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~ 79 (128)
++++++|.+|+|||||+|++.. .... ...++.|... ..+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~------~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG------KRAS-SVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT------TCC-----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhc------cccc-ccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 6999999999999999999997 2111 1112222111 11222 3578999999954
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.37 E-value=9.4e-07 Score=59.53 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..-++++|.+||||||+++.+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567889999999999999999974
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.36 E-value=7.5e-07 Score=66.96 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=41.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEEE---ECCeEEEEEeCCCCcc
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGGQPG 80 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~D~~g~~~ 80 (128)
..+..+|+++|.+++|||||+|++.+..... .........|.+....... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4567899999999999999999999721100 0111111234443221111 2357899999999543
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.28 E-value=7.6e-06 Score=60.55 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=51.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-----CCCcCC-----------cceEEEE----------------
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-----DRIVPT-----------VGLNIGR---------------- 62 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~-----~~~~~t-----------~~~~~~~---------------- 62 (128)
.+...|+++|.+||||||+++.+....... +... +.+.+. .+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 345689999999999999999998522110 0000 000000 0111111
Q ss_pred -EEECCeEEEEEeCCCCccchh-hH---HHh--hhccCEEEEEEECCCccc
Q 033075 63 -IEVSNSKLVFWDLGGQPGLRS-IW---EKY--YEEAHAVVFVIDAACPSR 106 (128)
Q Consensus 63 -~~~~~~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~v~v~d~~~~~s 106 (128)
....++.+.++||||...... .. ... ...+|.+++|+|.+....
T Consensus 178 ~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 178 KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 011457899999999764321 11 111 237899999999987543
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.23 E-value=1.6e-06 Score=61.73 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCCCcCCcceEEEEEEECCeEEEEEeCCCCccch--------hhH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIW 85 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~ 85 (128)
+..+++++|.+|+|||||+|++........... ......|.. ...+.+. ..+.++||||-.... ...
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLE-SGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 346899999999999999999998311000000 001112222 1222222 348999999954221 122
Q ss_pred HHhh--hccCEEEEEEEC
Q 033075 86 EKYY--EEAHAVVFVIDA 101 (128)
Q Consensus 86 ~~~~--~~~~~~v~v~d~ 101 (128)
..++ +..+.++++++.
T Consensus 238 ~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHHSCSSCCCCEEEEECT
T ss_pred HHHhcccccCceEEEEcC
Confidence 2222 456777777765
No 213
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.22 E-value=1.2e-07 Score=69.47 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=55.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCCCcCCcceEEEEE--EE-CC-eEEEEEeCCCCcc--chhhH-
Q 033075 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV-SN-SKLVFWDLGGQPG--LRSIW- 85 (128)
Q Consensus 13 ~~~~~~ki~l~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~-~~~~~~D~~g~~~--~~~~~- 85 (128)
.......|+++|.+|+||||+.+++...... ...++.+++...+ .. +. ....+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-------~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~ 107 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNF-------IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCA 107 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-------cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999862111 0111221110000 00 11 2345788888632 23332
Q ss_pred -------HHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075 86 -------EKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (128)
Q Consensus 86 -------~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~ 116 (128)
..++....+.++|+|.++. +.+....|+..
T Consensus 108 ~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~ 144 (469)
T 1bif_A 108 LAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNF 144 (469)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHH
Confidence 4556667888999999987 45555555443
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.18 E-value=1e-06 Score=58.22 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHHH
Q 033075 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (128)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~~ 116 (128)
.+|+..++.+|..|++++|++|||+|.+|++.++ +++.+.+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~e 149 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSH 149 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHH
Confidence 3478899999999999999999999999987765 7676633
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.13 E-value=3.4e-05 Score=55.95 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..++++++|++|+|||||++.+..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999987
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.98 E-value=4.9e-06 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..+..+|+++|.+|||||||++++..
