BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033077
(128 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459779|ref|XP_002285907.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Vitis vinifera]
gi|302141700|emb|CBI18903.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/111 (81%), Positives = 103/111 (92%)
Query: 5 SSCGAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGS 64
SS G K EE +VG YNS+ +KKARLHSTLTALLDDPILADVPK+PTLSDVDTLI+LE+GS
Sbjct: 3 SSGGGKREEEDVGSYNSNNVKKARLHSTLTALLDDPILADVPKEPTLSDVDTLINLELGS 62
Query: 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
AMRIS++KLD TSFDVAV+NSATVKDLKLAIKKK+NDMEQS +GHRHISW+
Sbjct: 63 AMRISVIKLDSTSFDVAVLNSATVKDLKLAIKKKINDMEQSKMGHRHISWK 113
>gi|224065725|ref|XP_002301940.1| predicted protein [Populus trichocarpa]
gi|222843666|gb|EEE81213.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/115 (78%), Positives = 100/115 (86%), Gaps = 5/115 (4%)
Query: 1 MESSSSCGAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISL 60
MESSS E EVG YNSS +KKA+L STL ALLDDPIL+DVPKKPTLSDVDTLISL
Sbjct: 1 MESSSKG-----EDEVGGYNSSNVKKAKLQSTLAALLDDPILSDVPKKPTLSDVDTLISL 55
Query: 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
EMGSAMRIS+ KLDGTSFDVA+MNSATVKDLKLAIK+K+ +MEQS +GHRHISW+
Sbjct: 56 EMGSAMRISVQKLDGTSFDVALMNSATVKDLKLAIKRKLIEMEQSKMGHRHISWK 110
>gi|356538591|ref|XP_003537786.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 2 [Glycine max]
Length = 190
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 7 CGAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAM 66
C K + + +YN S++KKARL+S LT LLDDPIL+DVPK PT +DVDTLI+LE+GSAM
Sbjct: 19 CFGKLGSINMEEYNKSSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGSAM 78
Query: 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
RIS+LKLDGT+ DV VMNSATVKDLKLAIKKKVNDMEQS++GHRHISW+ A SC
Sbjct: 79 RISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSC 137
>gi|356541000|ref|XP_003538972.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Glycine max]
Length = 187
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/122 (68%), Positives = 99/122 (81%)
Query: 6 SCGAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSA 65
C K + + +YN S++KKARL+S LT LLDDPIL+DVPK PT +DVDTLI+LE+GSA
Sbjct: 15 GCFGKLGSINMEEYNKSSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGSA 74
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
MRIS+LKLDGT+ DV VMNSATVKDLKLAIKKKVNDMEQS++GHRHISW+ A SC
Sbjct: 75 MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSC 134
Query: 126 SS 127
+
Sbjct: 135 HN 136
>gi|255638264|gb|ACU19445.1| unknown [Glycine max]
Length = 190
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 97/122 (79%)
Query: 6 SCGAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSA 65
C K + + +YN S++KKARL+S LT LLDDPIL DVPK PT +DVDT I+LE+GSA
Sbjct: 18 GCFGKLGSINMEEYNKSSVKKARLNSLLTTLLDDPILFDVPKNPTFADVDTFINLELGSA 77
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
MRIS+LKLDGT+ DV VMNSATVKDLKLAIKKKVNDMEQS++GHRHISW+ A SC
Sbjct: 78 MRISVLKLDGTTLDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSC 137
Query: 126 SS 127
+
Sbjct: 138 HN 139
>gi|356538589|ref|XP_003537785.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 1 [Glycine max]
Length = 163
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 18 DYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS 77
+YN S++KKARL+S LT LLDDPIL+DVPK PT +DVDTLI+LE+GSAMRIS+LKLDGT+
Sbjct: 3 EYNKSSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGSAMRISVLKLDGTT 62
Query: 78 FDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSCSS 127
DV VMNSATVKDLKLAIKKKVNDMEQS++GHRHISW+ A SC +
Sbjct: 63 LDVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISWKHVWANYCLSCHN 112
>gi|449455569|ref|XP_004145525.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cucumis sativus]
Length = 181
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/106 (77%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Query: 10 KEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRIS 69
K+EE VG Y+S+ +KK RL+STL ALLDDPILADVPK PTLS VDTLISLE+GSAMRIS
Sbjct: 14 KDEENAVG-YHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRIS 72
Query: 70 ILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
+LKLDGT+ DV +MNSAT+KDLKLAIKKKVN+MEQS +GHRHISW+
Sbjct: 73 VLKLDGTAIDVVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWK 118
>gi|307136304|gb|ADN34128.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 181
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
Query: 9 AKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRI 68
+K+EE VG Y+S+ +KK RL+STL ALLDDPILADVPK PTLS VDTLISLE+GSAMRI
Sbjct: 13 SKDEENVVG-YHSNNVKKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRI 71
Query: 69 SILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
S+LKLDGT+ DV +MNSAT+KDLKLAIK+KVN+ EQS +GHRHISW+
Sbjct: 72 SVLKLDGTAIDVLIMNSATLKDLKLAIKQKVNETEQSKMGHRHISWK 118
>gi|388501190|gb|AFK38661.1| unknown [Lotus japonicus]
Length = 163
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 86/100 (86%)
Query: 16 VGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG 75
+G+Y KKAR+ S L ALLDDPIL+DVPK PTL DVDTLI LE+GSAMRISI+KLD
Sbjct: 1 MGEYEERRDKKARVQSMLKALLDDPILSDVPKNPTLYDVDTLIGLELGSAMRISIIKLDA 60
Query: 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDV VMNSATVKDLKLAIKKKVNDMEQSN+GHR ISW+
Sbjct: 61 TSFDVTVMNSATVKDLKLAIKKKVNDMEQSNMGHRQISWR 100
>gi|449519748|ref|XP_004166896.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cucumis sativus]
Length = 209
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 84/91 (92%)
Query: 25 KKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84
KK RL+STL ALLDDPILADVPK PTLS VDTLISLE+GSAMRIS+LKLDGT+ DV +MN
Sbjct: 56 KKVRLNSTLAALLDDPILADVPKNPTLSHVDTLISLELGSAMRISVLKLDGTAIDVVIMN 115
Query: 85 SATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
SAT+KDLKLAIKKKVN+MEQS +GHRHISW+
Sbjct: 116 SATLKDLKLAIKKKVNEMEQSKMGHRHISWK 146
>gi|242074686|ref|XP_002447279.1| hypothetical protein SORBIDRAFT_06g031870 [Sorghum bicolor]
gi|241938462|gb|EES11607.1| hypothetical protein SORBIDRAFT_06g031870 [Sorghum bicolor]
Length = 183
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 93/108 (86%), Gaps = 1/108 (0%)
Query: 8 GAKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMR 67
G+ + EV V Y S K+ARL S L ALLDDPILADVP+KP+L+DVDTLI+LE+GSAMR
Sbjct: 14 GSGKPEV-VAAYQSKEAKQARLQSMLAALLDDPILADVPRKPSLADVDTLINLELGSAMR 72
Query: 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
+S++KLD TSF+VAV+NSATVKDLKLAI+KK+N++EQ +GHRHISW+
Sbjct: 73 LSVVKLDNTSFEVAVLNSATVKDLKLAIRKKINEIEQEQMGHRHISWK 120
>gi|116309855|emb|CAH66890.1| OSIGBa0099L20.5 [Oryza sativa Indica Group]
gi|218195764|gb|EEC78191.1| hypothetical protein OsI_17798 [Oryza sativa Indica Group]
Length = 187
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 97/124 (78%), Gaps = 9/124 (7%)
Query: 1 MESSSSCGAKEEEV---------EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTL 51
M+ S A EEE EV Y SS K+A+L S L ALLDDPILADVP+KP+L
Sbjct: 1 MDPGKSFSAAEEEATDSVSTKPEEVAAYQSSEAKQAKLQSMLAALLDDPILADVPRKPSL 60
Query: 52 SDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRH 111
+DVDTLI+LE+GSAMR++++KLDGTSFDVA++N+ATVKDLK+AI+KK +++EQ +GHRH
Sbjct: 61 ADVDTLINLELGSAMRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRH 120
Query: 112 ISWQ 115
ISW+
