Query 033077
Match_columns 128
No_of_seqs 71 out of 73
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 99.9 3.1E-22 1.1E-26 143.6 7.3 66 62-127 4-69 (105)
2 3mtn_B UBA80, ubcep1, ubiquiti 97.8 4.2E-05 1.5E-09 49.0 5.8 39 63-101 1-39 (85)
3 3n3k_B Ubiquitin; hydrolase, p 97.7 4.4E-05 1.5E-09 49.1 4.3 39 63-101 1-39 (85)
4 3dbh_I NEDD8; cell cycle, acti 97.5 0.00027 9.3E-09 45.7 5.9 40 62-101 9-48 (88)
5 4hcn_B Polyubiquitin, ubiquiti 97.4 0.0002 6.9E-09 48.4 5.0 42 60-101 17-58 (98)
6 3a9j_A Ubiquitin; protein comp 97.4 0.00024 8.3E-09 44.3 4.9 36 66-101 1-36 (76)
7 3v6c_B Ubiquitin; structural g 97.4 0.00035 1.2E-08 46.3 5.9 42 60-101 12-53 (91)
8 1sif_A Ubiquitin; hydrophobic 97.4 0.00027 9.2E-09 47.0 5.0 40 62-101 6-45 (88)
9 2dzi_A Ubiquitin-like protein 97.3 0.00043 1.5E-08 44.0 5.5 37 64-100 6-42 (81)
10 1ndd_A NEDD8, protein (ubiquit 97.3 0.00037 1.3E-08 43.4 5.0 36 66-101 1-36 (76)
11 4eew_A Large proline-rich prot 97.3 0.0006 2.1E-08 44.5 6.1 42 60-101 12-53 (88)
12 3phx_B Ubiquitin-like protein 97.2 0.00073 2.5E-08 43.2 5.8 38 64-101 3-40 (79)
13 3k9o_B Ubiquitin, UBB+1; E2-25 97.2 0.00049 1.7E-08 45.5 5.0 36 66-101 2-37 (96)
14 2kk8_A Uncharacterized protein 97.2 0.00085 2.9E-08 44.6 5.9 40 62-101 7-46 (84)
15 3vdz_A Ubiquitin-40S ribosomal 97.2 0.00032 1.1E-08 48.8 3.9 41 61-101 31-71 (111)
16 4fbj_B NEDD8; effector-HOST ta 97.1 0.00074 2.5E-08 44.8 5.0 36 66-101 1-36 (88)
17 4dwf_A HLA-B-associated transc 97.1 0.0014 4.6E-08 43.0 6.0 38 64-101 4-41 (90)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 97.1 0.00098 3.3E-08 43.2 5.2 37 64-100 6-42 (87)
19 2bwf_A Ubiquitin-like protein 97.0 0.0013 4.5E-08 41.3 5.4 36 65-101 4-39 (77)
20 1yx5_B Ubiquitin; proteasome, 97.0 0.00084 2.9E-08 45.0 4.7 35 66-100 1-35 (98)
21 2wyq_A HHR23A, UV excision rep 97.0 0.0015 5.1E-08 42.0 5.5 35 65-99 5-39 (85)
22 2hj8_A Interferon-induced 17 k 96.9 0.0021 7.2E-08 42.4 6.0 37 64-100 3-39 (88)
23 1wia_A Hypothetical ubiquitin- 96.9 0.0011 3.8E-08 44.1 4.3 36 64-99 6-41 (95)
24 2ojr_A Ubiquitin; lanthide-bin 96.9 0.0021 7.3E-08 44.4 5.8 38 64-101 34-71 (111)
25 1uel_A HHR23B, UV excision rep 96.9 0.0016 5.5E-08 43.7 4.9 34 66-99 1-34 (95)
26 2uyz_B Small ubiquitin-related 96.8 0.0029 9.9E-08 40.3 5.5 38 64-101 2-39 (79)
27 1wy8_A NP95-like ring finger p 96.7 0.003 1E-07 41.1 5.4 37 64-100 6-44 (89)
28 2faz_A Ubiquitin-like containi 96.7 0.0034 1.2E-07 39.8 5.4 37 65-101 2-40 (78)
29 3b08_A Polyubiquitin-C, ubiqui 96.7 0.0024 8.2E-08 44.5 4.9 36 66-101 1-36 (152)
30 1ttn_A DC-UBP, dendritic cell- 96.6 0.0027 9.1E-08 43.6 4.6 40 61-100 19-58 (106)
31 1wx8_A Riken cDNA 4931431F19; 96.5 0.0057 1.9E-07 40.6 5.7 36 64-100 16-51 (96)
32 1v86_A DNA segment, CHR 7, way 96.5 0.0054 1.8E-07 41.5 5.4 37 64-101 16-52 (95)
33 1uh6_A Ubiquitin-like 5; beta- 96.4 0.0068 2.3E-07 42.8 6.0 40 62-101 24-64 (100)
34 3b1l_X E3 ubiquitin-protein li 95.4 0.0005 1.7E-08 43.4 0.0 35 66-100 1-35 (76)
35 1wyw_B Ubiquitin-like protein 96.4 0.0078 2.7E-07 40.6 5.7 41 61-101 17-57 (97)
36 1wgd_A Homocysteine-responsive 96.3 0.0052 1.8E-07 40.8 4.6 36 64-99 6-43 (93)
37 2kd0_A LRR repeats and ubiquit 96.3 0.0079 2.7E-07 39.8 5.3 40 62-101 8-47 (85)
38 3m62_B UV excision repair prot 96.2 0.0033 1.1E-07 43.3 3.3 36 66-101 2-37 (106)
39 2klc_A Ubiquilin-1; ubiquitin- 96.2 0.011 3.8E-07 40.3 5.8 39 62-101 22-60 (101)
40 3u30_A Ubiquitin, linear DI-ub 96.2 0.0082 2.8E-07 43.7 5.5 41 61-101 16-56 (172)
41 3b08_A Polyubiquitin-C, ubiqui 96.1 0.013 4.4E-07 40.8 5.9 38 63-100 74-111 (152)
42 1yqb_A Ubiquilin 3; structural 96.1 0.012 4.2E-07 40.1 5.7 37 64-101 21-57 (100)
43 3rt3_B Ubiquitin-like protein 96.1 0.0081 2.8E-07 42.9 4.9 37 65-101 2-38 (159)
44 1we6_A Splicing factor, putati 96.1 0.013 4.4E-07 40.3 5.8 39 62-100 24-66 (111)
45 1wx7_A Ubiquilin 3; ubiquitin- 96.0 0.014 4.7E-07 39.8 5.7 37 64-101 16-52 (106)
46 2kan_A Uncharacterized protein 96.0 0.014 4.6E-07 39.5 5.5 39 62-101 12-50 (94)
47 3m63_B Ubiquitin domain-contai 96.0 0.0036 1.2E-07 43.0 2.6 42 59-101 22-63 (101)
48 2dzm_A FAS-associated factor 1 96.0 0.015 5.3E-07 40.6 5.8 39 66-104 9-47 (100)
49 2l7r_A Ubiquitin-like protein 96.0 0.013 4.3E-07 39.3 5.1 38 62-101 16-53 (93)
50 1wf9_A NPL4 family protein; be 95.9 0.013 4.5E-07 40.4 5.2 36 64-100 6-42 (107)
51 3l0w_B Monoubiquitinated proli 95.9 0.011 3.7E-07 44.1 4.9 35 66-100 1-35 (169)
52 1v5o_A 1700011N24RIK protein; 95.8 0.019 6.6E-07 39.0 5.7 37 65-101 7-47 (102)
53 3q3f_A Ribonuclease/ubiquitin 95.8 0.015 5E-07 44.9 5.6 37 65-101 105-141 (189)
54 1j8c_A Ubiquitin-like protein 95.8 0.019 6.6E-07 40.9 5.9 37 63-100 30-66 (125)
55 3rt3_B Ubiquitin-like protein 95.8 0.019 6.6E-07 40.9 5.8 39 63-101 79-117 (159)
56 2kdi_A Ubiquitin, vacuolar pro 95.8 0.017 5.9E-07 40.3 5.3 39 63-101 7-45 (114)
57 1wgg_A Ubiquitin carboxyl-term 95.7 0.019 6.5E-07 39.0 5.3 37 64-101 6-43 (96)
58 2kzr_A Ubiquitin thioesterase 95.7 0.0063 2.2E-07 40.1 2.7 35 66-101 1-36 (86)
59 1v5t_A 8430435I17RIK protein; 95.7 0.0081 2.8E-07 40.0 3.2 37 64-101 6-43 (90)
60 3u5e_m 60S ribosomal protein L 95.6 0.0019 6.5E-08 45.8 0.0 36 66-101 1-36 (128)
61 2gow_A HCG-1 protein, ubiquiti 95.6 0.019 6.6E-07 41.6 5.3 37 62-98 14-50 (125)
62 2kdb_A Homocysteine-responsive 95.5 0.022 7.5E-07 39.4 5.1 36 64-99 22-59 (99)
63 1wju_A NEDD8 ultimate buster-1 95.4 0.028 9.4E-07 39.7 5.3 38 63-101 14-55 (100)
64 1wxv_A BAG-family molecular ch 95.4 0.032 1.1E-06 36.7 5.3 36 64-100 6-46 (92)
65 2dzj_A Synaptic glycoprotein S 95.3 0.025 8.7E-07 38.0 4.7 34 66-99 11-47 (88)
66 1wgh_A Ubiquitin-like 3, HCG-1 95.3 0.034 1.1E-06 39.9 5.5 35 64-98 15-49 (116)
67 4a20_A Ubiquitin-like protein 94.9 0.048 1.6E-06 37.7 5.1 36 63-98 17-55 (98)
68 1x1m_A Ubiquitin-like protein 94.8 0.022 7.4E-07 39.1 3.3 35 65-99 12-58 (107)
69 3plu_A Ubiquitin-like modifier 94.8 0.067 2.3E-06 37.5 5.8 40 62-101 18-57 (93)
70 3u30_A Ubiquitin, linear DI-ub 94.6 0.069 2.4E-06 38.8 5.6 38 64-101 95-132 (172)
71 1we7_A SF3A1 protein; structur 94.5 0.056 1.9E-06 37.4 4.9 37 64-100 24-70 (115)
72 2lxa_A Ubiquitin-like protein 94.4 0.037 1.3E-06 37.4 3.6 34 66-99 2-38 (87)
73 3ai5_A Yeast enhanced green fl 94.4 0.067 2.3E-06 44.2 5.8 40 62-101 230-269 (307)
74 3u5c_f 40S ribosomal protein S 94.1 0.0088 3E-07 44.5 0.0 35 66-100 1-35 (152)
75 1wjn_A Tubulin-folding protein 94.0 0.075 2.6E-06 35.6 4.6 38 64-101 8-48 (97)
76 4dbg_A Ranbp-type and C3HC4-ty 93.2 0.18 6.2E-06 35.8 5.5 38 65-102 24-63 (105)
77 3shq_A UBLCP1; phosphatase, hy 93.1 0.15 5.1E-06 41.7 5.6 40 63-103 3-42 (320)
78 2daf_A FLJ35834 protein; hypot 93.0 0.15 5.2E-06 37.3 5.0 36 65-100 15-51 (118)
79 1v6e_A Cytoskeleton-associated 92.5 0.25 8.6E-06 32.9 5.2 36 66-101 8-44 (95)
80 1se9_A Ubiquitin family; ubiqu 92.3 0.29 1E-05 35.7 5.8 38 61-98 12-50 (126)
81 2kjr_A CG11242; UBL, ubiquitin 91.9 0.4 1.4E-05 32.7 5.7 36 65-100 15-52 (95)
82 1t0y_A Tubulin folding cofacto 91.6 0.39 1.3E-05 33.7 5.6 37 65-101 6-43 (122)
83 1oqy_A HHR23A, UV excision rep 91.5 0.13 4.4E-06 43.2 3.4 36 64-99 6-41 (368)
84 2d9p_A Polyadenylate-binding p 90.4 1.7 5.7E-05 28.0 7.4 57 41-98 19-75 (103)
85 2fnj_B Transcription elongatio 90.3 0.6 2E-05 33.7 5.6 35 65-100 2-36 (118)
86 3a4r_A Nfatc2-interacting prot 90.2 1.4 4.9E-05 28.6 7.0 40 62-101 4-44 (79)
87 2d07_B Ubiquitin-like protein 89.8 1.7 5.7E-05 29.3 7.2 40 61-100 13-52 (93)
88 2xzm_9 RPS31E; ribosome, trans 89.7 0.062 2.1E-06 41.8 0.0 35 66-100 1-35 (189)
89 2dgv_A HnRNP M, heterogeneous 89.3 2.4 8.3E-05 26.4 7.4 57 41-98 12-68 (92)
90 3bs9_A Nucleolysin TIA-1 isofo 89.0 2.7 9.2E-05 25.8 7.3 56 42-98 11-68 (87)
91 2io1_B Small ubiquitin-related 88.8 0.9 3.1E-05 30.8 5.4 39 62-100 4-42 (94)
92 1wm3_A Ubiquitin-like protein 88.5 1.4 4.9E-05 27.9 5.9 35 66-100 2-36 (72)
93 2pjh_A Protein NPL4, nuclear p 87.9 0.28 9.6E-06 32.5 2.2 37 64-101 3-39 (80)
94 2dgo_A Cytotoxic granule-assoc 87.9 3 0.0001 27.3 7.3 56 41-97 19-76 (115)
95 2k8h_A Small ubiquitin protein 87.8 1.8 6.3E-05 30.5 6.6 40 61-100 22-61 (110)
96 2dhg_A TRNA selenocysteine ass 87.4 3.4 0.00012 26.4 7.3 57 41-97 13-70 (104)
97 2io0_B Small ubiquitin-related 87.2 1.3 4.5E-05 30.0 5.4 38 63-100 3-40 (91)
98 2kj6_A Tubulin folding cofacto 86.5 1.2 4.2E-05 30.4 4.9 36 65-100 14-51 (97)
99 2cpz_A CUG triplet repeat RNA- 86.4 3.5 0.00012 27.0 7.1 57 41-98 29-87 (115)
100 2cq0_A Eukaryotic translation 84.5 4.2 0.00014 26.0 6.6 56 41-97 19-76 (103)
101 4f25_A Polyadenylate-binding p 84.5 4.2 0.00014 27.0 6.8 57 41-98 9-65 (115)
102 2dnh_A Bruno-like 5, RNA bindi 84.3 5.5 0.00019 25.4 7.1 56 41-97 19-75 (105)
103 2cq3_A RNA-binding protein 9; 84.2 4.4 0.00015 25.9 6.6 57 41-98 19-75 (103)
104 2fc8_A NCL protein; structure 83.6 5 0.00017 25.5 6.6 56 41-98 19-74 (102)
105 2cpf_A RNA binding motif prote 83.5 4.3 0.00015 25.6 6.2 56 41-97 9-69 (98)
106 1x4c_A Splicing factor, argini 83.3 3.7 0.00013 26.8 6.1 51 41-97 19-69 (108)
107 3ulh_A THO complex subunit 4; 83.3 6.6 0.00023 25.1 7.2 57 41-98 33-90 (107)
108 4fxv_A ELAV-like protein 1; RN 83.1 6.6 0.00023 25.6 7.2 57 41-98 23-81 (99)
109 3au4_A Myosin-X; protein-prote 83.0 3.3 0.00011 35.2 7.0 54 47-103 201-254 (555)
110 2al3_A TUG long isoform; TUG U 82.9 1 3.4E-05 31.5 3.2 39 59-97 3-42 (90)
111 2bps_A YUKD protein; ubiquitin 82.9 2.1 7.2E-05 29.0 4.7 44 62-105 1-46 (81)
112 2eke_C Ubiquitin-like protein 81.9 4.6 0.00016 28.3 6.4 40 60-100 26-65 (106)
113 4b6w_A Tubulin-specific chaper 81.8 1.5 5.2E-05 29.2 3.6 36 66-101 3-40 (86)
114 2do0_A HnRNP M, heterogeneous 81.7 7.9 0.00027 25.0 7.2 57 41-98 19-76 (114)
115 1wz0_A Ubiquitin-like protein 81.6 4.1 0.00014 28.2 5.9 41 61-101 20-60 (104)
116 4ajy_B Transcription elongatio 80.2 3.9 0.00013 29.6 5.6 35 66-101 3-37 (118)
117 1x4e_A RNA binding motif, sing 79.7 6.2 0.00021 24.2 5.8 55 42-97 10-66 (85)
118 1p1t_A Cleavage stimulation fa 79.6 7.8 0.00027 24.6 6.5 56 41-97 12-69 (104)
119 3pvl_A Myosin VIIA isoform 1; 79.5 4 0.00014 36.3 6.5 54 47-103 248-301 (655)
120 2kc2_A Talin-1, F1; FERM, adhe 79.3 3.6 0.00012 30.1 5.3 36 67-102 13-48 (128)
121 2do4_A Squamous cell carcinoma 78.7 10 0.00034 24.0 7.6 57 41-98 21-78 (100)
122 2cph_A RNA binding motif prote 78.5 5.4 0.00018 25.5 5.4 57 41-98 19-78 (107)
123 3p5t_L Cleavage and polyadenyl 78.3 10 0.00034 23.8 6.8 57 41-98 5-65 (90)
124 1whw_A Hypothetical protein ri 77.6 6.3 0.00021 24.9 5.5 56 41-97 12-69 (99)
125 2dnz_A Probable RNA-binding pr 77.5 10 0.00036 23.5 7.0 57 41-98 9-67 (95)
126 1q1o_A Cell division control p 77.4 5.8 0.0002 28.0 5.7 39 64-102 4-49 (98)
127 3ucg_A Polyadenylate-binding p 77.4 7.5 0.00026 23.9 5.7 54 41-95 10-65 (89)
128 2div_A TRNA selenocysteine ass 77.2 11 0.00038 23.7 7.3 56 41-97 13-71 (99)
129 1fxl_A Paraneoplastic encephal 76.7 14 0.00046 24.5 7.2 57 41-98 6-64 (167)
130 2x1f_A MRNA 3'-END-processing 76.5 7.5 0.00026 24.5 5.7 57 41-98 6-64 (96)
131 1x5s_A Cold-inducible RNA-bind 76.4 12 0.0004 23.7 6.6 57 41-98 16-74 (102)
132 1oey_A P67-PHOX, neutrophil cy 76.4 7.7 0.00026 26.5 5.9 35 65-101 5-39 (83)
133 1l3k_A Heterogeneous nuclear r 76.3 11 0.00038 25.9 6.9 56 41-97 108-165 (196)
134 1h2v_Z 20 kDa nuclear CAP bind 76.3 13 0.00046 25.5 7.3 56 41-97 43-100 (156)
135 1b7f_A Protein (SXL-lethal pro 75.7 15 0.00052 24.5 7.9 59 42-101 94-154 (168)
136 3qij_A Protein 4.1; cytoskelet 75.5 4 0.00014 32.1 4.9 42 62-103 14-55 (296)
137 3ex7_B RNA-binding protein 8A; 75.2 8 0.00027 25.5 5.7 57 41-98 26-84 (126)
138 3nmr_A Cugbp ELAV-like family 74.8 16 0.00055 24.4 7.3 57 42-99 100-157 (175)
139 2la6_A RNA-binding protein FUS 74.8 13 0.00046 23.4 7.0 56 42-98 18-83 (99)
140 3beg_B Splicing factor, argini 74.4 5.4 0.00018 26.6 4.7 52 41-98 20-71 (115)
141 2cqd_A RNA-binding region cont 74.4 6.8 0.00023 25.6 5.2 56 41-97 21-78 (116)
142 3md1_A Nuclear and cytoplasmic 74.0 12 0.00041 22.6 7.2 56 42-98 6-63 (83)
143 1h4r_A Merlin; FERM, neurofibr 74.0 6.5 0.00022 30.6 5.8 42 61-103 18-59 (314)
144 2fy1_A RNA-binding motif prote 73.8 12 0.00042 24.8 6.4 56 41-97 11-67 (116)
145 2cqi_A Nucleolysin TIAR; RNA r 73.7 13 0.00044 23.6 6.3 57 41-98 19-75 (103)
146 2dnp_A RNA-binding protein 14; 73.1 7.9 0.00027 24.1 5.0 51 41-98 13-63 (90)
147 2ns5_A Partitioning-defective 72.7 13 0.00043 25.7 6.3 40 64-104 1-42 (85)
148 1l3k_A Heterogeneous nuclear r 72.2 18 0.00061 24.8 7.2 56 41-97 17-74 (196)
149 1fxl_A Paraneoplastic encephal 71.2 19 0.00066 23.7 8.1 59 41-100 92-152 (167)
150 1x5u_A Splicing factor 3B subu 71.2 8.9 0.0003 24.4 5.0 56 41-97 19-76 (105)
151 3lqv_A PRE-mRNA branch site pr 71.2 13 0.00045 24.0 6.0 55 41-98 12-67 (115)
152 1x4h_A RNA-binding protein 28; 71.2 12 0.0004 24.0 5.6 57 41-98 19-77 (111)
153 2g4b_A Splicing factor U2AF 65 70.8 13 0.00045 25.0 6.1 55 42-97 99-155 (172)
154 2mss_A Protein (musashi1); RNA 70.4 6.4 0.00022 23.6 4.0 54 42-96 4-59 (75)
155 2err_A Ataxin-2-binding protei 70.3 6.8 0.00023 25.7 4.4 55 42-97 34-88 (109)
156 2e5g_A U6 snRNA-specific termi 70.0 14 0.00047 23.2 5.7 52 41-96 12-63 (94)
157 1x4a_A Splicing factor, argini 69.9 13 0.00046 23.9 5.7 56 41-98 26-81 (109)
158 2kxn_B Transformer-2 protein h 69.6 21 0.00073 24.3 7.0 57 41-98 50-108 (129)
159 4f02_A Polyadenylate-binding p 69.1 18 0.0006 26.1 6.8 57 41-98 107-163 (213)
160 2zpm_A Regulator of sigma E pr 68.9 8.6 0.00029 24.2 4.5 33 50-83 38-70 (91)
161 3mdf_A Peptidyl-prolyl CIS-tra 68.7 14 0.00046 22.4 5.3 57 41-98 11-69 (85)
162 1rk8_A CG8781-PA, CG8781-PA pr 68.4 25 0.00084 24.6 7.3 57 41-98 76-134 (165)
163 1wez_A HnRNP H', FTP-3, hetero 68.4 9.2 0.00031 25.1 4.7 54 41-96 19-73 (102)
164 2dh8_A DAZ-associated protein 68.2 20 0.00069 22.7 6.7 56 41-97 20-77 (105)
165 2jwn_A Embryonic polyadenylate 68.1 13 0.00045 24.4 5.5 54 41-95 40-95 (124)
166 2ek1_A RNA-binding protein 12; 68.0 19 0.00064 22.3 6.0 56 41-97 19-76 (95)
167 2hvz_A Splicing factor, argini 67.4 20 0.0007 22.5 6.5 53 42-98 5-57 (101)
168 3khf_A Microtubule-associated 67.2 8.2 0.00028 24.7 4.2 42 38-80 55-99 (99)
169 3md3_A Nuclear and cytoplasmic 67.0 14 0.00049 24.4 5.5 56 42-98 5-61 (166)
170 1ef1_A Moesin; membrane, FERM 66.9 8.2 0.00028 29.6 4.8 38 65-103 1-38 (294)
171 2dgu_A Heterogeneous nuclear r 66.5 13 0.00043 23.8 5.0 51 41-98 15-65 (103)
172 2cqc_A Arginine/serine-rich sp 66.0 21 0.0007 22.0 7.1 57 41-98 19-77 (95)
173 2ku7_A MLL1 PHD3-CYP33 RRM chi 65.9 16 0.00054 24.2 5.6 55 42-97 68-124 (140)
174 2kn4_A Immunoglobulin G-bindin 65.9 13 0.00044 25.4 5.2 55 42-97 75-131 (158)
175 1x5t_A Splicing factor 3B subu 65.9 10 0.00034 23.7 4.3 56 41-97 9-67 (96)
176 2dgs_A DAZ-associated protein 65.8 18 0.00061 22.8 5.6 55 41-96 14-70 (99)
177 2dgt_A RNA-binding protein 30; 65.8 17 0.00058 22.6 5.5 51 41-98 14-64 (92)
178 1uaw_A Mouse-musashi-1; RNP-ty 65.2 11 0.00036 22.5 4.2 56 41-97 4-61 (77)
179 2dgw_A Probable RNA-binding pr 65.0 22 0.00075 22.0 6.5 54 41-96 14-68 (91)
180 2dnm_A SRP46 splicing factor; 64.6 7.4 0.00025 24.8 3.6 54 41-97 17-74 (103)
181 2cqp_A RNA-binding protein 12; 64.4 23 0.00077 22.1 5.9 56 41-97 19-76 (98)
182 2dgp_A Bruno-like 4, RNA bindi 63.9 13 0.00046 23.6 4.8 58 41-99 17-76 (106)
183 2lxi_A RNA-binding protein 10; 63.5 4.8 0.00016 25.8 2.5 57 41-98 5-64 (91)
184 1wi8_A EIF-4B, eukaryotic tran 63.4 12 0.0004 23.9 4.4 53 41-95 19-74 (104)
185 3ivf_A Talin-1; FERM domain, c 62.6 14 0.00049 29.5 5.6 53 50-102 67-122 (371)
186 2dgx_A KIAA0430 protein; RRM d 62.6 17 0.00057 23.1 5.0 55 41-98 13-72 (96)
187 2ywk_A Putative RNA-binding pr 62.3 25 0.00085 21.7 6.7 57 41-98 20-77 (95)
188 1whx_A Hypothetical protein ri 62.1 26 0.00088 23.0 6.1 68 41-115 14-81 (111)
189 2jrs_A RNA-binding protein 39; 61.4 31 0.0011 22.5 7.2 57 41-98 30-88 (108)
190 2r2q_A Gamma-aminobutyric acid 61.2 16 0.00056 25.4 5.1 46 57-102 19-70 (110)
191 4a8x_A RNA-binding protein wit 61.2 20 0.00069 21.7 5.1 56 41-97 8-66 (88)
192 2khc_A Testis-specific RNP-typ 61.1 14 0.00047 24.1 4.5 56 41-97 44-101 (118)
193 3r27_A HnRNP L, heterogeneous 60.9 35 0.0012 23.1 6.7 54 41-99 25-78 (100)
194 2cpe_A RNA-binding protein EWS 60.9 15 0.00051 23.7 4.6 57 41-98 19-85 (113)
195 2rs2_A Musashi-1, RNA-binding 60.9 17 0.00059 23.8 5.0 56 41-97 29-86 (109)
196 2cqg_A TDP-43, TAR DNA-binding 60.8 29 0.00098 21.9 7.1 56 41-97 19-76 (103)
197 2cqb_A Peptidyl-prolyl CIS-tra 60.8 18 0.00063 22.7 5.0 57 41-98 16-74 (102)
198 1oo0_B CG8781-PA, drosophila Y 60.7 25 0.00087 22.4 5.7 57 41-98 30-88 (110)
199 1x4g_A Nucleolysin TIAR; struc 60.6 21 0.00071 23.0 5.3 53 41-98 29-81 (109)
200 2qfj_A FBP-interacting repress 60.4 40 0.0014 23.4 7.8 58 41-99 129-188 (216)
201 1u6f_A Tcubp1, RNA-binding pro 60.0 32 0.0011 22.9 6.3 56 41-97 46-103 (139)
202 2qfj_A FBP-interacting repress 59.9 26 0.00089 24.4 6.1 57 41-98 32-90 (216)
203 2yh0_A Splicing factor U2AF 65 59.7 25 0.00085 24.2 5.8 56 41-97 118-175 (198)
204 2fc9_A NCL protein; structure 59.6 20 0.00067 22.6 5.0 53 41-97 19-72 (101)
205 1x5o_A RNA binding motif, sing 58.8 33 0.0011 22.0 6.8 56 41-97 29-85 (114)
206 2v1y_A Phosphatidylinositol-4, 58.6 23 0.0008 25.2 5.6 38 62-99 16-53 (108)
207 2krb_A Eukaryotic translation 58.3 16 0.00056 22.2 4.2 54 42-96 6-65 (81)
208 1wgy_A RAP guanine nucleotide 58.2 9.9 0.00034 27.0 3.6 36 66-101 10-45 (104)