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 35678999999999999999999997
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.92 E-value=4.8e-06 Score=59.28 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+..+++++|.+|+|||||+|++...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 3568999999999999999999983
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.91 E-value=7.1e-06 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.++++++|++|+|||||++.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999884
No 219
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.88 E-value=1.5e-05 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3579999999999999999987
No 220
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.87 E-value=4.1e-06 Score=57.85 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEECCCcccHHHHHHHHH
Q 033075 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (128)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~l~ 115 (128)
.+|+..++.+|..|++++|++|||+|.+|++.++ +++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~ 233 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFS 233 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHH
Confidence 4678899999999999999999999999998765 555444
No 221
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.83 E-value=2e-05 Score=52.32 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.82 E-value=2.5e-05 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999997
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=1.4e-05 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+++++|++|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 224
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.81 E-value=2.4e-05 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999987
No 225
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.79 E-value=2.6e-05 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 226
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.78 E-value=2.8e-05 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 227
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.77 E-value=3.8e-05 Score=52.38 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999987
No 228
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.76 E-value=3.1e-05 Score=51.94 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 229
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.76 E-value=2.9e-05 Score=52.91 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 578999999999999999987
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=2e-05 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
--++++|++|||||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 231
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.72 E-value=3.5e-05 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|||||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 232
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.72 E-value=5.1e-05 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999987
No 233
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.72 E-value=3.3e-05 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.2
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...+..+++++|.+|+|||||++++..
T Consensus 25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 25 LRESGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcccCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3345678999999999999999999987
No 234
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.71 E-value=4.2e-05 Score=50.54 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.71 E-value=3.5e-05 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3679999999999999999987
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.71 E-value=2.2e-05 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
-.++++|++|||||||++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998743
No 237
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.69 E-value=5.6e-05 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 238
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.69 E-value=5.9e-05 Score=53.57 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 478999999999999999997
No 239
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.68 E-value=5e-05 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999987
No 240
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.67 E-value=5.1e-05 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999987
No 241
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=0.00012 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+-.=|.++|++++|||+|+|.++..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45667889999999999999999863
No 242
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.66 E-value=5.8e-05 Score=51.81 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999987
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.66 E-value=2.9e-05 Score=49.88 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhhc
Q 033075 20 VLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~~ 41 (128)
++++|++|||||||++.+....
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998743
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.65 E-value=3e-05 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
--++++|++|||||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 245
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.65 E-value=2.9e-05 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|||||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 334789999999999999999987
No 246
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.65 E-value=0.00011 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
....++++|++|||||||+|.+.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4458999999999999999999983
No 247
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.64 E-value=6.3e-05 Score=53.53 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 578999999999999999987
No 248
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.64 E-value=5.4e-05 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999987
No 249
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.64 E-value=8.9e-05 Score=52.90 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 478999999999999999997
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.63 E-value=4.6e-05 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.62 E-value=3.5e-05 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
--++++|++|||||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999998743
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=3.4e-05 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|++||||||+++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999987
No 253
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.59 E-value=8.1e-05 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 478999999999999999997
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.59 E-value=4.1e-05 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
--++++|++|||||||++.+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999998743
No 255
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.58 E-value=8.4e-05 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999997
No 256
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.58 E-value=8.6e-05 Score=52.75 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 578999999999999999997
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.58 E-value=4.4e-05 Score=50.40 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
+--.++++|++|||||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468999999999999999998743
No 258
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.58 E-value=6.3e-05 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.57 E-value=5.6e-05 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++...++++|++|||||||++.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 260
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.57 E-value=9.1e-05 Score=52.68 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 578999999999999999997
No 261
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.55 E-value=0.0001 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 578999999999999999997
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=5.6e-05 Score=49.37 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
.--++++|++|||||||++.+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998743
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.54 E-value=6.3e-05 Score=48.98 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++...++++|++|||||||++.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999774
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.53 E-value=5.6e-05 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.--++++|++||||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999873
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.53 E-value=6e-05 Score=48.77 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033075 20 VLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~~ 40 (128)
|+|+||+|||||||++.++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 266