Sbjct: 121 ISWK 124
>gi|38346077|emb|CAE04845.2| OSJNBa0084K01.17 [Oryza sativa Japonica Group]
gi|222629718|gb|EEE61850.1| hypothetical protein OsJ_16518 [Oryza sativa Japonica Group]
Length = 187
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 97/124 (78%), Gaps = 9/124 (7%)
Query: 1 MESSSSCGAKEEEV---------EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTL 51
M+ S A EEE EV Y SS K+A+L S L ALLDDPILADVP+KP+L
Sbjct: 1 MDPGKSFSAAEEEATDSVSTKPEEVAAYQSSEAKQAKLQSMLAALLDDPILADVPRKPSL 60
Query: 52 SDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRH 111
+DVDTLI+LE+GSAMR++++KLDGTSFDVA++N+ATVKDLK+AI+KK +++EQ +GHRH
Sbjct: 61 ADVDTLINLELGSAMRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRH 120
Query: 112 ISWQ 115
ISW+
Sbjct: 121 ISWK 124
>gi|388495574|gb|AFK35853.1| unknown [Lotus japonicus]
Length = 162
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 84/100 (84%)
Query: 16 VGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG 75
+G+Y KKA + S L ALLDDPIL+DVPK PTL DVD LI LE+GSAMRISI+KLD
Sbjct: 1 MGEYEERRDKKAGVQSMLKALLDDPILSDVPKNPTLYDVDILIGLELGSAMRISIIKLDA 60
Query: 76 TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDV VMNSATVKDLKLAIKKKVNDMEQSN+GHR ISW+
Sbjct: 61 TSFDVTVMNSATVKDLKLAIKKKVNDMEQSNMGHRQISWR 100
>gi|414584945|tpg|DAA35516.1| TPA: hypothetical protein ZEAMMB73_975050 [Zea mays]
Length = 177
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 88/101 (87%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
EV Y S K+ARL S L ALLDDPILADV +KP+L+DVDTLI+LE+GSAMR++++KLD
Sbjct: 10 EVAAYQSKEAKQARLQSMLAALLDDPILADVTRKPSLADVDTLINLELGSAMRLTVVKLD 69
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDVAV+NSATVKDLKLAI+KK+N++EQ +GHRHISW+
Sbjct: 70 NTSFDVAVLNSATVKDLKLAIRKKINEIEQEKMGHRHISWK 110
>gi|297603512|ref|NP_001054165.2| Os04g0663500 [Oryza sativa Japonica Group]
gi|255675856|dbj|BAF16079.2| Os04g0663500 [Oryza sativa Japonica Group]
Length = 155
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 96/125 (76%), Gaps = 11/125 (8%)
Query: 1 MESSSSCGAKEEEV---------EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTL 51
M+ S A EEE EV Y SS K+A+L S L ALLDDPILADVP+KP+L
Sbjct: 1 MDPGKSFSAAEEEATDSVSTKPEEVAAYQSSEAKQAKLQSMLAALLDDPILADVPRKPSL 60
Query: 52 SDVDTLISLEMGSAMRISILKLDGTSF--DVAVMNSATVKDLKLAIKKKVNDMEQSNLGH 109
+DVDTLI+LE+GSAMR++++KLDGTSF DVA++N+ATVKDLK+AI+KK +++EQ +GH
Sbjct: 61 ADVDTLINLELGSAMRLTVVKLDGTSFGTDVAMLNTATVKDLKMAIRKKTDEIEQEKMGH 120
Query: 110 RHISW 114
RHISW
Sbjct: 121 RHISW 125
>gi|357117689|ref|XP_003560596.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Brachypodium distachyon]
Length = 150
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
EV Y SS K+A+L S L ALLDDPILADVP+KP+L DVDTLI+LE+GSAMR+ ++KLD
Sbjct: 11 EVAAYQSSEAKQAKLQSMLAALLDDPILADVPRKPSLGDVDTLINLELGSAMRVIVVKLD 70
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVF 117
TSFDV V+N+ATVKDLKLAIKKK++++EQ +G+RHISW+
Sbjct: 71 DTSFDVPVLNTATVKDLKLAIKKKISEIEQGQMGYRHISWKYI 113
>gi|357477471|ref|XP_003609021.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355510076|gb|AES91218.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 441
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 86/101 (85%), Gaps = 4/101 (3%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
E +Y S +KKA++ L ALL+DPILADVPK PTL DV+TLI LE+GSAMRI++LKLD
Sbjct: 272 EGAEYKSG-LKKAKV---LKALLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLD 327
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDV +MN+AT+KDLKLAIKKKVN MEQS++GHRHISW+
Sbjct: 328 TTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWR 368
>gi|357473837|ref|XP_003607203.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355508258|gb|AES89400.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 104
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 4/100 (4%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
E +Y S +KKA++ L ALL+DPILADVPK PTL DV+TLI LE+GSAMRI++LKLD
Sbjct: 3 EGAEYKSG-LKKAKV---LKALLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLD 58
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
TSFDV +MN+AT+KDLKLAIKKKVN MEQS++GHRHISW
Sbjct: 59 TTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISW 98
>gi|357473839|ref|XP_003607204.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355508259|gb|AES89401.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 162
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 86/101 (85%), Gaps = 4/101 (3%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
E +Y S +KKA++ L ALL+DPILADVPK PTL DV+TLI LE+GSAMRI++LKLD
Sbjct: 3 EGAEYKSG-LKKAKV---LKALLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLD 58
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDV +MN+AT+KDLKLAIKKKVN MEQS++GHRHISW+
Sbjct: 59 TTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWR 99
>gi|357473841|ref|XP_003607205.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355508260|gb|AES89402.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 146
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 86/101 (85%), Gaps = 4/101 (3%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
E +Y S +KKA++ L ALL+DPILADVPK PTL DV+TLI LE+GSAMRI++LKLD
Sbjct: 3 EGAEYKSG-LKKAKV---LKALLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLD 58
Query: 75 GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
TSFDV +MN+AT+KDLKLAIKKKVN MEQS++GHRHISW+
Sbjct: 59 TTSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWR 99
>gi|284444059|gb|ADB85768.1| hypothetical protein [Wolffia arrhiza]
Length = 164
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 76/91 (83%)
Query: 25 KKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84
K+A L S + ALL DP+L+DVP +PTLSDVDTL+ E+G AM+IS+LKLDG+SFDV V N
Sbjct: 7 KRAGLESMVKALLSDPLLSDVPARPTLSDVDTLLRFELGGAMKISVLKLDGSSFDVVVSN 66
Query: 85 SATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
SA+VKDLKLAI+KK+ M++ +GHRHISW+
Sbjct: 67 SASVKDLKLAIRKKIEAMQEGQMGHRHISWR 97
>gi|30680468|ref|NP_187443.2| U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|27754393|gb|AAO22645.1| unknown protein [Arabidopsis thaliana]
gi|48310596|gb|AAT41846.1| At3g07860 [Arabidopsis thaliana]
gi|332641091|gb|AEE74612.1| U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 165
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 14 VEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL 73
+E GDY+ T K+ +L S L+ LL DPILADVP+ PTLSDV TL+SLE GSAMR+S++KL
Sbjct: 1 MESGDYDVET-KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKL 59
Query: 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSCSS 127
DG+S DVAVMNSAT+KDLKL IKKKVN+MEQ+N+GHRHISW+ + SC++
Sbjct: 60 DGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113
>gi|6648198|gb|AAF21196.1|AC013483_20 unknown protein [Arabidopsis thaliana]
Length = 232
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 14 VEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL 73
+E GDY+ T K+ +L S L+ LL DPILADVP+ PTLSDV TL+SLE GSAMR+S++KL
Sbjct: 1 MESGDYDVET-KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKL 59
Query: 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSCSS 127
DG+S DVAVMNSAT+KDLKL IKKKVN+MEQ+N+GHRHISW+ + SC++
Sbjct: 60 DGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113
>gi|297829342|ref|XP_002882553.1| hypothetical protein ARALYDRAFT_478124 [Arabidopsis lyrata subsp.
