Query 033076
Match_columns 128
No_of_seqs 120 out of 1026
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 7.5E-49 2.6E-53 296.6 14.1 126 1-127 9-134 (167)
2 1x6o_A Eukaryotic initiation f 100.0 2.3E-45 7.9E-50 279.0 13.5 125 1-126 9-141 (174)
3 3er0_A Eukaryotic translation 100.0 3.4E-45 1.2E-49 276.5 9.7 116 1-120 11-128 (167)
4 3cpf_A Eukaryotic translation 100.0 3.3E-43 1.1E-47 258.3 13.4 108 16-125 1-108 (138)
5 1bkb_A Translation initiation 100.0 3E-41 1E-45 247.1 15.0 100 19-119 6-105 (136)
6 1iz6_A Initiation factor 5A; S 100.0 2.4E-41 8.4E-46 248.4 13.7 102 17-119 2-103 (138)
7 2eif_A IF-5A, protein (eukaryo 100.0 2.6E-40 8.8E-45 242.3 15.7 102 16-118 5-106 (136)
8 3a5z_B EF-P, elongation factor 100.0 2.3E-37 7.9E-42 237.9 13.6 99 17-117 2-100 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 6E-37 2.1E-41 234.3 13.9 95 22-118 2-96 (184)
10 1yby_A Translation elongation 100.0 3.4E-36 1.2E-40 235.1 14.0 101 16-118 26-126 (215)
11 3tre_A EF-P, elongation factor 100.0 5.6E-36 1.9E-40 230.2 14.3 95 21-117 6-100 (191)
12 3oyy_A EF-P, elongation factor 100.0 2.9E-35 1E-39 226.2 14.0 95 21-118 4-98 (191)
13 1khi_A HEX1; membrane sealing, 100.0 4.1E-29 1.4E-33 189.5 12.7 109 11-127 24-141 (176)
14 3r8s_P 50S ribosomal protein L 71.6 9.2 0.00032 26.6 5.5 54 22-77 14-75 (114)
15 2ftc_B Mitochondrial ribosomal 68.7 20 0.00068 25.5 6.9 54 26-83 50-111 (136)
16 3v2d_T 50S ribosomal protein L 67.2 13 0.00044 27.0 5.6 54 22-77 17-78 (146)
17 2ftc_K 39S ribosomal protein L 62.5 25 0.00087 23.7 6.1 28 58-85 40-71 (98)
18 3qx1_A FAS-associated factor 1 56.1 13 0.00043 23.5 3.6 31 53-84 3-33 (84)
19 1ed7_A Chitinase A1, (CHBD-CHI 52.6 4.6 0.00016 23.2 0.9 24 27-50 8-31 (45)
20 1k0h_A Gpfii; twisted beta-san 51.7 3.2 0.00011 28.7 0.1 33 23-58 71-103 (117)
21 2zjr_M 50S ribosomal protein L 51.6 18 0.00061 26.7 4.1 54 22-77 22-83 (166)
22 1rl2_A Protein (ribosomal prot 50.3 21 0.00073 25.3 4.3 61 18-82 41-123 (137)
23 1at0_A 17-hedgehog; developmen 49.2 22 0.00074 24.8 4.2 30 19-48 84-119 (145)
24 2f9h_A PTS system, IIA compone 47.2 18 0.00063 25.4 3.5 21 25-45 53-73 (129)
25 1giy_D 50S ribosomal protein L 46.7 41 0.0014 24.9 5.5 62 18-83 41-124 (178)
26 2fhd_A RAD9 homolog, DNA repai 39.8 15 0.00052 26.8 2.1 42 20-61 57-109 (153)
27 3gs9_A Protein GP18; NP_465809 38.6 48 0.0016 26.3 5.1 40 26-67 55-94 (342)
28 2z14_A EF-hand domain-containi 36.8 31 0.0011 24.2 3.3 25 22-46 84-108 (133)
29 1mvg_A Liver basic fatty acid 36.1 61 0.0021 22.0 4.7 47 59-105 46-92 (125)
30 1p6p_A Fatty acid-binding prot 34.0 85 0.0029 21.2 5.2 47 59-105 46-92 (125)
31 1p9k_A ORF, hypothetical prote 32.5 42 0.0014 20.7 3.2 19 25-43 60-78 (79)
32 2k50_A Replication factor A re 31.2 1.1E+02 0.0037 19.8 6.6 52 22-77 8-63 (115)
33 1ifc_A Intestinal fatty acid b 30.7 65 0.0022 22.1 4.2 45 59-104 47-92 (132)
34 1o8v_A Fatty acid binding prot 30.2 71 0.0024 21.9 4.3 46 59-104 50-95 (134)
35 1ggl_A Protein (cellular retin 30.0 82 0.0028 21.6 4.6 47 59-105 48-96 (134)
36 3j21_B 50S ribosomal protein L 29.2 55 0.0019 25.4 3.9 62 17-82 67-150 (239)
37 1mdc_A Insect fatty acid bindi 29.2 78 0.0027 21.7 4.4 47 59-105 48-94 (132)
38 1b56_A Fatty acid binding prot 28.6 74 0.0025 21.9 4.2 45 59-104 51-96 (135)
39 2lcj_A PAB POLC intein; hydrol 28.3 80 0.0027 22.5 4.5 16 21-36 105-120 (185)
40 1ftp_A Muscle fatty acid bindi 28.2 95 0.0032 21.2 4.7 47 59-105 50-97 (133)
41 2qo4_A Liver-basic fatty acid 28.0 59 0.002 22.1 3.6 49 59-107 47-95 (126)
42 3ppt_A Sodium-calcium exchange 27.9 74 0.0025 21.9 4.1 47 59-105 48-94 (133)
43 1y43_B Aspergillopepsin II hea 27.9 1.3E+02 0.0045 21.9 5.6 45 20-77 50-94 (173)
44 4a1y_A Myelin P2 protein; tran 27.6 80 0.0027 21.7 4.2 45 60-104 51-95 (133)
45 3isy_A Bsupi, intracellular pr 27.4 1.5E+02 0.0051 20.3 6.6 54 43-99 9-63 (120)
46 3rby_A Uncharacterized protein 27.3 46 0.0016 25.9 3.1 27 20-46 218-244 (245)
47 3v2d_D 50S ribosomal protein L 27.3 71 0.0024 25.3 4.3 31 49-82 148-184 (276)
48 2exd_A NFED short homolog; mem 27.3 90 0.0031 19.6 4.1 34 25-62 25-58 (80)
49 2pp6_A Gifsy-2 prophage ATP-bi 26.5 80 0.0027 21.4 3.8 35 15-49 50-86 (102)
50 2rcq_A CRBP-II, retinol-bindin 26.3 88 0.003 21.7 4.3 45 59-104 52-99 (141)
51 2f73_A L-FABP, fatty acid-bind 26.1 77 0.0026 22.4 4.0 47 59-105 69-116 (149)
52 1o6a_A Putative flagellar moto 25.4 89 0.0031 20.2 3.9 19 24-42 37-58 (96)
53 4a60_A Fatty acid-binding prot 25.3 84 0.0029 22.4 4.1 46 60-105 72-117 (154)
54 1fdq_A Fatty acid-binding prot 24.9 64 0.0022 22.0 3.3 46 59-105 48-94 (131)
55 1vyf_A SM14, 14 kDa fatty acid 24.7 90 0.0031 21.4 4.0 44 60-104 51-96 (135)
56 3k3s_A Altronate hydrolase; st 24.1 75 0.0026 21.6 3.4 42 22-71 35-76 (105)
57 2a0a_A DER F 13; beta barrel, 23.9 90 0.0031 21.3 3.9 46 60-105 49-95 (131)
58 1crb_A Cellular retinol bindin 23.9 88 0.003 21.4 3.8 45 59-104 48-95 (134)
59 3q6l_A Fatty acid-binding prot 23.5 90 0.0031 22.1 3.9 46 60-105 70-115 (152)
60 2ifr_A Scytalidopepsin B; enzy 23.3 2.1E+02 0.0071 21.4 6.1 45 20-77 76-120 (206)
61 3rsw_A Fatty acid-binding prot 22.9 92 0.0031 22.3 3.9 46 60-105 75-120 (158)
62 2lba_A BABP protein; ileal bIl 22.8 98 0.0033 21.4 3.9 46 60-105 52-98 (136)
63 3od3_A Blue copper oxidase CUE 22.7 90 0.0031 26.1 4.3 51 28-86 181-231 (488)
64 3p6d_A Fatty acid-binding prot 22.7 98 0.0034 21.5 3.9 46 60-105 57-102 (139)
65 3frn_A Flagellar protein FLGA; 22.7 73 0.0025 25.2 3.5 29 59-87 242-270 (278)
66 1eal_A Gastrotropin, ileal lip 22.7 1.8E+02 0.0062 19.6 5.4 46 60-105 47-93 (127)
67 2z0t_A Putative uncharacterize 21.7 81 0.0028 21.3 3.2 30 16-45 18-54 (109)
