BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033077
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
           3300001g02) Product Homologous To Ubiquitin Fold
          Length = 105

 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 64  SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 114
           S M + + K+DG    V V+ +ATV DLK AI++ V   ++   G +HISW
Sbjct: 6   SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISW 56


>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
           Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
 pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
           Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
          Length = 109

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 57  LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94
           ++ L   S   +++L LDG S++ AV N   +K+L +A
Sbjct: 67  VVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDIA 104


>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
           Of Human Gne Protein
 pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
           Of Human Gne Protein
 pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
           Of Human Gne Protein
          Length = 333

 Score = 25.8 bits (55), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 45  VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84
           VPK   +  +  + + ++G+A   SIL+  GT+  + V+N
Sbjct: 229 VPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVN 268


>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of N-Acetylmannosamine
           Kinase: Insights About Substrate Specificity, Activity
           And Inhibitor Modelling
          Length = 343

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 45  VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84
           VPK   +  +  + + ++G+A   SIL+  GT+  + V+N
Sbjct: 239 VPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVN 278


>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
           Acetylmannosamine And Adp
 pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
           With N-Acetyl Mannosamine 6-Phosphate And Adp
          Length = 343

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 45  VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84
           VPK   +  +  + + ++G+A   SIL+  GT+  + V+N
Sbjct: 239 VPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVN 278


>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
           Sr-Bi With The Adaptor Protein Pdzk1
 pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
           Sr-Bi With The Adaptor Protein Pdzk1
          Length = 106

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 57  LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDL 91
           ++ L   S   +++L LDG S++ AV N   +K+L
Sbjct: 66  VVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKEL 100


>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
           Domain-Containing Protein 1
          Length = 114

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 57  LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDL 91
           ++ L   S   +++L LDG S++ AV N   +K+L
Sbjct: 78  VVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKEL 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,323,042
Number of Sequences: 62578
Number of extensions: 103666
Number of successful extensions: 184
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)