lyrata]
gi|297328393|gb|EFH58812.1| hypothetical protein ARALYDRAFT_478124 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 14 VEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL 73
+E GDY+ T K+ +L S L+ LL DPILADVP+ PTLSDV TL+SLE GSAMR+S++KL
Sbjct: 1 MESGDYDVET-KREKLKSVLSHLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKL 59
Query: 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSCSS 127
DG+S DVAVMNSAT+KDLKL IKKKVN+ EQ+N+GHRHISW+ + SC++
Sbjct: 60 DGSSLDVAVMNSATLKDLKLLIKKKVNETEQANMGHRHISWKHVWSNFCLSCNN 113
>gi|167999003|ref|XP_001752207.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696602|gb|EDQ82940.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 74/94 (78%)
Query: 21 SSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDV 80
+ ++++ ++ LLDDPILADVPK T++D+DTLI +E+GSAM++SILKLDG+ +V
Sbjct: 6 GTYFRRSQFEPLVSTLLDDPILADVPKNATVADIDTLIGVELGSAMKLSILKLDGSHLEV 65
Query: 81 AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
AV+N+A V+DLK A+ K V+ EQS+LG RHISW
Sbjct: 66 AVLNNAKVRDLKQAVMKYVDFQEQSHLGQRHISW 99
>gi|293331043|ref|NP_001167854.1| uncharacterized protein LOC100381558 [Zea mays]
gi|223944451|gb|ACN26309.1| unknown [Zea mays]
Length = 108
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 15 EVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD 74
EV Y S K+ARL S L ALLDDPILADV +KP+L+DVDTLI+LE+GSAMR++++KLD
Sbjct: 10 EVAAYQSKEAKQARLQSMLAALLDDPILADVTRKPSLADVDTLINLELGSAMRLTVVKLD 69
Query: 75 GTSF 78
TSF
Sbjct: 70 NTSF 73
>gi|168033033|ref|XP_001769021.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679655|gb|EDQ66099.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 175
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 14 VEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL 73
V GD + K+++ +++ +DP V T++ VD+LI +E+G++M++SILKL
Sbjct: 5 VRRGDMGT-YFKRSQFKPLVSSFREDP----VGTAGTVAKVDSLIGVELGTSMKLSILKL 59
Query: 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DG+ FDV V+ ++ V+DLK A+ K V+ +EQS LGH+ ISWQ
Sbjct: 60 DGSHFDVVVLTNSRVRDLKQAVVKYVDHLEQSELGHKRISWQ 101
>gi|168056786|ref|XP_001780399.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668159|gb|EDQ54772.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 14 VEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL 73
V GD + ++++ ++ L + L VPK T+ DTLI +++GSA+R+SILKL
Sbjct: 4 VRRGDL-GTYFRRSQFEPLVSTLPYEHSLDHVPKNETVVGTDTLIGVKLGSAIRLSILKL 62
Query: 74 DGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DG F+V V N+ V+DLK +I V+ EQS LGHRHISW+
Sbjct: 63 DGIHFEVTVPNNGKVRDLKQSIMMYVDSDEQSQLGHRHISWK 104
>gi|149392044|gb|ABR25901.1| conserved hypothetical protein [Oryza sativa Indica Group]
Length = 95
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 47/51 (92%)
Query: 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
AMR++++KLDGTSFDVA++N+ATVKDLK+AI+KK +++E +GHRHISW+
Sbjct: 1 AMRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEPEKMGHRHISWK 51
>gi|355756392|gb|EHH60000.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
fascicularis]
Length = 132
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 4 FQEGLAMVVQDPLLGDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 64 LDLKKAIQRYVQLKQEREGGIQHISW 89
>gi|441659753|ref|XP_003269146.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein,
partial [Nomascus leucogenys]
Length = 157
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 72 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 131
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 132 LDLKKAIQRYVQLKQEREGGIQHISW 157
>gi|390471020|ref|XP_003734415.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Callithrix jacchus]
Length = 182
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 54 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 113
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 114 LDLKKAIQRYVQLKQEREGGIQHISW 139
>gi|10439480|dbj|BAB15505.1| unnamed protein product [Homo sapiens]
Length = 132
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 4 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 64 LDLKKAIQRYVQLKQEREGGIQHISW 89
>gi|13443018|ref|NP_078847.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Homo
sapiens]
gi|114660086|ref|XP_523242.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 3 [Pan troglodytes]
gi|395747207|ref|XP_003778569.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 1 [Pongo abelii]
gi|395747209|ref|XP_003778570.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
isoform 2 [Pongo abelii]
gi|397476070|ref|XP_003809434.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Pan paniscus]
gi|426380497|ref|XP_004056899.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Gorilla gorilla gorilla]
gi|426380503|ref|XP_004056902.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 1 [Gorilla gorilla gorilla]
gi|426380505|ref|XP_004056903.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like isoform 2 [Gorilla gorilla gorilla]
gi|68052377|sp|Q9BV90.1|CP033_HUMAN RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein;
Short=U11/U12-25K; AltName: Full=Minus-99 protein
gi|14336677|gb|AAK61211.1|AE006462_3 Minus -99 protein [Homo sapiens]
gi|12655063|gb|AAH01381.1| Small nuclear ribonucleoprotein 25kDa (U11/U12) [Homo sapiens]
gi|14327922|gb|AAH09179.1| Small nuclear ribonucleoprotein 25kDa (U11/U12) [Homo sapiens]
gi|90653003|gb|ABD95904.1| U11/U12 snRNP 25 kDa protein [Homo sapiens]
gi|123982628|gb|ABM83055.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|123983044|gb|ABM83263.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|123997293|gb|ABM86248.1| chromosome 16 open reading frame 33 [synthetic construct]
gi|410222032|gb|JAA08235.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
gi|410248962|gb|JAA12448.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
gi|410304654|gb|JAA30927.1| small nuclear ribonucleoprotein 25kDa (U11/U12) [Pan troglodytes]
Length = 132
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 4 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 64 LDLKKAIQRYVQLKQEREGGIQHISW 89
>gi|281183133|ref|NP_001162284.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Papio
anubis]
gi|160904111|gb|ABX52098.1| chromosome 16 open reading frame 33 (predicted) [Papio anubis]
gi|355709782|gb|EHH31246.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|380787573|gb|AFE65662.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|383421593|gb|AFH34010.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
gi|384949440|gb|AFI38325.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Macaca
mulatta]
Length = 132
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 4 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 64 LDLKKAIQRYVQLKQEREGGIQHISW 89
>gi|440913470|gb|ELR62920.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial
[Bos grunniens mutus]
Length = 199
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 71 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 130
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 131 LDLKKAIQRYVQLRQEREGGIQHISW 156
>gi|344292082|ref|XP_003417757.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Loxodonta africana]
Length = 171
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 43 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVCVCKMDGEVMPVVVVQNATV 102
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 103 LDLKKAIQRYVQLRQEREGGIQHISW 128
>gi|351711231|gb|EHB14150.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Heterocephalus glaber]
Length = 169
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 41 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 100
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 101 LDLKKAIQRYVQLKQEREGGIQHISW 126
>gi|410985647|ref|XP_003999130.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Felis catus]
Length = 180
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 52 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEIMPVVVVQNATV 111
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 112 LDLKKAIQRYVQLRQEREGGIQHISW 137
>gi|417408430|gb|JAA50766.1| Hypothetical protein, partial [Desmodus rotundus]
Length = 183
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 55 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 114
