BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033077
         (128 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BV90|SNR25_HUMAN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo
           sapiens GN=SNRNP25 PE=1 SV=1
          Length = 132

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 29  LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88
               L  ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ SATV
Sbjct: 4   FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63

Query: 89  KDLKLAIKKKVNDMEQSNLGHRHISW 114
            DLK AI++ V   ++   G +HISW
Sbjct: 64  LDLKKAIQRYVQLKQEREGGIQHISW 89


>sp|Q3ZBQ4|SNR25_BOVIN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos
           taurus GN=SNRNP25 PE=2 SV=2
          Length = 123

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 52/79 (65%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 96  KKKVNDMEQSNLGHRHISW 114
           ++ V   ++   G +HISW
Sbjct: 62  QRYVQLRQEREGGIQHISW 80


>sp|Q8VIK1|SNR25_MOUSE U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus
           musculus GN=Snrnp25 PE=1 SV=1
          Length = 123

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 52/79 (65%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 96  KKKVNDMEQSNLGHRHISW 114
           ++ V   ++   G +HISW
Sbjct: 62  QRYVQLKQEREGGVQHISW 80


>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
           SV=2
          Length = 371

 Score = 33.1 bits (74), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 46  PKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
           P+ P     D+  SL +  A    + KL+G  FDV V  +  VK LK
Sbjct: 261 PRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVPKARVVKQLK 307


>sp|B8DVU1|OBG_BIFA0 GTPase obg OS=Bifidobacterium animalis subsp. lactis (strain AD011)
           GN=obg PE=3 SV=1
          Length = 570

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 37  LDDPILA-DVPKKP---TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLK 92
           LD P+ A  +P++P    L+ +D   + E+   +R    KLD   ++++  + A +K+L 
Sbjct: 282 LDLPLGAIPIPERPRVIILNKIDVPDAKELADFVRPEFEKLDLPVYEISTASHAGLKELN 341

Query: 93  LAIKKKVNDM 102
            A+ K V +M
Sbjct: 342 FALAKLVKEM 351


>sp|Q54QQ1|PHG2_DICDI Serine/threonine-protein kinase phg2 OS=Dictyostelium discoideum
           GN=phg2 PE=1 SV=1
          Length = 1387

 Score = 29.6 bits (65), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 50  TLSDVDTLISLEMGSAMRISIL----KLDGTSFDVAVMNSATVKDLKLAIKKKV 99
           +L+D    +S++    MR+        LDGT F +AV N  + KD+  ++++K+
Sbjct: 573 SLADRKNRLSVQPKDIMRLMRFYFGDSLDGTFFTIAVQNDTSAKDVCASVEQKL 626


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,128,369
Number of Sequences: 539616
Number of extensions: 1378940
Number of successful extensions: 3119
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 15
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)