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.52 E-value=6.3e-05 Score=47.38 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=22.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
++---++++|+.|+|||||++.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999999843
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=6.8e-05 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLK 38 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~ 38 (128)
+...++++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 268
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.51 E-value=0.00012 Score=49.85 Aligned_cols=21 Identities=48% Similarity=0.748 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999987
No 269
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.51 E-value=7.2e-05 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999997
No 270
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.49 E-value=7.2e-05 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.48 E-value=5.6e-05 Score=47.95 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCCHHHHHHH
Q 033075 18 FHVLILGIDKAGKTTLLEK 36 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~ 36 (128)
--++++|++|||||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999999994
No 272
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.48 E-value=8e-05 Score=52.68 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|||||||++.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 578999999999999999997
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.48 E-value=7.5e-05 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|+++|++||||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.48 E-value=7.4e-05 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 275
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.00011 Score=46.66 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+.-.++++|++|+|||||++.+...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999873
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=7.8e-05 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
...++++|++||||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999874
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=8.4e-05 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
..-|+++|++||||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999873
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.44 E-value=8.6e-05 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|++||||||+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.43 E-value=9.4e-05 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.-.++++|++||||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999976
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.00012 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.-.|+++|++||||||+.+.+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3455899999999999999999976
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.41 E-value=0.00011 Score=45.99 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 033075 18 FHVLILGIDKAGKTTLLEKL 37 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l 37 (128)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
No 282
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.40 E-value=0.00012 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 678999999999999999987
No 283
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.40 E-value=0.0002 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334789999999999999999987
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.40 E-value=0.00011 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999986
No 285
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.39 E-value=0.00012 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.38 E-value=0.00012 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-|++.|++||||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00015 Score=45.73 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...++++|++||||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.00013 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999965
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.37 E-value=0.00014 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|+++|++||||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 290
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=0.00026 Score=44.62 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+...+.....-.+++.|++|+|||++++.+..
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 333444444556789999999999999999987
No 291
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.36 E-value=0.00015 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.36 E-value=9.8e-05 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.187 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.++++|++|+|||||++.+...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999873
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.36 E-value=0.00012 Score=47.32 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|+++|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999976
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00012 Score=47.46 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 033075 19 HVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
.++++|++|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999998743
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.35 E-value=0.00012 Score=48.57 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033075 18 FHVLILGIDKAGKTTLLEKLK 38 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~ 38 (128)
--++++|++|||||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999887
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.35 E-value=3.2e-05 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.34 E-value=0.00013 Score=49.78 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.34 E-value=0.0002 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..-|+++|++||||||+++.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999876
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.33 E-value=0.00016 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+|+++|.+||||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999865
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.32 E-value=0.00014 Score=49.38 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++.-.++++|++||||||+++.+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44457899999999999999999873
No 301
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=0.00017 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|++|||||||+|.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999999997
No 302
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.32 E-value=0.00028 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34789999999999999999987
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.32 E-value=0.00017 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.|++.|.+||||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999873
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.32 E-value=0.00018 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++...++++|++||||||+++.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999976
No 305
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.32 E-value=0.00014 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-.++++|++|||||||++.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 34679999999999999999987
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.32 E-value=0.00014 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
=.++++|++|||||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.0002 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 308
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.30 E-value=0.0016 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-|+++|++|+||||++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 56789999999999999998875
No 309
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.30 E-value=0.00018 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999987
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00021 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++...|+++|.+||||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998763
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.30 E-value=0.00018 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.|++.|++||||||+++.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=0.00022 Score=45.34 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|+++|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.29 E-value=0.0002 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|++.|++||||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 314
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=0.0002 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.29 E-value=8.6e-05 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=16.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH-h
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLK-S 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~-~ 39 (128)
+---++++|++||||||+++.+. .