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 115 LDLKKAIQRYVQLRQEREGGIQHISW 140
>gi|395853139|ref|XP_003799074.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Otolemur garnettii]
Length = 194
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 66 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 125
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 126 LDLKKAIQRYVQLKQEREGGVQHISW 151
>gi|119606283|gb|EAW85877.1| chromosome 16 open reading frame 33, isoform CRA_a [Homo sapiens]
Length = 267
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 139 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 198
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 199 LDLKKAIQRYVQLKQEREGGIQHISW 224
>gi|73586763|gb|AAI03172.1| SNRNP25 protein [Bos taurus]
Length = 166
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 38 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 97
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 98 LDLKKAIQRYVQLRQEREGGIQHISW 123
>gi|392332036|ref|XP_001062061.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Rattus norvegicus]
Length = 237
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 109 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 168
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 169 LDLKKAIQRYVQLKQEREGGVQHISW 194
>gi|392351107|ref|XP_213260.4| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Rattus norvegicus]
Length = 182
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 54 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 113
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 114 LDLKKAIQRYVQLKQEREGGVQHISW 139
>gi|73959877|ref|XP_854401.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Canis lupus familiaris]
Length = 213
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 85 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEIMPVVVVQNATV 144
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 145 LDLKKAIQRYVQLRQEREGGIQHISW 170
>gi|355721010|gb|AES07123.1| small nuclear ribonucleoprotein 25kDa [Mustela putorius furo]
Length = 157
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 30 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEIMPVVVVQNATV 89
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 90 LDLKKAIQRYVQLRQEREGGIQHISW 115
>gi|301769555|ref|XP_002920234.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Ailuropoda melanoleuca]
Length = 204
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 76 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEIMPVVVVQNATV 135
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 136 LDLKKAIQRYVQLRQEREGGIQHISW 161
>gi|48427640|tpg|DAA05499.1| TPA_exp: U11/U12 snRNP 25K [Homo sapiens]
gi|123237049|emb|CAI95606.2| chromosome 16 open reading frame 33 [Homo sapiens]
gi|167427356|gb|ABZ80331.1| U11/U12 snRNP 25K protein (predicted) [Callithrix jacchus]
gi|169246091|gb|ACA51067.1| U11/U12 snRNP protein (predicted) [Callicebus moloch]
Length = 123
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLKQEREGGIQHISW 80
>gi|403273560|ref|XP_003928576.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein,
partial [Saimiri boliviensis boliviensis]
Length = 200
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV
Sbjct: 72 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 131
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ + ++ G +HISW
Sbjct: 132 LDLKKAIQRYMQLKQEREGGIQHISW 157
>gi|338713072|ref|XP_001496673.3| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Equus caballus]
Length = 208
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 80 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 139
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 140 LDLKKAIQRYVQLRQEREGGIQHISW 165
>gi|348584706|ref|XP_003478113.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cavia porcellus]
Length = 156
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 28 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 87
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 88 LDLKKAIQRYVQLKQEREGGVQHISW 113
>gi|297283095|ref|XP_001082002.2| PREDICTED: hypothetical protein LOC693295 [Macaca mulatta]
Length = 266
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ SATV DLK
Sbjct: 142 LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 201
Query: 93 LAIKKKVNDMEQSNLGHRHISW 114
AI++ V ++ G +HISW
Sbjct: 202 KAIQRYVQLKQEREGGIQHISW 223
>gi|444727238|gb|ELW67739.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Tupaia
chinensis]
Length = 131
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRHVQLKQEREGGTQHISW 80
>gi|426254135|ref|XP_004020740.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Ovis aries]
Length = 123
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLRQEREGGIQHISW 80
>gi|262205517|ref|NP_001160084.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Bos taurus]
gi|160017307|sp|Q3ZBQ4.2|CP033_BOVIN RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein
gi|296473635|tpg|DAA15750.1| TPA: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Bos
taurus]
gi|431906773|gb|ELK10894.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Pteropus
alecto]
Length = 123
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLRQEREGGIQHISW 80
>gi|12859665|dbj|BAB31728.1| unnamed protein product [Mus musculus]
Length = 123
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLKQEREGGVQHISW 80
>gi|89268289|emb|CAJ82445.1| novel protein [Xenopus (Silurana) tropicalis]
Length = 175
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL ++++ I+LE G AM + + K DG V V+ +ATV
Sbjct: 47 FQEGLAMIVQDPLLCDLPIQVTLEEINSQIALEYGQAMTVRVCKADGEIMPVVVVQNATV 106
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + Q G +HISW+
Sbjct: 107 LDLKRAIQRYIQLKHQREGGIQHISWK 133
>gi|335284777|ref|XP_003124710.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Sus scrofa]
Length = 134
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
L ++ DP+L D+P + TL +V++ I+LE G AM + + K DG V V+ +ATV DLK
Sbjct: 10 LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKTDGEVMPVVVVQNATVLDLK 69
Query: 93 LAIKKKVNDMEQSNLGHRHISW 114
AI++ V ++ G +HISW
Sbjct: 70 KAIQRYVQLRQEREGGVQHISW 91
>gi|183396439|gb|ACC62114.1| U11/U12 snRNP protein (predicted) [Rhinolophus ferrumequinum]
Length = 123
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLRQEREGGIQHISW 80
>gi|262118251|ref|NP_084369.2| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Mus
musculus]
gi|395835627|ref|XP_003790778.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Otolemur garnettii]
gi|68052366|sp|Q8VIK1.1|CP033_MOUSE RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa
protein; Short=U11/U12 snRNP 25 kDa protein
gi|16973675|gb|AAL32366.1| C16ORF33 [Mus musculus]
gi|20380350|gb|AAH28766.1| Small nuclear ribonucleoprotein 25 (U11/U12) [Mus musculus]
gi|148691820|gb|EDL23767.1| RIKEN cDNA 3300001G02, isoform CRA_d [Mus musculus]
gi|149052203|gb|EDM04020.1| similar to chromosome 16 open reading frame 33; minus -99 protein
(predicted), isoform CRA_b [Rattus norvegicus]
gi|195977134|gb|ACG63681.1| U11/U12 small nuclear ribonucleoprotein protein (predicted)
[Otolemur garnettii]
Length = 123
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLKQEREGGVQHISW 80
>gi|226822865|gb|ACO83097.1| U11/U12 snRNP 25K protein (predicted) [Dasypus novemcinctus]
Length = 123
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLKQEREGGIQHISW 80
>gi|62859759|ref|NP_001016702.1| uncharacterized protein LOC549456 [Xenopus (Silurana) tropicalis]
gi|60550970|gb|AAH91616.1| hypothetical protein LOC549456 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL ++++ I+LE G AM + + K DG V V+ +ATV
Sbjct: 39 FQEGLAMIVQDPLLCDLPIQVTLEEINSQIALEYGQAMTVRVCKADGEIMPVVVVQNATV 98
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + Q G +HISW+
Sbjct: 99 LDLKRAIQRYIQLKHQREGGIQHISWK 125
>gi|432098907|gb|ELK28397.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Myotis
davidii]
Length = 123
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLRQEREGGIQHISW 80
>gi|291415424|ref|XP_002723952.1| PREDICTED: chromosome 16 open reading frame 33-like, partial
[Oryctolagus cuniculus]
Length = 174