68 3vg7_A Fatty acid-binding prot 21.4 1.1E+02 0.0036 21.1 3.9 47 59-105 50-97 (132)
69 1lpj_A Retinol-binding protein 21.3 1.1E+02 0.0037 20.9 3.9 45 59-104 48-95 (133)
70 1vq8_A 50S ribosomal protein L 21.2 82 0.0028 24.4 3.5 61 18-82 66-148 (240)
71 1o9y_A HRCQ2; secretory protei 20.9 71 0.0024 20.2 2.6 19 24-42 33-54 (84)
72 1ix5_A FKBP; ppiase, isomerase 20.7 69 0.0024 22.3 2.8 20 26-45 103-122 (151)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=7.5e-49 Score=296.55 Aligned_cols=126 Identities=79% Similarity=1.264 Sum_probs=105.7
Q ss_pred CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (128)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ 80 (128)
|||.+++|+ +++|++|.||||++++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+|+++
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076 81 CDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127 (128)
Q Consensus 81 ve~~~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~ 127 (128)
+++|+|++++|||||+|++++|+|||++||||++|+||++++|.++|
T Consensus 88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i 134 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQM 134 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHH
T ss_pred EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHH
Confidence 99999999999999997655899999999999999999875676554
No 2
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=2.3e-45 Score=279.04 Aligned_cols=125 Identities=48% Similarity=0.893 Sum_probs=99.4
Q ss_pred CCcccc--ccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCC
Q 033076 1 MSDEEH--HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (128)
Q Consensus 1 ~~~~~~--~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~ 78 (128)
|||..+ +|+ +++|++|.||++++++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+++
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 444433 899 99999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CeeecceEEEeeeEEEEecCC------ceEEEecCCCCeEEeeeCCCCcchhcc
Q 033076 79 HNCDVPHVTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDENLLSQ 126 (128)
Q Consensus 79 d~ve~~~ve~~~~qylY~dgd------~~~~fMD~etyeq~~i~lp~~~~l~~k 126 (128)
++|++|+|++++|||||+|+| |+|+|||++||+|++|++|++..|.++
T Consensus 88 ~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~ 141 (174)
T 1x6o_A 88 HNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQ 141 (174)
T ss_dssp SEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHH
T ss_pred CEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEEEeeCCchhhHHHH
Confidence 999999999999999999988 689999999999999998865246443
No 3
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-45 Score=276.54 Aligned_cols=116 Identities=59% Similarity=1.032 Sum_probs=101.2
Q ss_pred CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (128)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ 80 (128)
|||.+++|+ +++|++|.||||+|++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+|+++
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 889999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEEeeeEEEEecCCceEEEec--CCCCeEEeeeCCCC
Q 033076 81 CDVPHVTRTDYQLIDISEDGFVSLLT--ENGNTKDDLRLPTD 120 (128)
Q Consensus 81 ve~~~ve~~~~qylY~dgd~~~~fMD--~etyeq~~i~lp~~ 120 (128)
|++|+|++++|||||+||+ +|+||| .++||| ++||++
T Consensus 90 ve~~~ver~~~QyLY~dg~-~~~FMD~~~etyeq--i~l~~~ 128 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDIDDG-FLSLMNMDGDTKDD--VKAPEG 128 (167)
T ss_dssp EEECCCCEEEEECCCCTTT-TCCCCCSSSCCCSC--CCCCCS
T ss_pred cccceEEEeeEEEEEEcCC-EEEEEeCCCCeeEE--EEcCHH
Confidence 9999999999999999987 799999 889999 666653
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=258.25 Aligned_cols=108 Identities=61% Similarity=1.080 Sum_probs=97.9
Q ss_pred cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (128)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY 95 (128)
+|.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|++++++|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ecCCceEEEecCCCCeEEeeeCCCCcchhc
Q 033076 96 ISEDGFVSLLTENGNTKDDLRLPTDENLLS 125 (128)
Q Consensus 96 ~dgd~~~~fMD~etyeq~~i~lp~~~~l~~ 125 (128)
+||+ +|+|||+|||||++|++|++ .|.+
T Consensus 81 ~dg~-~~~fMD~etyeq~~l~l~~~-~lgd 108 (138)
T 3cpf_A 81 IQDG-YLSLLQDSGEVREDLRLPEG-DLGK 108 (138)
T ss_dssp EETT-EEEEECTTSCEECCSBCCSH-HHHH
T ss_pred ecCC-EEEEEcCCCCeEeeecCCHH-HHHH
Confidence 9987 89999999999999989963 3443
No 5
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3e-41 Score=247.10 Aligned_cols=100 Identities=32% Similarity=0.597 Sum_probs=98.0
Q ss_pred eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecC
Q 033076 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE 98 (128)
Q Consensus 19 t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dg 98 (128)
||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999998
Q ss_pred CceEEEecCCCCeEEeeeCCC
Q 033076 99 DGFVSLLTENGNTKDDLRLPT 119 (128)
Q Consensus 99 d~~~~fMD~etyeq~~i~lp~ 119 (128)
+ .|+|||+|||||++|+.|.
T Consensus 86 ~-~~~fMD~etyeq~~l~~~~ 105 (136)
T 1bkb_A 86 D-VIQLMDMRDYKTIEVPMKY 105 (136)
T ss_dssp S-EEEEEETTTCCEEEEEGGG
T ss_pred C-EEEEEeCCCCeEEEecccc
Confidence 7 8999999999999999886
No 6
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=2.4e-41 Score=248.37 Aligned_cols=102 Identities=28% Similarity=0.532 Sum_probs=99.5
Q ss_pred ceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe
Q 033076 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (128)
Q Consensus 17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~ 96 (128)
|.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|++++++++|+|++++|||||.