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34468999999999999999999 5
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.0002 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 344789999999999999999987
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.29 E-value=0.00017 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++.=.++|+|++|+|||||++.+...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 45567899999999999999999873
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.0002 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999976
No 319
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.28 E-value=0.00023 Score=47.69 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..+|+++|++||||||+++.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999975
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00024 Score=45.94 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.....|+++|.+||||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999976
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.27 E-value=0.00016 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||++.+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.0002 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|+++|+|||||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00022 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 324
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.25 E-value=0.00017 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=.++++|++|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 344789999999999999999887
No 325
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.24 E-value=0.00022 Score=53.90 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 599999999999999999997
No 326
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.24 E-value=0.00027 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+...|+++|.+||||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4566799999999999999999865
No 327
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.23 E-value=0.00022 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+|++.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.23 E-value=0.00027 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|++.|.+||||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.22 E-value=0.00023 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|++.|.+||||||+++.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 330
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.22 E-value=0.00023 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=22.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++..||+++|.++|||||+++++.-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999999999865
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.22 E-value=0.00017 Score=51.05 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
.-+++++|++|+|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998743
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.21 E-value=0.00028 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+..-++|+|++|||||||++.+...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678999999999999999998763
No 333
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.21 E-value=0.00032 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.-.++++|++|||||||++.+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999988
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.21 E-value=0.00028 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+...|+++|++||||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999873
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.0003 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.20 E-value=0.0003 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
...|++.|.+||||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 337
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.20 E-value=0.00021 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033075 17 EFHVLILGIDKAGKTTLLEKLK 38 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~ 38 (128)
.--++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999998
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.0003 Score=45.44 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999875
No 339
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00034 Score=43.99 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+...+.....-.+++.|++|+|||++++.+...
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 333444445667899999999999999999873
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00029 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.19 E-value=0.00023 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999976
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.17 E-value=0.0003 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.17 E-value=0.00025 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00028 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-++++|.+|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 34578999999999999999986
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.16 E-value=0.00033 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++.-.++++|++|||||||++.+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999987
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.15 E-value=0.00039 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.-.++++|++||||||+++.+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444899999999999999999976
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.15 E-value=0.00034 Score=43.71 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.13 E-value=0.00038 Score=44.75 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+...|+++|.+||||||+.+.|..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999876
No 349
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.13 E-value=0.00028 Score=57.67 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++-=+++++|++|||||||++.+..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3445899999999999999999998
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.13 E-value=0.00037 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999976
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00037 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999976
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.10 E-value=0.00039 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLK 38 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~ 38 (128)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999998
No 353
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00039 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...-|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999976
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00045 Score=47.63 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+...|+++|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998765
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.09 E-value=0.0004 Score=45.81 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.09 E-value=0.003 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678889999999999999875
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.09 E-value=0.00038 Score=44.14 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|+++|.+|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 358
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.0004 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
-++++|++|||||||++.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999883
No 359
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.00061 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++|+|||||++.+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999987
No 360
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.07 E-value=0.0005 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.++++|++|+|||||++.+...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.07 E-value=0.00049 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.07 E-value=0.00038 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|++||||||+.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999976
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.07 E-value=0.00039 Score=44.50 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
-|++.|.+||||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 364
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.06 E-value=0.00044 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=.++++|++|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34789999999999999999987
No 365
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.06 E-value=0.00028 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-.++++|++|+|||+|++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.06 E-value=0.00037 Score=48.39 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.--++++|++||||||+++.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 447889999999999999999764
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.00045 Score=44.03 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.06 E-value=0.00047 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+..-++|+|++|||||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999774
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.05 E-value=0.00052 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..-++++|++||||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00039 Score=48.20 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.--++++|++||||||+++.+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999774
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.04 E-value=0.00053 Score=47.99 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+.+-++++|++||||||+++.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998663
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.03 E-value=0.00041 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999866
No 373
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.03 E-value=0.00044 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 374
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00052 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999999998
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.02 E-value=0.00057 Score=45.29 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.00 E-value=0.00068 Score=48.30 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++.-.++++|++||||||+++.+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456999999999999999999873
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.00 E-value=0.00052 Score=43.03 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.00 E-value=0.00059 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00061 Score=43.37 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-++++|.+|+||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999876
No 380
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00011 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-.++++|++|||||||+|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 34789999999999999999986