209 3kyd_D Small ubiquitin-related 58.0 23 0.00078 25.2 5.5 60 38-100 16-75 (115)
210 2e44_A Insulin-like growth fac 58.0 31 0.0011 21.4 5.7 55 41-98 19-74 (96)
211 1p9y_A Trigger factor, TF; alp 57.9 7.8 0.00027 27.1 3.0 38 63-102 1-38 (121)
212 2cpd_A Apobec-1 stimulating pr 57.8 32 0.0011 21.6 6.0 51 41-98 19-71 (99)
213 2i6v_A General secretion pathw 56.6 23 0.0008 22.3 4.9 32 50-82 53-85 (87)
214 3pge_A SUMO-modified prolifera 56.4 19 0.00064 27.9 5.2 39 61-100 25-63 (200)
215 1why_A Hypothetical protein ri 55.5 35 0.0012 21.3 6.4 53 41-98 21-73 (97)
216 3s7r_A Heterogeneous nuclear r 55.4 32 0.0011 20.9 6.5 56 41-97 15-72 (87)
217 2cjk_A Nuclear polyadenylated 55.2 18 0.00063 24.1 4.4 56 41-97 7-64 (167)
218 3n9u_C Cleavage and polyadenyl 54.9 53 0.0018 23.2 7.2 56 41-97 59-118 (156)
219 2dha_A FLJ20171 protein; RRM d 54.8 38 0.0013 23.3 6.1 55 41-97 27-87 (123)
220 2zjd_A Microtubule-associated 54.7 20 0.00067 26.1 4.8 47 56-102 26-79 (130)
221 2dhz_A RAP guanine nucleotide 54.6 15 0.0005 26.8 4.0 36 66-101 10-45 (120)
222 1x4b_A Heterogeneous nuclear r 54.4 34 0.0011 22.1 5.5 56 41-97 31-88 (116)
223 3s8s_A Histone-lysine N-methyl 54.2 44 0.0015 22.1 7.2 56 41-97 10-67 (110)
224 1iqt_A AUF1, heterogeneous nuc 54.1 10 0.00035 22.5 2.7 56 41-97 3-60 (75)
225 3nmr_A Cugbp ELAV-like family 53.9 46 0.0016 22.1 6.9 56 42-98 8-67 (175)
226 2lkz_A RNA-binding protein 5; 53.8 13 0.00045 24.4 3.4 57 41-98 13-73 (95)
227 3q2s_C Cleavage and polyadenyl 53.6 26 0.00091 26.3 5.5 56 41-97 72-131 (229)
228 2kt5_A RNA and export factor-b 53.5 44 0.0015 21.9 6.3 73 41-116 39-112 (124)
229 2cu1_A Mitogen-activated prote 53.4 19 0.00063 25.9 4.3 47 45-97 24-70 (103)
230 2db1_A Heterogeneous nuclear r 53.2 35 0.0012 22.6 5.6 54 41-96 21-79 (118)
231 3jyu_A Ubiquitin carboxyl-term 53.1 18 0.00063 27.7 4.6 38 65-102 139-178 (231)
232 2kl1_A YLBL protein; structure 52.9 23 0.0008 22.8 4.5 43 38-82 25-70 (94)
233 1b7f_A Protein (SXL-lethal pro 52.3 29 0.001 23.0 5.1 56 41-97 7-64 (168)
234 2f3j_A RNA and export factor b 52.3 23 0.0008 25.5 4.9 76 41-119 92-168 (177)
235 3m95_A Autophagy related prote 51.7 21 0.00073 25.8 4.5 45 58-102 29-79 (125)
236 1s79_A Lupus LA protein; RRM, 51.6 48 0.0016 21.7 6.2 70 41-116 15-87 (103)
237 1vjk_A Molybdopterin convertin 51.5 26 0.00089 23.1 4.7 37 63-99 7-50 (98)
238 2l97_A HTRA, putative serine p 51.3 26 0.00088 24.1 4.8 33 50-83 90-123 (134)
239 2dng_A Eukaryotic translation 51.2 43 0.0015 21.1 6.1 53 41-95 19-73 (103)
240 2cpj_A Non-POU domain-containi 51.1 43 0.0015 21.0 5.9 53 41-98 19-71 (99)
241 2jrh_A Mitogen-activated prote 50.7 43 0.0015 23.7 5.8 47 45-97 20-66 (94)
242 3pgw_A U1-A; protein-RNA compl 50.5 54 0.0018 24.1 6.7 57 41-98 13-72 (282)
243 3md3_A Nuclear and cytoplasmic 50.3 51 0.0017 21.6 7.1 56 42-98 92-149 (166)
244 3sde_A Paraspeckle component 1 50.3 60 0.002 24.1 7.0 56 42-98 101-157 (261)
245 2i1j_A Moesin; FERM, coiled-co 50.0 29 0.00099 30.3 5.9 39 63-102 2-40 (575)
246 2cjk_A Nuclear polyadenylated 49.9 20 0.0007 23.9 4.0 54 42-96 92-147 (167)
247 2e5h_A Zinc finger CCHC-type a 49.9 37 0.0013 20.9 5.0 56 41-97 20-77 (94)
248 4a3p_A Ubiquitin carboxyl-term 49.8 23 0.00079 26.9 4.7 38 65-102 127-166 (217)
249 2hgl_A HNRPF protein, heteroge 49.7 46 0.0016 23.3 6.0 54 41-96 48-106 (136)
250 2i4s_A General secretion pathw 49.5 23 0.00078 23.2 4.1 32 50-82 71-103 (105)
251 3h9d_A ATG8, microtubule-assoc 49.1 28 0.00097 24.8 4.8 46 57-102 23-74 (119)
252 3h9d_A ATG8, microtubule-assoc 49.1 14 0.00049 26.4 3.2 43 45-94 54-100 (119)
253 2ytc_A PRE-mRNA-splicing facto 47.9 43 0.0015 20.1 6.0 53 41-98 16-68 (85)
254 2kjp_A Uncharacterized protein 47.7 15 0.00052 23.9 2.9 32 50-82 34-66 (91)
255 3pgw_S U1-70K; protein-RNA com 47.4 43 0.0015 27.8 6.3 56 41-97 106-163 (437)
256 3i18_A LMO2051 protein; alpha- 47.0 35 0.0012 22.0 4.7 32 50-82 40-72 (100)
257 3tix_A Ubiquitin-like protein 46.8 32 0.0011 27.3 5.1 41 60-101 52-92 (207)
258 3coq_A Regulatory protein GAL4 46.7 8.2 0.00028 24.5 1.5 37 23-59 51-87 (89)
259 2cpx_A Hypothetical protein FL 46.5 33 0.0011 22.0 4.5 54 41-97 29-86 (115)
260 2l32_A Small archaeal modifier 46.5 23 0.00077 22.9 3.6 29 66-94 1-29 (74)
261 1wg5_A Heterogeneous nuclear r 46.5 32 0.0011 22.1 4.4 56 41-97 19-76 (104)
262 2cr5_A Reproduction 8; UBX dom 45.8 54 0.0019 22.2 5.7 47 43-98 10-56 (109)
263 1eo6_A GATE-16, golgi-associat 45.7 34 0.0012 24.1 4.7 46 57-102 20-71 (117)
264 2c60_A Human mitogen-activated 45.4 48 0.0016 24.0 5.5 47 45-97 47-93 (111)
265 2dzk_A UBX domain-containing p 45.3 52 0.0018 22.5 5.5 36 64-99 12-47 (109)
266 2dnq_A RNA-binding protein 4B; 45.3 51 0.0018 20.2 7.0 49 42-97 13-61 (90)
267 2cq1_A PTB-like protein L; RRM 45.0 58 0.002 21.4 5.6 53 41-98 19-71 (101)
268 4f02_A Polyadenylate-binding p 44.9 82 0.0028 22.5 7.3 57 41-98 19-77 (213)
269 1qbe_A Bacteriophage Q beta ca 44.3 6.2 0.00021 29.1 0.6 26 18-44 98-123 (132)
270 2vsp_A PDZ domain-containing p 44.2 24 0.00082 22.1 3.4 38 38-76 48-88 (91)
271 2dnl_A Cytoplasmic polyadenyla 42.7 43 0.0015 21.8 4.6 56 41-98 12-72 (114)
272 2i1s_A Hypothetical protein; m 42.5 20 0.0007 26.5 3.3 36 65-100 8-46 (188)
273 3j21_T 50S ribosomal protein L 42.5 30 0.001 23.6 3.8 27 75-101 23-49 (86)
274 1ujv_A Membrane associated gua 42.4 35 0.0012 22.0 4.1 38 38-75 51-92 (96)
275 2nlw_A Eukaryotic translation 42.3 27 0.00092 22.5 3.5 56 41-97 19-80 (105)
276 2npt_B Mitogen-activated prote 41.3 76 0.0026 22.6 5.9 47 45-97 36-82 (100)
277 2p3w_A Probable serine proteas 41.2 37 0.0013 22.2 4.1 42 38-83 56-99 (112)
278 1wgr_A Growth factor receptor- 41.0 53 0.0018 22.9 5.1 36 64-99 8-43 (100)
279 2voo_A Lupus LA protein; RNA-b 41.0 1E+02 0.0034 22.3 7.0 72 41-116 113-185 (193)
280 2cpi_A CCR4-NOT transcription 40.9 54 0.0018 21.2 4.9 56 41-98 19-83 (111)
281 1vq8_S 50S ribosomal protein L 40.9 24 0.00084 23.9 3.2 27 75-101 22-48 (85)
282 2j76_E EIF-4B, EIF4B, eukaryot 40.7 24 0.00082 22.5 3.0 53 41-95 23-78 (100)
283 2ghp_A U4/U6 snRNA-associated 40.5 59 0.002 24.0 5.6 55 41-96 45-99 (292)
284 2pzd_A Serine protease HTRA2; 39.9 46 0.0016 21.6 4.4 43 38-84 56-100 (113)
285 3po0_A Small archaeal modifier 39.9 26 0.00089 22.4 3.1 25 76-100 18-42 (89)
286 4dxa_B KREV interaction trappe 39.7 23 0.00078 27.8 3.3 27 66-92 6-34 (322)
287 1wj4_A KIAA0794 protein; UBX d 39.3 83 0.0028 22.0 6.0 36 63-98 41-76 (124)
288 1qau_A Neuronal nitric oxide s 39.3 42 0.0014 21.7 4.1 44 38-82 48-94 (112)
289 1vd2_A Protein kinase C, IOTA 39.2 89 0.003 21.2 6.6 49 63-115 4-52 (89)
290 2zjr_Q 50S ribosomal protein L 39.0 34 0.0011 23.6 3.7 23 78-100 25-47 (95)
291 2kmm_A Guanosine-3',5'-BIS(dip 39.0 40 0.0014 20.4 3.8 29 66-96 1-29 (73)
292 3r8s_T 50S ribosomal protein L 38.9 32 0.0011 23.6 3.6 27 75-101 27-53 (93)
293 1ueq_A Membrane associated gua 38.8 20 0.00068 24.1 2.5 48 38-85 66-117 (123)
294 4eut_A Serine/threonine-protei 38.5 1.4E+02 0.0047 23.2 9.5 73 25-102 275-348 (396)
295 1p27_B RNA-binding protein 8A; 38.4 72 0.0025 20.0 7.9 57 41-98 27-85 (106)
296 1fjc_A Nucleolin RBD2, protein 38.3 39 0.0013 20.9 3.7 53 41-97 20-72 (96)
297 1ip9_A BEM1 protein; ubiquitin 38.3 60 0.0021 22.4 4.9 36 64-100 11-46 (85)
298 3ns6_A Eukaryotic translation 38.3 26 0.0009 22.4 3.0 55 42-97 11-73 (100)
299 2lmi_A GRSF-1, G-rich sequence 38.3 22 0.00075 23.0 2.6 55 41-96 15-73 (107)
300 3tr3_A BOLA; cellular processe 38.0 58 0.002 21.7 4.7 35 49-84 5-39 (82)
301 2m2b_A RNA-binding protein 10; 38.0 33 0.0011 23.0 3.5 57 41-99 27-87 (131)
302 2k7r_A Primosomal protein DNAI 37.8 34 0.0012 23.2 3.6 32 26-57 18-53 (106)
303 3tve_T 50S ribosomal protein L 37.7 41 0.0014 23.0 4.0 26 76-101 22-47 (92)
304 2jvr_A Nucleolar protein 3; RN 37.6 72 0.0025 21.4 5.3 55 41-98 32-87 (111)
305 1wel_A RNA-binding protein 12; 37.6 49 0.0017 21.8 4.3 55 41-96 29-85 (124)
306 3smz_A Protein raver-1, ribonu 37.0 1.2E+02 0.0042 22.2 7.3 56 42-98 100-157 (284)
307 3tyt_A Heterogeneous nuclear r 36.6 59 0.002 23.7 5.0 57 42-99 128-186 (205)
308 2dis_A Unnamed protein product 36.3 58 0.002 20.6 4.4 56 41-97 12-71 (109)
309 3id1_A Regulator of sigma E pr 36.1 79 0.0027 20.3 5.1 33 50-82 36-70 (95)
310 1n7e_A AMPA receptor interacti 35.6 59 0.002 20.5 4.3 37 38-75 52-91 (97)
311 1b8q_A Protein (neuronal nitri 35.6 39 0.0013 22.5 3.6 44 38-82 55-101 (127)
312 3j21_A 50S ribosomal protein L 35.5 1.5E+02 0.005 22.7 7.7 89 26-121 114-203 (216)
313 3qx1_A FAS-associated factor 1 35.2 87 0.003 19.9 5.6 34 64-97 6-39 (84)
314 2cq4_A RNA binding motif prote 35.1 51 0.0017 21.2 4.0 52 41-95 29-84 (114)
315 1y8t_A Hypothetical protein RV 34.9 62 0.0021 25.1 5.1 34 50-83 276-310 (324)
316 3cyy_A Tight junction protein 34.7 44 0.0015 20.6 3.5 43 38-82 45-90 (92)
317 2i2y_A Fusion protein consists 34.7 80 0.0027 21.3 5.1 53 42-98 78-130 (150)
318 2ad9_A Polypyrimidine tract-bi 34.5 1.1E+02 0.0038 21.0 6.6 53 41-98 35-87 (119)
319 3pgw_A U1-A; protein-RNA compl 34.1 1.2E+02 0.0041 22.2 6.4 54 41-98 211-264 (282)
320 2lea_A Serine/arginine-rich sp 33.9 29 0.00098 23.7 2.7 56 41-97 51-108 (135)
321 1nu4_A U1A RNA binding domain; 33.8 27 0.00093 21.6 2.4 56 41-97 12-70 (97)
322 3op6_A Uncharacterized protein 33.8 50 0.0017 23.1 4.1 45 44-88 22-66 (152)
323 2la4_A Nuclear and cytoplasmic 33.8 86 0.003 19.5 5.9 52 41-97 31-82 (101)
324 1x4d_A Matrin 3; structural ge 33.7 83 0.0028 20.9 5.0 52 42-98 20-72 (102)
325 4gmv_A RAS-associated and plec 33.6 84 0.0029 25.2 5.8 33 64-96 30-62 (281)
326 2cpy_A RNA-binding protein 12; 33.4 36 0.0012 22.2 3.1 56 41-97 19-76 (114)
327 3rui_B Autophagy-related prote 33.2 1.2E+02 0.0041 21.4 6.0 46 57-102 22-73 (118)
328 3goe_A DNA repair protein RAD6 33.0 1.2E+02 0.0041 20.9 6.0 38 62-99 6-43 (82)
329 1wf1_A RNA-binding protein RAL 32.8 96 0.0033 19.7 5.1 50 41-97 31-81 (110)
330 1v5q_A GRIP1 homolog, glutamat 32.6 42 0.0015 22.4 3.4 40 38-77 67-110 (122)
331 1v62_A KIAA1719 protein; struc 32.5 35 0.0012 22.7 2.9 42 38-80 64-108 (117)
332 3soe_A Membrane-associated gua 32.5 54 0.0018 22.8 4.0 38 38-75 53-94 (113)
333 3tca_A Amyloid beta A4 precurs 32.2 1.1E+02 0.0038 22.6 6.0 36 64-99 33-68 (291)
334 2z0x_A Putative uncharacterize 32.0 1.3E+02 0.0043 20.9 6.2 47 42-88 24-71 (158)
335 2dnn_A RNA-binding protein 12; 32.0 83 0.0028 21.0 4.8 54 41-96 20-74 (109)
336 3rle_A Golgi reassembly-stacki 31.9 41 0.0014 24.6 3.5 36 49-84 145-181 (209)
337 1fje_B Nucleolin RBD12, protei 31.8 1.1E+02 0.0037 20.5 5.4 54 41-98 103-156 (175)
338 2ylm_A Ubiquitin carboxyl-term 31.7 42 0.0015 28.9 4.0 50 60-112 334-385 (530)
339 2v90_A PDZ domain-containing p 31.5 69 0.0024 20.0 4.1 28 48-76 64-91 (96)
340 2hgn_A Heterogeneous nuclear r 30.9 37 0.0013 23.9 2.9 53 41-95 50-103 (139)
341 1s3s_G P47 protein; AAA ATPase 30.9 78 0.0027 22.2 4.7 43 57-99 43-86 (127)
342 1wdv_A Hypothetical protein AP 30.8 1.3E+02 0.0044 20.5 5.9 46 43-88 19-66 (152)
343 3smz_A Protein raver-1, ribonu 30.6 1.6E+02 0.0054 21.6 6.6 58 41-99 188-247 (284)
344 1sjq_A Polypyrimidine tract-bi 30.3 74 0.0025 21.6 4.3 53 41-98 20-72 (105)
345 1vjf_A DNA-binding protein, pu 30.3 1.5E+02 0.0053 21.3 6.6 60 29-88 19-79 (180)
346 1wfv_A Membrane associated gua 30.2 51 0.0017 20.8 3.3 38 38-76 58-98 (103)
347 3bpu_A Membrane-associated gua 30.2 56 0.0019 20.1 3.5 37 38-74 46-86 (88)
348 1v6b_A Harmonin isoform A1; st 29.8 46 0.0016 22.2 3.2 44 38-81 65-114 (118)
349 2d90_A PDZ domain containing p 29.1 53 0.0018 20.9 3.3 44 38-82 51-97 (102)
350 1kwa_A Hcask/LIN-2 protein; PD 29.0 51 0.0018 20.7 3.1 38 38-76 47-87 (88)
351 2vz5_A TAX1-binding protein 3; 28.9 69 0.0024 22.2 4.1 44 38-82 85-131 (139)
352 2h54_A Caspase-1; allosteric s 28.5 62 0.0021 24.1 3.9 24 77-100 78-101 (178)
353 1vki_A Hypothetical protein AT 28.4 1.7E+02 0.0058 21.2 6.8 61 28-88 23-84 (181)
354 2xs2_A Deleted in azoospermia- 28.2 71 0.0024 19.9 3.7 53 41-96 13-68 (102)
355 2raq_A Conserved protein MTH88 28.1 1.6E+02 0.0054 20.8 7.3 54 45-98 15-72 (97)
356 1wf0_A TDP-43, TAR DNA-binding 28.1 33 0.0011 21.0 2.1 42 41-84 9-50 (88)
357 1mms_A Protein (ribosomal prot 28.0 1.3E+02 0.0044 22.1 5.5 56 62-118 49-105 (140)
358 3qo6_A Protease DO-like 1, chl 27.2 70 0.0024 25.3 4.3 32 50-82 296-328 (348)
359 1wex_A Hypothetical protein (r 27.1 1.4E+02 0.0046 19.6 7.5 53 41-98 19-71 (104)
360 3sde_A Paraspeckle component 1 26.5 1.9E+02 0.0066 21.2 6.5 53 41-98 26-78 (261)
361 2hzc_A Splicing factor U2AF 65 26.4 87 0.003 18.7 3.8 51 41-95 10-70 (87)
362 1ryj_A Unknown; beta/alpha pro 26.3 75 0.0026 19.7 3.5 30 65-95 4-33 (70)
363 3qe1_A Sorting nexin-27, G pro 26.3 93 0.0032 19.8 4.1 38 38-76 64-104 (107)
364 2vwr_A Ligand of NUMB protein 26.2 73 0.0025 19.9 3.5 41 38-79 51-94 (95)
365 2qjl_A URM1, ubiquitin-related 25.8 87 0.003 20.5 3.9 25 75-99 19-45 (99)
366 2he4_A Na(+)/H(+) exchange reg 25.6 98 0.0034 19.0 4.0 37 38-75 49-88 (90)
367 1v5l_A PDZ and LIM domain 3; a 25.6 44 0.0015 21.5 2.4 40 38-78 50-92 (103)
368 1wfg_A Regulating synaptic mem 25.6 83 0.0028 21.4 3.9 40 38-77 87-130 (131)
369 2jvo_A Nucleolar protein 3; nu 25.5 1.4E+02 0.0048 19.3 6.4 50 42-98 36-85 (108)
370 4g6u_B EC869 CDII; beta-augmen 25.1 58 0.002 25.1 3.3 26 76-101 139-164 (177)
371 3hk0_A Growth factor receptor- 25.1 88 0.003 24.7 4.5 30 67-96 10-39 (256)
372 1te0_A Protease DEGS; two doma 25.0 1E+02 0.0035 23.8 4.8 32 50-82 278-310 (318)
373 3d2w_A TAR DNA-binding protein 24.8 58 0.002 20.4 2.8 43 41-85 15-57 (89)
374 2ki2_A SS-DNA binding protein 24.8 69 0.0024 19.4 3.1 51 42-96 6-60 (90)
375 2iwn_A Multiple PDZ domain pro 24.7 61 0.0021 20.0 2.9 39 38-77 55-96 (97)
376 2yub_A LIMK-2, LIM domain kina 24.5 68 0.0023 21.7 3.3 37 38-75 67-106 (118)
377 3chb_D Cholera toxin; toxin/re 24.1 82 0.0028 22.3 3.7 58 63-120 34-91 (104)
378 2jxx_A Nfatc2-interacting prot 24.1 1.7E+02 0.0059 19.8 5.9 41 59-99 19-60 (97)
379 3cf6_E RAP guanine nucleotide 23.9 1.4E+02 0.0048 26.3 6.0 42 59-100 346-387 (694)
380 3bpd_A Uncharacterized protein 23.9 1.2E+02 0.0041 21.5 4.5 54 45-98 15-72 (100)
381 2gkp_A Hypothetical protein NM 23.6 96 0.0033 23.5 4.2 22 80-101 144-165 (167)
382 2koj_A Partitioning defective 23.4 1.1E+02 0.0038 19.6 4.1 42 38-79 61-106 (111)
383 1kf6_B Fumarate reductase iron 23.2 1.2E+02 0.004 22.6 4.6 32 66-97 6-45 (243)
384 2hgm_A HNRPF protein, heteroge 23.1 72 0.0025 22.1 3.3 53 41-97 46-103 (126)
385 2fcf_A Multiple PDZ domain pro 23.1 1.1E+02 0.0038 19.2 4.0 39 38-77 61-102 (103)
386 4a17_R RPL23A, 60S ribosomal p 23.0 67 0.0023 24.2 3.2 27 74-100 86-112 (150)
387 2jil_A GRIP1 protein, glutamat 22.9 1E+02 0.0035 19.2 3.7 38 38-76 54-94 (97)
388 2oba_A Probable 6-pyruvoyl tet 22.5 1E+02 0.0036 22.0 4.1 37 26-63 76-114 (138)
389 3egv_B 50S ribosomal protein L 22.5 1E+02 0.0035 22.8 4.1 67 52-118 38-104 (146)
390 2bs2_B Quinol-fumarate reducta 22.4 1.7E+02 0.0057 21.7 5.4 35 64-98 3-46 (241)
391 2hga_A Conserved protein MTH13 22.3 66 0.0023 22.1 2.9 42 38-83 45-89 (125)
392 2y3a_A Phosphatidylinositol-4, 22.2 1.3E+02 0.0043 28.9 5.6 41 60-100 46-86 (1092)
393 2uzc_A Human pdlim5, PDZ and L 22.0 1.3E+02 0.0045 18.3 4.1 36 38-74 48-86 (88)
394 3egn_A RNA-binding protein 40; 21.9 84 0.0029 21.0 3.3 56 41-98 49-112 (143)
395 1obf_O Glyceraldehyde 3-phosph 21.8 1.2E+02 0.0042 24.9 4.9 35 65-99 231-267 (335)
396 3stj_A Protease DEGQ; serine p 21.7 1.2E+02 0.004 24.3 4.6 32 50-82 297-329 (345)
397 3h9e_O Glyceraldehyde-3-phosph 21.7 1.2E+02 0.0042 25.2 4.9 36 65-100 234-271 (346)
398 3hvz_A Uncharacterized protein 21.4 1.5E+02 0.0051 19.2 4.4 31 67-99 7-37 (78)
399 2ftc_G L11MT, MRP-L11, 39S rib 21.0 1.7E+02 0.006 21.5 5.1 66 52-117 39-105 (145)
400 2b4r_O Glyceraldehyde-3-phosph 20.8 1.1E+02 0.0036 25.5 4.3 35 65-99 241-277 (345)
401 1ufx_A KIAA1526 protein; PDZ d 20.8 1E+02 0.0035 20.0 3.5 41 36-76 51-99 (103)
402 2awx_A Synapse associated prot 20.7 1.2E+02 0.004 19.4 3.7 45 38-83 55-102 (105)
403 2a3j_A U1 small nuclear ribonu 20.6 2E+02 0.0068 19.6 5.1 54 42-97 34-91 (127)
404 2ej7_A HCG3 gene; HCG3 protein 20.5 65 0.0022 20.1 2.4 19 82-100 17-35 (82)
405 1pqs_A Cell division control p 20.2 63 0.0022 21.4 2.3 26 77-102 3-28 (77)
406 2x3d_A SSO6206; unknown functi 20.2 2.3E+02 0.008 19.9 6.1 53 46-98 14-71 (96)
407 2g82_O GAPDH, glyceraldehyde-3 20.1 45 0.0015 27.2 1.9 35 66-100 227-263 (331)
408 2a2l_A Unknown; structural gen 20.1 1.8E+02 0.006 20.8 4.9 44 59-102 28-71 (145)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.86 E-value=3.1e-22 Score=143.65 Aligned_cols=66 Identities=32% Similarity=0.431 Sum_probs=63.7
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccccccceeeecCC
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAPSIQSCSS 127 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~VW~~fcL~f~~ 127 (128)
.|+||+|+|.+++|++|+|.|+.++||+|||++|++++...+++++|+++|||+|+|++|||+|.|
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~G 69 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSS
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCC
Confidence 589999999999999999999999999999999999999888888999999999999999999987
No 2
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.81 E-value=4.2e-05 Score=49.02 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=35.0
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|..|+|+|.-.+|..+.|.|..++||.+||..|+..+..