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL ++++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 46 FQEGLAMVVQDPLLCDLPIQVTLEEINSQIALEYGQAMTVRVSKMDGEVMPVVVVQNATV 105
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 106 LDLKKAIQRYVQLKQEREGGIQHISW 131
>gi|339522115|gb|AEJ84222.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Capra
hircus]
Length = 123
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V + G +HISW
Sbjct: 62 QRYVQLRREREGGIQHISW 80
>gi|354499600|ref|XP_003511896.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Cricetulus griseus]
Length = 169
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV
Sbjct: 41 FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATV 100
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ + ++ G +HISW
Sbjct: 101 LDLKKAIQRYMQLKQEREGGIQHISW 126
>gi|148691819|gb|EDL23766.1| RIKEN cDNA 3300001G02, isoform CRA_c [Mus musculus]
Length = 123
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVTAVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 62 QRYVQLKQEREGGVQHISW 80
>gi|62955357|ref|NP_001017690.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Danio
rerio]
gi|62204893|gb|AAH93151.1| Zgc:112000 [Danio rerio]
Length = 173
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL +V++ ++LE G AM + + K DG + V+ SATV
Sbjct: 45 FEEGLALIVQDPLLCDLPIQVTLEEVNSQVALEYGQAMTVRVCKADGEVMPIVVVQSATV 104
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + +Q G +H+SW+
Sbjct: 105 LDLKKAIRRYMELKQQREGGVKHVSWK 131
>gi|47220063|emb|CAG12211.1| unnamed protein product [Tetraodon nigroviridis]
Length = 188
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L L+ DP+L D+P + TL +V++ I+LE G AM + +LK DG + V+ +ATV
Sbjct: 60 FEEGLAQLVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVLKADGEVMPIVVVQNATV 119
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + +Q G +++SW+
Sbjct: 120 LDLKKAIRRFMELKQQREGGVKYVSWR 146
>gi|126335357|ref|XP_001371960.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Monodelphis domestica]
Length = 175
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL ++++ I+LE G AM + + K+DG V V+ +AT
Sbjct: 47 FQEGLAMIVQDPLLCDLPIQVTLEEINSQIALEYGQAMTVRVCKVDGEVMPVVVVQNATT 106
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISW 114
DLK AI++ V ++ G +HISW
Sbjct: 107 LDLKKAIQRYVQLKQEREGGIQHISW 132
>gi|198438499|ref|XP_002131302.1| PREDICTED: similar to U11/U12 snRNP 25K protein isoform 1 [Ciona
intestinalis]
Length = 143
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
L LL DP+L D+P++ TL +V+ I+LE G AM I I + DG ++ V V AT+ +LK
Sbjct: 19 LDELLGDPLLNDLPQEVTLEEVNAKIALEFGQAMTIRIRRADGFTYPVIVKQDATIGELK 78
Query: 93 LAIKKKVNDMEQSNLGHRHISWQ 115
AI + V +Q G++ ISW+
Sbjct: 79 KAITRHVQLKQQREGGNQCISWR 101
>gi|344254276|gb|EGW10380.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cricetulus
griseus]
Length = 123
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ + ++ G +HISW
Sbjct: 62 QRYMQLKQEREGGIQHISW 80
>gi|410902817|ref|XP_003964890.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Takifugu rubripes]
Length = 183
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L L+ DP+L D+P + TL +V++ I+LE G AM + +LK DG + V+ +ATV
Sbjct: 55 FEEGLAQLVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVKVLKADGEVMPIVVVQNATV 114
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + +Q G + +SW+
Sbjct: 115 LDLKKAIRRFMELKQQREGGVKCVSWR 141
>gi|432868044|ref|XP_004071383.1| PREDICTED: LOW QUALITY PROTEIN: U11/U12 small nuclear
ribonucleoprotein 25 kDa protein-like [Oryzias latipes]
Length = 180
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L L+ DP+L D+P + TL +V++ I+LE G AM + K DG + V+ +ATV
Sbjct: 52 FEEGLARLVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVKXCKADGEIMPIVVVQNATV 111
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + +Q G +H+SW+
Sbjct: 112 LDLKKAIRRFMELKQQREGGVKHVSWR 138
>gi|348509153|ref|XP_003442116.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Oreochromis niloticus]
Length = 187
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L L+ DP+L D+P + TL +V++ I+LE G AM + +LK D + V+ +ATV
Sbjct: 59 FEEGLARLVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVLKADSEVMPIVVVQNATV 118
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI + + +Q G +HISW+
Sbjct: 119 LDLKKAICRFMELKQQREGGVKHISWR 145
>gi|363739485|ref|XP_423619.3| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Gallus gallus]
Length = 200
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
+ L L+ DP+L D+P + T ++ + ++LE G AM + + K DG S V V+ +A+V
Sbjct: 73 FQAALARLVQDPLLCDLPPQVTPEEIGSQVALEYGQAMTVRVCKADGESMPVVVVQNASV 132
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK A+++ V + G +H+SW+
Sbjct: 133 LDLKKALRRHVQLRQARRGGVQHLSWK 159
>gi|149052202|gb|EDM04019.1| similar to chromosome 16 open reading frame 33; minus -99 protein
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 95
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHIS 113
++ V ++ G +HIS
Sbjct: 62 QRYVQLKQEREGGVQHIS 79
>gi|148691818|gb|EDL23765.1| RIKEN cDNA 3300001G02, isoform CRA_b [Mus musculus]
Length = 119
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG V V+ +ATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61
Query: 96 KKKVNDMEQSNLGHRHIS 113
++ V ++ G +HIS
Sbjct: 62 QRYVQLKQEREGGVQHIS 79
>gi|148227336|ref|NP_001083423.1| uncharacterized protein LOC398918 [Xenopus laevis]
gi|38014507|gb|AAH60402.1| MGC68520 protein [Xenopus laevis]
Length = 168
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L ++ DP+L D+P + TL ++++ I+LE G AM + + K D V V+ +ATV
Sbjct: 40 FQEGLAMIVQDPLLCDLPIQVTLEEINSQIALEYGQAMTVRVCKEDEEIMPVVVVQNATV 99
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + Q G +HISW+
Sbjct: 100 LDLKRAIQRYIQLKHQREGGIQHISWK 126
>gi|213510978|ref|NP_001134941.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Salmo
salar]
gi|209737428|gb|ACI69583.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Salmo
salar]
Length = 188
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
L L+ DP+L D+P + TL +V++ ++LE G AM + + K DG + V+ +A V
Sbjct: 60 FEEGLARLVQDPLLCDLPIQVTLEEVNSQVALEYGQAMTVRVCKADGEVMPIVVVQNAMV 119
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DLK AI++ + +Q G +H+SW+
Sbjct: 120 LDLKKAIQRFMELKQQRVGGVKHVSWR 146
>gi|226372070|gb|ACO51660.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Rana
catesbeiana]
Length = 123
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL ++++ I+LE G AM +++ K D + V+ +ATV DLK AI
Sbjct: 2 MVQDPLLCDLPIQVTLEEINSQIALEFGQAMTVNVCKADKDIMPIVVVQNATVLDLKRAI 61
Query: 96 KKKVNDMEQSNLGHRHISWQ 115
++ + Q G +H+SW+
Sbjct: 62 QRYIQLKHQREGGIQHVSWK 81
>gi|220897509|emb|CAX15111.1| chromosome 16 open reading frame 33 [Homo sapiens]
Length = 96
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 8/79 (10%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + TL +V++ I+LE G AM + + K+DG SATV DLK AI
Sbjct: 2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDG--------ESATVLDLKKAI 53
Query: 96 KKKVNDMEQSNLGHRHISW 114
++ V ++ G +HISW
Sbjct: 54 QRYVQLKQEREGGIQHISW 72
>gi|405977277|gb|EKC41736.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Crassostrea
gigas]
Length = 171
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 39 DPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98
D +L D+P + TL +V++ I+LE G AM +++ + DG V V+ + TV DLK AIK+
Sbjct: 71 DSLLYDLPPEVTLEEVNSFIALEHGQAMLVNVQRADGEVLSVVVVQNGTVLDLKHAIKRH 130
Query: 99 VNDMEQSNLGHRHISWQ 115
+ + G +HISW+
Sbjct: 131 MTLKLSRSKGKKHISWK 147
>gi|321459551|gb|EFX70603.1| hypothetical protein DAPPUDRAFT_231603 [Daphnia pulex]
Length = 207
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 29 LHSTLTALL-DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSAT 87
+ +TL +LL DPIL D+P TL +V +LI+LE G A+ + I + DGTS V + +AT
Sbjct: 76 VRNTLDSLLATDPILNDLPSAVTLDEVQSLIALEHGQAIHVEIHREDGTSLPVIIRQNAT 135
Query: 88 VKDLKLAIKK--KVNDMEQSNLGHRHISWQ 115
V LK A+++ +++ +N R I+W+
Sbjct: 136 VGQLKRAVERATELSLSRDANQRQRRINWK 165
>gi|291223915|ref|XP_002731950.1| PREDICTED: chromosome 16 open reading frame 33-like [Saccoglossus
kowalevskii]
Length = 162
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
+ + +L DP+L+D+P T +++ I+LE G A+ + + K +G V V+ ATV
Sbjct: 34 FNDGMKEILQDPLLSDLPLDVTEEEINHQIALEYGQALTVKVRKQNGEVIPVVVLQGATV 93