No 381
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.99 E-value=0.00047 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+.--++++|++||||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999773
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.00038 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
....|+++|++||||||+.+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998763
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00037 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.00066 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|++.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.98 E-value=0.00042 Score=49.73 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|||||||++.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 579999999999999999987
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.98 E-value=0.00053 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=19.0
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFH-VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~k-i~l~G~~~~GKTsl~~~l~~ 39 (128)
+.| |+++|+|||||+|.+..+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 45689999999999999976
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.97 E-value=0.00054 Score=43.53 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999866
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.97 E-value=0.0007 Score=42.87 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...|+++|.+||||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999976
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.97 E-value=0.00016 Score=46.92 Aligned_cols=21 Identities=52% Similarity=0.732 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.97 E-value=0.00053 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999975
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.97 E-value=0.00035 Score=46.31 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
++..-|++.|++||||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567899999999999999999873
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.95 E-value=0.00052 Score=47.99 Aligned_cols=22 Identities=45% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++.|++|+|||||++.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999987
No 393
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.94 E-value=0.00072 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+--.++++|++|+|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 445789999999999999999998
No 394
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.94 E-value=0.0007 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999866
No 395
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00046 Score=50.55 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+--.++++|++|||||||++.+.+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34557999999999999999999873
No 396
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.0011 Score=42.67 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++.|++|+|||++++.+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999876
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.91 E-value=0.001 Score=48.17 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.=-++++|++||||||+++.+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 4444689999999999999999987
No 398
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.91 E-value=0.00063 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=+++++|++|+|||||++.+.+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445889999999999999999998
No 399
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.91 E-value=0.00075 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.++++|++|+|||||++.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999873
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.90 E-value=0.00063 Score=46.21 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 389999999999999999987
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.00072 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.++++|++||||||+++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3499999999999999999987
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.0016 Score=42.66 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999876
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.88 E-value=0.0008 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+.+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.87 E-value=0.00066 Score=48.20 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.--++++|++||||||+++.+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 446889999999999999999774
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00087 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999876
No 406
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.0012 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...-.+++.|++|+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556799999999999999999987
No 407
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.84 E-value=0.00088 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.84 E-value=0.00092 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+.+.|++.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 409
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.0011 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999997
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.83 E-value=0.00063 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
--++++|++|||||||++.+...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999874
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.83 E-value=0.0011 Score=44.08 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~~ 41 (128)
+..-|++.|++||||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998743
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.82 E-value=0.00073 Score=46.28 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||++.+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999876
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00072 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 414
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.82 E-value=0.00099 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-=+++++|++|||||||++.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344789999999999999999987
No 415
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.0009 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999987
No 416
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.81 E-value=0.001 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999997
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.80 E-value=0.0011 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..-|+++|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999999876
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00094 Score=41.43 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++|++|+||||++..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999864
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.79 E-value=0.00081 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+.--++++|++|||||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3446899999999999999999763
No 420
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00091 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
---++++|++|+|||||+..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34578999999999999999987
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.00094 Score=43.37 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999975
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.77 E-value=0.0015 Score=47.80 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+...+.++..-.++++|++|+|||++++.+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444444566678999999999999999999874
No 423
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.77 E-value=0.015 Score=42.23 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|+++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788889999999999988875
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.0012 Score=42.70 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-..+.|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999876
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.0007 Score=47.13 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-++++|..|||||||++.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 467899999999999999997
No 426
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.75 E-value=0.0021 Score=43.40 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
......+++.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45667899999999999999999987
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.74 E-value=0.00099 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.74 E-value=0.001 Score=48.48 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+-=+++++|++|+|||||++.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445789999999999999999998
No 429
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.72 E-value=0.0017 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...-.+++.|++|+|||++++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455699999999999999999987
No 430
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0015 Score=49.53 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
++++|++|+|||||++.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 79999999999999999987
No 431
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.68 E-value=0.0014 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++++|++||||||+.+.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 432
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.0013 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999877
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.66 E-value=0.0012 Score=46.94 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033075 20 VLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 20 i~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++|++|||||||++.+..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999874
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0018 Score=42.94 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+...|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999875
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.61 E-value=0.0029 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
....+++++|++|+||||+.+.+..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4456899999999999999998765
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.60 E-value=0.0015 Score=42.52 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033075 19 HVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
-+++.|++|+|||++++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 437
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0025 Score=46.35 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|..+-.+..-.+++.|+||+|||+|++.+..