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i 39 (85)
T 3mtn_B 1 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 39 (85)
T ss_dssp --CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 678999999999999999999999999999999998854
No 3
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.68 E-value=4.4e-05 Score=49.10 Aligned_cols=39 Identities=33% Similarity=0.409 Sum_probs=33.9
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|..|+|+|.-.+|.+++|.|..++||.+||.+|+..+..
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i 39 (85)
T 3n3k_B 1 GSHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGI 39 (85)
T ss_dssp ---CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 578999999999999999999999999999999998754
No 4
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.47 E-value=0.00027 Score=45.70 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=36.6
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.+..|+|+|.-.+|..|.|.|..++||.+||..|+..+..
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 48 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGI 48 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 4678999999999999999999999999999999998753
No 5
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0002 Score=48.45 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=34.9
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+..|+|+|.-.+|..|.|.|..+.||.+||+.|+..+..
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 58 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 58 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 356788999999999999999999999999999999998753
No 6
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.42 E-value=0.00024 Score=44.26 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.1
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..+.+.|+.++||.+||+.|+..+..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i 36 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 789999999999999999999999999999998743
No 7
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.40 E-value=0.00035 Score=46.28 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=37.8
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
-+.+..|+|+|.-.+|..|.|.|..+.||.+||..|+..+..
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 53 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGI 53 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCC
Confidence 355778999999999999999999999999999999998754
No 8
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=97.37 E-value=0.00027 Score=46.95 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=34.1
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+=|-|.|.|...+|..+.|.|+.++||.+||.+|+..+..
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gi 45 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGI 45 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCC
T ss_pred cccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCc
Confidence 3478999999999999999999999999999999998753
No 9
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00043 Score=43.99 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=33.9
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.-.+|..+.|.|..++||.+||+.|+..+.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~ 42 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN 42 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 4599999989999999999999999999999998874
No 10
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.33 E-value=0.00037 Score=43.42 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=33.1
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..+.+.|+.++||.+||..|+.....
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i 36 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGI 36 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCc
Confidence 789999999999999999999999999999998743
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.31 E-value=0.0006 Score=44.54 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=36.2
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
++....|+|+|.-.+|..+.+.|..+.||.+||..|+..+..
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 53 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 53 (88)
T ss_dssp ---CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred ecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 455678999999999999999999999999999999998754
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.24 E-value=0.00073 Score=43.18 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=34.9
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|.|+|.-.+|..+.+.|..++||.+||..|+.....
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 40 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 40 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCC
Confidence 46999999999999999999999999999999988753
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.22 E-value=0.00049 Score=45.51 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.7
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..|.|.|..++||.+||..|+..+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gi 37 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 37 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCC
Confidence 899999999999999999999999999999998754
No 14
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.19 E-value=0.00085 Score=44.65 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.7
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+-.-|+|+|..+.|..+.+.|..++||.+||..|+.....
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gi 46 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHI 46 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCc
Confidence 4567999999999999999999999999999999998753
No 15
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=97.18 E-value=0.00032 Score=48.83 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=36.5
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+...+|+|+|.-.+|..|.|.|..++||.+||..|+..+..
T Consensus 31 ~~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gi 71 (111)
T 3vdz_A 31 DELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 71 (111)
T ss_dssp GGGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 33457999999999999999999999999999999998754
No 16
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.11 E-value=0.00074 Score=44.79 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=33.2
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..|+|.|..++||.+||..|+..+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 36 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGI 36 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 789999999999999999999999999999988753
No 17
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.08 E-value=0.0014 Score=42.98 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=35.0
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-++|..|.|.|..+.||.+||+.|+..+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 41 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 41 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999999999999998753
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.08 E-value=0.00098 Score=43.19 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=34.0
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.-.+|..+.+.|..++||.+||+.|+....
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 42 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG 42 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC
Confidence 3699999999999999999999999999999998864
No 19
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.04 E-value=0.0013 Score=41.28 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=32.4
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+|+|+|.- +|..+.+.|+.++||.+||..|+..+..
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i 39 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGI 39 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 48899988 9999999999999999999999998753
No 20
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.03 E-value=0.00084 Score=44.99 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=32.7
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|+|+|.-.+|..+.|.|..++||.+||..|+..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g 35 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 35 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC
Confidence 78999999999999999999999999999999874
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.99 E-value=0.0015 Score=41.99 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
.|+|+|.-.+|..+.+.|..++||.+||..|+..+
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~ 39 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEK 39 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhc
Confidence 58999999999999999999999999999999984
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.94 E-value=0.0021 Score=42.45 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=34.2
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.-.+|..+.+.|..++||.+||..|+....
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g 39 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG 39 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999999999999999998864
No 23
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.89 E-value=0.0011 Score=44.14 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=32.9
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
..|+|+|.-.+|..+.|.|..+.||.+||+.|+...
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 469999999999999999999999999999998764
No 24
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.0021 Score=44.42 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.8
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-.+|..+.|.|..++||.+||++|+..+..
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 71 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 71 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 46999999999999999999999999999999998753
No 25
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.85 E-value=0.0016 Score=43.70 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=32.2
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
|+|+|.-.+|..|.|.|..++||.+||..|+..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999985
No 26
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.79 E-value=0.0029 Score=40.34 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-.+|..+.+.|..+.||.+||++|+.....
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi 39 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 39 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCC
Confidence 46999999999999999999999999999999998643
No 27
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.73 E-value=0.003 Score=41.08 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=33.3
Q ss_pred CeeEEEEEcCCC-ceeeE-EEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDG-TSFDV-AVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dg-s~~~V-vV~~~ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.-.+| ..+.| .|..+.||.+||..|+....
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g 44 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD 44 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC
Confidence 469999999999 79999 59999999999999998864
No 28
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.72 E-value=0.0034 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=33.0
Q ss_pred eeEEEEEcCCCcee-eEE-EeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGTSF-DVA-VMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs~~-~Vv-V~~~ATV~dLKkAI~~~~~~ 101 (128)
.|+|+|.-.+|..+ .+. |..+.||.+||..|+.....
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gi 40 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHV 40 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCc
Confidence 58999999999885 998 99999999999999998743
No 29
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.69 E-value=0.0024 Score=44.52 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.3
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..+++.|..++||.+||++|+..+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 36 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 36 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 789999899999999999999999999999998754
No 30
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.59 E-value=0.0027 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=35.0
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
.-|..|+|+|.-.+|..+.+.|..+.||.+||..|+....
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g 58 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG 58 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 3567799999999999999999999999999999998764
No 31
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.52 E-value=0.0057 Score=40.61 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=32.9
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.-. |..+.+.|..+.||.+||+.|+....
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g 51 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH 51 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4599999988 99999999999999999999999874
No 32
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.47 E-value=0.0054 Score=41.47 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.9
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|. ..+..+.|.|+.++||.+||..|+..+..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgi 52 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGL 52 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 45899996 67899999999999999999999999864
No 33
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.43 E-value=0.0068 Score=42.81 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=35.3
Q ss_pred cCCe-eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSA-MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqA-m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.|.. |.|+|.-+.|.++.|.|..++||.+||+.|+.....
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gi 64 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGT 64 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 3444 999999999999999999999999999999999754
No 34
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=95.43 E-value=0.0005 Score=43.44 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=32.1
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|+|+|.-.+|..+.+.|..++||.+||..|+....
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 35 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG 35 (76)
Confidence 78899988999999999999999999999998764
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.36 E-value=0.0078 Score=40.61 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=35.9
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..+..|+|+|.-++|..+.+.|..+.||.+||.+|+.....
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gi 57 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 57 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999988743
No 36
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.33 E-value=0.0052 Score=40.79 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=30.9
Q ss_pred CeeEEEEEcCCCc--eeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs--~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
..|+|+|.-.++. .+.|.|..++||.+||+.|+..+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~ 43 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVY 43 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHh
Confidence 4699999999998 56666669999999999999986
No 37
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.28 E-value=0.0079 Score=39.78 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=34.4
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+..+....+.+.+|..+.|.|+.++||.+||+.|+.....
T Consensus 8 ~~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 47 (85)
T 2kd0_A 8 HSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNV 47 (85)
T ss_dssp CSCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCC
T ss_pred ccCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 3456667788899999999999999999999999998753
No 38
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0033 Score=43.28 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=32.4
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-++|..|.|.|..+.||.+||+.|+..+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 37 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISC 37 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 789999999999999999999999999999998753
No 39
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.21 E-value=0.011 Score=40.32 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=33.9
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
....|+|+|.-. |..+.|.|..+.||.+||..|+.....
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gi 60 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKS 60 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 346799999888 889999999999999999999998753
No 40
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.20 E-value=0.0082 Score=43.73 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=35.3
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+....|+|+|.-.+|..+.|.|..+.||.+||+.|+..+..
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 56 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 56 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 34567999999999999999999999999999999998753
No 41
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.11 E-value=0.013 Score=40.76 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.7
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
...|+|+|.-.+|..+.+.|..++||.+||+.|+....
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g 111 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 34588889889999999999999999999999998764
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.10 E-value=0.012 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=33.0
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-.+|. +.+.|..+.||.+||..|+.....
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gi 57 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKA 57 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCc
Confidence 5699999998886 799999999999999999998753
No 43
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.09 E-value=0.0081 Score=42.90 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=33.8
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+|+|+|.-++|..+++.|..++||.+||..|+..+..
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 38 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGV 38 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 4899999899999999999999999999999999854
No 44
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.08 E-value=0.013 Score=40.30 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=34.6
Q ss_pred cCCeeEEEEEcC---CCceeeEEEeC-CCcHHHHHHHHHHHHh
Q 033077 62 MGSAMRISILKL---DGTSFDVAVMN-SATVKDLKLAIKKKVN 100 (128)
Q Consensus 62 ~GqAm~l~V~k~---Dgs~~~VvV~~-~ATV~dLKkAI~~~~~ 100 (128)
+...|+|+|.-. +|..+.+.|.. ++||.+||..|+..+.
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g 66 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ 66 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC
Confidence 345799999988 88999999997 9999999999999874
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.04 E-value=0.014 Score=39.75 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.6
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-.++. +.|.|..+.||.+||+.|+..+..
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gi 52 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKA 52 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCc
Confidence 4599999988886 799999999999999999998753
No 46
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.02 E-value=0.014 Score=39.47 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
....|+|+|.-+.+ .+.|.|..+.||.+||..|+.....
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gi 50 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENT 50 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCc
Confidence 45679999999888 8999999999999999999998643
No 47
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0036 Score=42.97 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=31.6
Q ss_pred hhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 59 SLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 59 ale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
-++-|..|+|+|.- +|..|.|.|..+.||.+||+.|+..+..
T Consensus 22 ~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gi 63 (101)
T 3m63_B 22 YFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGI 63 (101)
T ss_dssp -------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSC
T ss_pred cccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 34556678888886 8999999999999999999999998753
No 48
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.015 Score=40.58 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=34.7
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQ 104 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~ 104 (128)
|.+.+.+..|..++|.|..++||.+||..|+..+.--+.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~ 47 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVS 47 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 778888999999999999999999999999999865433
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.96 E-value=0.013 Score=39.27 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=30.9
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
....|+|+|.- |..+.+.|..++||.+||..|+.....
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gi 53 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGI 53 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCc
Confidence 34569999987 899999999999999999999998753
No 50
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.92 E-value=0.013 Score=40.38 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=32.0
Q ss_pred CeeEEEEEcCCCceeeEEEe-CCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVM-NSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~-~~ATV~dLKkAI~~~~~ 100 (128)
..|.|+|.-.+|.. .|.|. .++||.|||..|+..+.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC
Confidence 45999999999966 78898 89999999999999885
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.87 E-value=0.011 Score=44.12 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=32.9
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|.|+|.-++|..+.+.|..+.||.+||+.|+....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g 35 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999999999999999875
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.84 E-value=0.019 Score=38.97 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=31.5
Q ss_pred eeEEEEEcCCC----ceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDG----TSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dg----s~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.|+|+|.-..+ ..|.|.|..++||.+||..|+..+..
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gi 47 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGV 47 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCc
Confidence 48898877533 79999999999999999999998754
No 53
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=95.83 E-value=0.015 Score=44.89 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+|.|+|.-++|.+++|.|..+.||.+||..|+.....
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gI 141 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 141 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCC
Confidence 4999999999999999999999999999999998743
No 54
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.82 E-value=0.019 Score=40.90 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
...|+|+|.-. |..|.|.|..+.||.+||..|+..+.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g 66 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK 66 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC
Confidence 35699999988 89999999999999999999999875
No 55
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.79 E-value=0.019 Score=40.92 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...|.|+|.-.+|..+++.|..+.||.+||..|+.....
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 117 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 117 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCC
Confidence 456888888889999999999999999999999988743
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.017 Score=40.29 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=35.0
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
-....|+|..++|..+.+.|..++||.+||..|+.....
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gi 45 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 45 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 345789999999999999999999999999999998753
No 57
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.74 E-value=0.019 Score=38.96 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=32.4
Q ss_pred CeeEEEEEcCCCcee-eEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~-~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|. ..|..+ +|.|..++||.+||..|+.....
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgi 43 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGV 43 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCC
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 46899997 578999 69999999999999999999854
No 58
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=95.69 E-value=0.0063 Score=40.13 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.1
Q ss_pred eEEEEEcCCCceeeEE-EeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVA-VMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~Vv-V~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|... |. |..++||.|||.+|+.....
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi 36 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGI 36 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCC
Confidence 7889998999654 77 88899999999999998753
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.68 E-value=0.0081 Score=40.02 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=32.3
Q ss_pred CeeEEEEEcCCCceeeE-EEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDV-AVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~V-vV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|. ..|..++| .|+.++||.+||..|+.....
T Consensus 6 ~~m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gi 43 (90)
T 1v5t_A 6 SGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGV 43 (90)
T ss_dssp CSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCC
T ss_pred ceEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 35889986 47899999 999999999999999999864
No 60
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=95.65 E-value=0.0019 Score=45.79 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=0.0
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|+|+|.-.+|..++|.|..++||.+||..|+..+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gi 36 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 36 (128)
T ss_dssp ------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 788999999999999999999999999999987643
No 61
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=95.62 E-value=0.019 Score=41.58 Aligned_cols=37 Identities=5% Similarity=0.202 Sum_probs=33.7
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
.+..|.|+|.-++|..+++.|..+.||++||..|+..
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 4566999999999999999999999999999999873
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.55 E-value=0.022 Score=39.43 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=31.4
Q ss_pred CeeEEEEEcCCCc--eeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs--~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
..|+|+|.-+++. .++|.|+.+.||.+||..|+..+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY 59 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 4699999999998 56888899999999999999875
No 63
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.39 E-value=0.028 Score=39.67 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=32.5
Q ss_pred CCeeEEEEEcCC----CceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 63 GSAMRISILKLD----GTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 63 GqAm~l~V~k~D----gs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|-| ||.|..-+ +..|+|.|..+.||.+||..|+..+..
T Consensus 14 g~a-ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gi 55 (100)
T 1wju_A 14 GIA-TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGL 55 (100)
T ss_dssp CEE-EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTC
T ss_pred ceE-EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCc
Confidence 444 78887777 789999999999999999999999853
No 64
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.38 E-value=0.032 Score=36.72 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=30.7
Q ss_pred CeeEEEEEcCCCceeeEEEeCC-----CcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNS-----ATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~-----ATV~dLKkAI~~~~~ 100 (128)
..|+|+|.- .+..+.|.|+.+ +||.+||+.|+....
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g 46 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG 46 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC
Confidence 358999976 588999999874 999999999999874
No 65
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.31 E-value=0.025 Score=38.02 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=29.6
Q ss_pred eEEEEEcCCCcee--eE-EEeCCCcHHHHHHHHHHHH
Q 033077 66 MRISILKLDGTSF--DV-AVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 66 m~l~V~k~Dgs~~--~V-vV~~~ATV~dLKkAI~~~~ 99 (128)
|.|+|.-+.|..+ .| .|..++||.+||+.|+...
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~ 47 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH 47 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh
Confidence 8999998887665 58 8999999999999999853
No 66
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.29 E-value=0.034 Score=39.91 Aligned_cols=35 Identities=6% Similarity=0.231 Sum_probs=32.5
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
..|.|+|.-+.|..+++.|..+.||++||..|+..
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 45999999999999999999999999999999984
No 67
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.86 E-value=0.048 Score=37.70 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCeeEEEEEcCCCceeeE--EEeCCCcHHHHHHHH-HHH
Q 033077 63 GSAMRISILKLDGTSFDV--AVMNSATVKDLKLAI-KKK 98 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~V--vV~~~ATV~dLKkAI-~~~ 98 (128)
...|+|+|.-+.|..|++ .|..+.||.+||..| +..
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~ 55 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE 55 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh
Confidence 467999999999998877 456999999999999 654
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.82 E-value=0.022 Score=39.11 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=30.8
Q ss_pred eeEEEEEcCCC---ceeeEEEeC---------CCcHHHHHHHHHHHH
Q 033077 65 AMRISILKLDG---TSFDVAVMN---------SATVKDLKLAIKKKV 99 (128)
Q Consensus 65 Am~l~V~k~Dg---s~~~VvV~~---------~ATV~dLKkAI~~~~ 99 (128)
.|+|+|.-.++ ..+.|.|+. +.||.+||+.|+...
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~ 58 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKL 58 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHh
Confidence 48899999999 899999665 599999999999876
No 69
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.77 E-value=0.067 Score=37.54 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=34.6
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...-|.|+|.-..|.++.|.|..+.||.+||+.|+.+...
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gi 57 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGT 57 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTC
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCC
Confidence 4556889999899999999999999999999999988754
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.56 E-value=0.069 Score=38.76 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=33.2
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..|+|+|.-.+|..+++.|..+.||.+||+.|+.....
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 132 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 132 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCC
Confidence 45777788889999999999999999999999998743
No 71
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=94.55 E-value=0.056 Score=37.37 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=31.4
Q ss_pred CeeEEEEEcC----------CCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKL----------DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~----------Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..++|.|.-- +|..+.+.|..+.||.+||..|+....
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g 70 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG 70 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC
Confidence 4788888763 578999999999999999999998764
No 72
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.037 Score=37.44 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=29.2
Q ss_pred eEEEEEcCCCceeeEEEe--CCCcHHHHHHHH-HHHH
Q 033077 66 MRISILKLDGTSFDVAVM--NSATVKDLKLAI-KKKV 99 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~--~~ATV~dLKkAI-~~~~ 99 (128)
|+|+|.-+.|.+|+|.|. .+.||.+||..| +...
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~ 38 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEK 38 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTS
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhc
Confidence 789999999988877755 999999999999 6554
No 73
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=94.36 E-value=0.067 Score=44.16 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=36.2
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
....|+|+|.-++|..+.|.|..+.||.+||+.|+.....
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GI 269 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 269 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 4578999999999999999999999999999999998753
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.12 E-value=0.0088 Score=44.51 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=0.0
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|.|+|.-++|..+.|.|..+.||.+||..|+..+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g 35 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35 (152)
T ss_dssp -----------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 67889889999999999999999999999998774
No 75
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.04 E-value=0.075 Score=35.57 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=32.7
Q ss_pred CeeEEEEEc---CCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILK---LDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k---~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..++|+|.. .++..+.+.++.+.||.+||.-|++.|..
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gi 48 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKV 48 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTC
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 347887754 68899999999999999999999999964
No 76
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=93.18 E-value=0.18 Score=35.76 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=31.6
Q ss_pred eeEEEEEcCCC--ceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 65 AMRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 65 Am~l~V~k~Dg--s~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|+++|.-..+ .++.+.|..++||.+||..|+..+..-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip 63 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP 63 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC
Confidence 46777777775 688889999999999999999998543
No 77
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=93.07 E-value=0.15 Score=41.74 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
...|+|+|. ..|..++|.|..++||.+||+.|+..+.--+
T Consensus 3 ~~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp 42 (320)
T 3shq_A 3 VKEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRP 42 (320)
T ss_dssp -CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 456888887 6899999999999999999999999886433
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.04 E-value=0.15 Score=37.32 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=32.5
Q ss_pred eeEEEEE-cCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISIL-KLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~-k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
.+++.|. .-++..+.|.+..++||+|||.+|...+.
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~ 51 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG 51 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC
Confidence 4788886 88899999999999999999999999884
No 79
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.51 E-value=0.25 Score=32.92 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=29.5
Q ss_pred eEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
++|.|..-..+ .+.+.|+.+.||.+||..|+..+..
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gi 44 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGS 44 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCS
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCC
Confidence 67777754443 6899999999999999999999853
No 80
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.34 E-value=0.29 Score=35.75 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=33.8
Q ss_pred hcCCeeEEEEEcCCCcee-eEEEeCCCcHHHHHHHHHHH
Q 033077 61 EMGSAMRISILKLDGTSF-DVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~-~VvV~~~ATV~dLKkAI~~~ 98 (128)
|-...|.|+|.-++|+.| ++.+..+.||.+||..|...
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~ 50 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISE 50 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHH
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhh
Confidence 345789999999999999 79999999999999999764
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=91.90 E-value=0.4 Score=32.67 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=29.1
Q ss_pred eeEEEEEcCCC--ceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~k~Dg--s~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
-++|.|.-..+ ..+++.|+.+.||.+||.-|+..+.
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G 52 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG 52 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC
Confidence 45666665444 3899999999999999999999985
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=91.64 E-value=0.39 Score=33.68 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=30.5
Q ss_pred eeEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.++|.|.-..++ .+.+.|+.+.||.+||..|+.++..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gi 43 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGT 43 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 478888765443 6899999999999999999999853
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.48 E-value=0.13 Score=43.25 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=33.1
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
..|+|+|.-++|..|.|.|..+.||.+||+.|+..+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~ 41 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEK 41 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHT
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHh
Confidence 359999999999999999999999999999999864
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.40 E-value=1.7 Score=27.96 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=45.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+..+.+-......=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFS-PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp EEECCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHh
Confidence 4668999999999998887 79999899998876666555555667888888998753
No 85
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=90.27 E-value=0.6 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=30.5
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
.|.|+|++.. +++.+.|..+.||.+||.-|+....