Query: 89 KDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
+DL+ AIK+ + G++ ISW+ +I + C
Sbjct: 94 RDLRNAIKRHFTMKLEREGGNKFISWR-YIWKTYWLC 129
>gi|390333381|ref|XP_794255.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Strongylocentrotus purpuratus]
Length = 167
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 27 ARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSA 86
A + L +LDDP+L D+P +V+ I+LE G AM + + + +G V VM +A
Sbjct: 33 AIVRKELGEILDDPLLEDLPPDVCAEEVNLQIALEYGQAMTVIVRRAEGDVMPVVVMQTA 92
Query: 87 TVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
TV+DLK AIK+ + + ISW+ ++ S C
Sbjct: 93 TVQDLKSAIKRYFELKQDREEIKKKISWR-YVWRSYYLC 130
>gi|390337966|ref|XP_001199326.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Strongylocentrotus purpuratus]
Length = 167
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 27 ARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSA 86
A + L +LDDP+L D+P +V+ I+LE G AM + + + +G V VM +A
Sbjct: 33 AIVRKELGEILDDPLLKDLPPDVCAEEVNLQIALEYGQAMTVIVRRAEGDVMPVVVMQTA 92
Query: 87 TVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSC 125
TV+DLK AIK+ + + ISW+ ++ S C
Sbjct: 93 TVQDLKSAIKRYFELKQDREEIKKKISWR-YVWRSYYLC 130
>gi|443722217|gb|ELU11180.1| hypothetical protein CAPTEDRAFT_157309 [Capitella teleta]
Length = 174
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
++ DP+L D+P + T+ ++ + I+LE G AM +++ + D + V+ +ATV DLK AI
Sbjct: 54 IVGDPLLQDLPSQVTVEEIRSQIALEHGQAMTVNVRRGDDKVLPIVVLQNATVADLKKAI 113
Query: 96 KKKVN-DMEQSNLGHRHISWQ 115
+ + ++ + G RHISW+
Sbjct: 114 RHYFHLNLNRDGDGDRHISWR 134
>gi|327289177|ref|XP_003229301.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Anolis carolinensis]
Length = 151
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TSFDVAVMNSATVKD 90
L L+ DP+L D+P + T ++ + ++LE G AM + + + D V V+ +A+V D
Sbjct: 26 LARLVRDPLLCDLPAQVTPEEISSQVALEYGQAMTVRVRRADAPEAPLPVVVVQNASVLD 85
Query: 91 LKLAIKKKVNDMEQSNLGHRHISWQ 115
LK A+++ V ++ G +HISW+
Sbjct: 86 LKRALRRFVQLRQEREGGIQHISWR 110
>gi|335308396|ref|XP_003361215.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Sus scrofa]
Length = 109
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH 109
TL +V++ I+LE G AM + + K DG V V+ +ATV DLK AI++ V ++ G
Sbjct: 2 TLEEVNSQIALEYGQAMTVRVCKTDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGV 61
Query: 110 RHISW 114
+HISW
Sbjct: 62 QHISW 66
>gi|18463966|gb|AAL73047.1| C16ORF33 [Sphoeroides nephelus]
Length = 109
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH 109
TL +V++ I+LE G AM + +LK DG + V+ +ATV DLK AI++ + +Q G
Sbjct: 2 TLEEVNSQIALEYGQAMTVRVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGV 61
Query: 110 RHISWQ 115
+++SW+
Sbjct: 62 KYVSWR 67
>gi|395515604|ref|XP_003761991.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
[Sarcophilus harrisii]
Length = 168
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH 109
TL ++++ I+LE G AM + + K+DG V V+ +AT DLK AI++ V ++ G
Sbjct: 61 TLEEINSQIALEYGQAMTVRVCKVDGEVMPVVVVQNATTLDLKKAIQRYVQLKQEREGGI 120
Query: 110 RHISW 114
+HISW
Sbjct: 121 QHISW 125
>gi|260814781|ref|XP_002602092.1| hypothetical protein BRAFLDRAFT_61248 [Branchiostoma floridae]
gi|229287398|gb|EEN58104.1| hypothetical protein BRAFLDRAFT_61248 [Branchiostoma floridae]
Length = 136
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
L+ DP+L+D+P TL +V + I+LE G AM++ + K G + V ATV DLK AI
Sbjct: 11 LVKDPLLSDLPAGVTLDEVKSQIALEYGQAMKVIVRKECGGIMPIVVPQDATVVDLKHAI 70
Query: 96 KKKVNDMEQSNLGHRHISWQ 115
+ V + G ISW+
Sbjct: 71 SRYVTLKQTREGGTTKISWR 90
>gi|149496551|ref|XP_001514542.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like, partial [Ornithorhynchus anatinus]
Length = 109
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGH 109
TL ++++ I+LE G AM + + K+D V V+ +ATV DLK AI++ V ++ G
Sbjct: 2 TLEEINSQIALEYGQAMTVRVCKVDEEVIPVVVVQNATVLDLKKAIQRSVQLRQEREGGT 61
Query: 110 RHISW 114
+HISW
Sbjct: 62 QHISW 66
>gi|156365484|ref|XP_001626675.1| predicted protein [Nematostella vectensis]
gi|156213561|gb|EDO34575.1| predicted protein [Nematostella vectensis]
Length = 154
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKD 90
L+ ++ DP+L +P +PT+ ++ ++LE G A+ +++ + D T V V+ ATV D
Sbjct: 28 LSKVMQDPLLVGLPSEPTVEEITAQLALEHGLAIMVNVRQQDKMATILPVVVVQDATVLD 87
Query: 91 LKLAIKKKVNDMEQSNLGHRHISWQ 115
LK AI++ + + G +ISW+
Sbjct: 88 LKKAIQRHITLKQTREGGATYISWK 112
>gi|340371622|ref|XP_003384344.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Amphimedon queenslandica]
Length = 143
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 36 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
+L DP L D+ + +L +V + ++LE G AM +++ KLD TSF V V+ ATV +L+ ++
Sbjct: 20 ILKDPFLKDLSPEISLDEVQSRLALEQGRAMTLNVQKLDNTSFPVIVLQGATVHELRKSV 79
Query: 96 K 96
+
Sbjct: 80 E 80
>gi|442756633|gb|JAA70475.1| Putative cytochrome c oxidase subunit cox19 [Ixodes ricinus]
Length = 164
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 13 EVEVGDYNSSTMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILK 72
E E+ +++ + A++H+ ++ +DP+L+++ + T+ ++ + ++LE G AM + +L+
Sbjct: 23 EKELSFHDAMAIADAKIHALIS---NDPLLSNLHPEVTVEELRSYLALEHGQAMSLRVLR 79
Query: 73 LDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
DG + V V ATV DLK A+++ R +SW+
Sbjct: 80 ADGDPYTVVVEQKATVLDLKKALQRHATLRMARKGVKRVVSWR 122
>gi|297808549|ref|XP_002872158.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317995|gb|EFH48417.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+R+S+LKLDG+SFDV V+ SATV DLK+AI+ + + + G ISW
Sbjct: 19 IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKK--GPSKISW 65
>gi|241163699|ref|XP_002409330.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
[Ixodes scapularis]
gi|215494528|gb|EEC04169.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
[Ixodes scapularis]
Length = 136
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 40/60 (66%)
Query: 38 DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97
+DP+L+++ + T+ ++ + ++LE G AM + +L+ DG + V V AT+ DLK A+++
Sbjct: 17 NDPLLSNLHPEVTVEELRSYLALEHGQAMSLRVLRADGDPYTVVVEQKATILDLKKALQR 76
>gi|15239396|ref|NP_197916.1| ubiquitin-like domain-containing protein-like protein [Arabidopsis
thaliana]
gi|26451503|dbj|BAC42849.1| unknown protein [Arabidopsis thaliana]
gi|28973251|gb|AAO63950.1| unknown protein [Arabidopsis thaliana]
gi|332006045|gb|AED93428.1| ubiquitin-like domain-containing protein-like protein [Arabidopsis
thaliana]
Length = 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+R+S+LKLDG+SFDV V+ SATV DLK+AI+ + + + G ISW
Sbjct: 19 IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKK--GPSKISW 65
>gi|21554720|gb|AAM63670.1| unknown [Arabidopsis thaliana]
Length = 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+R+S+LKLDG+SFDV V+ SATV DLK+AI+ + + + G ISW
Sbjct: 19 IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKK--GPSKISW 65
>gi|255548890|ref|XP_002515501.1| hypothetical protein RCOM_0923760 [Ricinus communis]
gi|223545445|gb|EEF46950.1| hypothetical protein RCOM_0923760 [Ricinus communis]
Length = 571
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++SILKLDG+ FDV VM SATV +L+ AI+ + M + G ISW
Sbjct: 56 LKLSILKLDGSCFDVEVMKSATVAELRQAIEAVFSHMPRKGPG--KISW 102
>gi|224089270|ref|XP_002308669.1| predicted protein [Populus trichocarpa]
gi|222854645|gb|EEE92192.1| predicted protein [Populus trichocarpa]
Length = 292
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+R+S+LKLD +SF++ VM SATV++L+ A++ + M Q G ISW
Sbjct: 79 LRLSVLKLDASSFEIEVMKSATVEELRQAVEAAFSYMPQEGPG--KISW 125
>gi|357437001|ref|XP_003588776.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
gi|355477824|gb|AES59027.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
truncatula]
Length = 266
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLG 108
P S L +R+S+LKLDGTSFDV V +AT+ +LK A++ + M Q G
Sbjct: 31 PIFSTKSLLYDKLPSEPLRLSVLKLDGTSFDVHVSKNATIAELKDAVEGVFSYMPQH--G 88
Query: 109 HRHISW 114
ISW
Sbjct: 89 PAKISW 94
>gi|388501394|gb|AFK38763.1| unknown [Medicago truncatula]
Length = 226
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+R+S+LKLDGTSFDV V +AT+ +LK A++ + M Q G ISW
Sbjct: 48 LRLSVLKLDGTSFDVHVSKNATIAELKDAVEGVFSYMPQH--GPAKISW 94
>gi|440795556|gb|ELR16676.1| hypothetical protein ACA1_089240 [Acanthamoeba castellanii str.