T Consensus 2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~ 81 (138)
T 1iz6_A 2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI 81 (138)
T ss_dssp CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCCCeEEeeeCCC
Q 033076 97 SEDGFVSLLTENGNTKDDLRLPT 119 (128)
Q Consensus 97 dgd~~~~fMD~etyeq~~i~lp~ 119 (128)
||+ .|+|||++||||++|++|+
T Consensus 82 dg~-~~~fMD~etyeq~~l~~~~ 103 (138)
T 1iz6_A 82 TPD-TVQIMDMETYETFEVPIDT 103 (138)
T ss_dssp CSS-EEEEECTTTCCEEEEEHHH
T ss_pred CCC-EEEEEeCCCCceEEeeCCH
Confidence 988 8999999999999998885
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=2.6e-40 Score=242.33 Aligned_cols=102 Identities=34% Similarity=0.602 Sum_probs=99.4
Q ss_pred cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (128)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY 95 (128)
+|.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.|+++++||||
T Consensus 5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly 84 (136)
T 2eif_A 5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA 84 (136)
T ss_dssp CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEecCCCCeEEeeeCC
Q 033076 96 ISEDGFVSLLTENGNTKDDLRLP 118 (128)
Q Consensus 96 ~dgd~~~~fMD~etyeq~~i~lp 118 (128)
.||+ .|+|||+|||||++|+.|
T Consensus 85 ~dg~-~~~fMD~etyeq~~l~~~ 106 (136)
T 2eif_A 85 IMGD-MVQIMDLQTYETLELPIP 106 (136)
T ss_dssp EETT-EEEEEETTTCCEEEEECC
T ss_pred ecCC-EEEEEeCCCceEEEecCC
Confidence 9988 899999999999999998
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=2.3e-37 Score=237.93 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=92.0
Q ss_pred ceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe
Q 033076 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (128)
Q Consensus 17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~ 96 (128)
|+-+++++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++++++.|+|++++|||||.
T Consensus 2 ~~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~ 80 (191)
T 3a5z_B 2 SHMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYN 80 (191)
T ss_dssp ----CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEE
T ss_pred CccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEe
Confidence 344779999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCCCeEEeeeC
Q 033076 97 SEDGFVSLLTENGNTKDDLRL 117 (128)
Q Consensus 97 dgd~~~~fMD~etyeq~~i~l 117 (128)
||| .|+|||+|||||+.|+.
T Consensus 81 dgd-~~~FMD~etyeQ~~l~~ 100 (191)
T 3a5z_B 81 DGE-FWHFMNNETFEQLSADA 100 (191)
T ss_dssp CSS-CEEEECTTTCCEEEECH
T ss_pred CCC-EEEEeeCCCCeEEEccH
Confidence 998 69999999999977664
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=6e-37 Score=234.35 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=91.9
Q ss_pred EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCce
Q 033076 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101 (128)
Q Consensus 22 i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~ 101 (128)
+++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++++++.|+|++++|||||.||| .
T Consensus 2 i~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd-~ 79 (184)
T 1ueb_A 2 ISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGE-E 79 (184)
T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETT-E
T ss_pred cchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCC-E
Confidence 7899999999999999999999999999999 8999999999999999999999999999999999999999999998 7
Q ss_pred EEEecCCCCeEEeeeCC
Q 033076 102 VSLLTENGNTKDDLRLP 118 (128)
Q Consensus 102 ~~fMD~etyeq~~i~lp 118 (128)
|+|||+|||||+.|+.+
T Consensus 80 ~~FMD~etyeq~~l~~~ 96 (184)
T 1ueb_A 80 MVFMDLETYEQFAVPRS 96 (184)
T ss_dssp EEEEETTTCCEEEEEGG
T ss_pred EEEeeCCCceeEEcCHH
Confidence 99999999999877754
No 10
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=3.4e-36 Score=235.06 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=90.8
Q ss_pred cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (128)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY 95 (128)
.+...++++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+|++++|||||
T Consensus 26 ~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY 104 (215)
T 1yby_A 26 KKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLY 104 (215)
T ss_dssp -----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEE
T ss_pred hhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEE
Confidence 3444568999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred ecCCceEEEecCCCCeEEeeeCC
Q 033076 96 ISEDGFVSLLTENGNTKDDLRLP 118 (128)
Q Consensus 96 ~dgd~~~~fMD~etyeq~~i~lp 118 (128)
.||| .|+|||+|||||+.|+.+
T Consensus 105 ~Dgd-~y~FMD~ETyEQi~l~~~ 126 (215)
T 1yby_A 105 NDGD-LYYFMDTETFEQLPLGKD 126 (215)
T ss_dssp EETT-EEEEECTTTCCEEEEEHH
T ss_pred eCCC-EEEEccCCCCeeEEecHH
Confidence 9998 799999999999887754
No 11
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=5.6e-36 Score=230.19 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=91.6
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (128)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~ 100 (128)
++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||+
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd- 83 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE- 83 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS-
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC-
Confidence 58999999999999999999999999999999 8999999999999999999999999999999999999999999998
Q ss_pred eEEEecCCCCeEEeeeC
Q 033076 101 FVSLLTENGNTKDDLRL 117 (128)
Q Consensus 101 ~~~fMD~etyeq~~i~l 117 (128)
.|+|||+|||||+.|+.
T Consensus 84 ~~~FMD~etyEq~~l~~ 100 (191)
T 3tre_A 84 FWHFMTSENYEQHAASK 100 (191)
T ss_dssp CEEEEESSSCCEEEECH
T ss_pred cEEEccCCchHheecch
Confidence 79999999999977654
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.9e-35 Score=226.20 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=90.9
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (128)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~ 100 (128)
++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|+++++||||.||+
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd- 81 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADP- 81 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSS-
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCC-
Confidence 58999999999999999999999999999999 6899999999999999999999999999999999999999999998
Q ss_pred eEEEecCCCCeEEeeeCC
Q 033076 101 FVSLLTENGNTKDDLRLP 118 (128)
Q Consensus 101 ~~~fMD~etyeq~~i~lp 118 (128)
.|+||| |||||+.|+.+
T Consensus 82 ~~~FMD-etyEq~~l~~~ 98 (191)
T 3oyy_A 82 LYVFMD-SEFNQYEIEKD 98 (191)
T ss_dssp SEEEEE-TTCCEEEECGG
T ss_pred EEEEEe-cChhheeCChH
Confidence 799999 99999777653
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.96 E-value=4.1e-29 Score=189.51 Aligned_cols=109 Identities=28% Similarity=0.561 Sum_probs=100.0
Q ss_pred ccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEeeCCC--------Cee
Q 033076 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC 81 (128)
Q Consensus 11 ~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~-kpGK~G~A~v~~k~knl~TG~~~e~t~~s~--------d~v 81 (128)
.++|++|.|++++++.||+|.+|+|+|+||+|++++++ ||||| ++.+.+||||+++|...+++ +++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm 98 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM 98 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence 58999999999999999999999999999999999999 89998 89999999999999999998 899