T Consensus 2 ~mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~eg 36 (118)
T 2fnj_B 2 DVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILK 36 (118)
T ss_dssp EEEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHC
T ss_pred cEEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhC
Confidence 5788888754 7799999999999999999999874
No 86
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.23 E-value=1.4 Score=28.63 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=34.9
Q ss_pred cCCeeEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 62 MGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.+..|+|.|.-.+|. .+.+-|.++.++..|+.|+......
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi 44 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGL 44 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCC
Confidence 457799999999996 8999999999999999999877643
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=89.79 E-value=1.7 Score=29.28 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
+.+..|+|.|.-.+|..+.+-|.++.++..|+.|+.....
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g 52 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG 52 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999987764
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=89.72 E-value=0.062 Score=41.77 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|.|+|.-++|.+|.+.|..+.||.+||..|+....
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG 35 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG 35 (189)
T ss_dssp -----------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC
Confidence 78899999999999999999999999999998753
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=89.34 E-value=2.4 Score=26.44 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=45.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+..|.+-......=.+..+-.+||+..
T Consensus 12 ~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l 68 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMM 68 (92)
T ss_dssp EECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998776 58998899998866665555556667888999998863
No 90
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=88.96 E-value=2.7 Score=25.85 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=43.8
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..||.++|-++|....+ .+|.-..+.+.+. .|.+-......=.+..+-.+||+..
T Consensus 11 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 568999999999999888 7899888888775 4555445555567888888998754
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=88.83 E-value=0.9 Score=30.82 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=34.1
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
.+..|+|.|.-.+|..+.+-|..+.++..|+.|++....
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g 42 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG 42 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC
Confidence 356799999999999999999999999999999988764
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=88.47 E-value=1.4 Score=27.90 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=31.8
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
|+|.|.-.+|..+.+-|..+.++..|+.|+.....
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g 36 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG 36 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 78999999999999999999999999999987654
No 93
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=87.88 E-value=0.28 Score=32.46 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.5
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.+|.|+|+--+| .+-|.|..++||.||+..|+..+..
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i 39 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGF 39 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCC
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCC
Confidence 468899988887 5667788999999999999999864
No 94
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=87.86 E-value=3 Score=27.28 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=43.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.|.+. .+.+--.....=.+..+-.+||+.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4568999999999999888 8899888888875 555544555555778888888875
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=87.78 E-value=1.8 Score=30.45 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=35.7
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..+..|+|.|.-.+|..+.+-|..+.++..|+.|+.....
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g 61 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG 61 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 3567899999999999999999999999999999988754
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.40 E-value=3.4 Score=26.40 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=43.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|....+-.+|.-..+.|.+. .|.+--.....=.+..+-++||+.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 356899999999999988866999888888765 444444455556788888889873
No 97
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=87.24 E-value=1.3 Score=29.96 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
+..|+|.|.-.||..+.+-|.++.++..|+.|+.....
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g 40 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG 40 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC
Confidence 67899999999999999999999999999999987653
No 98
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=86.52 E-value=1.2 Score=30.44 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred eeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
-++|.|.--. ...+++.|+.+.||.+||.-|+..+.
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G 51 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG 51 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC
Confidence 3566666433 34799999999999999999999985
No 99
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=86.43 E-value=3.5 Score=26.99 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=44.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.|.+. .+.+--.....=.+..+-.+||+..
T Consensus 29 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 4668999999999999888 7898777777765 4555555556667888999998753
No 100
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.49 E-value=4.2 Score=26.01 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=43.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.+.+. .+.+-......=.+..+-.+||+.
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4668999999999998776 6898888888765 455544555566788888999885
No 101
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=84.47 E-value=4.2 Score=27.03 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..+||.++|-++|..... .+|.-..+.|.+..+.+-......=.+..+-.+||+..
T Consensus 9 fV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHc
Confidence 4568999999999998876 68998888888877765445555667888889999763
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=84.29 E-value=5.5 Score=25.45 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=41.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+. +|.+-......=.+..+-.+||+.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3568999999999998887 7898888888765 343333444455778888888874
No 103
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.17 E-value=4.4 Score=25.92 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=41.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.|.+..+.+-......=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp EEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 4568999999999998876 68988888888765543333334446678888888743
No 104
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.60 E-value=5 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|..... .++ .+++...+..+.+--.....=.+..+-.+||+..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 19 FVKGLSEDTTEETLKESFD-GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74 (102)
T ss_dssp EEECCCTTCCHHHHHHTST-TCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCccCHHHHHHHhc-CCe-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4668999999999998887 443 3444444445555555555667888889998753
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.49 E-value=4.3 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=41.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCC-----ceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG-----TSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg-----s~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|....+ .+|.-..+.+.+... .+-......=.+..+-.+||+.
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 3568999999999998887 789888888876533 3333444455678888888874
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.32 E-value=3.7 Score=26.80 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+...||.++|.++|..... .+|.-..+.|.+. | |.. ..=++..+.++||+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-g--~af--V~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-G--TGV--VEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-T--EEE--EEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-C--EEE--EEECCHHHHHHHHHH
Confidence 4568999999999998877 7898888888876 2 333 344668888999975
No 107
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=83.25 E-value=6.6 Score=25.12 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=42.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+. .|.+-......=.+..+-++||+..
T Consensus 33 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3558999999999998887 7898777777754 4444445555567888999998854
No 108
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=83.09 E-value=6.6 Score=25.63 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=42.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|..... .+|.-..+.|.+. .|.+--.....=.+..+-.+||+..
T Consensus 23 fV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 5678999999999998876 6898888888764 3555444445557788888998763
No 109
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=82.96 E-value=3.3 Score=35.16 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 47 KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 47 ~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
..|+..||.+ +..|+.+.+.|.-+||+...|.|..++|+.||-..|.+++.+.+
T Consensus 201 ~~Ps~~Ei~a---~~~~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 201 FVPSRDEIEA---LIHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp SCCCHHHHHH---HHTTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred CCCCHHHHHH---HHhCCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 3457788765 55688999999999999999999999999999999999987753
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.94 E-value=1 Score=31.54 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.4
Q ss_pred hhhcCCeeEEEEEcCCCceeeEEEeCCCcHHH-HHHHHHH
Q 033077 59 SLEMGSAMRISILKLDGTSFDVAVMNSATVKD-LKLAIKK 97 (128)
Q Consensus 59 ale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~d-LKkAI~~ 97 (128)
|..-|.+|.|+|+.-++....|-|..+.|+.| |+.|.++
T Consensus 3 ~~~~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K 42 (90)
T 2al3_A 3 APAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRR 42 (90)
T ss_dssp -------CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHH
T ss_pred ccccCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 34568899999999999999999999999999 5666553
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=82.88 E-value=2.1 Score=29.03 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=36.0
Q ss_pred cCCeeEEEEE--cCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhh
Q 033077 62 MGSAMRISIL--KLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQS 105 (128)
Q Consensus 62 ~GqAm~l~V~--k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r 105 (128)
+|.-+.||+. .-.+..||+.||..-||++|.+++...++....+
T Consensus 1 ~~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~ 46 (81)
T 2bps_A 1 HGSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPP 46 (81)
T ss_dssp CCCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCC
T ss_pred CCcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCC
Confidence 3555666666 5688999999999999999999999999876543
No 112
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=81.90 E-value=4.6 Score=28.26 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=35.2
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
...+..|+|.|.- +|..+.+-|.++.++.-|+.|+.....
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g 65 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG 65 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC
Confidence 3467889999999 999999999999999999999887664
No 113
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=81.77 E-value=1.5 Score=29.15 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=28.0
Q ss_pred eEEEEE--cCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISIL--KLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~--k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
++|+|- -.+...+++.++.+.||.+||..|+..+.-
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gi 40 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFAT 40 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCC
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCC
Confidence 344443 345667899999999999999999988743
No 114
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.67 E-value=7.9 Score=25.02 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=42.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.|.+. ++.+--.....=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFS-MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 4568999999999998887 7898777777664 3444444445556788888998754
No 115
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.58 E-value=4.1 Score=28.22 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=36.1
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+.+..|+|.|.-.+|..+.+-|.++.++..|+.|+......
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi 60 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL 60 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999999999877643
No 116
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=80.17 E-value=3.9 Score=29.59 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.2
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|=|.|.|. .+++.+.|..+.||.+||+.|+.....
T Consensus 3 vFl~Ikr~-ktTI~ldve~sdTV~~lK~kI~~~~gi 37 (118)
T 4ajy_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKR 37 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred eEEEEecC-CEEEEEEcCCCChHHHHHHHHHHHHCC
Confidence 44555554 778889999999999999999998753
No 117
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.66 E-value=6.2 Score=24.19 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+..||.++|.++|..... .+|.-..+.+.+.. |.+-......=.+..+-.+||+.
T Consensus 10 v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp EESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 568999999999998877 78988888887653 33222333344567788888874
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.61 E-value=7.8 Score=24.57 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=42.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|....+ .+|.-..+.+.+. .|.+-......=.+..+-.+||+.
T Consensus 12 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3568999999999998887 6887666666654 565555566667788888899875
No 119
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=79.46 E-value=4 Score=36.30 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=47.3
Q ss_pred CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 47 KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 47 ~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
.-|+..|+.+.. .++.|.+.|.-+||+...|.|...+|+.||=..|.+++.+..
T Consensus 248 ~~Ps~~Ei~Ai~---~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 248 QPPSWLELQATK---SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp SCCCHHHHHHHH---HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred cCCCHHHHHHHH---cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 347888988654 578999999999999999999999999999999999987754
No 120
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=79.34 E-value=3.6 Score=30.10 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=33.1
Q ss_pred EEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 67 ~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|.|.-+||...++.|.-+.||.+|+..|.+.+...
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~ 48 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 48 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCC
Confidence 588889999999999999999999999999999654
No 121
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.66 E-value=10 Score=24.00 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=42.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+.. |.+-......=.+..+-++||+..
T Consensus 21 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICK-AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 4568999999999998887 68988788877654 443344444557788888888754
No 122
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.49 E-value=5.4 Score=25.47 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=43.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC---CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL---DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~---Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+. .+.+-......=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3568999999999998876 5898888888766 5554444555567788888998864
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=78.34 E-value=10 Score=23.78 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=41.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcC--CeeEEEEEc--CCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILK--LDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~G--qAm~l~V~k--~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..+||.++|-++|..... .+| .-..+.+.+ ..|.+--.....=.+..+-.+||+..
T Consensus 5 ~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 3568999999999998775 678 666666655 46666555555667888889999753
No 124
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.57 E-value=6.3 Score=24.88 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.+.+.. +.+-......=.+..+-.+||+.
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3568999999999998887 68887777777653 33323333344567788888864
No 125
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.48 E-value=10 Score=23.54 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=41.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+.. +.+-......=.+..+-.+||+..
T Consensus 9 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998886 68988888888763 333333334446788888888753
No 126
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=77.41 E-value=5.8 Score=27.99 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=33.2
Q ss_pred CeeEEEEEcCC-------CceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 64 SAMRISILKLD-------GTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 64 qAm~l~V~k~D-------gs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
++|++.|.-.+ +..+.+.|+.+.+..||...|.++|...
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 45888888553 4579999999999999999999999874
No 127
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=77.40 E-value=7.5 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=38.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|....+ .+|.-..+.+.+. .+.+-......=.+..+-++|+
T Consensus 10 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3568999999999999887 7898888888765 4443333333334556777777
No 128
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.17 E-value=11 Score=23.68 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=41.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCee-EEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAM-RISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm-~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-. .+.|.+. .+.+-......=.+..+-.+||+.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 4568999999999988775 588755 6666554 566555666677788899999863
No 129
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=76.70 E-value=14 Score=24.52 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=42.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|.++|....+ .+|.-..+.+.+. .|.+-......=++..+-++|++..
T Consensus 6 ~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc
Confidence 3568999999999998887 6898777888765 4554444445557888888888753
No 130
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=76.53 E-value=7.5 Score=24.52 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=41.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|....+ .+|.-..+.+.+.- |.+-......=.+..+-.+||+..
T Consensus 6 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 6 YLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998887 78988888887652 333333444456778888888753
No 131
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.40 E-value=12 Score=23.72 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=41.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+.. +.+-......=.+..+-.+||+..
T Consensus 16 ~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998876 67888888887753 333233444556788888888753
No 132
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.37 E-value=7.7 Score=26.48 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
.|+|.|.-- -++.|.||.++++.+|...|...+.+
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l 39 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLEL 39 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 488999877 58999999999999999999999865
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=76.34 E-value=11 Score=25.91 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=44.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.|.+. +|.+-......=.+..+-.+||+.
T Consensus 108 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 108 FVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 3568999999999999887 7898888888876 455555566666788888899874
No 134
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=76.28 E-value=13 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=41.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|.++|..... .+|.-..+.|.+.- +.+--.....=.+..+-++||+.
T Consensus 43 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 43 YVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3568999999999998875 78988888887653 44434444555678888899885
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=75.65 E-value=15 Score=24.48 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=44.7
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+.+||.++|.++|..... .+|.-..+.+.+. +|.+-......=.+..+-.+|++..=..
T Consensus 94 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 94 VTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp EESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 457999999999999886 6898878888776 4554445555667889999998865444
No 136
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=75.50 E-value=4 Score=32.11 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=36.5
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
..+.+.+.|.=+||+...+.|..++|+.||=..|.+++.+.+
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 456799999999999999999999999999999999998764
No 137
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=75.19 E-value=8 Score=25.54 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=40.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.|.+. .+.+-......=.+..+-.+||+..
T Consensus 26 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 84 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84 (126)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3567999999999998876 7898777877655 3433223333446778888888754
No 138
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=74.85 E-value=16 Score=24.44 Aligned_cols=57 Identities=28% Similarity=0.269 Sum_probs=43.1
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+..||.++|-++|..... .+|.-..+.+.+. +|.+-......=.+..+-++|++..=
T Consensus 100 v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMFS-SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 458999999999998886 7898888888775 44444455556678888888887643
No 139
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=74.79 E-value=13 Score=23.44 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=40.6
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeE--------EEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMR--------ISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~--------l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
...||.++|-++|....+ .+|.-.. +.+.+. .|.+--.....=.+..+-++||+..
T Consensus 18 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 18 VQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp EECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 467999999999998887 7887666 666654 4554444555556788888898743
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=74.44 E-value=5.4 Score=26.55 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=39.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|.++|..... .+|.-..+.|.+. -|.. ..=++..+.++||+..
T Consensus 20 ~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---g~af--V~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD---GTGV--VEFVRKEDMTYAVRKL 71 (115)
T ss_dssp EEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT---SEEE--EEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC---CEEE--EEECCHHHHHHHHHHh
Confidence 3567999999999998776 7898888888765 2333 3446688899999854
No 141
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.38 E-value=6.8 Score=25.59 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+.- +.+--.....=.+..+-++||+.
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 4568999999999999887 78988888887652 33322333344677788888764
No 142
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=74.02 E-value=12 Score=22.56 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
..+||.++|-++|..... .+|.-..+.+.+. .|.+-......=.+..+-++|++..
T Consensus 6 V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp EECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 568999999999998875 6898888888765 3444444444556788888888753
No 143
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=74.01 E-value=6.5 Score=30.61 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=35.9
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
..++.+.+.|.=+|| .+.|.|..++|+.||=..|-+++.+.+
T Consensus 18 ~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 18 KQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp ---CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 348999999999999 799999999999999999999987753
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=73.79 E-value=12 Score=24.84 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=41.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.+.+.. |.+-......=.+..+-++||+.
T Consensus 11 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 11 FIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEECCTTTCCHHHHHHHHH-TSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3568999999999998876 68988888887764 33333444555778888899874
No 145
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.70 E-value=13 Score=23.61 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=41.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+..+..-......=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cqi_A 19 YVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 75 (103)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHh
Confidence 4568999999999988774 68988888888865543333334446778888888743
No 146
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.14 E-value=7.9 Score=24.12 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.|. +..| .=.+..+-++||+..
T Consensus 13 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~----~afV--~f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFE-RRGRVIECDVVKD----YAFV--HMEKEADAKAAIAQL 63 (90)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCEEEEEECSS----CEEE--EESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-cCCCEEEEEEECC----EEEE--EECCHHHHHHHHHHh
Confidence 3568999999999998877 6899888888865 3333 345777888888753
No 147
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=72.65 E-value=13 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.3
Q ss_pred CeeEEEEEcCCCceeeEEE-eCCCcHHHH-HHHHHHHHhhhhh
Q 033077 64 SAMRISILKLDGTSFDVAV-MNSATVKDL-KLAIKKKVNDMEQ 104 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV-~~~ATV~dL-KkAI~~~~~~~~~ 104 (128)
++|+|+|+=. +..+-|-- ..+-||.+| |+|++|+.-..++
T Consensus 1 ~~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k 42 (85)
T 2ns5_A 1 SEFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAK 42 (85)
T ss_dssp CCEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCC
Confidence 4799999866 34433333 223599998 8899999987765
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=72.24 E-value=18 Score=24.84 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=41.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..+.. .+|.-..+.|.+. .|.+--.....=++..+-.+||+.
T Consensus 17 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 17 FIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 4668999999999998887 7898888888775 343433344444677888888865
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=71.23 E-value=19 Score=23.74 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=44.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
++.+||.++|.++|..... .+|.-..+.+.+. +|.+-.....+=.+..+-.+|++..=.
T Consensus 92 ~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 92 YVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 4567999999999998887 7898888888765 454444555566788888888886443
No 150
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.23 E-value=8.9 Score=24.41 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.+.+.. +.+--.....=.+..+-++||+.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 19 YVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 4568999999999988776 57888788877653 33322333344678888888875
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=71.22 E-value=13 Score=24.05 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=39.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|....+ .+|.-..+.+.+...+ .+..| .=.+..+-.+||+..
T Consensus 12 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~g~afV--~f~~~~~A~~A~~~l 67 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNTPETRGTAYV--VYEDIFDAKNAVDHL 67 (115)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEEEECSTTTTTCEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCcEEEE--EECCHHHHHHHHHHc
Confidence 3568999999999998876 7899888888764332 23333 345677888888754
No 152
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.18 E-value=12 Score=24.01 Aligned_cols=57 Identities=7% Similarity=0.102 Sum_probs=40.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.|.+.- +.+--.....=.+..+-.+||+..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 19 FIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 4668999999999998886 78887777777542 333333444556788888888764
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=70.80 E-value=13 Score=25.00 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+.+||.++|-++|..... .+|.-..+.+.+. +|.+-......=.+..+-.+|++.
T Consensus 99 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 99 IGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred EEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 557999999999999888 7898888888876 555444444455666677788874
No 154
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=70.41 E-value=6.4 Score=23.56 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
+.+||.++|-++|..... .+|.-..+.+.+. .|.+-......=.+..+-++|++
T Consensus 4 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 568999999999998876 5888778777765 34333333334455677777765
No 155
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.25 E-value=6.8 Score=25.71 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=39.7
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
..+||.++|-++|..... .+|.-..+.+.+..+.+-......=.+..+-++|++.
T Consensus 34 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 567999999999998776 7898888888776553323333344566777788874
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.01 E-value=14 Score=23.22 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|..... .+|.-..+...+..|. |..|-- ++..+..+||+
T Consensus 12 ~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~g~-~afV~f--~~~~~a~~ai~ 63 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFL-AFGPVASVVMDKDKGV-FAIVEM--GDVGAREAVLS 63 (94)
T ss_dssp EEECCCTTCCHHHHHHHGG-GTSCEEEEEECSSSCC-EEEEEE--SSHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEcCCCCc-EEEEEE--CCHHHHHHHHh
Confidence 3568999999999998887 7888777744455555 544443 45778888887
No 157
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.88 E-value=13 Score=23.86 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|.....- +|.-..+.|.+. +.+-......=.+..+-.+||+..
T Consensus 26 ~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 26 YVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp EEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHc
Confidence 35689999999999988764 888777877553 332222223346778888888754
No 158
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=69.55 E-value=21 Score=24.29 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+.- |.+--.....=.+..+-++||+..
T Consensus 50 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp CEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998886 68988888887652 333333344456778888898854
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=69.09 E-value=18 Score=26.13 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.|.+..+.+--.....=.+..+-.+||+..
T Consensus 107 ~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 107 FIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred eECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 4568999999999998876 78999999998877765445555667888999999863
No 160
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=68.94 E-value=8.6 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=27.2
Q ss_pred CHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEe
Q 033077 50 TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 50 T~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
+..++...|.-..|+.++|+|.| +|..+.+.|.
T Consensus 38 ~~~~~~~~l~~~~g~~v~l~v~R-~g~~~~~~v~ 70 (91)
T 2zpm_A 38 QWVTFVMLVRDNPGXSLALEIER-QGSPLSLTLI 70 (91)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEEE-TTEEEEEEEC
T ss_pred CHHHHHHHHhcCCCCeEEEEEEE-CCeEEEEEEE
Confidence 67889888887789999999999 6677777774
No 161
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=68.71 E-value=14 Score=22.42 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=40.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|....+ .+|.-..+.+.+. .+.+-......=.+..+-++|++..
T Consensus 11 ~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998776 6898777777553 3434334444556788888888743
No 162
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=68.44 E-value=25 Score=24.58 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=43.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.|.+. .|.+-......=.+..+-++||+..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 3568999999999998775 6898888888765 4544455555667888889998753
No 163
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.36 E-value=9.2 Score=25.06 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-+||..... .+| .+.+.|.+. +|.+--.....=++..+.++||+
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 19 HMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp EEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3568999999999988776 467 557777654 44443344445567888899995
No 164
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.22 E-value=20 Score=22.74 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+. .+.+--.....=.+..+-++||+.
T Consensus 20 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4668999999999998876 5898888888775 333333333333455677888876
No 165
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=68.13 E-value=13 Score=24.40 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=41.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|..... .+|.-..+.|.+. .|.+-......=.+..+-++||
T Consensus 40 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 4668999999999998877 7898777887764 5655555555567788888888
No 166
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=68.00 E-value=19 Score=22.31 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCee--EEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAM--RISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm--~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-. ++...+..+.+--.....=.+..+-++||+.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp EEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 3568999999999998775 466543 3334445555545555556778888999884
No 167
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=67.44 E-value=20 Score=22.54 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..||.++|-++|....+ .+|.-..+.+.+. ...+..| .=.+..+-.+||+..
T Consensus 5 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~afV--~f~~~~~a~~A~~~l 57 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFS-YYGPLRTVWIARN-PPGFAFV--EFEDPRDAEDAVRGL 57 (101)
T ss_dssp EECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-SSSEEEE--ECSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-CCCEEEE--EECCHHHHHHHHHHH
Confidence 568999999999998876 6888888888776 2333333 446778888888853
No 168
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=67.15 E-value=8.2 Score=24.72 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=31.7
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDV 80 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~V 80 (128)
.|-+++ +.| ...+.+++...|. ..|+.++|+|.|.+.+.+.|
T Consensus 55 GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~~~~v 99 (99)
T 3khf_A 55 GDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALENTETSV 99 (99)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCSSCEEC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCCccccC
Confidence 565554 333 3457899999888 88999999999988877653
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=66.99 E-value=14 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+.+||.++|.++|..... .+|.-..+.+.+.. +.+-......=.+..+-.+|++..
T Consensus 5 V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 61 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTL 61 (166)
T ss_dssp EEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHH
T ss_pred ECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHc
Confidence 467999999999999887 78987778887654 333334445567888888998654
No 170
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.95 E-value=8.2 Score=29.60 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=33.5
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhh
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDME 103 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~ 103 (128)
+|.+.|.-+|| ++.|.|..++|+.||=.+|.+.+.+.+
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 47888999999 688999999999999999999997754
No 171
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=66.46 E-value=13 Score=23.82 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.|. |-. ..=.+..+-++||+..
T Consensus 15 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~----~af--V~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFS-QFGKLERVKKLKD----YAF--IHFDERDGAVKAMEEM 65 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-HHSCEEEEEECSS----CEE--EEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC----EEE--EEeCCHHHHHHHHHHH
Confidence 3568999999999998776 5898888888764 332 3345778888888753
No 172
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.05 E-value=21 Score=22.04 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=41.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+.. +.+-......=.+..+-++||+..
T Consensus 19 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3568999999999988876 58988888887653 344344444557788888888754
No 173
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=65.92 E-value=16 Score=24.18 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+..||.++|.++|....+ .+|.-..+.|.+. .|.+-......=.+..+-++||+.
T Consensus 68 v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 567999999999998876 6888888887664 233333344445677888888864
No 174
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=65.88 E-value=13 Score=25.43 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=41.4
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+.+||.++|-++|.... -.+|.-..+.|.+. .|.+--.....=.+..+-.+||+.
T Consensus 75 v~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EESCCTTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999888 47898888888775 444444444455678888888875
No 175
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.85 E-value=10 Score=23.68 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEE-EEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRI-SILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l-~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+ .|.+. .+.+-......=.+..+-.+||+.
T Consensus 9 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 9 FIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3568999999999988776 57876666 66653 444434444455678888888874
No 176
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.78 E-value=18 Score=22.75 Aligned_cols=55 Identities=5% Similarity=0.175 Sum_probs=39.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|..... .+|.-..+.+.+.- +.+-......=.+..+-++||+
T Consensus 14 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 14 FVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp EEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 3568999999999988876 58888888887652 3333333344467888889986
No 177
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.78 E-value=17 Score=22.61 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=38.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.|. +..| .=.+..+-.+||+..