Neff]
Length = 185
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 9 AKEEEVEVGDYNSSTMKKARLHSTLTALLDDPILADVPK-KPTLSD-------------- 53
AK E + D NS A+ L DP+LAD P+ + L++
Sbjct: 4 AKREVAALHDRNSQLTDSAK-EVLFGHFLSDPVLADYPQLRHALTEEGRGKRKWAAQVEL 62
Query: 54 VDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLG-HRHI 112
+D LI+ E+G A I +LK DG + V + + +LK ++ V+ LG R I
Sbjct: 63 LDALIAQEVGEAFSIYVLKHDGKRIPLVVTYTTMLDELKRQLQLVVDHQTAERLGPTRRI 122
Query: 113 SWQ 115
+W+
Sbjct: 123 NWK 125
>gi|427786405|gb|JAA58654.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 168
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 38 DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97
+DP+L ++ + T ++ ++LE G AM + + K +G + V V ATV DLK AI++
Sbjct: 49 NDPLLNNLHPEVTTDELKLYLALEHGQAMSLVVHKANGDYYTVVVEQKATVLDLKKAIRR 108
Query: 98 KV 99
V
Sbjct: 109 HV 110
>gi|449437400|ref|XP_004136480.1| PREDICTED: uncharacterized protein LOC101219460 [Cucumis sativus]
Length = 277
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+S+LKLDG+SFD+ V SATV +LK A++ + M Q G ISW
Sbjct: 59 LSVLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPG--KISW 103
>gi|159163176|pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
3300001g02) Product Homologous To Ubiquitin Fold
Length = 105
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
S M + + K+DG V V+ +ATV DLK AI++ V ++ G +HISW
Sbjct: 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISW 56
>gi|449520183|ref|XP_004167113.1| PREDICTED: uncharacterized LOC101219460 [Cucumis sativus]
Length = 277
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+S+LKLDG+SFD+ V SATV +LK A++ + M Q G ISW
Sbjct: 59 LSVLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPG--KISW 103
>gi|358253653|dbj|GAA53569.1| hypothetical protein CLF_110537 [Clonorchis sinensis]
Length = 234
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 44 DVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96
D+P+ P+ VD L+ L G AM++++L+ D V V +A V++L+ A++
Sbjct: 68 DLPRLPSAKHVDDLLRLHFGQAMKLTLLRGDDVELPVVVSITACVRELQRAVQ 120
>gi|346473065|gb|AEO36377.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 28 RLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSAT 87
++H+ +++ DP+L ++ + T ++ + ++LE G AM + + K D + V V AT
Sbjct: 45 KIHALISS---DPLLNNLHPEVTTDELKSYLALEHGQAMSLVVHKADNDYYTVVVEQKAT 101
Query: 88 VKDLKLAIKKKVNDMEQSNLG-HRHISWQ 115
V DLK A+++ V + + G R +SW+
Sbjct: 102 VLDLKKALRRHVT-LRMARKGVKRVLSWK 129
>gi|297743473|emb|CBI36340.3| unnamed protein product [Vitis vinifera]
Length = 630
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
++SILKLDGTSFDV V +A V +LK AI++ + +N +ISW
Sbjct: 50 KLSILKLDGTSFDVQVARNAKVAELKQAIEEVFS--LSTNEDEENISW 95
>gi|2864616|emb|CAA16963.1| hypothetical protein [Arabidopsis thaliana]
gi|7270131|emb|CAB79945.1| hypothetical protein [Arabidopsis thaliana]
Length = 364
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++++LKLDG+SF + V+ +ATV +LK+A++ + + S G ISW
Sbjct: 228 IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG--KISW 274
>gi|145351239|ref|NP_194954.2| ubiquitin-like family protein [Arabidopsis thaliana]
gi|26450559|dbj|BAC42392.1| unknown protein [Arabidopsis thaliana]
gi|332660628|gb|AEE86028.1| ubiquitin-like family protein [Arabidopsis thaliana]
Length = 239
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++++LKLDG+SF + V+ +ATV +LK+A++ + + S G ISW
Sbjct: 38 IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG--KISW 84
>gi|388521043|gb|AFK48583.1| unknown [Lotus japonicus]
Length = 220
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 50 TLSDVDTLI---SLEMG----SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102
T+S +DT+ S G R+S+LKLDG+SFD+ V +A++ +LK A++ + M
Sbjct: 25 TISIIDTIFAKKSFLYGKLPSQPFRLSVLKLDGSSFDIQVSKTASIAELKDAVEAVFSHM 84
Query: 103 EQSNLGHRHISW 114
+ G ISW
Sbjct: 85 PEK--GPAKISW 94
>gi|297798732|ref|XP_002867250.1| hypothetical protein ARALYDRAFT_491506 [Arabidopsis lyrata subsp.
lyrata]
gi|297313086|gb|EFH43509.1| hypothetical protein ARALYDRAFT_491506 [Arabidopsis lyrata subsp.