Q ss_pred ecceEEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076 82 DVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127 (128)
Q Consensus 82 e~~~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~ 127 (128)
++|+|+ +||+|.+++ |++++||+++|+.++|+||+..+|+++|
T Consensus 99 ~VPvVk--~yQlldI~d-g~lsLMd~~G~~k~dl~lp~~~~l~~~i 141 (176)
T 1khi_A 99 LGPVFK--QYRVLDMQD-GSIVAMTETGDVKQNLPVIDQSSLWNRL 141 (176)
T ss_dssp EEECCE--EEEEEEEET-TEEEEECTTCCEEEEEEBCCSTTHHHHH
T ss_pred ccceeE--EEEEEEEcC-CeEEEEeCCCCEEeeeEccchHHHHHHH
Confidence 999996 999999975 4999999999999999999855677665
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=71.56 E-value=9.2 Score=26.59 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=36.0
Q ss_pred EecccccCceEEEEC-----CeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEeeCC
Q 033076 22 QQAGTIRKNGYIVIK-----GRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 22 i~~~~ikkG~~i~~~-----g~p~~Vve~~~~---kpGK~G~A~v~~k~knl~TG~~~e~t~~s 77 (128)
....++++|++|.+. |....+.-++-+ +-|+ | .--.+.+|++..|.=+|.+|+-
T Consensus 14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G-~~~tftvRki~~gvGVEr~fpl 75 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-G-LHSAFTVRKISNGEGVERVFQT 75 (114)
T ss_dssp SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-G-GGCEEEEEEEETTEEEEEEEET
T ss_pred cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-C-CCeEEEEEEecCCccEEEEEec
Confidence 456789999988763 655544333322 1133 2 2235789999999999999976
No 15
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=68.72 E-value=20 Score=25.47 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=27.8
Q ss_pred cccCceEEEECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEeeCCCCeeec
Q 033076 26 TIRKNGYIVIKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (128)
Q Consensus 26 ~ikkG~~i~~~g~p--~~Vve~~~~kpGK~G~------A~v~~k~knl~TG~~~e~t~~s~d~ve~ 83 (128)
+++.|+++-+..-| ..|-.++. +||++|+ +..++..| .|+..-.+++|++.-.+
T Consensus 50 ~i~~GN~lpL~~iP~Gt~IhNIE~-~pG~gg~laRsAGt~a~ii~k---e~~~~~vrLPSGe~r~v 111 (136)
T 2ftc_B 50 AAREGDAHPLGALPVGTLINNVES-EPGRGAQYIRAAGTCGVLLRK---VNGTAIIQLPSKRQMQV 111 (136)
T ss_pred ccCcCcEEEecccCCCCEEEEEec-cCCCCcEEEEeCCCeEEEEEe---cCCEEEEECCCCCeEEE
Confidence 44455555554443 12222222 7887431 44455555 46666677777766543
No 16
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=67.22 E-value=13 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=35.0
Q ss_pred EecccccCceEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEeeCC
Q 033076 22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 22 i~~~~ikkG~~i~~-----~g~p~~Vve~~~~---kpGK~G~A~v~~k~knl~TG~~~e~t~~s 77 (128)
....++++|++|.+ +|.-..+--++-+ .-|+ |- --.+.+|++..|-=+|.+|+-
T Consensus 17 ~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-Gl-~~tFtVRkis~gvGVEr~Fpl 78 (146)
T 3v2d_T 17 TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-GF-NTTFTVRKVSYGVGVERIFPL 78 (146)
T ss_dssp CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-GG-GCEEEEEEEETTEEEEEEEET
T ss_pred ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-CC-CeEEEEEEecCCccEEEEEec
Confidence 45668999998765 4554444333222 1133 22 225789999999999999976
No 17
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=62.50 E-value=25 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.4
Q ss_pred EEEEEEEccCCcEEEEeeCC----CCeeecce
Q 033076 58 CHFVGIDIFNGKKLEDIVPS----SHNCDVPH 85 (128)
Q Consensus 58 v~~k~knl~TG~~~e~t~~s----~d~ve~~~ 85 (128)
-.+.+|++..|.=+|.+|+- -+++|+..
T Consensus 40 ~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 40 ATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred cEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 46899999999999999965 44444443
No 18
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=56.05 E-value=13 Score=23.47 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=23.5
Q ss_pred CcccEEEEEEEEccCCcEEEEeeCCCCeeecc
Q 033076 53 HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (128)
Q Consensus 53 ~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~ 84 (128)
|+...+++.+| +-+|+.+..+|++++++..+
T Consensus 3 ~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~v 33 (84)
T 3qx1_A 3 HMEPVSKLRIR-TPSGEFLERRFLASNKLQIV 33 (84)
T ss_dssp -CCCEEEEEEE-CTTSCEEEEEEETTSBHHHH
T ss_pred CCCCeEEEEEE-CCCCCEEEEEeCCCCCHHHH
Confidence 34456666666 67899999999999999743
No 19
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=52.60 E-value=4.6 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.0
Q ss_pred ccCceEEEECCeeEEEEEeeEecC
Q 033076 27 IRKNGYIVIKGRPCKVVEVSTSKT 50 (128)
Q Consensus 27 ikkG~~i~~~g~p~~Vve~~~~kp 50 (128)
-+.|+.+.++|..|+++......|
T Consensus 8 Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 8 YTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp ECTTCCEEETTEEECBCSCEEECT
T ss_pred EcCCCEEEECCeEEEEEecCcCcC
Confidence 478999999999999997777644
No 20
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=51.72 E-value=3.2 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.5
Q ss_pred ecccccCceEEEECCeeEEEEEeeEecCCCCcccEE
Q 033076 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58 (128)
Q Consensus 23 ~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v 58 (128)
.+..+++|+.|.++|+.|.|.++ .|.-+|.+.+
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~v---~PDg~G~~~L 103 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDRV---SPDDGGSCHL 103 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCCC---CSSSCCCTTC
T ss_pred ccCCCCCCCEEEECCeEEEEeee---ccCCCCeEEE
Confidence 45678999999999999999874 7754465543
No 21
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=51.60 E-value=18 Score=26.72 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred EecccccCceEEEEC-----CeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEeeCC
Q 033076 22 QQAGTIRKNGYIVIK-----GRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 22 i~~~~ikkG~~i~~~-----g~p~~Vve~~~~---kpGK~G~A~v~~k~knl~TG~~~e~t~~s 77 (128)
....+|++|++|.+. |...++--++-+ +-|+ |- --.+.+|++..|-=+|.+|+-
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-Gl-~sTFTVRkis~GvGVER~Fpl 83 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-GS-RKSFTVRKISFGEGVERVFPF 83 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-GG-GCEEEEEEEETTEEEEEEEET
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-CC-CcEEEEEEecCCeeEEEEEec
Confidence 356789999998764 443333222221 2233 22 235889999999999999976
No 22
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=50.27 E-value=21 Score=25.31 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=35.2
Q ss_pred eeEEEecccccCceEEE--------------ECCee--EEEEEeeEecCCCCc------ccEEEEEEEEccCCcEEEEee
Q 033076 18 KTFPQQAGTIRKNGYIV--------------IKGRP--CKVVEVSTSKTGKHG------HAKCHFVGIDIFNGKKLEDIV 75 (128)
Q Consensus 18 ~t~~i~~~~ikkG~~i~--------------~~g~p--~~Vve~~~~kpGK~G------~A~v~~k~knl~TG~~~e~t~ 75 (128)
..|.+.+..++.|++|. +..-| ..|-.++ .+||++| ++..++-.| .|+..-.++
T Consensus 41 k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~IhNIE-~~pG~gg~laRsAGt~a~ii~k---e~~~~~vrL 116 (137)
T 1rl2_A 41 KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGK---EGKYVIVRL 116 (137)
T ss_dssp EEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGSCTTCEEESEE-SSTTSCEEESSSSSCCEEEEEE---ETTEEEEEC
T ss_pred EEEEEecccCccceEEEECCccccccCCEeehhhCCCCCEEEEEE-ccCCCCcEEEEeCCCeEEEEEE---cCCEEEEEC
Confidence 56666666666666654 33332 2222222 2788853 255666666 377777888
Q ss_pred CCCCeee
Q 033076 76 PSSHNCD 82 (128)
Q Consensus 76 ~s~d~ve 82 (128)
||++.-.