T Consensus 14 ~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~~----~afV--~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFE-EYGPVIECDIVKD----YAFV--HMERAEDAVEAIRGL 64 (92)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCCCEEEECSS----EEEE--EESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEECC----EEEE--EECCHHHHHHHHHHh
Confidence 3568999999999998876 5898888888866 3333 345677778888743
No 178
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.21 E-value=11 Score=22.49 Aligned_cols=56 Identities=5% Similarity=0.110 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.+.+.- |.+-......=.+..+-.+|++.
T Consensus 4 ~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp EEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 3568999999999988776 57877777777653 33333333444556677777764
No 179
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.99 E-value=22 Score=21.97 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|.....-- ....+.+.+. +|.+--.....=.+..+..+||+
T Consensus 14 ~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 14 KLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp EEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 356899999999999888743 5667777765 44444445555678888899987
No 180
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.56 E-value=7.4 Score=24.78 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=37.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--Cc--eeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GT--SFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs--~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|....+ .+|.-..+.+.+.. +. .+..|.- .+..+-.+||+.
T Consensus 17 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~A~~A~~~ 74 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRF--HDRRDAQDAEAA 74 (103)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEE--SSSSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEE--CCHHHHHHHHHH
Confidence 3568999999999998887 78988788877653 22 2333333 445566777774
No 181
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.38 E-value=23 Score=22.13 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCe--eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqA--m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.- ..+...+..|.+--.....=.+..+-.+||+.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp EEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3568999999999988765 45654 33444455555555555556778888889874
No 182
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=63.94 E-value=13 Score=23.59 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=41.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
++..||.++|-++|..... .+|.-..+.|.+. .|.+-......=.+..+-++||+..-
T Consensus 17 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp EEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3568999999999988776 5788778877764 23333344445567888888988543
No 183
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=63.48 E-value=4.8 Score=25.79 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcC-CeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMG-SAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~G-qAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+| .-..+.|.+. .|.+-......=++..+-.+||+..
T Consensus 5 ~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp EEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 4678999999999999886 577 4445555543 3444333444557788888998753
No 184
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.43 E-value=12 Score=23.94 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=37.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC---CceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D---gs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|....+ .+| -..+.|.+.. |.+--.....=.+..+.++||
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp EEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3568999999999998887 568 7777777654 322222333446778888888
No 185
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=62.56 E-value=14 Score=29.50 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=42.6
Q ss_pred CHHH--HHHhhhhhcC-CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 50 TLSD--VDTLISLEMG-SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 50 T~~E--v~s~Iale~G-qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
|++. +.+-.+++++ +.+.+.|.-+||+...|.|..++|+.||=..|.+++.+.
T Consensus 67 ~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~ 122 (371)
T 3ivf_A 67 ALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 122 (371)
T ss_dssp BGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS
T ss_pred CHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 5554 3344566665 568888999999999999999999999999999988665
No 186
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.55 E-value=17 Score=23.06 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=38.1
Q ss_pred cccCCCCCCCHHHHH----HhhhhhcCCeeEEEEEcCCC-ceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVD----TLISLEMGSAMRISILKLDG-TSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~----s~Iale~GqAm~l~V~k~Dg-s~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|. .... .+|.-..+.|.+... ..|..| .=.+..+-.+||+..
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~rg~afV--~f~~~~~A~~Ai~~l 72 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDYQLKAVV--QMENLQDAIGAVNSL 72 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCSTTCCEEE--EESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCCCeEEEE--EECCHHHHHHHHHHh
Confidence 356899999999998 4444 789888888875533 234333 335677788888754
No 187
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=62.32 E-value=25 Score=21.72 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=40.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+.. +.+-......=.+..+-++||+..
T Consensus 20 ~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 20 FVGNLEARVREEILYELFL-QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 4568999999999988776 57888888887643 433334444556677888888753
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.15 E-value=26 Score=23.03 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=44.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeecc
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk 115 (128)
+...||.++|.++|..+.+ .+|.-..+.+.+.-| |..| .=.+..+-++||+..=..... +.+-++.|.
T Consensus 14 ~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~g--~afV--~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 81 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFS-RFGSLGRVLLPEGGI--TAIV--EFLEPLEARKAFRHLAYSKFH--HVPLYLEWA 81 (111)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCEEEEECCSSSS--CEEE--EESCHHHHHHHHHHHTTCBSS--SSBCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCC--EEEE--EeCCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 3568999999999998887 699888888876444 3333 335677788888754322211 334455553
No 189
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=61.37 E-value=31 Score=22.51 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=41.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|..... .+|.-..+.+.+. .|.+-......=.+..+-.+||+..
T Consensus 30 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp EEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 3568999999999998875 6888777777654 3444445555567888888898754
No 190
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=61.24 E-value=16 Score=25.38 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=37.9
Q ss_pred hhhhhcCCeeEEEEEcCCCceeeE------EEeCCCcHHHHHHHHHHHHhhh
Q 033077 57 LISLEMGSAMRISILKLDGTSFDV------AVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 57 ~Iale~GqAm~l~V~k~Dgs~~~V------vV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|.-.+...+-|.|.+..++.+|+ .||.+.||.++..-|++.+.+.
T Consensus 19 ~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~ 70 (110)
T 2r2q_A 19 KIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLR 70 (110)
T ss_dssp HHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCC
Confidence 445567789999999998877766 7899999999999999988553
No 191
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=61.15 E-value=20 Score=21.67 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCc---eeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT---SFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs---~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|....+ .+|.-..+.+.+...+ +-......=.+..+-.+|++.
T Consensus 8 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 3568999999999998875 5888877777665422 222333444677788888884
No 192
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=61.11 E-value=14 Score=24.07 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.+.+.. |.+-......=.+..+-.+||+.
T Consensus 44 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 3568999999999998887 68988788877652 33222333333456677788774
No 193
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=60.94 E-value=35 Score=23.15 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=40.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+...||.++|-+||..+.+ .+|.-..+.+.|.-| |..|- -.+..+-++||+..-
T Consensus 25 ~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~~kg--~AFVe--f~~~~~A~~Av~~ln 78 (100)
T 3r27_A 25 HIRGLIDGVVEADLVEALQ-EFGPISYVVVMPKKR--QALVE--FEDVLGACNAVNYAA 78 (100)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEETTTT--EEEEE--ESSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEcCCC--EEEEE--ECCHHHHHHHHHHhc
Confidence 3458999999999976664 799999999887544 44443 357788888887643
No 194
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.92 E-value=15 Score=23.71 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=38.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCee--------EEEEEc--CCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAM--------RISILK--LDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm--------~l~V~k--~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|.++|....+ .+|.-. .+.|.+ ..|.+--.....=.+..+-++||+..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp EEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 4668999999999987775 466654 355554 34444334444556788888998753
No 195
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=60.89 E-value=17 Score=23.77 Aligned_cols=56 Identities=5% Similarity=0.110 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.|.+.- |.+-......=.+..+-.+||+.
T Consensus 29 fV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 3567999999999998876 68998888887753 33222222233577888888874
No 196
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.85 E-value=29 Score=21.92 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=41.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+. .|.+--.....=.+..+-.+||+.
T Consensus 19 ~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4567999999999998875 5888878887765 355444455555678888899984
No 197
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.79 E-value=18 Score=22.74 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|.++|.....- +|.-..+.|.+. .+.+-......=++..+-.+||+..
T Consensus 16 ~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 16 YVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp EEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 35689999999999888764 787777777654 2334444555667888889998753
No 198
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=60.67 E-value=25 Score=22.44 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+. .|.+-......=.+..+-.+||+..
T Consensus 30 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 30 FVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88 (110)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 3568999999999988775 6788777877654 3443334444556788888888753
No 199
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.65 E-value=21 Score=22.99 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+.-| |..| .=.+..+-.+||+..
T Consensus 29 ~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g--~afV--~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 29 YCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPEKG--YSFV--RFSTHESAAHAIVSV 81 (109)
T ss_dssp EEECCSSCCCHHHHHHHHH-HHSCEEEEEEETTTT--EEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCCCC--EEEE--EECCHHHHHHHHHHc
Confidence 4568999999999998887 799988888887633 3333 335667777888654
No 200
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=60.37 E-value=40 Score=23.42 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=44.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
++.+||.++|.++|..... .+|.-..+.|.+. +|.+--.....=.+..+-.+|++..=
T Consensus 129 ~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 129 YVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 4558999999999998875 6898888888876 45554455556678888888987543
No 201
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=59.97 E-value=32 Score=22.91 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.|.+. .|.+--.....=.+..+-.+||+.
T Consensus 46 ~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 46 MVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3568999999999988775 5788777777665 343333444445678888888874
No 202
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=59.91 E-value=26 Score=24.39 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=40.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|.++|....+ .+|.-..+.+.+. +|.+-......=++..+-.+|++..
T Consensus 32 ~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 32 YVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHc
Confidence 4568999999999998876 6788777877664 3433333444456788888888753
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=59.71 E-value=25 Score=24.15 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|.++|..... .+|.-..+.+.+. .|.+-......=.+..+-.+|++.
T Consensus 118 ~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 118 FIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp EEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3557999999999998877 6898888888776 554444444444555666778774
No 204
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.62 E-value=20 Score=22.63 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=35.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+| .|.+.+. .+.+--.....=.+..+-++||+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~g---~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 19 VLSNLSYSATEETLQEVFE-KAT---FIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp EEESCCTTCCHHHHHHHCS-SCS---EEECCBCSSSCBCSEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCC---EEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 3568999999999988766 355 3344443 343333444455778888888874
No 205
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.82 E-value=33 Score=22.02 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+. .+.+-......=.+..+-.+||+.
T Consensus 29 ~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLK-PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4568999999999988775 5888888887765 333333444445677888888874
No 206
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=58.60 E-value=23 Score=25.16 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=32.9
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
..+.+.|..+=-.|..+.+.|+.+||+.|+|.-+=+..
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 45788999999999999999999999999998765543
No 207
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=58.28 E-value=16 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred ccCCCCCC------CHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 42 LADVPKKP------TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 42 L~DlP~~v------T~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
...||.++ |.++|..... .+|.-..+.+.+..|.+--.....=++..+-.+||+
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~ 65 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVK 65 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHT
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHH
Confidence 45789888 5677776654 689888888877666554444445567778888876
No 208
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.21 E-value=9.9 Score=27.04 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=31.8
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+-..|-+-|.+.+.|.++-++|+.|+++++..++..
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~ 45 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQY 45 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTS
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcC
Confidence 346788889999999999999999999999999853
No 209
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=58.04 E-value=23 Score=25.24 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=33.9
Q ss_pred cCCcccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 38 DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 38 ~DplL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
-+...+|-+..++.++-.-. ..+.-|+|.|.-.||..+.+-|.++.++.-|+.|......
T Consensus 16 ~~~~~~~~~~~~~~~~~~~k---~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G 75 (115)
T 3kyd_D 16 PRSHMSDQEAKPSTEDLGDK---KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG 75 (115)
T ss_dssp --------------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT
T ss_pred CCCccccccccCccccccCC---CCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC
Confidence 34444555555554332211 1278999999999999999999999999999999887764
No 210
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.97 E-value=31 Score=21.39 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=38.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEE-EEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRI-SILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l-~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|..... .+|.-..+ .|.+.-.+.. ....=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~~--afV~f~~~~~a~~Ai~~l 74 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETAV--VNVTYSSKDQARQALDKL 74 (96)
T ss_dssp EEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSEE--EEEEESSHHHHHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCCE--EEEEECCHHHHHHHHHHh
Confidence 3567999999999998887 78987777 3555444433 333446777888888743
No 211
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=57.90 E-value=7.8 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
|++|.+++.+.++..-.+.|.- +-.+++.++++.+...
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v--~~~~~~~~~~~~~~~~ 38 (121)
T 1p9y_A 1 GSHMQVSVETTQGLGRRVTITI--AADSIETAVKSELVNV 38 (121)
T ss_dssp ---CEEEEEECSTTEEEEEEEE--CHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEECCCcEEEEEEEE--CHHHHHHHHHHHHHHH
Confidence 7899999999998764444422 2356777777777554
No 212
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.78 E-value=32 Score=21.57 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=35.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhc--CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEM--GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~--GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+ |.-..+.+.|. |..| .=.+..+-.+||+..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~~g----~afV--~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 19 YVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKIRD----YAFV--HFSNREDAVEAMKAL 71 (99)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSTTCEEEEEECSS----EEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEeCC----eEEE--EeCCHHHHHHHHHHh
Confidence 4568999999999988776 45 77777766654 3333 345677788888743
No 213
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=56.62 E-value=23 Score=22.29 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=23.7
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+..++...++- ..|+.++|+|.| +|..+.+.+
T Consensus 53 ~~~d~~~~~~~~~~g~~v~l~v~R-~g~~~~~~v 85 (87)
T 2i6v_A 53 DPNVMNTLFQSMNEMTEMSLTVER-DGQQHDVYI 85 (87)
T ss_dssp CHHHHHHHHHTGGGCSEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEE-CCEEEEEEE
Confidence 56788877764 579999999999 456665554
No 214
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=56.36 E-value=19 Score=27.92 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=34.4
Q ss_pred hcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 61 EMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 61 e~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..+.-|+|.| +.+|..+.+-|.++.++.-|+.|......
T Consensus 25 ~~~~~I~LkV-~~~g~~v~fkIk~~t~l~kL~~ay~er~G 63 (200)
T 3pge_A 25 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG 63 (200)
T ss_dssp CCCCCEEEEE-ECSSCEEEEEECTTSCTHHHHHHHHHHHS
T ss_pred CCCCeEEEEE-ecCCCEEEEEEecCCHHHHHHHHHHHHhC
Confidence 5588899999 57999999999999999999999987654
No 215
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.55 E-value=35 Score=21.31 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+.-| +..| .=.+..+-.+||+..
T Consensus 21 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~~g--~afV--~f~~~~~A~~A~~~l 73 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFD-RFGSIRTIDHVKGDS--FAYI--QYESLDAAQAACAKM 73 (97)
T ss_dssp EEECCCSSCCHHHHHHHHH-TTSCEEEEEECSSSC--CEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCCCC--EEEE--EECCHHHHHHHHHHH
Confidence 3568999999999988775 789888888876533 3333 335677888888754
No 216
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=55.45 E-value=32 Score=20.88 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=39.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.+.+.. |.+-......=.+..+-.+||+.
T Consensus 15 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 3568999999999998874 68988888887653 44433444444566777788853
No 217
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=55.24 E-value=18 Score=24.11 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=37.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.+.+. .|.+-......=++..+-.+|++.
T Consensus 7 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 7 FIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp EECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3578999999999998876 6888878887765 233222222233455677788874
No 218
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=54.85 E-value=53 Score=23.16 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=41.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcC--CeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~G--qAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+..+||.++|-++|..+.. .+| .-..+.|.+. .|.+--.....=.+..+-.+||+.
T Consensus 59 fVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4568999999999998884 789 7777877754 565533333444678888888875
No 219
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.84 E-value=38 Score=23.28 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC------eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS------AMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq------Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|. .++|...+ +|.+--.....=++..+.++||++
T Consensus 27 ~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 27 RMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 4568999999999998886 4563 45544433 565544555566788899999975
No 220
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=54.69 E-value=20 Score=26.10 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=38.5
Q ss_pred HhhhhhcCCeeEEEEEcCCCce-eeE------EEeCCCcHHHHHHHHHHHHhhh
Q 033077 56 TLISLEMGSAMRISILKLDGTS-FDV------AVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 56 s~Iale~GqAm~l~V~k~Dgs~-~~V------vV~~~ATV~dLKkAI~~~~~~~ 102 (128)
..|.-.+...+-|.|.|..++. +|+ .||.+.||.++...|++.+.+.
T Consensus 26 ~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~ 79 (130)
T 2zjd_A 26 RLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLN 79 (130)
T ss_dssp HHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCC
Confidence 3456677889999999998877 544 5899999999999999998654
No 221
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=54.56 E-value=15 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=32.3
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
+-..|.+-|.+++.|.++-++|+.|++.++..++..
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~ 45 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQY 45 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTT
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhcc
Confidence 456788889999999999999999999999999854
No 222
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.40 E-value=34 Score=22.13 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.|.+.- +.+--.....=.+..+-.+||+.
T Consensus 31 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 4668999999999998875 68888888887752 33333333445677888888875
No 223
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=54.18 E-value=44 Score=22.06 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=41.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+...||.++|-++|..... .+|.-..+.|.+.. |.+--.....=.+..+-++||+.
T Consensus 10 fV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3568999999999998775 78998888888764 33333344445667888888875
No 224
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=54.10 E-value=10 Score=22.54 Aligned_cols=56 Identities=7% Similarity=0.121 Sum_probs=37.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.-..+.+.+.. |.+-......=.+..+-++||+.
T Consensus 3 ~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 3578999999999998876 57887777776542 33322333334556677888873
No 225
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=53.93 E-value=46 Score=22.12 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=41.1
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCc----eeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT----SFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs----~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
..+||.++|-++|..... .+|.-..+.+.+.-.+ +--.....=++..+-++|++..
T Consensus 8 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 468999999999998876 6898777877765433 3334444557778888888764
No 226
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=53.80 E-value=13 Score=24.36 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=37.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC--eeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS--AMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq--Am~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||+++|-++|....+ .+|. ...+.+.|. .|.+--..-..=.+..+-.+||+..
T Consensus 13 fV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp EEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh
Confidence 4678999999999999886 6773 345555554 3443222333445667778888764
No 227
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=53.61 E-value=26 Score=26.29 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=38.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcC--CeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~G--qAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..+.. .+| .-..+.|.+. .|.+--.....=.+..+.++||+.
T Consensus 72 fVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 72 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5678999999999998885 789 7888887765 444322222233455667778764
No 228
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=53.46 E-value=44 Score=21.86 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=46.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccc
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQV 116 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~ 116 (128)
++.+||.++|-++|..... .+|.-..+.|.+.. |.+-......=.+..+-++||+..=.... .+..=+|+|..
T Consensus 39 ~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~ 112 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQLVA 112 (124)
T ss_dssp EEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEEeC
Confidence 3568999999999988776 48887777777653 33333344455678888889885433221 23344555543
No 229
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=53.40 E-value=19 Score=25.92 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 45 lP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+|.-++.+||..-..-.+||.|.|+-. |. +..||- .+=.||-+||+-
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~---EllIpl-~sQeDLDkaIel 70 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT--NN---ELVIPL-TTQDDLDKAVEL 70 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC--SS---SSCEEC-CSHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe--cc---eEEEec-cCHHHHHHHHHH
Confidence 578899999999999999999999988 22 222322 456899999997
No 230
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.22 E-value=35 Score=22.60 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC-----eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq-----Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|.....- +|. .++|...+. |.+--.....=.+..+.++||+
T Consensus 21 ~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG
T ss_pred EEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 46789999999999887753 565 455544444 6554455555677888899987
No 231
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=53.11 E-value=18 Score=27.72 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=28.3
Q ss_pred eeEEEEEcCCCce--eeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 65 AMRISILKLDGTS--FDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 65 Am~l~V~k~Dgs~--~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
++.|++++..... +.+.+.+.+||.+|++.+.+.|..-
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~ 178 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIP 178 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCC
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCC
Confidence 4556666666543 3455589999999999999999763
No 232
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=52.89 E-value=23 Score=22.82 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=30.2
Q ss_pred cCCccc--CCCCCCCHHHHHHhhhhh-cCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVPKKPTLSDVDTLISLE-MGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP~~vT~~Ev~s~Iale-~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.|-. +..++...|.-. .|+.++|+|.| +|..+.+.|
T Consensus 25 GD~Il~InG~~v~-~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 70 (94)
T 2kl1_A 25 GDRIAAIDGQPIN-TSEQIVSYVREKQAGDRVRVTFIR-DRKQHEAEL 70 (94)
T ss_dssp TCEEEEETTBCCC-CHHHHHHHHHHSCTTCCEEEEEEE-TTEEEEEEE
T ss_pred CCEEEEECCEECC-CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEE
Confidence 455554 33322 568888888765 69999999999 567777766
No 233
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=52.32 E-value=29 Score=23.02 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|.++|..... .+|.-..+.+.+. .|.+-......=.+..+-++|++.
T Consensus 7 ~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 7 IVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp EEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh
Confidence 3568999999999998876 5788777777654 444433334445678888888874
No 234
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=52.30 E-value=23 Score=25.52 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=48.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeecccccc
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIA 119 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~VW~ 119 (128)
++..||.++|-++|..+.+ .+|.-..+.|.+.. |.+--.....=.+..+-.+||+..=.... .+-.=+|.|...-.
T Consensus 92 ~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 92 LVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQLVASQI 168 (177)
T ss_dssp EEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCEEEEESSGG
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEEEEecCCC
Confidence 3568999999999998887 58987778777643 33222333334567788888874332211 24455677754433
No 235
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.66 E-value=21 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred hhhhcCCeeEEEEEcCCCceeeE------EEeCCCcHHHHHHHHHHHHhhh
Q 033077 58 ISLEMGSAMRISILKLDGTSFDV------AVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 58 Iale~GqAm~l~V~k~Dgs~~~V------vV~~~ATV~dLKkAI~~~~~~~ 102 (128)
|.-.+-..+=|.|.|..++.+|+ -||.+.||.++...|++.+.+.
T Consensus 29 ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~ 79 (125)
T 3m95_A 29 IRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 79 (125)
T ss_dssp HHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCC
T ss_pred HHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCC
Confidence 44557788889999988877654 5899999999999999998664
No 236
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.57 E-value=48 Score=21.69 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=45.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-Cc--eeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccc
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GT--SFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQV 116 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs--~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~ 116 (128)
+...||.++|.++|..... .+|.-..+.|.+.- |. -|..|. =.+..+-.+||+ .+-. .=++.+-.|.|+.
T Consensus 15 fV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~g~~rG~aFV~--F~~~e~a~~Ai~--~~~~-~~~gr~l~V~~~~ 87 (103)
T 1s79_A 15 YIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVV--FDSIESAKKFVE--TPGQ-KYKETDLLILFKD 87 (103)
T ss_dssp EEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCTTSCCCEEEEE--ESSHHHHHHHHT--SSCC-CCTTTTCEEEEHH
T ss_pred EEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCCCCCccEEEEE--ECCHHHHHHHHH--cCCC-EECCEEEEEEEch
Confidence 3468999999999998776 68988888888743 22 233333 356778888887 2211 1124455666653
No 237
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=51.50 E-value=26 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCeeEEEEEcC-------CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 63 GSAMRISILKL-------DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 63 GqAm~l~V~k~-------Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
-.+|+++|+-. +.....+.++..+||.||...+...+
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 34688888643 33567788888899999999987765
No 238
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=51.26 E-value=26 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=26.0
Q ss_pred CHHHHHHhhhhh-cCCeeEEEEEcCCCceeeEEEe
Q 033077 50 TLSDVDTLISLE-MGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 50 T~~Ev~s~Iale-~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
+..++...|.-. .|+.++|+|.| ||..+.+.|.
T Consensus 90 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v~ 123 (134)
T 2l97_A 90 SSTDLQSALYNHSIGDTIKITYYR-NGKEETTSIK 123 (134)
T ss_dssp CHHHHHHHHHHSSTTCEEEEEEEE-TTEEEEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEEE
Confidence 457888887755 69999999999 6777777774
No 239
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.24 E-value=43 Score=21.10 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|.....-- | -..+.+.+.. +.+--.....=.+..+.++||
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 466899999999999888755 6 7777777653 444334444456788888888
No 240
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.14 E-value=43 Score=20.97 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-..+.+.+.-| |..| .=.+..+-.+||+..
T Consensus 19 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~kg--~afV--~f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 19 FVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKDKG--FGFI--RLETRTLAEIAKVEL 71 (99)
T ss_dssp EEESCCTTCCHHHHHHHTS-TTCCCSEEEEETTTT--EEEE--ECSSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecCCC--EEEE--EECCHHHHHHHHHHh
Confidence 3568999999999988775 688888888887533 3333 335566777888643
No 241
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=50.70 E-value=43 Score=23.69 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 45 lP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
.|..+..+||..-..-++||+|.+.-. ... +.|| =.+=.||-|||+-
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~---nnE--L~iP-L~~Q~DLDkAvel 66 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYM---NNE--LSIL-LKNQDDLDKAIDI 66 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEE---CSS--CEEE-CCSHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cce--eEEe-ccCHHHHHHHHHH
Confidence 578899999999999999999999988 222 2232 2467899999985
No 242
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=50.47 E-value=54 Score=24.15 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHH---hhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s---~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..+||.++|.++|.. .+--.+|.-..+.+.+ +|.+--.....=.+..+-.+||+..
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l 72 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSM 72 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 3568999999999864 3445788888888887 5554444445567888888888754
No 243
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=50.33 E-value=51 Score=21.60 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=42.3
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..||.++|.++|..... .+|.-..+.+.+. +|.+--.....=.+..+-.+|++..
T Consensus 92 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 92 VGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 457999999999998884 6898888888765 4555445555667888888888754
No 244
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=50.27 E-value=60 Score=24.09 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=42.9
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+.+||..+|-++|..... .+|.-..+.|.+. +|.+--.....=++..+-.+||+..