T Consensus 206 ~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 206 KFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34443345567899999999999999999987
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.53 E-value=0.0016 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356799999999999999999987
No 439
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.53 E-value=0.0062 Score=44.54 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=40.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhhc---------------cCCCCCCCCCCcCCcceEEE--E--EEE-CC--eEEE
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY---------------SNVEGLPPDRIVPTVGLNIG--R--IEV-SN--SKLV 71 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~~~---------------~~~~~~~~~~~~~t~~~~~~--~--~~~-~~--~~~~ 71 (128)
.++..=|.++|+.++|||+|+|.++... ...+.-.+.....|.|+..- . +.. .+ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3455667799999999999999775421 11111122334457776532 1 112 22 6799
Q ss_pred EEeCCCCc
Q 033075 72 FWDLGGQP 79 (128)
Q Consensus 72 ~~D~~g~~ 79 (128)
+.||.|..
T Consensus 144 llDTEG~~ 151 (457)
T 4ido_A 144 LMDTQGTF 151 (457)
T ss_dssp EEEECCBT
T ss_pred EEeccCCC
Confidence 99999944
No 440
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0028 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+|..+-.+..--+++.|+||+|||+|++.+..
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 44444445567899999999999999999987
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.52 E-value=0.0016 Score=43.32 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=18.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..-|++.|++||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999876
No 442
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0028 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++.|++|+||||+++.+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999977
No 443
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.002 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-+++.|++|+|||++++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677779999999999999987
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.51 E-value=0.0016 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999886
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.49 E-value=0.0019 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
....-|+++|.+||||||+.+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455688999999999999999876
No 446
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.003 Score=45.85 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 14 ~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+..--+++.|+||+|||+|++.+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455699999999999999999987
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.49 E-value=0.0019 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|++.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999966
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.003 Score=43.93 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++.|++|+|||++++.+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999976
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.49 E-value=0.0023 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998766
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0022 Score=44.76 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++.|++|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999887
No 451
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.48 E-value=0.0011 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..-|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999876
No 452
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.47 E-value=0.0024 Score=45.66 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
++.-.++++|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455789999999999999999986
No 453
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.47 E-value=0.0026 Score=42.41 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 454
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.46 E-value=0.0025 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-=+++++|++|+|||||++.+..
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 33789999999999999999987
No 455
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.45 E-value=0.0023 Score=39.24 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.....+++.|++|+|||++++.+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999987
No 456
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.003 Score=45.53 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+|..+-.+..--+++.|+||+|||.|++.+.+
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 344444445567899999999999999999987
No 457
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.41 E-value=0.0011 Score=52.57 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999997
No 458
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.41 E-value=0.0021 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999987
No 459
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.40 E-value=0.0021 Score=44.37 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.-.++++|++|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 447889999999999999998763
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0024 Score=41.60 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++|++|+||||++..+..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 357889999999999999865
No 461
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0022 Score=42.28 Aligned_cols=21 Identities=29% Similarity=0.293 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-+++.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.37 E-value=0.0016 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+...|++.|.+||||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999877
No 463
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.36 E-value=0.0037 Score=48.28 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.7
Q ss_pred HHHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 6 ~~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
..+...+..+..-.++++|++|+|||++++.+...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34444555566778999999999999999999874
No 464
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.36 E-value=0.0031 Score=43.11 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 465
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.0024 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999887
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.33 E-value=0.0026 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
..|+++|++||||||+...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999773
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.30 E-value=0.0028 Score=43.21 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.30 E-value=0.0028 Score=43.99 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.--++++|++|+||||++..+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 346889999999999999998763
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.29 E-value=0.0027 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.-|+|.|++|||||||...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.28 E-value=0.0025 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+---+.++|++|+|||||++.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344678999999999999999987
No 471
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.27 E-value=0.0036 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.-|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.24 E-value=0.003 Score=44.36 Aligned_cols=21 Identities=38% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++.|++|+|||++++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.23 E-value=0.0026 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 033075 18 FHVLILGIDKAGKTTLLEKL 37 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l 37 (128)
=-++++|++|||||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999995
No 474
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.23 E-value=0.0027 Score=41.74 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+-.+++.|++|+|||+++..+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999888876
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.23 E-value=0.0031 Score=41.25 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...++++|++|+|||+|...+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999976
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0039 Score=41.35 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
..|++.|..||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.19 E-value=0.0019 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
..+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999999873
No 478
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.19 E-value=0.0058 Score=47.14 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+...+..+..-.++++|++|+|||++++.+...