T Consensus 117 PSGe~r~ 123 (137)
T 1rl2_A 117 ASGEVRM 123 (137)
T ss_dssp TTSCEEE
T ss_pred CCCCeEE
Confidence 8887544
No 23
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=49.21 E-value=22 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=22.4
Q ss_pred eEEEecccccCceEEEE-CC-----eeEEEEEeeEe
Q 033076 19 TFPQQAGTIRKNGYIVI-KG-----RPCKVVEVSTS 48 (128)
Q Consensus 19 t~~i~~~~ikkG~~i~~-~g-----~p~~Vve~~~~ 48 (128)
.-.+.|.+|++|+.|.. +| .|-+|++++..
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 35689999999998764 44 47778777665
No 24
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=47.23 E-value=18 Score=25.40 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=19.7
Q ss_pred ccccCceEEEECCeeEEEEEe
Q 033076 25 GTIRKNGYIVIKGRPCKVVEV 45 (128)
Q Consensus 25 ~~ikkG~~i~~~g~p~~Vve~ 45 (128)
.+|++|+.+.+++.-|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999977
No 25
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=46.70 E-value=41 Score=24.94 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=35.2
Q ss_pred eeEEEecccccCceEEEEC--------------Cee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEee
Q 033076 18 KTFPQQAGTIRKNGYIVIK--------------GRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (128)
Q Consensus 18 ~t~~i~~~~ikkG~~i~~~--------------g~p--~~Vve~~~~kpGK~G~------A~v~~k~knl~TG~~~e~t~ 75 (128)
..|.+....++.|++|... .-| ..|-.++. +||++|+ +..++..+ .|+..-.++
T Consensus 41 ~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~I~NIE~-~pG~gg~laRsAGt~a~ii~k---e~~~~~vrL 116 (178)
T 1giy_D 41 KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIEL-KPGRGGQLVRAAGTSAQVLGK---EGKYVIVRL 116 (178)
T ss_pred EEEEECccCCccccEEEECCCCccccCCCcccccCCCCCEEEeEec-cCCCCeEEEEeCCCeEEEEEe---cCCeEEEEC
Confidence 5677777777777776542 222 12222222 7888432 44455555 466777777
Q ss_pred CCCCeeec
Q 033076 76 PSSHNCDV 83 (128)
Q Consensus 76 ~s~d~ve~ 83 (128)
+|++.-.+
T Consensus 117 PSGe~r~v 124 (178)
T 1giy_D 117 ASGEVRMI 124 (178)
T ss_pred CCCCEEEE
Confidence 88775543
No 26
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=39.84 E-value=15 Score=26.76 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=29.1
Q ss_pred EEEecccccCceEEEECCe---eEEEEEeeEecCC--------CCcccEEEEE
Q 033076 20 FPQQAGTIRKNGYIVIKGR---PCKVVEVSTSKTG--------KHGHAKCHFV 61 (128)
Q Consensus 20 ~~i~~~~ikkG~~i~~~g~---p~~Vve~~~~kpG--------K~G~A~v~~k 61 (128)
-.+..=+||+|+.|.+++- ||.|+.+.+.-++ -+|++.|.++
T Consensus 57 ~~vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~ 109 (153)
T 2fhd_A 57 NQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILA 109 (153)
T ss_dssp TSEEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEE
T ss_pred hhceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEc
Confidence 3456679999999999974 6999988743222 2366666544
No 27
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=38.58 E-value=48 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=31.9
Q ss_pred cccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccC
Q 033076 26 TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67 (128)
Q Consensus 26 ~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~T 67 (128)
-|.++..|.++|+.|+|..++...-| |...+.+.+++++-
T Consensus 55 ~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 55 FLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp CSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred hhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 48999999999999999999776555 35778899998864
No 28
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=36.81 E-value=31 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=23.0
Q ss_pred EecccccCceEEEECCeeEEEEEee
Q 033076 22 QQAGTIRKNGYIVIKGRPCKVVEVS 46 (128)
Q Consensus 22 i~~~~ikkG~~i~~~g~p~~Vve~~ 46 (128)
+...||..|..|.+.|..+.|+++.
T Consensus 84 ~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 84 YTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp CCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred cCHHHcccCCEEEEecEEEEEEeCC
Confidence 5789999999999999999999974
No 29
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=36.06 E-value=61 Score=22.04 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=36.0
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVTK 92 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEEe
Confidence 36677778888899999999999988888777777776433466665
No 30
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=34.04 E-value=85 Score=21.24 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=35.6
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLICK 92 (125)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEEE
Confidence 36667777788889999999999988888887777776433466665
No 31
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=32.49 E-value=42 Score=20.66 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.8
Q ss_pred ccccCceEEEECCeeEEEE
Q 033076 25 GTIRKNGYIVIKGRPCKVV 43 (128)
Q Consensus 25 ~~ikkG~~i~~~g~p~~Vv 43 (128)
..++.|+.|.++|+|+.|+
T Consensus 60 ~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 60 CKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp CCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCEEEECCEEEEEe
Confidence 3578899999999998775
No 32
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=31.19 E-value=1.1e+02 Score=19.79 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=33.2
Q ss_pred EecccccCceEEEECCeeEEEEEeeEec--CCCCc--ccEEEEEEEEccCCcEEEEeeCC
Q 033076 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSK--TGKHG--HAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 22 i~~~~ikkG~~i~~~g~p~~Vve~~~~k--pGK~G--~A~v~~k~knl~TG~~~e~t~~s 77 (128)
...++|++|..+.+ .++|++....+ ..|.| ..+..+.+.| .||.+.=.-|..
T Consensus 8 ~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~ 63 (115)
T 2k50_A 8 DTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTE 63 (115)
T ss_dssp CCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETT
T ss_pred EEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCc
Confidence 46889999988755 56777763222 22335 5677888888 788554444544
No 33
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=30.68 E-value=65 Score=22.06 Aligned_cols=45 Identities=7% Similarity=-0.066 Sum_probs=33.5
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~f 104 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++. +|+ .++.
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~-kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGN-KLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETT-EEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECC-EEEE
Confidence 36677777888888999999999888887777776665 444 5655
No 34
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=30.17 E-value=71 Score=21.93 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=34.4
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~f 104 (128)
.+.++..-+.+..+.+|+.++.++...++-+.++-++.-.++.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 3667788888889999999999998888877777666532335665
No 35
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=29.98 E-value=82 Score=21.62 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=34.5
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecce--EEEeeeEEEEecCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~--ve~~~~qylY~dgd~~~~fM 105 (128)
++.++..-+.+..+.+|+.++.++... ++-+.++-++.-+++.++..
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~~ 96 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCV 96 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEEE
Confidence 356677777888899999999999888 77777776666333356663
No 36
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.22 E-value=55 Score=25.36 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=35.7
Q ss_pred ceeEEEecccccCceEEEE--------------CCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEe
Q 033076 17 SKTFPQQAGTIRKNGYIVI--------------KGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDI 74 (128)
Q Consensus 17 ~~t~~i~~~~ikkG~~i~~--------------~g~p--~~Vve~~~~kpGK~G~------A~v~~k~knl~TG~~~e~t 74 (128)
...|.+.+..++.|++|.. ..-| ..|-.++ .+||++|+ +..++..++ ++..-..