T Consensus 101 v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 457999999999998885 7898888888766 3444444555667888889999875
No 245
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.99 E-value=29 Score=30.28 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
|+.|.+.|.-+|| ++.|.|..++|+.||=..|-+++.+.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~ 40 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR 40 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 6789999999999 68899999999999999999998774
No 246
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=49.95 E-value=20 Score=23.88 Aligned_cols=54 Identities=7% Similarity=0.178 Sum_probs=39.3
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~ 96 (128)
+.+||.++|.++|..... .+|.-..+.|.+.. |.+--.....=.+..+-.+|++
T Consensus 92 V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 92 VGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp EEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 457999999999998887 78988888887753 4333333344467778888886
No 247
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.89 E-value=37 Score=20.86 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCC--ceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg--s~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-..+.+.+... .+-......=.+..+-.+||+.
T Consensus 20 ~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 20 YVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp EEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4568999999999988775 588877888876532 2212222333567788888863
No 248
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=49.77 E-value=23 Score=26.85 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCc--eeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 65 AMRISILKLDGT--SFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 65 Am~l~V~k~Dgs--~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
++.+++.+.... .+.+.+.+.+||.+|++.+.+.|..-
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~ 166 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIP 166 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCC
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCC
Confidence 567777777654 34566699999999999999999763
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=49.72 E-value=46 Score=23.25 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=38.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC-----eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq-----Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|.....- +|. .++|...+. |.+--.....=++..+.++||+
T Consensus 48 fVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp EEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 46789999999999887763 676 445444444 6554455556678889999988
No 250
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=49.52 E-value=23 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=23.2
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+..++...+.- ..|+.++|+|.| +|..+.+.|
T Consensus 71 ~~~d~~~~~~~~~~g~~v~l~v~R-~g~~~~~~v 103 (105)
T 2i4s_A 71 DPNVMNTLFQSMNEMTEMSLTVER-DGQQHDVYI 103 (105)
T ss_dssp STTHHHHHHHHHTTCSEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCeEEEEEEE-CCEEEEEEE
Confidence 45677777763 679999999999 556666554
No 251
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=49.14 E-value=28 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=37.3
Q ss_pred hhhhhcCCeeEEEEEcCCCceeeE------EEeCCCcHHHHHHHHHHHHhhh
Q 033077 57 LISLEMGSAMRISILKLDGTSFDV------AVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 57 ~Iale~GqAm~l~V~k~Dgs~~~V------vV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|.-.+-..+=|.|.|..++.+|+ -||.+.||.++..-|++.+.+.
T Consensus 23 ~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~ 74 (119)
T 3h9d_A 23 KVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLE 74 (119)
T ss_dssp HHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCC
Confidence 355567788889999988877654 5899999999999999998654
No 252
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=49.12 E-value=14 Score=26.40 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=33.7
Q ss_pred CCCCCCHHH----HHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHH
Q 033077 45 VPKKPTLSD----VDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLA 94 (128)
Q Consensus 45 lP~~vT~~E----v~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkA 94 (128)
+|.+.|+.+ |+..|.|..++|+-|.|. + + ..+.++|+.+|=+.
T Consensus 54 Vp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn---~-~---~p~~~~~m~~lY~~ 100 (119)
T 3h9d_A 54 VPSDLTVGQFVSVLRKRVQLEAESALFVYTN---D-T---VLPSSAQMADIYSK 100 (119)
T ss_dssp EETTCBHHHHHHHHHHHHTCCTTSCCEEEET---T-E---ECCTTSBHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEEEC---C-c---CCCccchHHHHHHH
Confidence 689999977 567788999999999994 3 2 33778999988654
No 253
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.90 E-value=43 Score=20.11 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|....+ .+|.-..+.+.+.-| +..| .=.+..+-.+|++..
T Consensus 16 ~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~kg--~afV--~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 16 YVGGLGDTITETDLRNHFY-QFGEIRTITVVQRQQ--CAFI--QFATRQAAEVAAEKS 68 (85)
T ss_dssp EEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGGGT--EEEE--EESSHHHHHHHHHTT
T ss_pred EEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECCCC--EEEE--EECCHHHHHHHHHHh
Confidence 3568999999999998876 689988888887433 3322 335677778888754
No 254
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=47.69 E-value=15 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=25.1
Q ss_pred CHHHHHHhhhhh-cCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISLE-MGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Iale-~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+.+++...|+-. .|+.++|+|.| +|..+.+.|
T Consensus 34 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 66 (91)
T 2kjp_A 34 SAEKLIDYISSKKAGDKVTLKIER-EEKEKRVTL 66 (91)
T ss_dssp SHHHHHHHHSSCCSSCEECEEEES-SSCEECCCE
T ss_pred CHHHHHHHHHcCCCCCEEEEEEEE-CCEEEEEEE
Confidence 567888888765 69999999999 566666655
No 255
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=47.36 E-value=43 Score=27.83 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|.++|..+.+ .+|.-..|.|.+. .|.+--.....=++..+..+||+.
T Consensus 106 fV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 4568999999999988876 4898888887754 444444445556778888888875
No 256
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=46.96 E-value=35 Score=22.04 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=24.6
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+.+++...++- ..|+.++|+|.| +|..+.+.|
T Consensus 40 ~~~dl~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 72 (100)
T 3i18_A 40 SSQEFIDYIHSKKVGDTVKINYKH-GDKNEQADI 72 (100)
T ss_dssp SHHHHHHHHHTSCTTCEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEEEEE-CCEEEEEEE
Confidence 56788888875 469999999999 666666655
No 257
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=46.76 E-value=32 Score=27.34 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=34.0
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+.-|+|.| +.||..+.+-|.++.++.-|+.|.......
T Consensus 52 ~dp~e~InLKV-k~dG~eV~FKIKrtTpL~KLmeAYcERqGL 92 (207)
T 3tix_A 52 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGK 92 (207)
T ss_dssp ---CCEEEEEE-ECSSCEEEEEEETTSCTHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEE-ecCCCEEEEEEccCChHHHHHHHHHHHhCC
Confidence 34589999999 579999999999999999999999886643
No 258
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=46.68 E-value=8.2 Score=24.54 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhhhcCCcccCCCCCCCHHHHHHhhh
Q 033077 23 TMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLIS 59 (128)
Q Consensus 23 ~~~~~~~~~~L~~ll~DplL~DlP~~vT~~Ev~s~Ia 59 (128)
+.+.+.++..|..+..+..|+.+....+++++...|.
T Consensus 51 ~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~~~l~ 87 (89)
T 3coq_A 51 ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLT 87 (89)
T ss_dssp HHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHHHHHh
Confidence 4567888889999888887887777888888887764
No 259
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.49 E-value=33 Score=21.98 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=35.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCe----eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSA----MRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqA----m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|..... .+|.- +.+.+. .|.+-......=.+..+-.+||+.
T Consensus 29 ~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 29 YLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp EEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHH
Confidence 3568999999999987665 45653 344433 554433444455678888888874
No 260
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=46.48 E-value=23 Score=22.90 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHH
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLA 94 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkA 94 (128)
|+++|.=.....-.+.++..+||+||=+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~ 29 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA 29 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH
Confidence 45555544334455788999999998654
No 261
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.46 E-value=32 Score=22.07 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeE-EEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMR-ISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~-l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|.-.. +.|.+. +|.+--.....=.+..+.++||+.
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp EEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4668999999999988765 5675444 555443 333322333344678899999986
No 262
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=45.76 E-value=54 Score=22.24 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred cCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 43 ~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
..||.+|...+ ....+|.|+=-||+.+.-....+.||.+|..-|+..
T Consensus 10 ~~lp~EP~~~~---------~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~ 56 (109)
T 2cr5_A 10 PDLPEEPSETA---------EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV 56 (109)
T ss_dssp CCCCCCCCSSC---------SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH
T ss_pred ccCCCCCCCCC---------CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc
Confidence 35777776321 357899999999999988889999999999999854
No 263
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=45.73 E-value=34 Score=24.06 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=36.3
Q ss_pred hhhhhcCCeeEEEEEcCCCceeeE------EEeCCCcHHHHHHHHHHHHhhh
Q 033077 57 LISLEMGSAMRISILKLDGTSFDV------AVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 57 ~Iale~GqAm~l~V~k~Dgs~~~V------vV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|.-.+...+-|.|.|..++.+|+ .||.+.||.++..-|++.+.+.
T Consensus 20 ~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~ 71 (117)
T 1eo6_A 20 KIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLP 71 (117)
T ss_dssp HHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCC
Confidence 445567788899999987765533 6899999999999999988654
No 264
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=45.44 E-value=48 Score=24.04 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 45 lP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
.|..+..+||..-..-++||+|.|.-. ... +.|| =.+=.||-|||+-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~---nnE--L~IP-L~~Q~DLDkAvel 93 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYM---NNE--LSIL-LKNQDDLDKAIDI 93 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEE---CSS--CEEE-CCSHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cce--EEEe-cccHHHHHHHHHH
Confidence 678899999999999999999999988 222 2232 2466899999985
No 265
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=45.31 E-value=52 Score=22.46 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.2
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
...+|.|+=-||+.+.-....+.||.+|..-|+.+.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~ 47 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV 47 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc
Confidence 357899999999999999999999999999998874
No 266
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.28 E-value=51 Score=20.21 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=36.7
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+..||.++|-++|..... .+|.-..+.+.|. +..| .=.+..+-.+||+.
T Consensus 13 V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~g----~afV--~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFE-QYGKVLECDIIKN----YGFV--HIEDKTAAEDAIRN 61 (90)
T ss_dssp EESCCSSCCHHHHHHHHH-TSSCEEEEEEETT----EEEE--EESSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC----EEEE--EECCHHHHHHHHHH
Confidence 568999999999988776 6898888888853 3322 33567788888874
No 267
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.96 E-value=58 Score=21.44 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=38.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..+.. .+|.-..+.+.+. .-|..|-- .+..+-.+||+..
T Consensus 19 ~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~--kg~aFVef--~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 19 HIRKLPGEVTETEVIALGL-PFGKVTNILMLKG--KNQAFLEL--ATEEAAITMVNYY 71 (101)
T ss_dssp EEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT--TTEEEEEE--SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3468999999999986654 7999999988875 33444433 5667777888753
No 268
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=44.95 E-value=82 Score=22.48 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=42.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..+||.++|-++|..+.. .+|.-..+.|.+. .|.+--.....=.+..+-.+||+..
T Consensus 19 fVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 19 YVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHh
Confidence 4568999999999988775 6888777877764 3555445555567788888898753
No 269
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Probab=44.35 E-value=6.2 Score=29.11 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=21.5
Q ss_pred ccCchhHHHHHHHHHHHhhhcCCcccC
Q 033077 18 DYNSSTMKKARLHSTLTALLDDPILAD 44 (128)
Q Consensus 18 ~~~~~~~~~~~~~~~L~~ll~DplL~D 44 (128)
.|+-.+- ++.++.+|++||.||+|-|
T Consensus 98 ~yst~ee-ralvrtelaalladpl~~d 123 (132)
T 1qbe_A 98 QYSTDEE-RAFVRTELAALLASPLLID 123 (132)
T ss_dssp TTCCHHH-HHHHHHHHHHHHHSHHHHH
T ss_pred ecccHHH-HHHHHHHHHHHhcChHHhh
Confidence 4665555 8999999999999998865
No 270
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=44.17 E-value=24 Score=22.13 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.0
Q ss_pred cCCccc--CCCC-CCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 38 DDPILA--DVPK-KPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 38 ~DplL~--DlP~-~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
.|-+++ +.|- +.+.+++...|.-. |+.++|.|.|.+..
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 48 EDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 566654 3332 35899999999876 99999999997754
No 271
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.75 E-value=43 Score=21.81 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=37.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-----CceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-----GTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-----gs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|....+ .+|.-. +.+.+.. |.+--.....=.+..+.++||+..
T Consensus 12 fVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 12 FVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp EEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred EEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3568999999999988776 677655 5554433 222223334456778888998854
No 272
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=42.52 E-value=20 Score=26.55 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=26.5
Q ss_pred eeEEEEEcCCC---ceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISILKLDG---TSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~k~Dg---s~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
..+|.|.=.+- --=.|.|+.++|..+|-.+||..|.
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 34555544432 2237899999999999999999995
No 273
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.50 E-value=30 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.6
Q ss_pred CceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 75 GTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 75 gs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+...|...||=.|.|+||+..|.-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~V 49 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNV 49 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCC
Confidence 457788899999999999999999953
No 274
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.41 E-value=35 Score=21.99 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.0
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhc-CCeeEEEEEcCCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEM-GSAMRISILKLDG 75 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~-GqAm~l~V~k~Dg 75 (128)
.|-+|+ +.| ...+.+|+...|.-.. |+.++|+|.|.+.
T Consensus 51 GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 51 GDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp SCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 565553 333 2357899999998764 9999999999654
No 275
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=42.26 E-value=27 Score=22.50 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=36.0
Q ss_pred cccCCCCCC------CHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKP------TLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~v------T~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
+...||..+ |.++|....+ .+|.-..+.+.+..|.+--.....=++..+-.+||+.
T Consensus 19 ~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 19 VVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 355799888 6677776664 6899888888876664433333333445566777764
No 276
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=41.27 E-value=76 Score=22.60 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 45 lP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
.|.-+..+||..-..-++||.|.|.-.-- .+.||= .+=.||-+||+-
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~nn-----EL~iPL-~~Q~DLDkAvel 82 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN-----ELVIPL-TTQDDLDKAVEL 82 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEEET-----TEEEEC-CCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEec-ccHHHHHHHHHH
Confidence 67889999999999999999999998821 233432 467899999986
No 277
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=41.16 E-value=37 Score=22.16 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=28.6
Q ss_pred cCCccc--CCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEe
Q 033077 38 DDPILA--DVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 38 ~DplL~--DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
.|-+++ +.|-. +..++...| ..|+.++|+|.| +|..+.+.+.
T Consensus 56 GD~I~~ing~~v~-~~~~~~~~l--~~g~~v~l~v~R-~g~~~~~~v~ 99 (112)
T 2p3w_A 56 GDIIVKVNGRPLV-DSSELQEAV--LTESPLLLEVRR-GNDDLLFSIA 99 (112)
T ss_dssp TCEEEEETTEECC-SHHHHHHHH--HHCSSEEEEEEE-TTEEEEEEEC
T ss_pred CCEEEEECCEECC-CHHHHHHHH--hCCCeEEEEEEE-CCEEEEEEEE
Confidence 455554 33322 578888777 469999999999 5667777764
No 278
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.99 E-value=53 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=30.8
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+.+-+.|-..||++-.|.|..+.|+.|+=+-+..+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRA 43 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSS
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHc
Confidence 457788999999999999999999999877666555
No 279
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=40.99 E-value=1e+02 Score=22.34 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=46.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccc
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQV 116 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~ 116 (128)
+...||.++|.++|....+ .+|.-..+++.+.- |.+--.....=.|..+-++||+.. +. .=+|.+=.|.|+.
T Consensus 113 ~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~--~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 113 YIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQ--KYKETDLLILFKD 185 (193)
T ss_dssp EEECCCTTCCHHHHHHHHT-TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TC--EETTEECEEEETT
T ss_pred EecCCCCcCCHHHHHHHHh-cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CC--eECCEEEEEEEhH
Confidence 3467999999999998887 78998888888743 333233444456777888888632 22 1123344566653
No 280
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.94 E-value=54 Score=21.20 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHH--HhhhhhcCCeeEEEEEcCCCc-------eeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVD--TLISLEMGSAMRISILKLDGT-------SFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~--s~Iale~GqAm~l~V~k~Dgs-------~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|. ..+=-.+|.-..+.|.+..++ -|..| .=.+..+-.+||+..
T Consensus 19 ~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV--~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 19 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV--TYIRSEDALRAIQCV 83 (111)
T ss_dssp EEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEE--EESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEE--EECcHHHHHHHHHHh
Confidence 456799999999998 244457899889988876542 24433 335677888888753
No 281
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=40.85 E-value=24 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.4
Q ss_pred CceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 75 GTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 75 gs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+...|..+||=.|.|+||+..|.-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~V 48 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDV 48 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 456788899999999999999999953
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=40.67 E-value=24 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC---CceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D---gs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|..... .+| -..+.+.+.. |.+--.....=.+..+-++||
T Consensus 23 ~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 23 FLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp EESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 3568999999999998877 578 7777777653 322222223345677888888
No 283
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=40.46 E-value=59 Score=24.04 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=40.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++.+||.++|.++|..... .+|.-..+.+.+..+..-......=++..+-.+|++
T Consensus 45 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 45 LVKNLPKSYNQNKVYKYFK-HCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp EEEEECTTCCHHHHHHHHG-GGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 4568999999999998776 589888888887543333444455567778888884
No 284
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=39.93 E-value=46 Score=21.64 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=29.9
Q ss_pred cCCccc--CCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeC
Q 033077 38 DDPILA--DVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (128)
Q Consensus 38 ~DplL~--DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~ 84 (128)
.|-+++ +.|-. +.+++...|.- |+.++|+|.| +|..+.+.|..
T Consensus 56 GD~I~~ing~~v~-~~~~~~~~l~~--~~~v~l~v~R-~g~~~~~~v~~ 100 (113)
T 2pzd_A 56 GDVILAIGEQMVQ-NAEDVYEAVRT--QSQLAVQIRR-GRETLTLYVTP 100 (113)
T ss_dssp TCEEEEETTEECC-SHHHHHHHHHH--CSSEEEEEEE-TTEEEEEEECC
T ss_pred CCEEEEECCEECC-CHHHHHHHHhC--CCeEEEEEEE-CCEEEEEEEEE
Confidence 555554 33332 67888887764 8999999999 67777777743
No 285
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=39.90 E-value=26 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.125 Sum_probs=20.7
Q ss_pred ceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 76 TSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 76 s~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
....+.++..+||.||..++...+.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p 42 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHP 42 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCc
Confidence 5567788888999999999987764
No 286
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=39.67 E-value=23 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.7
Q ss_pred eEEEEEcCCCceeeEEEeC--CCcHHHHH
Q 033077 66 MRISILKLDGTSFDVAVMN--SATVKDLK 92 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~--~ATV~dLK 92 (128)
.++.|.-+||+...|.|.. ++|+.||-
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~ 34 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM 34 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH
Confidence 5789999999999999988 89999994
No 287
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=39.34 E-value=83 Score=22.02 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
....+|.|+=-||+.+.-....+.||.+|..-|+..
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~ 76 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK 76 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888889999999999999999999999765
No 288
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=39.34 E-value=42 Score=21.73 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.9
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.| ...+.+++...|.-..|+.++|.|.|.+ ..+.+.+
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~~ 94 (112)
T 1qau_A 48 GDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP-EGFTTHL 94 (112)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECC-TTSEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCC-cccceEe
Confidence 566665 322 2346899999998778999999999965 4444444
No 289
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.23 E-value=89 Score=21.23 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=36.7
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeecc
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQ 115 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk 115 (128)
|++|+|.+.=. |..+-+.|+.+.+..+|..-|+..+... .+.+=.+.|+
T Consensus 4 ~~~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~---~~~~f~lky~ 52 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSFD---NEQLFTMKWI 52 (89)
T ss_dssp SSCEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTCC---SSCCEEEEEC
T ss_pred CCeEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCCC---CCCeEEEEEE
Confidence 67889988766 4578888899999999999999988642 1334455554
No 290
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=39.04 E-value=34 Score=23.61 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred eeEEEeCCCcHHHHHHHHHHHHh
Q 033077 78 FDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 78 ~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
+...|..+||=.|.|+||+..|.
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~ 47 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFG 47 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhC
Confidence 67788899999999999999994
No 291
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=39.02 E-value=40 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=20.4
Q ss_pred eEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 66 MRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
|.+.|.--||.. ..++..+|+.||-+.+.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLH 29 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHh
Confidence 445554446765 56788999999988773
No 292
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=38.91 E-value=32 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred CceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 75 GTSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 75 gs~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+...|...||=.|.|+||+..|.-
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~V 53 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEV 53 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 357788889999999999999999943
No 293
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.84 E-value=20 Score=24.10 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=33.4
Q ss_pred cCCccc--CCCC-CCCHHHHHHhhhhhc-CCeeEEEEEcCCCceeeEEEeCC
Q 033077 38 DDPILA--DVPK-KPTLSDVDTLISLEM-GSAMRISILKLDGTSFDVAVMNS 85 (128)
Q Consensus 38 ~DplL~--DlP~-~vT~~Ev~s~Iale~-GqAm~l~V~k~Dgs~~~VvV~~~ 85 (128)
.|-+|+ +.+- ..|.+++...|.-.. |+.++|.|.|.+...|+-.-+++
T Consensus 66 GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~ 117 (123)
T 1ueq_A 66 GDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117 (123)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCCCCSSCSSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCCCCCCCCCC
Confidence 566554 3332 357899999987664 99999999998876665433433
No 294
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=38.52 E-value=1.4e+02 Score=23.17 Aligned_cols=73 Identities=12% Similarity=-0.000 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhh-cCCcccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 25 KKARLHSTLTALL-DDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 25 ~~~~~~~~L~~ll-~DplL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
-...+...|+.+| .|| -.-+|.+|+...+.--..+.+.=....-......+.+....|+.+++..|++.+...
T Consensus 275 ~~~~l~~ll~~~L~~dP-----~~R~s~~e~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~ 348 (396)
T 4eut_A 275 LQVLLTPVLANILEADQ-----EKCWGFDQFFAETSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKII 348 (396)
T ss_dssp HHHHHHHHHHHHSCCCT-----TTSCCHHHHHHHHHHHHTCEEEEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHHHhhccCh-----hhhccHHHHHHHHHHHhhceEEEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCC
Confidence 3566778888888 677 456899999888876666666444444455666778888899999999999988654
No 295
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=38.44 E-value=72 Score=19.98 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|....+ .+|.-..+.+.+. .|.+-......=.+..+-.+||+..
T Consensus 27 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 27 FVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3568999999999988775 5788777777654 3444444555567788888898754
No 296
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=38.35 E-value=39 Score=20.88 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=36.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|.....- +|. |.+.+..+.+-......=.+..+-++||+.
T Consensus 20 ~V~nL~~~~t~~~l~~~F~~-~g~---v~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 20 LAKNLSFNITEDELKEVFED-ALE---IRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp EEESCCSSCCHHHHHHHHCS-EEE---ECCEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhh-CCc---EEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 35689999999999887653 442 222255565555555566788888999874
No 297
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=38.33 E-value=60 Score=22.39 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.0
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
++|+|-+-=.| ..|.+.||.+.+..||+.-|..-..
T Consensus 11 ~~~KVK~yy~D-DIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 11 KTTKIKFYYKD-DIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCEEEEECBTT-CCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CceEEEEEecC-cEEEEECCCCCCHHHHHHHHHHHhc
Confidence 68899888776 5999999999999999988877664
No 298
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=38.31 E-value=26 Score=22.40 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=39.5
Q ss_pred ccCCCC------CCCHHHHHHhhhhhcCCeeEEEEEcCC--CceeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPK------KPTLSDVDTLISLEMGSAMRISILKLD--GTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~------~vT~~Ev~s~Iale~GqAm~l~V~k~D--gs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
...||. ++|-++|....+ .+|.-..+.|.+.. |.+--.....=++..+-++||+.
T Consensus 11 V~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 11 VNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp EESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 457898 888888888776 68988888877654 33333444455677888899985
No 299
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=38.27 E-value=22 Score=23.02 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=35.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC---eeEEEEEcCC-CceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS---AMRISILKLD-GTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq---Am~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|..... .+|. -..+.|.+.. |.+--.....=.+..+.++||+
T Consensus 15 ~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 15 RAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp EEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 4668999999999988776 4444 3444444321 4332233334467788889987
No 300
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=38.03 E-value=58 Score=21.73 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeC
Q 033077 49 PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (128)
Q Consensus 49 vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~ 84 (128)
++.+++...|.-++.- -.|.|.-.||+.|.|+|.-
T Consensus 5 m~~~~I~~~L~~~l~~-~~l~V~~g~gshf~v~IVS 39 (82)
T 3tr3_A 5 VTTHDIKQWIETGLSE-SRVISAEGDGHHFEAVVLC 39 (82)
T ss_dssp CCHHHHHHHHHHHSTT-CEEEEEEECSSEEEEEEEC
T ss_pred chHHHHHHHHHhhCCC-cEEEEEcCCCCeEEEEEEc
Confidence 4678888888655543 3777776799999999954
No 301
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=38.00 E-value=33 Score=22.97 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=36.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeE--EEEEcC--CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMR--ISILKL--DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~--l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
++..||.++|-++|..+.. .+|.-.. +.|.+. .|.+--.....=.+. +-.+||+..=
T Consensus 27 fV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 27 ILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp EECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 4568999999999998876 7887733 455443 343322222334556 7778887643
No 302
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=37.83 E-value=34 Score=23.20 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhcCCc----ccCCCCCCCHHHHHHh
Q 033077 26 KARLHSTLTALLDDPI----LADVPKKPTLSDVDTL 57 (128)
Q Consensus 26 ~~~~~~~L~~ll~Dpl----L~DlP~~vT~~Ev~s~ 57 (128)
....++.+.++++||. |..=|..+|-+.|+.-
T Consensus 18 ~~~~~~~~~~vl~dP~V~~Fl~~h~~~l~~~~I~~s 53 (106)
T 2k7r_A 18 QKRLEQMKEKVMKDQDVQAFLKENEEVIDQKMIEKS 53 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHChhhCCHHHHHhh
Confidence 4555888999999984 5556778999888763
No 303
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=37.68 E-value=41 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.4
Q ss_pred ceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 76 TSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 76 s~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
..+...|...||=.|.|+||+..|.-
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~V 47 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKV 47 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 67888999999999999999999953
No 304
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=37.64 E-value=72 Score=21.44 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHHHhhhhhcC-CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMG-SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~G-qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..+||.++|-++|..... .+| .-..+.|.+.+..-|..|- =.+..+.++||+..