lyrata]
Length = 237
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++++LKLDG+SF + V+ +ATV +LK+A++ + + S G ISW
Sbjct: 37 IKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG--KISW 83
>gi|388519459|gb|AFK47791.1| unknown [Lotus japonicus]
Length = 269
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 50 TLSDVDTLI---SLEMG----SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102
T+S +DT+ S G R+S+LKLDG+SFD+ V +A++ +LK A++ + M
Sbjct: 25 TISIIDTIFAKKSFLYGKLPSQPFRLSVLKLDGSSFDIQVSKTASIAELKDAVEAVFSHM 84
Query: 103 EQSNLGHRHISW 114
+ G ISW
Sbjct: 85 PEK--GPAKISW 94
>gi|225442930|ref|XP_002265295.1| PREDICTED: uncharacterized protein LOC100262712 [Vitis vinifera]
Length = 232
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN---DMEQSNLGHRHISWQVF 117
++SILKLDGTSFDV V +A V +LK AI++ + + ++ N+ H+ W F
Sbjct: 49 YKLSILKLDGTSFDVQVARNAKVAELKQAIEEVFSLSTNEDEENISWSHV-WGHF 102
>gi|255553225|ref|XP_002517655.1| conserved hypothetical protein [Ricinus communis]
gi|223543287|gb|EEF44819.1| conserved hypothetical protein [Ricinus communis]
Length = 274
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 69 SILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
++LKLDG+SFDV + +ATV +LK A+++ + + GH ISW
Sbjct: 77 TVLKLDGSSFDVNIGRNATVAELKQAVEEIFSSSPEE--GHDKISW 120
>gi|339238065|ref|XP_003380587.1| putative STAS domain protein [Trichinella spiralis]
gi|316976515|gb|EFV59800.1| putative STAS domain protein [Trichinella spiralis]
Length = 900
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 36 LLDDPILAD-VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94
L +DP L + + K T+ ++ I++ +++I I + DG + ++ + +ATVK+LK
Sbjct: 663 LKNDPFLKNSLSSKVTIDELRQEIAILQNGSLKIFIRRFDGKTIEIDIDKNATVKELKKV 722
Query: 95 IKKKVNDMEQSNLGHRHISW 114
I++ + + +HI+W
Sbjct: 723 IQRTFSRKLYNESSIKHINW 742
>gi|449674293|ref|XP_002156888.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
protein-like [Hydra magnipapillata]
Length = 154
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFD---VAVMNSATVK 89
L LL+D +L D+P T D+ I+LE G A + + + T F+ + V + +
Sbjct: 27 LQKLLNDALLKDLPNDVTSKDLKAKIALEKGRAFIVYLKRATETGFEDIPLIVDHKTKLI 86
Query: 90 DLKLAIKKKVNDMEQSNLGHRHISWQVF 117
DLKL +++ ++ + G +SW+ F
Sbjct: 87 DLKLNVQRTLSRKIKEEKGTSCLSWKYF 114
>gi|116779533|gb|ABK21326.1| unknown [Picea sitchensis]
Length = 186
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND--MEQSNLGHRHISWQVF 117
++R+ I ++D TSFDV+V +A+V +LK AI+ K + ME+ + H+ W F
Sbjct: 27 GSIRLCIFRMDNTSFDVSVPGTASVLELKKAIEDKFGNSQMEEGKISWCHV-WGNF 81
>gi|116784054|gb|ABK23196.1| unknown [Picea sitchensis]
Length = 186
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND--MEQSNLGHRHISWQVF 117
++R+ I ++D TSFDV+V +A+V +LK AI+ K + ME+ + H+ W F
Sbjct: 27 GSIRLCIFRMDNTSFDVSVPGTASVLELKKAIEDKFGNSQMEEGKISWCHV-WGNF 81
>gi|356518246|ref|XP_003527790.1| PREDICTED: uncharacterized protein LOC100790105 [Glycine max]
Length = 258
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 68 ISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLG 108
+SILKLD +SF V V N+ATV +LK A++ + + Q G
Sbjct: 42 LSILKLDASSFHVEVANAATVAELKQAVEAVFSHVPQKGPG 82
>gi|255572471|ref|XP_002527170.1| conserved hypothetical protein [Ricinus communis]
gi|223533435|gb|EEF35183.1| conserved hypothetical protein [Ricinus communis]
Length = 114
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLG 108
P+L+ V R+S+LKL+G+ F+V V ATV +LK A++ + ++
Sbjct: 6 PSLTCVSFAYERLPQEQFRLSVLKLNGSFFEVQVSRMATVGELKQAVENVFTHSPEDDM- 64
Query: 109 HRHISW 114
H +ISW
Sbjct: 65 HMNISW 70
>gi|242064292|ref|XP_002453435.1| hypothetical protein SORBIDRAFT_04g006000 [Sorghum bicolor]
gi|241933266|gb|EES06411.1| hypothetical protein SORBIDRAFT_04g006000 [Sorghum bicolor]
Length = 274
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
+R+++ KLD + FD+ + SATV +LK+AI+ +D+ + ISW
Sbjct: 59 LRLTVQKLDDSFFDIEIARSATVWELKVAIENLFSDLYDD--AQKTISWN 106
>gi|357604352|gb|EHJ64146.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Danaus
plexippus]
Length = 150
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 34 TALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKL 93
T D +L+D+P L ++ + ++E G ++ + + + D V V ++TV++LK
Sbjct: 26 TLFKSDSLLSDLPSDIILEEILSQTAVEHGQSITVIVSREDEQPLKVIVPQNSTVRELKK 85
Query: 94 AIKKKVNDMEQSNLGHR-HISWQ 115
A+ + ++ Q +G+R ISW+
Sbjct: 86 AVARHF-ELYQQRMGNRVKISWR 107
>gi|119187205|ref|XP_001244209.1| hypothetical protein CIMG_03650 [Coccidioides immitis RS]
gi|392870926|gb|EAS32772.2| hypothetical protein CIMG_03650 [Coccidioides immitis RS]
Length = 417
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
L ++LD P+ + VP +P L + S GS+ I+ LD + V N T+ D
Sbjct: 74 LRSILDHPLFSTVPHRPALRQTQNVQS---GSSTEDPIVALD-RAIASGVANINTIHDCL 129
Query: 93 LAIKKKVND---------MEQSNLGHRHISW 114
+ ++N M+ S +GHR ISW
Sbjct: 130 RRHRLQINGLPRAEMRARMKNSKIGHRIISW 160
>gi|356509914|ref|XP_003523687.1| PREDICTED: uncharacterized protein LOC100781177 [Glycine max]
Length = 259
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 68 ISILKLDGTSFDVAVMNSATVKDLKLAIK 96
+SILKLD +SF V V N+ATV +LK A++
Sbjct: 39 LSILKLDASSFHVEVANAATVAELKQAVE 67
>gi|296082049|emb|CBI21054.3| unnamed protein product [Vitis vinifera]
Length = 251
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++S+LKLDG+ F + V ++TV +LK A++ + + + G ISW
Sbjct: 45 IKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPG--KISW 91
>gi|147846512|emb|CAN81657.1| hypothetical protein VITISV_042595 [Vitis vinifera]
Length = 283
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
+++S+LKLDG+ F + V ++TV +LK A++ + + + G ISW
Sbjct: 45 IKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPG--KISW 91
>gi|303317196|ref|XP_003068600.1| hypothetical protein CPC735_006270 [Coccidioides posadasii C735
delta SOWgp]
gi|240108281|gb|EER26455.1| hypothetical protein CPC735_006270 [Coccidioides posadasii C735
delta SOWgp]
gi|320038520|gb|EFW20455.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 416
Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 33 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
L ++LD P+ + VP +P L + S GS+ I+ LD + V N T+ D
Sbjct: 73 LRSILDHPLFSTVPHRPALRQTQNVQS---GSSTEDPIVALD-RAIASGVANINTLHDCL 128
Query: 93 LAIKKKVND---------MEQSNLGHRHISW 114
+ ++N M+ S +GHR +SW
Sbjct: 129 RRHRLQINGLPRAEMRARMKNSKIGHRIVSW 159
>gi|307182451|gb|EFN69686.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Camponotus
floridanus]
Length = 184
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 6 SCGAKEEEVEVGDYNSSTMKKARLHSTLTALL-DDPILADVPKKPTLSDVDTLISLEMGS 64
SC KE+ V + +K R+ T+ ++ +DP+L+ +P T+ ++ + I++ G
Sbjct: 26 SCAEKEKSETVRFSHQELIKLTRM--TIDNMIKNDPLLSGLPSDVTIEEIKSQIAVAQGQ 83
Query: 65 AMRISILKLDGTSFDVAVM-NSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115
A+ + + + + V V ++ TV DLK AIK+ +N + + ISW+
Sbjct: 84 AITLFLNRGELPKLAVVVPPHNTTVLDLKKAIKRHMNLSLKREDVKKKISWK 135
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,750,735,603
Number of Sequences: 23463169
Number of extensions: 56640779
Number of successful extensions: 128204
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 128071
Number of HSP's gapped (non-prelim): 142
length of query: 128
length of database: 8,064,228,071
effective HSP length: 94
effective length of query: 34
effective length of database: 10,153,657,481
effective search space: 345224354354
effective search space used: 345224354354
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)