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3444445566778999999999999999999873
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.17 E-value=0.0033 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999987
No 480
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0062 Score=44.29 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=25.5
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|..+-.+..--+++.|+||+|||+|++.+..
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 34444445567899999999999999999987
No 481
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0052 Score=45.05 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 8 ~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.|..+--+..--|++.|+||+|||+|++.+..
T Consensus 234 ~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 234 RFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp HHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 44444445667899999999999999999987
No 482
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.14 E-value=0.0038 Score=40.64 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999876
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.12 E-value=0.0045 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999987
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.12 E-value=0.0024 Score=47.83 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
+...++++|.+|||||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567899999999999999999873
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.11 E-value=0.0036 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.++++|++|+|||||++.+..
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 679999999999999999986
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.10 E-value=0.0043 Score=40.80 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-|++.|.+||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45688999999999999999876
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.09 E-value=0.007 Score=42.40 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 488
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0076 Score=41.27 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.+++.|++|+|||++++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999976
No 489
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.08 E-value=0.0039 Score=43.65 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=17.1
Q ss_pred EEEcCCCCCHHHHHHHHHh
Q 033075 21 LILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 21 ~l~G~~~~GKTsl~~~l~~ 39 (128)
+++|++|+|||||+..+..
T Consensus 27 ~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7999999999999998744
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.07 E-value=0.0038 Score=46.59 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 17 ~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.-.++++|++|+|||||++.+...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999773
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.06 E-value=0.0054 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-|+++|++|||||+|...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 478899999999999999987
No 492
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.05 E-value=0.0031 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033075 19 HVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 19 ki~l~G~~~~GKTsl~~~l~~ 39 (128)
-.+++|++|+|||+|+..+..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 568999999999999999975
No 493
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.04 E-value=0.0036 Score=43.82 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999987
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.03 E-value=0.0048 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999999987
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.02 E-value=0.0046 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
--+++.|++|+|||||++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 4688999999999999999986
No 496
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0044 Score=43.26 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.1
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 12 ~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
....+.-.+.+.|++|+|||++++.+...
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33456678899999999999999999873
No 497
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.01 E-value=0.0042 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 15 ~~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..-.++++|++|+|||+|++.+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4455799999999999999999987
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.01 E-value=0.0054 Score=41.00 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033075 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 16 ~~~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
+..-|++.|.+||||||+++.+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999876
No 499
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.00 E-value=0.005 Score=48.25 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.1
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHHhh
Q 033075 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (128)
Q Consensus 7 ~~~~~~~~~~~~ki~l~G~~~~GKTsl~~~l~~~ 40 (128)
.+...+..+..-.++++|++|+|||++++.+...
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3334444455667899999999999999999873
No 500
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.98 E-value=0.0067 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033075 18 FHVLILGIDKAGKTTLLEKLKS 39 (128)
Q Consensus 18 ~ki~l~G~~~~GKTsl~~~l~~ 39 (128)
.-++++|+++||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578899999999999999987
Done!