T Consensus 32 ~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~~~rGfaFV~--F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTRDFDGTGALE--FPSEEILVEALERL 87 (111)
T ss_dssp EEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSCSSSCCEEEE--ESSHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcCCCCCEEEEE--ECCHHHHHHHHHHc
Confidence 3457999999999988765 668 5556666433333344443 34678889998753
No 305
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.63 E-value=49 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=35.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCee--EEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAM--RISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm--~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++.+||.++|-++|..... .+|.-. .+...+..|.+--.....=++..+.++||+
T Consensus 29 ~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4668999999999988775 466543 333344455543344444456677888887
No 306
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=36.97 E-value=1.2e+02 Score=22.18 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+.+||.++|-++|..... .+|.-..+.+.+. .|.+--.....=.+..+-.+|++..
T Consensus 100 v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 568999999999998876 4888777777754 4555445555667888888888654
No 307
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=36.55 E-value=59 Score=23.71 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=41.1
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCe--eEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqA--m~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+.+||..+|-++|..+.. .+|.- ..+.+.+..+.+=-.....=.+..+-.+||+..=
T Consensus 128 v~NLp~~~t~~~L~~~F~-~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln 186 (205)
T 3tyt_A 128 FFNAPLEVTEENFFEICD-ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN 186 (205)
T ss_dssp EEEECTTCCHHHHHHHHH-HHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 568999999999988775 48876 6777776654322444456678899999998644
No 308
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.33 E-value=58 Score=20.57 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=36.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCC-eeEEEEEcCC-C--ceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGS-AMRISILKLD-G--TSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~Gq-Am~l~V~k~D-g--s~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|..... .+|. -..+.+.+.| . .+--.....=.+..+-.+||+.
T Consensus 12 ~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 3568999999999987765 5676 7777776322 2 2222233344567777888874
No 309
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=36.06 E-value=79 Score=20.29 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CHHHHHHhhhhhcC-CeeEEEEEcCCC-ceeeEEE
Q 033077 50 TLSDVDTLISLEMG-SAMRISILKLDG-TSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Iale~G-qAm~l~V~k~Dg-s~~~VvV 82 (128)
+.+++...|.-..| +.++|+|.|.++ ....+.|
T Consensus 36 ~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l 70 (95)
T 3id1_A 36 DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKL 70 (95)
T ss_dssp SHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence 57888888876555 899999999874 4344443
No 310
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=35.65 E-value=59 Score=20.49 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=27.6
Q ss_pred cCCccc--CCCC-CCCHHHHHHhhhhhcCCeeEEEEEcCCC
Q 033077 38 DDPILA--DVPK-KPTLSDVDTLISLEMGSAMRISILKLDG 75 (128)
Q Consensus 38 ~DplL~--DlP~-~vT~~Ev~s~Iale~GqAm~l~V~k~Dg 75 (128)
.|-+++ +.|- ..+.+++...|. ..|+.++|+|.|.+.
T Consensus 52 GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 52 GDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 566654 4443 247899998887 789999999998664
No 311
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=35.62 E-value=39 Score=22.54 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=31.2
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.+ ...+.+++...|.-..|+.++|.|.|.+ ..+.+.+
T Consensus 55 GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~~ 101 (127)
T 1b8q_A 55 GDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP-EGFTTHL 101 (127)
T ss_dssp TTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCC-CSEEECC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCC-ceEEEEE
Confidence 566665 332 3346899999998778999999999954 4555544
No 312
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.46 E-value=1.5e+02 Score=22.67 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcCCcccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE-eCCCcHHHHHHHHHHHHhhhhh
Q 033077 26 KARLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV-MNSATVKDLKLAIKKKVNDMEQ 104 (128)
Q Consensus 26 ~~~~~~~L~~ll~DplL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV-~~~ATV~dLKkAI~~~~~~~~~ 104 (128)
|..+-+.|..+|.-.=+-=.|...|+++|...|.=..+ .+...+ .++.++.|.| .-+-|..||..-|...++....
T Consensus 114 m~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~-~v~~r~--~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~ 190 (216)
T 3j21_A 114 MPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKK-TVRIQL--KNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIG 190 (216)
T ss_dssp HHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTC-EEEEEE--ETTTEEECCCEESSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHh-hceeec--CCCCEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 55555557777632111115566666788888877776 555544 4567999999 4468999999999988877654
Q ss_pred hcCCceeeeccccccce
Q 033077 105 SNLGHRHISWQVFIAPS 121 (128)
Q Consensus 105 r~~g~~~ISWk~VW~~f 121 (128)
. ..=.|+||++-|
T Consensus 191 ~----~p~~~k~Iksi~ 203 (216)
T 3j21_A 191 K----LERGESQVKSVY 203 (216)
T ss_dssp S----CCCSSCSEEEEE
T ss_pred h----ccccccceEEEE
Confidence 2 222588776554
No 313
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=35.17 E-value=87 Score=19.92 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
...+|.|+=-||+.+.-....+.||.+|..-|+.
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~ 39 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS 39 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 3467888888999998888999999999998886
No 314
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.10 E-value=51 Score=21.16 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=36.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCC--c--eeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--T--SFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg--s--~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-++|..... .+|.-..+.|.+... . -|..|.- .+..+-.+||
T Consensus 29 ~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f--~~~~~a~~A~ 84 (114)
T 2cq4_A 29 FCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEF--CEIQSVPLAI 84 (114)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEE--SCGGGHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEe--CcHHHHHHHH
Confidence 4668999999999988775 689888888876543 2 2443333 4556677788
No 315
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=34.94 E-value=62 Score=25.10 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.2
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEEe
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
+..++...|.- ..|+.++|+|.|.||..+.+.|.
T Consensus 276 ~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~ 310 (324)
T 1y8t_A 276 SADALVAAVRSKAPGATVALTFQDPSGGSRTVQVT 310 (324)
T ss_dssp SHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEEE
Confidence 34778877754 57999999999977777777763
No 316
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=34.72 E-value=44 Score=20.59 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.| .+.+..++...|.- .+..++|+|.|. |..+.+.+
T Consensus 45 GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~-g~~~~~~v 90 (92)
T 3cyy_A 45 GDVVLKINGTVTENMSLTDAKTLIER-SKGKLKMVVQRD-ERATLLNV 90 (92)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEC----------
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeC-CceeeeeC
Confidence 555554 333 24478899888765 355999999985 44455544
No 317
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=34.65 E-value=80 Score=21.30 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=38.1
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+.+||.++|-++|..... .+|.-..+.|.+. ...|..| .=.+..+-.+||+..
T Consensus 78 V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~afV--~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFG-YYGPLRSVWVARN-PPGFAFV--EFEDPRDAADAVREL 130 (150)
T ss_dssp EESCCSCCSCHHHHHHHH-HHSCEEEEEECSS-SCSEEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hhCCEEEEEEeeC-CCcEEEE--EECCHHHHHHHHHHc
Confidence 557999999999988776 6898888888775 2334433 335677778888753
No 318
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.50 E-value=1.1e+02 Score=21.03 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=39.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..+.. .+|.-..+.|.+. .-|..| .=.+..+-.+||+..
T Consensus 35 fVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~--kG~AFV--eF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 35 HIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG--KNQAFI--EMNTEEAANTMVNYY 87 (119)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG--GTEEEE--ECSCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC--CCEEEE--EECCHHHHHHHHHHh
Confidence 3468999999999987664 7999999999875 334444 345677778888753
No 319
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=34.15 E-value=1.2e+02 Score=22.20 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|..... .+|.-..+.|.+.. .-+ ....=.+..+-.+||+..
T Consensus 211 ~v~nl~~~~~~~~l~~~F~-~~G~i~~v~~~~~~-~g~--afV~f~~~~~A~~A~~~l 264 (282)
T 3pgw_A 211 FLTNLPEETNELMLSMLFN-QFPGFKEVRLVPGR-HDI--AFVEFDNEVQAGAARDAL 264 (282)
T ss_pred EEeCCCCcCCHHHHHHHHH-hcCCeEEEEEecCC-CcE--EEEEeCCHHHHHHHHHHc
Confidence 4568999999999998876 68998888888655 112 223446777888888753
No 320
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=33.93 E-value=29 Score=23.74 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC--CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~--Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|.++|..... .+|.-..+.+.+. .+.+--.....=.+..+-.+||+.
T Consensus 51 ~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 51 KVDNLTYRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp EEECCCSSCHHHHHHHHHG-GGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3568999999999988776 5888777777654 233222223334577777888764
No 321
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=33.83 E-value=27 Score=21.63 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=34.7
Q ss_pred cccCCCCCCCHHHHHH---hhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s---~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++.+||.++|-++|.. .+--.+|.-..+.+.+. |.+-......=.+..+-.+|++.
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHH
Confidence 3568999999999983 33346787777766641 11111122233577788888874
No 322
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=33.77 E-value=50 Score=23.12 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcH
Q 033077 44 DVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88 (128)
Q Consensus 44 DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV 88 (128)
+-|+..|.+|+-..+.+..++-.+=-|.+.|+..+=|+++-+..|
T Consensus 22 ~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~l 66 (152)
T 3op6_A 22 AHSPAYTAQEIAASAHVSGKQLAKTVIIKMDGRLAMVVLPASDHI 66 (152)
T ss_dssp EECTTCCHHHHC----CCSSCCEEEEEEEETTEEEEEEEETTCCC
T ss_pred EcCCCCCHHHHHHHcCCChhheEEEEEEEECCeEEEEEECCCCeE
Confidence 457778999999999999999888888888887766667666554
No 323
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=33.77 E-value=86 Score=19.48 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=37.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|....+ .+|.-..+.+.+.-|- .. ..=.+..+-.+||+.
T Consensus 31 ~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~~~~g~--af--V~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIPHFATEADLIPLFQ-NFGFILDFKHYPEKGC--CF--IKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTSCCSEEEEETTTTE--EE--EECSSHHHHHHHHHH
T ss_pred EEcCCCcccCHHHHHHHHH-hCCCEEEEEEecCCCE--EE--EEECCHHHHHHHHHH
Confidence 3568999999999998775 6788888888764443 22 234567778888874
No 324
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.73 E-value=83 Score=20.91 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=38.8
Q ss_pred ccCCCC-CCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~-~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+..||. ++|-+||..+. -.+|.-..+.|.+.-| |..| .-++..+-.+||+..
T Consensus 20 V~nLp~~~~te~dL~~lF-~~fG~V~~v~i~~~kg--~aFV--ef~~~~~A~~Ai~~l 72 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLV-EPFGVISNHLILNKIN--EAFI--EMATTEDAQAAVDYY 72 (102)
T ss_dssp EESCCCSSSHHHHHHTTT-GGGSCEEEEEECSSSS--CEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCcCCHHHHHHHH-HhcCCEEEEEEEcCCC--EEEE--EECCHHHHHHHHHHH
Confidence 468999 99999988655 4899999999987544 4433 345667778888764
No 325
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=33.64 E-value=84 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=28.2
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
+-+.+.|-..||++..|.|+.+.|+.||=+.+.
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~ 62 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLM 62 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHH
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHH
Confidence 567788888999999999999999999965443
No 326
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.41 E-value=36 Score=22.20 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=33.4
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCe-eEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSA-MRISILKL-DGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqA-m~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|.....- +|.- ..+.|.+. +|.+--.....=++..+.++||+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred EEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 45679999999998877653 4655 33444332 332222233344567777788765
No 327
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=33.15 E-value=1.2e+02 Score=21.40 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=36.3
Q ss_pred hhhhhcCCeeEEEEEcCCCcee------eEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 57 LISLEMGSAMRISILKLDGTSF------DVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 57 ~Iale~GqAm~l~V~k~Dgs~~------~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.|.-.+-..+=|.|.|..++.+ ..-||.+.||.++...|++.+.+.
T Consensus 22 ~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~ 73 (118)
T 3rui_B 22 RIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLP 73 (118)
T ss_dssp HHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcC
Confidence 3445667788888888877665 346899999999999999998664
No 328
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=32.95 E-value=1.2e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=30.4
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+-.-+||-++---..-|.+.|+.++||.+|=+|.....
T Consensus 6 ~~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~ 43 (82)
T 3goe_A 6 HHKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEV 43 (82)
T ss_dssp CCCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHc
Confidence 34567887777777889999999999999988776654
No 329
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=32.77 E-value=96 Score=19.72 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=35.5
Q ss_pred cccCCCCC-CCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKK-PTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~-vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.+ +|-++|..... .+|.-..+.+.| .|..| .=.+..+-.+||+.
T Consensus 31 ~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i~~----g~afV--~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 31 FIGNLNTALVKKSDVETIFS-KYGRVAGCSVHK----GYAFV--QYSNERHARAAVLG 81 (110)
T ss_dssp EECSCCCSSCCHHHHHHHHG-GGSCCSEEEEET----TEEEE--ECSSSHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHHHHHH-hCCCeEEEEEeC----CEEEE--EECCHHHHHHHHHH
Confidence 46689999 99999998876 688877777733 23333 33566677788864
No 330
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=32.61 E-value=42 Score=22.38 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.8
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhc-CCeeEEEEEcCCCce
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEM-GSAMRISILKLDGTS 77 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~-GqAm~l~V~k~Dgs~ 77 (128)
.|-+++ +.| .+.|.+|+..+|.-.. |+.++|.|.|.....
T Consensus 67 GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~ 110 (122)
T 1v5q_A 67 GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAES 110 (122)
T ss_dssp TCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCCS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCccc
Confidence 566654 333 2356899999998776 999999999976543
No 331
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.47 E-value=35 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=31.6
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDV 80 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~V 80 (128)
.|-+|+ +.| .+.|.+|+..+|. ..|..++|.|.|......+.
T Consensus 64 GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~~~~~ 108 (117)
T 1v62_A 64 GDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQSQRPL 108 (117)
T ss_dssp TCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTTBCCSS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCcCc
Confidence 676665 333 2468999999998 68999999999987765443
No 332
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=32.46 E-value=54 Score=22.77 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=28.0
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhh-hhcCCeeEEEEEcCCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLIS-LEMGSAMRISILKLDG 75 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Ia-le~GqAm~l~V~k~Dg 75 (128)
.|-+|+ +.+ ...|.+|+...|. ...|+.++|.|.|.+.
T Consensus 53 GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 53 GDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 454444 333 4578899999998 4569999999999764
No 333
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=32.21 E-value=1.1e+02 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=30.7
Q ss_pred CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 64 SAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 64 qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+-+.+.|--.||++-.|.|..+.|+.|+-+.+..++
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~ 68 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKT 68 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHH
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHh
Confidence 456788889999999999999999999987776655
No 334
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=32.03 E-value=1.3e+02 Score=20.88 Aligned_cols=47 Identities=11% Similarity=0.241 Sum_probs=36.1
Q ss_pred ccCCCC-CCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcH
Q 033077 42 LADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATV 88 (128)
Q Consensus 42 L~DlP~-~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV 88 (128)
.-.-|. ..|.+|+-..+.+..++-.+--+.+.|+..+-|+++-+..|
T Consensus 24 ~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~l 71 (158)
T 2z0x_A 24 VVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGEKGAYLFLVSGKNRL 71 (158)
T ss_dssp EEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEESSSEEEEEEETTCCB
T ss_pred EEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeCCcEEEEEEECchhh
Confidence 445674 77999999999999999888778888877666666665443
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.00 E-value=83 Score=20.95 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=35.5
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
++.+||.++|-++|.....=- ....+.|.+. +|.+--.....=++..+..+||+
T Consensus 20 ~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 20 SVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp EEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 456899999999999877632 3455666543 24332333344566788999984
No 336
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=31.92 E-value=41 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCHHHHHHhhhhhcCCeeEEEEEcCCC-ceeeEEEeC
Q 033077 49 PTLSDVDTLISLEMGSAMRISILKLDG-TSFDVAVMN 84 (128)
Q Consensus 49 vT~~Ev~s~Iale~GqAm~l~V~k~Dg-s~~~VvV~~ 84 (128)
.+.+++...|+-..|+.++|+|.|.++ ..+.|.|..
T Consensus 145 ~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p 181 (209)
T 3rle_A 145 NESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 181 (209)
T ss_dssp CSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECC
T ss_pred CCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEe
Confidence 456788888877789999999999876 568888743
No 337
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=31.82 E-value=1.1e+02 Score=20.51 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=38.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|.....- +|. +++ .+.++.+-......=.+..+-.+|++..
T Consensus 103 ~v~nlp~~~t~~~l~~~F~~-~g~-v~~--~~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 103 LAKNLSFNITEDELKEVFED-ALE-IRL--VSQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EEESCCSSCCHHHHHHHCTT-CSE-EEE--ECSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cCe-EEE--ecCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 35579999999999987763 563 332 2666665555556667888999998864
No 338
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=31.74 E-value=42 Score=28.88 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=35.5
Q ss_pred hhcCCeeEEEEEcCCC--ceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceee
Q 033077 60 LEMGSAMRISILKLDG--TSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHI 112 (128)
Q Consensus 60 le~GqAm~l~V~k~Dg--s~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~I 112 (128)
+|.=..|+|+.+-... ..+.+.||+++||.||-.++++.+.. ++.+.++|
T Consensus 334 lE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~---~~~~~~~l 385 (530)
T 2ylm_A 334 FENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVEL---GEKASGKL 385 (530)
T ss_dssp HHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCC---CTTCCCCE
T ss_pred HhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCC---CcCCcccE
Confidence 4455678888773222 36788889999999999999988765 23344555
No 339
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=31.46 E-value=69 Score=20.03 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 48 KPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 48 ~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
..+.+++...|.-. |+.++|.|.|.+..
T Consensus 64 ~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 64 GLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 34688999888765 99999999997764
No 340
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=30.87 E-value=37 Score=23.91 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=35.6
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-CceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs~~~VvV~~~ATV~dLKkAI 95 (128)
++..||.++|-+||..... .+| ...+.|.+.. |.+--.....=+|..+.++||
T Consensus 50 fV~nLp~~~te~dL~~~F~-~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFS-PLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHC-SCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 5678999999999998876 467 5677766542 322112222346778888888
No 341
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=30.85 E-value=78 Score=22.16 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=34.6
Q ss_pred hhhhhcCC-eeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 57 LISLEMGS-AMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 57 ~Iale~Gq-Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
.+.+...+ ..+|.|+=-||+.+.-....+.||.+|..-|+.+.
T Consensus 43 ~~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~ 86 (127)
T 1s3s_G 43 SILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR 86 (127)
T ss_dssp HSCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHC
T ss_pred CccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhC
Confidence 34455544 57888888899999888899999999999998874
No 342
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=30.82 E-value=1.3e+02 Score=20.54 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=34.3
Q ss_pred cCCCCC-CCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcH
Q 033077 43 ADVPKK-PTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATV 88 (128)
Q Consensus 43 ~DlP~~-vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV 88 (128)
-.-|.. .|.+|+-..+.+..++-.+--+.+. ++..+-|+++-+..|
T Consensus 19 ~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~l 66 (152)
T 1wdv_A 19 LIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRL 66 (152)
T ss_dssp EECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCB
T ss_pred EEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhh
Confidence 345667 8999999999999999777777774 666666666665443
No 343
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=30.57 E-value=1.6e+02 Score=21.55 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=43.5
Q ss_pred cccCCCCCC-CHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 41 ILADVPKKP-TLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 41 lL~DlP~~v-T~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
++..||.++ |.++|..... .+|.-..+.|.+. +|.+-......=.+..+-.+|++..=
T Consensus 188 ~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 188 CVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp EEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 456799997 7888888776 7898878887774 55555566667788888899987543
No 344
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.35 E-value=74 Score=21.61 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
+...||.++|-++|..+.. .+|.-..+.|.+. .-|..|- =++..+-.+||+..
T Consensus 20 fV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~--kGfaFVe--F~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG--KNQAFIE--MNTEEAANTMVNYY 72 (105)
T ss_dssp EECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT--TTEEEEE--ESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCEEEEE--ECCHHHHHHHHHHh
Confidence 3568999999999987665 7999999999985 3344443 35677788888754
No 345
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=30.35 E-value=1.5e+02 Score=21.35 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHhhhcCCcccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcC-CCceeeEEEeCCCcH
Q 033077 29 LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFDVAVMNSATV 88 (128)
Q Consensus 29 ~~~~L~~ll~DplL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~-Dgs~~~VvV~~~ATV 88 (128)
+...|.+.==+-..-+-|+..|.+|+-..+.+..++-.+--|.+. ++..+-|+++.+..|
T Consensus 19 v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~l 79 (180)
T 1vjf_A 19 LFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTI 79 (180)
T ss_dssp HHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCC
T ss_pred HHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCcc
Confidence 344444442122224567788999999999999999888888887 444555555655443
No 346
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.23 E-value=51 Score=20.83 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
.|-+++ +.| ...+..++...|. ..|+.++|.|.|.+..
T Consensus 58 GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~~ 98 (103)
T 1wfv_A 58 GDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGTGS 98 (103)
T ss_dssp TCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTTCS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCCC
Confidence 565554 333 2356788888887 7799999999997654
No 347
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=30.17 E-value=56 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=25.6
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhh-hhcCCeeEEEEEcCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLIS-LEMGSAMRISILKLD 74 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Ia-le~GqAm~l~V~k~D 74 (128)
.|-+++ +.| ...+.+++...|. ...|+.++|.|.|.+
T Consensus 46 GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 46 GDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 455543 333 2345788888887 567999999999854
No 348
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=29.81 E-value=46 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=32.0
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhh---cCCeeEEEEEcCCCceeeEE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLE---MGSAMRISILKLDGTSFDVA 81 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale---~GqAm~l~V~k~Dgs~~~Vv 81 (128)
.|.+|+ +.| ...+.+|+...|.-. .|+.++|+|.|.....+++.
T Consensus 65 GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~~~~~~~ 114 (118)
T 1v6b_A 65 GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114 (118)
T ss_dssp TCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSCCCCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCcccccce
Confidence 677665 444 355788888888643 49999999999887766544
No 349
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.06 E-value=53 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.| .+.+.+++...|.- .|+.++|.|.|.++..+.+.+
T Consensus 51 GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~~~~~~~ 97 (102)
T 2d90_A 51 NDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEAESIYSLS 97 (102)
T ss_dssp TCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTCCCCCCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCCceEEEec
Confidence 454443 333 23457888887754 599999999998887665544
No 350
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=29.00 E-value=51 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=28.6
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
.|.+|+ +.| ...+.+|+..+|.-..| .++|.|.|...+
T Consensus 47 GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~~ 87 (88)
T 1kwa_A 47 GDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYRE 87 (88)
T ss_dssp TCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcCC
Confidence 677665 333 23478999999987777 999999997765
No 351
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=28.88 E-value=69 Score=22.16 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=27.8
Q ss_pred cCCccc--CCCC-CCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEE
Q 033077 38 DDPILA--DVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 38 ~DplL~--DlP~-~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV 82 (128)
.|-+++ +.|- +.+.+++...|.-..|+.++|.|.|.+. .+.|.+
T Consensus 85 GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~-~~~v~~ 131 (139)
T 2vz5_A 85 GDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSL-QKAVQQ 131 (139)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC--------
T ss_pred CCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCE-EEEEEE
Confidence 566654 4432 2478999999887789999999999654 444444
No 352
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=28.53 E-value=62 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.7
Q ss_pred eeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 77 SFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 77 ~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
-|+|.+..+.|..|++++|++...
T Consensus 78 gF~V~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 78 GYSVDVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCHHHHHHHHHHHHh
Confidence 578999999999999999998875
No 353
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=28.42 E-value=1.7e+02 Score=21.16 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcCCcccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCC-ceeeEEEeCCCcH
Q 033077 28 RLHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG-TSFDVAVMNSATV 88 (128)
Q Consensus 28 ~~~~~L~~ll~DplL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg-s~~~VvV~~~ATV 88 (128)
.+...|.+.==+-..-+-|...|.+|+-..+.+..++-.+--|.+.++ ..+-|+++-+..|
T Consensus 23 ~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~l 84 (181)
T 1vki_A 23 ELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVV 84 (181)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCB
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCcc
Confidence 344455554312222366778899999999999999988888888744 4555555655443
No 354
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=28.20 E-value=71 Score=19.92 Aligned_cols=53 Identities=9% Similarity=0.280 Sum_probs=35.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC-Cc--eeeEEEeCCCcHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GT--SFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D-gs--~~~VvV~~~ATV~dLKkAI~ 96 (128)
++..||.++|-++|..... .+|.-..+.+.+.. |. .|..+.- .+..+-.+||+
T Consensus 13 ~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f--~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDRTGVSKGYGFVSF--YNDVDVQKIVE 68 (102)
T ss_dssp EEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEE--SSCCCHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCccceEEEEE--CCHHHHHHHHh
Confidence 3568999999999998774 57888788877653 22 2444433 33444567776
No 355
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=28.11 E-value=1.6e+02 Score=20.75 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHhhh-hhcCCeeEEEEEcCCCceee--EEE-eCCCcHHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLIS-LEMGSAMRISILKLDGTSFD--VAV-MNSATVKDLKLAIKKK 98 (128)
Q Consensus 45 lP~~vT~~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~--VvV-~~~ATV~dLKkAI~~~ 98 (128)
=|+.|++-|+-..|+ ++-..+..++|.-.|-.+.. |.| -.+--..++++||+..
T Consensus 15 KPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~ 72 (97)
T 2raq_A 15 KPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESY 72 (97)
T ss_dssp CCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHc
Confidence 489999999987775 66778999999999986654 444 4458899999999863
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.08 E-value=33 Score=21.02 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=29.8
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeC
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMN 84 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~ 84 (128)
++..||.++|-++|....+ .+|.-..+.|.+. ..-|..|--.