T Consensus 67 ek~YIlApeGl~vGd~I~sG~~a~i~~GN~LPL~~iP~GT~I~NIE-~~pG~gg~laRsAGt~A~ii~k~---~~~~~vr 142 (239)
T 3j21_B 67 IEKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIE-GIPGDGGKYVRAGGTYALVVSRE---PDKVIVQ 142 (239)
T ss_dssp CEEEECCBTTCCTTCEEEESSSSCSSTTCEEETTTSCTTCEEESCC-SSSSSCCCSCCSTTCCEEEEEEC---SSCEEEE
T ss_pred CEEEEEccccCccccEEEECCCCCCCcCCEeeccccCCCCEEEeEE-ecCCCceeEEEecCCeEEEEEec---CCEEEEE
Confidence 4566666666666666554 3333 2232222 27887532 566677775 6667777
Q ss_pred eCCCCeee
Q 033076 75 VPSSHNCD 82 (128)
Q Consensus 75 ~~s~d~ve 82 (128)
++|++.-.
T Consensus 143 LPSGe~r~ 150 (239)
T 3j21_B 143 LPSGELKA 150 (239)
T ss_dssp CTTSCEEE
T ss_pred cCCCCEEE
Confidence 88887643
No 37
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=29.16 E-value=78 Score=21.68 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=34.3
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
.+.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 94 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTHV 94 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEEE
Confidence 36677777788888999999999988888777776666323356653
No 38
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=28.61 E-value=74 Score=21.86 Aligned_cols=45 Identities=4% Similarity=-0.136 Sum_probs=33.1
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~f 104 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++. +|+ .++.
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~-kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDG-ALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETT-EEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECC-EEEE
Confidence 36677777888888889999998888777777766665 444 5554
No 39
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=28.27 E-value=80 Score=22.48 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=14.0
Q ss_pred EEecccccCceEEEEC
Q 033076 21 PQQAGTIRKNGYIVIK 36 (128)
Q Consensus 21 ~i~~~~ikkG~~i~~~ 36 (128)
.+.|++||+|+.|.+-
T Consensus 105 ~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 105 EKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEGGGCCTTCEEEEC
T ss_pred EEEHHHCCCCCEEEEc
Confidence 5789999999999874
No 40
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=28.16 E-value=95 Score=21.23 Aligned_cols=47 Identities=9% Similarity=-0.136 Sum_probs=34.5
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~fM 105 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++. +|++.++..
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~~ 97 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVHE 97 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEEE
Confidence 36677777888888999999999888888777776665 441466663
No 41
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=28.02 E-value=59 Score=22.10 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=35.8
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEecC
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTE 107 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fMD~ 107 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-++|.++...+
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~g~ 95 (126)
T 2qo4_A 47 DFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCRTD 95 (126)
T ss_dssp EEEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEECS
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEEcC
Confidence 3566677778888899999999998888877777776633336766533
No 42
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=27.88 E-value=74 Score=21.87 Aligned_cols=47 Identities=4% Similarity=-0.197 Sum_probs=32.8
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
++.++...+.+..+.+|+.++.++...++-+.++-+..-.+|.++..
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 94 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQD 94 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEEE
Confidence 36667777778888889999999887777766666654333355543
No 43
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=27.86 E-value=1.3e+02 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=32.4
Q ss_pred EEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCC
Q 033076 20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 20 ~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s 77 (128)
+.++.-.+++|+.|.+. +....+++ | .+.+.|+-+|+.+.+++.+
T Consensus 50 ~~~~~~~v~~GD~i~~t--------V~~~s~~~-g----~~tleN~ttg~~~t~t~t~ 94 (173)
T 1y43_B 50 YDFSDITISEGDSIKVT--------VEATSKSS-G----SATVENLTTGQSVTHTFSG 94 (173)
T ss_dssp EEETTCCCCTTCEEEEE--------EEEEETTE-E----EEEEEETTTTEEEEEEECS
T ss_pred cccccceeCCCCEEEEE--------EEEcCCCc-E----EEEEEECCCCEEEEEEEcC
Confidence 34445668889988764 33333444 3 7899999999999999976
No 44
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=27.61 E-value=80 Score=21.73 Aligned_cols=45 Identities=9% Similarity=-0.089 Sum_probs=32.0
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEE
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~f 104 (128)
+.++...+.+..+..|+.++.++.-..+-+.++-++.-+++.++.
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 555666677778888999999888877877777766533335554
No 45
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=27.36 E-value=1.5e+02 Score=20.26 Aligned_cols=54 Identities=6% Similarity=-0.012 Sum_probs=35.8
Q ss_pred EEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEE-eeeEEEEecCC
Q 033076 43 VEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTR-TDYQLIDISED 99 (128)
Q Consensus 43 ve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~-~~~qylY~dgd 99 (128)
+++.-.++| +.-.+.+.++|.-+- .++.+|+|+.+++....+. -.--|-|.++.
T Consensus 9 ~~v~~~~~g--~~v~~~ltv~N~s~~-~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~ 63 (120)
T 3isy_A 9 LSIDAIQEP--EQIKFNMSLKNQSER-AIEFQFSTGQKFELVVYDSEHKERYRYSKEK 63 (120)
T ss_dssp EEEEEEECS--SCEEEEEEEEECSSS-CEEEEESSSCCEEEEEECTTCCEEEETTTTC
T ss_pred EEEeeccCC--CeEEEEEEEEcCCCC-cEEEEeCCCCEEEEEEECCCCCEEEEccccc
Confidence 444444555 467888999997654 4889999999999887762 23333345443
No 46
>3rby_A Uncharacterized protein YLR301W; beta-barrel, unknown function; HET: PGE; 2.30A {Saccharomyces cerevisiae}
Probab=27.35 E-value=46 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.2
Q ss_pred EEEecccccCceEEEECCeeEEEEEee
Q 033076 20 FPQQAGTIRKNGYIVIKGRPCKVVEVS 46 (128)
Q Consensus 20 ~~i~~~~ikkG~~i~~~g~p~~Vve~~ 46 (128)
++.....+++|+.|.++|..|+|+|..
T Consensus 218 fP~~~~~l~~g~~v~v~g~~W~viE~~ 244 (245)
T 3rby_A 218 IPQSYENLKKGSTVTSNGLNWEVIEYH 244 (245)
T ss_dssp SCCCCTTCCTTCEEEETTEEEEEEEEE
T ss_pred CCccccccccCCEEEECCeEEEEEEec
Confidence 556677799999999999999999863
No 47
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=27.35 E-value=71 Score=25.26 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=21.0
Q ss_pred cCCCCcc------cEEEEEEEEccCCcEEEEeeCCCCeee
Q 033076 49 KTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (128)
Q Consensus 49 kpGK~G~------A~v~~k~knl~TG~~~e~t~~s~d~ve 82 (128)
+||++|+ +.+++..++ +...-..++|++.-.
T Consensus 148 ~pG~Gg~laRsAGt~A~ii~k~---~~~~~vrLPSGe~r~ 184 (276)
T 3v2d_D 148 EPKKGAKLARAAGTSAQIQGRE---GDYVILRLPSGELRK 184 (276)
T ss_dssp STTSCEEESCSTTCCEEEEEEE---TTEEEEECTTSCEEE
T ss_pred cCCCCceEEEeCCCeEEEEEec---CCEEEEECCCCCeEE
Confidence 7888532 456677765 777777888887543
No 48
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=27.27 E-value=90 Score=19.64 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=22.7
Q ss_pred ccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEE
Q 033076 25 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVG 62 (128)
Q Consensus 25 ~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~ 62 (128)
.+|.+...|.++|+.|.+..-+...+|. .|++..
T Consensus 25 ~~i~~~G~V~i~Ge~W~A~s~~~i~~G~----~V~Vv~ 58 (80)
T 2exd_A 25 KIAEDHYLVEVEGDKWIAYSDEKLSLGD----RVMVVD 58 (80)
T ss_dssp ECCTTCEEEEETTEEEEECCSSCCCTTC----EEEEEE
T ss_pred EecCCCEEEEECCEEEEEEECCccCCCC----EEEEEE
Confidence 3566677899999999987544444454 445444
No 49
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=26.48 E-value=80 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=25.1
Q ss_pred CcceeEEEecccc--cCceEEEECCeeEEEEEeeEec
Q 033076 15 GASKTFPQQAGTI--RKNGYIVIKGRPCKVVEVSTSK 49 (128)
Q Consensus 15 ~~~~t~~i~~~~i--kkG~~i~~~g~p~~Vve~~~~k 49 (128)
|..-|.++=++.- |+|+.+.++|+-|.|..+++.-
T Consensus 50 G~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~n 86 (102)
T 2pp6_A 50 GNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFN 86 (102)
T ss_dssp --CEEEEECCSSCCCCTTCEEEETTEEEEEEEEEEET
T ss_pred CCceEEEEecCCcccCCCCEEEEcCcEEEEEEEEEEC
Confidence 3444555545554 5689999999999999998863
No 50
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=26.35 E-value=88 Score=21.73 Aligned_cols=45 Identities=7% Similarity=-0.007 Sum_probs=32.9
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeec--ceEEEeeeEEEEe-cCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLIDI-SEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~--~~ve~~~~qylY~-dgd~~~~f 104 (128)
.+.++..-+.+..+.+|+.++.++. ..++-+.++-++. +|+ .++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~-kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGD-VLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETT-EEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCC-EEEE
Confidence 3667777888888999999999998 7777666665555 444 6665
No 51
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=26.13 E-value=77 Score=22.40 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=36.9
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~fM 105 (128)
.+.++..-+.+..+.+|+.++.++...++-+.++-++. +||+.++..
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~~ 116 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 116 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEEE
Confidence 36777888888999999999999988888888877776 452466665
No 52
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=25.37 E-value=89 Score=20.19 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.2
Q ss_pred cccccCceEEEEC---CeeEEE
Q 033076 24 AGTIRKNGYIVIK---GRPCKV 42 (128)
Q Consensus 24 ~~~ikkG~~i~~~---g~p~~V 42 (128)
.-+|++|++|.++ ++|..|
T Consensus 37 ll~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 37 VLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHCCTTCEEEEEEETTCCEEE
T ss_pred HhCCCCCCEEEeCCCCCCcEEE
Confidence 5578999999998 567666
No 53
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=25.25 E-value=84 Score=22.37 Aligned_cols=46 Identities=7% Similarity=-0.118 Sum_probs=34.1
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++...+.+..+.+|+.++.++....+-+.++-++.-++|.++..
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~~ 117 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHV 117 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEEE
Confidence 6677777888889999999999988777777776665433466553
No 54
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=24.85 E-value=64 Score=22.03 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=33.2
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~fM 105 (128)
++.++..-+.+..+.+|+.++.++...++-+.++-++. +|+ .++..
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~-kLv~~ 94 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHI 94 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETT-EEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECC-EEEEE
Confidence 35666777777888889999998888777777776665 444 56653
No 55
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=24.73 E-value=90 Score=21.40 Aligned_cols=44 Identities=11% Similarity=-0.035 Sum_probs=32.1
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe--cCCceEEE
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI--SEDGFVSL 104 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~--dgd~~~~f 104 (128)
+.++..-+.+..+.+|+.++.++...++-+.++-++. +|+ .++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~-kLv~ 96 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSES-KLTQ 96 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETT-EEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCC-EEEE
Confidence 5666777777888889999998888777776666655 554 5555
No 56
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=24.06 E-value=75 Score=21.57 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=29.9
Q ss_pred EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEE
Q 033076 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKL 71 (128)
Q Consensus 22 i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~ 71 (128)
+-..+|++|..|.++|+...+ .+-. |-.| ++-+++|..|..+
T Consensus 35 VAl~~L~aG~~v~~~g~~v~l--~~dI-P~GH-----KiAl~dI~~Ge~V 76 (105)
T 3k3s_A 35 VALADLAEGTEVSVDNQTVTL--RQDV-ARGH-----KFALTDIAKGANV 76 (105)
T ss_dssp EESSCBCTTCEEEETTEEEEC--SSCB-CTTC-----EEESSCBCTTCEE
T ss_pred EecCccCCCCEEeeCCcEEEE--CccC-CCCC-----EEEEcccCCCCeE
Confidence 556789999999998874322 2333 4335 7889999998865
No 57
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=23.92 E-value=90 Score=21.30 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=34.7
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe-cCCceEEEe
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~-dgd~~~~fM 105 (128)
+.++..-+.+..+.+|+.++.++...++-+.++-++. +||+.++..
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~~ 95 (131)
T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQT 95 (131)
T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEEE
Confidence 6677778888899999999999988888777776665 452466664
No 58
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=23.85 E-value=88 Score=21.43 Aligned_cols=45 Identities=4% Similarity=-0.077 Sum_probs=33.3
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeec--ceEEEeeeEEEEe-cCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLIDI-SEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~--~~ve~~~~qylY~-dgd~~~~f 104 (128)
.+.++..-+.+..+.+|+.++.++. ..++-+.++-++. +|+ .++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~-kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGD-KLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETT-EEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECC-EEEE
Confidence 3667777788888899999999998 7777776666655 344 5665
No 59
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=23.54 E-value=90 Score=22.12 Aligned_cols=46 Identities=9% Similarity=-0.108 Sum_probs=33.7
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++...+.+..+.+|+.++.++....+-+.++-++.-++|.++..
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~~ 115 (152)
T 3q6l_A 70 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHV 115 (152)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEEE
Confidence 6667777778888999999999987777777776665433466554
No 60
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex, hydrolase-hydrolase complex; HET: TA2; 1.95A {Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A* 1s2k_A* 2ifw_A*
Probab=23.33 E-value=2.1e+02 Score=21.42 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=31.2
Q ss_pred EEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCC
Q 033076 20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (128)
Q Consensus 20 ~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s 77 (128)
+.+..-.+++|+.|.+. +....+.+ | .+.+.|+-+|+.+.+++.+
T Consensus 76 ~~~s~~~vs~GD~i~~t--------V~~~s~t~-g----~~tleN~ttg~~~t~t~s~ 120 (206)
T 2ifr_A 76 DDFSGITISEGDSIQMS--------VTATSDTS-G----SATLENLTTGQKVSKSFSN 120 (206)
T ss_dssp EEC--CCCCTTCEEEEE--------EEEEETTE-E----EEEEEETTTTEEEEEEECC
T ss_pred cccccceeCCCCEEEEE--------EEEcCCCc-E----EEEEEECCCCEEEEEEEcc
Confidence 34445668889988763 33333344 3 7899999999999999976
No 61
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=22.91 E-value=92 Score=22.29 Aligned_cols=46 Identities=13% Similarity=-0.064 Sum_probs=34.5
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++...+.+..+.+|+.++.++....+-+.++-++.-++|.++..
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~~ 120 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHL 120 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEEE
Confidence 5567777888889999999999988888777777765444466544
No 62
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=22.81 E-value=98 Score=21.36 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=33.6
Q ss_pred EEEEEc-cCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl-~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++.. -+.+..+.+|+.++.++...++-+.++-++.-++|.++..
T Consensus 52 ~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 98 (136)
T 2lba_A 52 FTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVAD 98 (136)
T ss_dssp EEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEEE
T ss_pred EEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEEE
Confidence 556677 6677888889999999888888777777766333366665
No 63
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=22.73 E-value=90 Score=26.08 Aligned_cols=51 Identities=8% Similarity=-0.071 Sum_probs=35.4
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceE
Q 033076 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHV 86 (128)
Q Consensus 28 kkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~v 86 (128)
..|+.+.+||.++-.+. .||+ .+|+++.|.-.-..+...+..+.++.++-.
T Consensus 181 ~~gd~~lvNG~~~p~~~----v~g~----~~RlRliNas~~~~~~l~i~dg~~~~vIa~ 231 (488)
T 3od3_A 181 WFGDTLLTNGAIYPQHA----APRG----WLRLRLLNGCNARSLNFATSDNRPLYVIAS 231 (488)
T ss_dssp CCCSEEEETTBSSCEEE----EEEE----EEEEEEEECCSSCCEEEEETTCCCEEEEEE
T ss_pred CCCCEEEEcCCcCccEe----cCCC----EEEEEEEccCCCceeeeeecCCCeEEEEEe
Confidence 35899999998654433 2443 789999998888777777765566554443
No 64
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=22.73 E-value=98 Score=21.47 Aligned_cols=46 Identities=9% Similarity=-0.108 Sum_probs=32.7
Q ss_pred EEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++...+.+..+.+|..++.++....+-+.++-++.-.+|.++..
T Consensus 57 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 102 (139)
T 3p6d_A 57 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHV 102 (139)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEEE
Confidence 5666777777888899999999987777777766665433456543
No 65
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=22.67 E-value=73 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=23.4
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVT 87 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve 87 (128)
.++.||+.+|+++.-+..+...|.++.+.
T Consensus 242 ~IRVrNl~SgkiV~G~V~~~G~Vrv~~~~ 270 (278)
T 3frn_A 242 TVRAMNVESRKYVFGRVERGPVLRILEVV 270 (278)
T ss_dssp EEEEEC--CCCEEEEEEETTTEEEECC--
T ss_pred EEEEEECCCCCEEEEEEecCCeEEEEEEE
Confidence 68899999999999999999999998865
No 66
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=22.66 E-value=1.8e+02 Score=19.57 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.3
Q ss_pred EEEEEc-cCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceEEEe
Q 033076 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (128)
Q Consensus 60 ~k~knl-~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~~fM 105 (128)
+.++.. -+.+..+.+|+.++.++...++-+.++-++.-++|.++..
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 93 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVVN 93 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEEC
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEEE
Confidence 556666 6677888899999999988888887777776433466665
No 67
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=21.74 E-value=81 Score=21.32 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=19.7
Q ss_pred cceeEEEecc-----cccCceEEEECCe--eEEEEEe
Q 033076 16 ASKTFPQQAG-----TIRKNGYIVIKGR--PCKVVEV 45 (128)
Q Consensus 16 ~~~t~~i~~~-----~ikkG~~i~~~g~--p~~Vve~ 45 (128)
+.+|+-+-.+ .|++|+.|.++|+ .+.|+++
T Consensus 18 G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v 54 (109)
T 2z0t_A 18 GKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGI 54 (109)
T ss_dssp TSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEE
T ss_pred CCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEE
Confidence 4567766554 4689999999764 3444444
No 68
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=21.40 E-value=1.1e+02 Score=21.06 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEec-CCceEEEe
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS-EDGFVSLL 105 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~d-gd~~~~fM 105 (128)
++.++..-+.+..+..|+.++.++...++-+.++-+..- |||.++.-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~~ 97 (132)
T 3vg7_A 50 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 97 (132)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEEE
T ss_pred EEEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEEE
Confidence 355666677777888999999999888887777777654 42466653
No 69
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=21.28 E-value=1.1e+02 Score=20.88 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=30.9
Q ss_pred EEEEEEccCCcEEEEeeCCCCeeecce--EEEeeeEEEEe-cCCceEEE
Q 033076 59 HFVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLIDI-SEDGFVSL 104 (128)
Q Consensus 59 ~~k~knl~TG~~~e~t~~s~d~ve~~~--ve~~~~qylY~-dgd~~~~f 104 (128)
++.++..-+.+..+.+|+.++.++... ++-+.++-++. +|+ .++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~-kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDND-RLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETT-EEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECC-EEEE
Confidence 356667777778888888888888766 66666555554 444 5665
No 70
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=21.23 E-value=82 Score=24.41 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=33.3
Q ss_pred eeEEEecccccCceEEEE--------------CCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEee
Q 033076 18 KTFPQQAGTIRKNGYIVI--------------KGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (128)
Q Consensus 18 ~t~~i~~~~ikkG~~i~~--------------~g~p--~~Vve~~~~kpGK~G~------A~v~~k~knl~TG~~~e~t~ 75 (128)
..|.+.+..|+.|++|.. ..-| ..|-.++. +||++|+ +.+++..+ .++..-..+
T Consensus 66 k~yIlAp~gl~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~-~pG~Gg~laRsAGt~A~ii~k---e~~~~~vrL 141 (240)
T 1vq8_A 66 RRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVES-SPGDGGKFARASGVNAQLLTH---DRNVAVVKL 141 (240)
T ss_dssp EEEECCBTTCBTTCEEEBSTTCCSCTTCEEEGGGSCTTCEEESBCS-STTSCCCBSCSTTCCEEEEEC---CSSCEEEEC
T ss_pred EEEEEecCCCccCeEEEECCCccccccccccccCCCCCCEEEeEec-cCCCCceEEEeCCCeEEEEEe---cCCEEEEEC
Confidence 456666666666666553 3333 22322222 7777432 55566666 466666777
Q ss_pred CCCCeee
Q 033076 76 PSSHNCD 82 (128)
Q Consensus 76 ~s~d~ve 82 (128)
+|++.-.
T Consensus 142 PSGe~r~ 148 (240)
T 1vq8_A 142 PSGEMKR 148 (240)
T ss_dssp TTSCEEE
T ss_pred CCCCEEE
Confidence 7776544
No 71
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.94 E-value=71 Score=20.18 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=15.0
Q ss_pred cccccCceEEEEC---CeeEEE
Q 033076 24 AGTIRKNGYIVIK---GRPCKV 42 (128)
Q Consensus 24 ~~~ikkG~~i~~~---g~p~~V 42 (128)
.-+|++|++|.++ ++|..|
T Consensus 33 ll~L~~GdVi~Ld~~~~e~v~i 54 (84)
T 1o9y_A 33 LRRLDAGTILEVTGISPGHATL 54 (84)
T ss_dssp HHTCCTTCEEEECSSCTTEEEE
T ss_pred HhcCCCCCEEEeCCCCCCCEEE
Confidence 4578999999999 567655
No 72
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=20.71 E-value=69 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.4
Q ss_pred cccCceEEEECCeeEEEEEe
Q 033076 26 TIRKNGYIVIKGRPCKVVEV 45 (128)
Q Consensus 26 ~ikkG~~i~~~g~p~~Vve~ 45 (128)
.+++|+.+.+.+.|++|+++
T Consensus 103 ~~~~G~~~~~~~~~~~V~~v 122 (151)
T 1ix5_A 103 EPEEGMVILAEGIPATITEV 122 (151)
T ss_dssp CCCTTEEEESSSCEEEEEEE
T ss_pred cccccCEEEECCeEEEEEEE
Confidence 57889999999999998875
Done!