T Consensus 9 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-~~g~afV~f~ 50 (88)
T 1wf0_A 9 FVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-FRAFAFVTFA 50 (88)
T ss_dssp EEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-CCSCCEEECS
T ss_pred EEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-CCCEEEEEEC
Confidence 3568999999999998776 7888777777653 3334444433
No 357
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=27.98 E-value=1.3e+02 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=35.2
Q ss_pred cCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH-hhhhhhcCCceeeeccccc
Q 033077 62 MGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKV-NDMEQSNLGHRHISWQVFI 118 (128)
Q Consensus 62 ~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~-~~~~~r~~g~~~ISWk~VW 118 (128)
.|-.+.+.|-=-++.+|+++|-...+=.=||+|..-.- +..+.. .--..|++.+|.
T Consensus 49 ~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ka~g~~~gs~~p~k-~~vG~it~~qi~ 105 (140)
T 1mms_A 49 AGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKR-KIVGKVTRKQIE 105 (140)
T ss_dssp CSSEEEEEEEECTTSCEEEEECCCCHHHHHHHHHTCSSCCSSTTT-SCCEEECHHHHH
T ss_pred CCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCCCCCCCCCCC-eEeeeEcHHHHH
Confidence 58888877777888899999955555555777765322 222221 234677777663
No 358
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=27.19 E-value=70 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=24.4
Q ss_pred CHHHHHHhhh-hhcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLIS-LEMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+.+++...|. ...|+.++|+|.|. |..+.+.|
T Consensus 296 ~~~dl~~~l~~~~~g~~v~l~v~R~-g~~~~~~v 328 (348)
T 3qo6_A 296 NGSDLYRILDQCKVGDEVTVEVLRG-DHKEKISV 328 (348)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEEECS-SSEEEEEE
T ss_pred CHHHHHHHHHhCCCcCEEEEEEEEC-CEEEEEEE
Confidence 4588888884 45699999999995 56666665
No 359
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.06 E-value=1.4e+02 Score=19.62 Aligned_cols=53 Identities=6% Similarity=0.112 Sum_probs=38.9
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..+.. .+|.-..+.+.+. .-|..| .=.+..+-.+||+..
T Consensus 19 ~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~--kg~aFV--ef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 19 HVRGLCESVVEADLVEALE-KFGTICYVMMMPF--KRQALV--EFENIDSAKECVTFA 71 (104)
T ss_dssp EEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT--TTEEEE--EESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC--CCEEEE--EECCHHHHHHHHHHh
Confidence 3467999999999987665 7999888888874 234443 335678888888754
No 360
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=26.49 E-value=1.9e+02 Score=21.23 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++.+||.++|-++|..... .+|.-..+.+.|.-|-. . ..=++..+-.+|++..
T Consensus 26 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~kg~a--f--V~f~~~~~A~~A~~~l 78 (261)
T 3sde_A 26 FVGNLPTDITEEDFKRLFE-RYGEPSEVFINRDRGFG--F--IRLESRTLAEIAKAEL 78 (261)
T ss_dssp EEESCCTTCCHHHHHHHTG-GGCCCSEEEEETTTTEE--E--EECSSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCcEE--E--EEECCHHHHHHHHHHc
Confidence 4568999999999998875 68998888887764432 2 2446777778888743
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=26.43 E-value=87 Score=18.69 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=32.7
Q ss_pred cccCCCCCCCHHHHHHhhhhh---cC-------CeeEEEEEcCCCceeeEEEeCCCcHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLE---MG-------SAMRISILKLDGTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale---~G-------qAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI 95 (128)
++.+||.++|-++|.....-- .| .-..+.+.+.-| |..+- =.+..+-.+|+
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg--~afV~--f~~~~~a~~A~ 70 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLE--FRSVDETTQAM 70 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS--EEEEE--ESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc--EEEEE--cCCHHHHHHHH
Confidence 356899999999998776532 16 666677765532 33332 34566667776
No 362
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=26.33 E-value=75 Score=19.69 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCceeeEEEeCCCcHHHHHHHH
Q 033077 65 AMRISILKLDGTSFDVAVMNSATVKDLKLAI 95 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI 95 (128)
.|+|+|.=.. ....+.++..+||.||.+.+
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l 33 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL 33 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh
Confidence 3777776332 23456778889999998876
No 363
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=26.28 E-value=93 Score=19.82 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=28.1
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
.|-+++ +.| ...+.+++...|. ..|+.++|+|.|....
T Consensus 64 GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~ 104 (107)
T 3qe1_A 64 GDRILEVNGVNVEGATHKQVVDLIR-AGEKELILTVLSVESE 104 (107)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-HCSSEEEEEEECSSCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCCC
Confidence 566655 333 3468899999887 5699999999997653
No 364
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=26.22 E-value=73 Score=19.89 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceee
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFD 79 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~ 79 (128)
.|-+++ +.| ...+..++...+. ..|+.++|.|.|.+...+.
T Consensus 51 GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~~~~e 94 (95)
T 2vwr_A 51 NDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGKPEIE 94 (95)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESCSCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCcCccc
Confidence 566654 333 2456777777765 4699999999998776554
No 365
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=25.78 E-value=87 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=20.2
Q ss_pred CceeeEEEe--CCCcHHHHHHHHHHHH
Q 033077 75 GTSFDVAVM--NSATVKDLKLAIKKKV 99 (128)
Q Consensus 75 gs~~~VvV~--~~ATV~dLKkAI~~~~ 99 (128)
.....+.++ ..+||.||...+...+
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 456777777 6799999999988765
No 366
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=25.60 E-value=98 Score=19.04 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=26.5
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDG 75 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg 75 (128)
.|-+++ +.| ...+.+++...|.-. |+.++|.|.|.+.
T Consensus 49 GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 49 QDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 455554 333 345668999988865 9999999998764
No 367
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.60 E-value=44 Score=21.51 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=28.8
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCcee
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSF 78 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~ 78 (128)
.|-+++ +.| .+.+.+++..+|.-. |+.++|.|.|.+...+
T Consensus 50 GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~~ 92 (103)
T 1v5l_A 50 GDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETRLW 92 (103)
T ss_dssp TCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTTTS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeEcc
Confidence 455554 333 235689999998876 9999999999876544
No 368
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=25.59 E-value=83 Score=21.39 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.3
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhh-cCCeeEEEEEcCCCce
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLE-MGSAMRISILKLDGTS 77 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale-~GqAm~l~V~k~Dgs~ 77 (128)
.|-+|+ +.| ...|.+|+...|.-. .|+.++|.|.|.+.++
T Consensus 87 GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~s 130 (131)
T 1wfg_A 87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSS 130 (131)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECSCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCCCC
Confidence 676665 444 346889999999876 7899999999977653
No 369
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=25.47 E-value=1.4e+02 Score=19.27 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.4
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
...||.++|-++|....+ .+|.-..+.+.| .|..| .=.+..+-.+||+..
T Consensus 36 V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~k----g~afV--~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 36 VRPFPLDVQESELNEIFG-PFGPMKEVKILN----GFAFV--EFEEAESAAKAIEEV 85 (108)
T ss_dssp ECSSCTTCCHHHHHHHHT-TTSCCCEEEEET----TEEEE--ECSSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEEC----CEEEE--EECCHHHHHHHHHHc
Confidence 568999999999998875 688887888773 23333 345677788888743
No 370
>4g6u_B EC869 CDII; beta-augmentation, DNAse, toxin, immunity; 2.35A {Escherichia coli O157}
Probab=25.13 E-value=58 Score=25.06 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=22.9
Q ss_pred ceeeEEEeCCCcHHHHHHHHHHHHhh
Q 033077 76 TSFDVAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 76 s~~~VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
...+|++|-++|..||=+||+.+|+.
T Consensus 139 ~~d~Iilp~d~s~eElGaAlr~Afsr 164 (177)
T 4g6u_B 139 ESDYVVLPADSSPTEIGSGLRLALSR 164 (177)
T ss_dssp GGGSEEEETTCCHHHHHHHHHHHHTC
T ss_pred CCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 34489999999999999999999965
No 371
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=25.08 E-value=88 Score=24.66 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.4
Q ss_pred EEEEEcCCCceeeEEEeCCCcHHHHHHHHH
Q 033077 67 RISILKLDGTSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 67 ~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~ 96 (128)
-|.|-..||++..|.|+.+.|+.||=+.+.
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~ 39 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLV 39 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHH
Confidence 467777999999999999999999965543
No 372
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=25.01 E-value=1e+02 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=24.5
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+..++...|.- ..|+.++|+|.| +|..+.+.|
T Consensus 278 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 310 (318)
T 1te0_A 278 SALETMDQVAEIRPGSVIPVVVMR-DDKQLTLQV 310 (318)
T ss_dssp CHHHHHHHHHTSCTTCEEEEEEES-SSCEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEE-CCEEEEEEE
Confidence 34788888864 689999999999 466666665
No 373
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=24.82 E-value=58 Score=20.44 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=32.7
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCC
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNS 85 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ 85 (128)
++..||.++|-++|....+ .+|.-..+.|.+ |..-|..|--.+
T Consensus 15 ~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~-~srGfaFV~F~~ 57 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFC-QYGEVVDVFIPK-PFRAFAFVTFAD 57 (89)
T ss_dssp EEESCCTTCCHHHHHHHHT-TTSCEEEEECCS-SCCSEEEEEESC
T ss_pred EEeCCCCCCCHHHHHHHHh-ccCCEEEEEEee-CCCCEEEEEECC
Confidence 3568999999999998887 689988888887 334466665544
No 374
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=24.80 E-value=69 Score=19.43 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=34.6
Q ss_pred ccCCCCCCCHHHHHHhhhhhcCCeeEEEEEcCC--C--ceeeEEEeCCCcHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--G--TSFDVAVMNSATVKDLKLAIK 96 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s~Iale~GqAm~l~V~k~D--g--s~~~VvV~~~ATV~dLKkAI~ 96 (128)
+.+||.++|-++|....+ .+|.-..+.+.+.. | ..+..+.-.+.. -.+||+
T Consensus 6 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~---a~~a~~ 60 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES---VSEAIA 60 (90)
T ss_dssp EEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH---HHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH---HHHHHH
Confidence 467999999999988776 58888788887653 3 235555444433 455665
No 375
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=24.66 E-value=61 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.9
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCce
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTS 77 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~ 77 (128)
.|-+++ +.| ...+..++...+.= .|+.++|.|.|.+.++
T Consensus 55 GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~~~ 96 (97)
T 2iwn_A 55 GDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRRGETS 96 (97)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEEECC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 566554 333 23467777766643 7999999999876543
No 376
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.51 E-value=68 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=26.7
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDG 75 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dg 75 (128)
.|-+++ +.| ...+++++...|.-. |+.++|+|.|.+.
T Consensus 67 GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 67 GDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp TCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred CCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 566554 333 234669999999877 9999999998543
No 377
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=24.14 E-value=82 Score=22.28 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=40.3
Q ss_pred CCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccccccc
Q 033077 63 GSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFIAP 120 (128)
Q Consensus 63 GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~VW~~ 120 (128)
|..=.+.|--..|-+|.|.||-+--+.--|+||+|.-.-..-.--..-+||=--||.+
T Consensus 34 gkremviisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcvwnn 91 (104)
T 3chb_D 34 GKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNN 91 (104)
T ss_dssp TTCCEEEEECTTCCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CceeEEEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheeeecC
Confidence 5555566677789999999999999999999999865332111122345666667765
No 378
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=24.07 E-value=1.7e+02 Score=19.80 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=32.5
Q ss_pred hhhcCCeeEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHHHH
Q 033077 59 SLEMGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 59 ale~GqAm~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+-+.+..|+|.|+-.||. .+.+-|.++.++.-|..|.....
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~ 60 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM 60 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHH
Confidence 445678899999998995 88999999999887777765544
No 379
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=23.89 E-value=1.4e+02 Score=26.28 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=36.3
Q ss_pred hhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 59 SLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 59 ale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
++..+.-.-+.|-+.|-++..|.++.++|+.|+.++....|.
T Consensus 346 ~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (694)
T 3cf6_E 346 PIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLG 387 (694)
T ss_dssp CCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHT
T ss_pred CCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhC
Confidence 345555677899999999999999999999999999988884
No 380
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=23.85 E-value=1.2e+02 Score=21.53 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHhhh-hhcCCeeEEEEEcCCCceeeEEE---eCCCcHHHHHHHHHHH
Q 033077 45 VPKKPTLSDVDTLIS-LEMGSAMRISILKLDGTSFDVAV---MNSATVKDLKLAIKKK 98 (128)
Q Consensus 45 lP~~vT~~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~VvV---~~~ATV~dLKkAI~~~ 98 (128)
=|+.|++-|+-..|+ ++-..+..++|.-.|-.+..+.| -.+--..++++||+..
T Consensus 15 KPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~ 72 (100)
T 3bpd_A 15 KPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDM 72 (100)
T ss_dssp EESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHc
Confidence 379999999988776 56668999999999987765544 3457889999999853
No 381
>2gkp_A Hypothetical protein NMB0488; structural genomics, APC83854, PSI, PR structure initiative; HET: MSE; 1.35A {Neisseria meningitidis} SCOP: d.351.1.1
Probab=23.62 E-value=96 Score=23.51 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEeCCCcHHHHHHHHHHHHhh
Q 033077 80 VAVMNSATVKDLKLAIKKKVND 101 (128)
Q Consensus 80 VvV~~~ATV~dLKkAI~~~~~~ 101 (128)
|++|-++|..||=+||+.+|+.
T Consensus 144 iilp~d~s~eEiGaAlr~Afsr 165 (167)
T 2gkp_A 144 VILSLDNSPEEIGAGLKLALSR 165 (167)
T ss_dssp EEEETTSCHHHHHHHHHHHHHT
T ss_pred eEeeCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999964
No 382
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=23.35 E-value=1.1e+02 Score=19.58 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=29.5
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhh-cCCeeEEEEEcCCCceee
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLE-MGSAMRISILKLDGTSFD 79 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale-~GqAm~l~V~k~Dgs~~~ 79 (128)
.|-+++ +.| .+.+.+++...|.-. .|+.++|.|.|.+....+
T Consensus 61 GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~ 106 (111)
T 2koj_A 61 GDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHP 106 (111)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCCCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCccc
Confidence 566654 333 235688999888764 599999999997765443
No 383
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=23.17 E-value=1.2e+02 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=25.7
Q ss_pred eEEEEEcCCCc--------eeeEEEeCCCcHHHHHHHHHH
Q 033077 66 MRISILKLDGT--------SFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 66 m~l~V~k~Dgs--------~~~VvV~~~ATV~dLKkAI~~ 97 (128)
|+|.|.|.|.. .+.|.++.+.||+|.=+.+..
T Consensus 6 ~~~~i~R~~~~~~~~~~~~~~~~~~~~~~tll~al~~~~~ 45 (243)
T 1kf6_B 6 LKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKD 45 (243)
T ss_dssp EEEEEEECCTTTCSSCEEEEEEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEEcCCCCCCCCeeEEEEEecCCCChHHHHHHHcCc
Confidence 79999998853 478888899999997766653
No 384
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=23.12 E-value=72 Score=22.10 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=34.1
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCee--EEEEEcC-CCce--eeEEEeCCCcHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAM--RISILKL-DGTS--FDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm--~l~V~k~-Dgs~--~~VvV~~~ATV~dLKkAI~~ 97 (128)
++..||.++|-++|.....= +| -. .+.|.+. +|.+ |..|. =++..+.++||+.
T Consensus 46 fVgnLp~~~te~dL~~~F~~-~~-i~~~~v~i~~d~~GrsrGfaFV~--F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSG-LE-IVPNGITLPVDPEGKITGEAFVQ--FASQELAEKALGK 103 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTT-SC-EEEEEEECCCCSSSSSCSEEEEE--ESSTTHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHhc-CC-ceeeEEEEEECCCCCCceEEEEE--ECCHHHHHHHHHH
Confidence 45789999999999987764 33 33 4555543 2432 44443 3455678889874
No 385
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=23.10 E-value=1.1e+02 Score=19.21 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=28.1
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCce
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTS 77 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~ 77 (128)
.|-+++ +.| .+.|.+++...|.-. |..++|.|.|.+...
T Consensus 61 GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~~ 102 (103)
T 2fcf_A 61 GDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQSIISTR 102 (103)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCCCCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEECCCCC
Confidence 565554 333 345689999988765 569999999987654
No 386
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.98 E-value=67 Score=24.18 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 74 DGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 74 Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
+...+...|...||=-|.|+||+..|.
T Consensus 86 ~~N~~vF~Vd~kAnK~qIK~AVEklf~ 112 (150)
T 4a17_R 86 DENTMVFYVHNRSTKPQIKSAFEKLYN 112 (150)
T ss_dssp HSSEEEEEECTTCCHHHHHHHHHHHHC
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 346777889999999999999999995
No 387
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=22.87 E-value=1e+02 Score=19.16 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=27.6
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCc
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGT 76 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs 76 (128)
.|-+++ +.| .+.+.+++...|.- .|+.++|.|.|.+..
T Consensus 54 GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 54 GDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDVSE 94 (97)
T ss_dssp TCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 565554 222 34578999998886 899999999996643
No 388
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=22.55 E-value=1e+02 Score=21.95 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhcCCcccCCCC--CCCHHHHHHhhhhhcC
Q 033077 26 KARLHSTLTALLDDPILADVPK--KPTLSDVDTLISLEMG 63 (128)
Q Consensus 26 ~~~~~~~L~~ll~DplL~DlP~--~vT~~Ev~s~Iale~G 63 (128)
+.++++.+ .-++.-+|+|+|. +||.|-+-..|.=...
T Consensus 76 k~~~~~vi-~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~ 114 (138)
T 2oba_A 76 KAIFKPIY-EQLDHNYLNDIPGLENPTSENLCRWIWQQLK 114 (138)
T ss_dssp HHHHHHHH-HHHTTSBGGGSTTCSSCCHHHHHHHHHHHHG
T ss_pred HHHHHHHH-HhCCCccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 44555544 5567789999884 6888777666654443
No 389
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=22.47 E-value=1e+02 Score=22.82 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHHhhhhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeeccccc
Q 033077 52 SDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVFI 118 (128)
Q Consensus 52 ~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~VW 118 (128)
+|++..-+=..|-.+++.|-=-++.+|++++....+-.=||+|..-.--.......--..||+.+|.
T Consensus 38 k~fN~~T~~~~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~Ka~g~~~gs~~p~~~~vG~it~~qi~ 104 (146)
T 3egv_B 38 KAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVL 104 (146)
T ss_dssp HHHHHHTTTSTTCEEEEEEEEETTSCEEEEECCCCHHHHC---------------------------
T ss_pred HHHHHHhcccCCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHHhhCCCCCCCCCCCeeeeeecHHHHH
Confidence 4555555666788888777667778899977555555556777653332211212224578887775
No 390
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=22.39 E-value=1.7e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.3
Q ss_pred CeeEEEEEcCCC---------ceeeEEEeCCCcHHHHHHHHHHH
Q 033077 64 SAMRISILKLDG---------TSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 64 qAm~l~V~k~Dg---------s~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
.-+++.|.|.|. ..+.|.++.+.||+|.=+.|...
T Consensus 3 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL~~l~~~~~~ 46 (241)
T 2bs2_B 3 RMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRET 46 (241)
T ss_dssp CEEEEEEEECCTTCTTCCCEEEEEEEECCTTCBHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEeCCCCChHHHHHHHhchh
Confidence 458999999775 34678888899999987777654
No 391
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=22.32 E-value=66 Score=22.09 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=28.4
Q ss_pred cCCccc--CCCCCCCHHHHHHhhh-hhcCCeeEEEEEcCCCceeeEEEe
Q 033077 38 DDPILA--DVPKKPTLSDVDTLIS-LEMGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 38 ~DplL~--DlP~~vT~~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
.|-+++ +.|- -+.+++...+. ...|+.++|+| |.+ . +.|.+.
T Consensus 45 GD~Il~InG~~v-~~~~dl~~~l~~~~~g~~v~l~V-R~g-~-~~v~l~ 89 (125)
T 2hga_A 45 GLVIESINGMPT-SNLTTYSAALKTISVGEVINITT-DQG-T-FHLKTG 89 (125)
T ss_dssp TCEEEEETTEEC-SSHHHHHHHHTTCCTTCEEEEEE-TTE-E-EEEECC
T ss_pred CCEEEEECCEEc-CCHHHHHHHHHhcCCCCEEEEEE-ECC-E-EEEEEe
Confidence 455554 2222 25688888887 57799999999 744 4 777664
No 392
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=22.22 E-value=1.3e+02 Score=28.86 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=35.0
Q ss_pred hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHh
Q 033077 60 LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 60 le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~ 100 (128)
++..+.+.|..+=-.|..+++.|+.++|+.++|+.|=....
T Consensus 46 ~~~~~~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~ 86 (1092)
T 2y3a_A 46 IASDGAISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVH 86 (1092)
T ss_dssp SSCCSEEEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGG
T ss_pred cCCCCceEEEEECCCceEEEEEecCcccHHHHHHHHHHHHH
Confidence 34668889999999999999999999999999998766543
No 393
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=21.95 E-value=1.3e+02 Score=18.26 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=24.5
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCC
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLD 74 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~D 74 (128)
.|-+++ +.| .+.+..++...|.-. |+.++|+|.|.+
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 86 (88)
T 2uzc_A 48 GDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES 86 (88)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 555554 333 345678888777644 999999999864
No 394
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.93 E-value=84 Score=21.00 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=36.2
Q ss_pred cccCCCCCCCHHHHHHhhhhhcCCeeE--------EEEEcCCCceeeEEEeCCCcHHHHHHHHHHH
Q 033077 41 ILADVPKKPTLSDVDTLISLEMGSAMR--------ISILKLDGTSFDVAVMNSATVKDLKLAIKKK 98 (128)
Q Consensus 41 lL~DlP~~vT~~Ev~s~Iale~GqAm~--------l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~ 98 (128)
++..||.++|-++|..... .+|.-.. +.+.+ .|.+--.....=.+..+-.+||+..
T Consensus 49 ~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 49 YVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp EEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence 3557999999999998775 5775322 33333 3433334444556788888898864
No 395
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=21.75 E-value=1.2e+02 Score=24.88 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.0
Q ss_pred eeEEEEEcCCCceeeEEE--eCCCcHHHHHHHHHHHH
Q 033077 65 AMRISILKLDGTSFDVAV--MNSATVKDLKLAIKKKV 99 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV--~~~ATV~dLKkAI~~~~ 99 (128)
+|.++|-=.+++..++.+ .+.+|+.|.++++++.-
T Consensus 231 g~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~ 267 (335)
T 1obf_O 231 GYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAAS 267 (335)
T ss_dssp EEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhh
Confidence 566777777887777666 67899999999998875
No 396
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=21.74 E-value=1.2e+02 Score=24.25 Aligned_cols=32 Identities=22% Similarity=0.611 Sum_probs=25.7
Q ss_pred CHHHHHHhhhh-hcCCeeEEEEEcCCCceeeEEE
Q 033077 50 TLSDVDTLISL-EMGSAMRISILKLDGTSFDVAV 82 (128)
Q Consensus 50 T~~Ev~s~Ial-e~GqAm~l~V~k~Dgs~~~VvV 82 (128)
+..++...|+- ..|+.++|+|.| ||..+.+.|
T Consensus 297 ~~~~l~~~l~~~~~g~~v~l~v~R-~g~~~~~~v 329 (345)
T 3stj_A 297 SFAELRSRIATTEPGTKVKLGLLR-NGKPLEVEV 329 (345)
T ss_dssp CHHHHHHHHHTSCTTCEEEEEEEE-TTEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEE-CCEEEEEEE
Confidence 56888888865 589999999999 566666666
No 397
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=21.66 E-value=1.2e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=28.8
Q ss_pred eeEEEEEcCCCceeeEEE--eCCCcHHHHHHHHHHHHh
Q 033077 65 AMRISILKLDGTSFDVAV--MNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV--~~~ATV~dLKkAI~~~~~ 100 (128)
+|.++|-=.+++..++.+ .+.+|+.|.+++++..-.
T Consensus 234 g~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~ 271 (346)
T 3h9e_O 234 GMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAK 271 (346)
T ss_dssp EEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhcc
Confidence 566777777888777766 778999999999988753
No 398
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.39 E-value=1.5e+02 Score=19.24 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred EEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHH
Q 033077 67 RISILKLDGTSFDVAVMNSATVKDLKLAIKKKV 99 (128)
Q Consensus 67 ~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~ 99 (128)
+++|.--||+.+ .+|+.+|+.|+-.+|-.-+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhh
Confidence 466666778664 5799999999988874433
No 399
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=20.96 E-value=1.7e+02 Score=21.45 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHhhh-hhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhhhhhcCCceeeecccc
Q 033077 52 SDVDTLIS-LEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWQVF 117 (128)
Q Consensus 52 ~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~~~r~~g~~~ISWk~V 117 (128)
+|++..-+ .+.|-.+.+.|-=-++.+|+++|-...+-.=||+|..-.--.......--..|++.+|
T Consensus 39 k~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaag~~~gs~~p~~~~vG~it~~qv 105 (145)
T 2ftc_G 39 KEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHV 105 (145)
T ss_pred HHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCCCCCCCCCCCcCcceEcHHHH
Confidence 34444433 2348888877777778899999955544455777765322111111122356777766
No 400
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=20.79 E-value=1.1e+02 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=28.2
Q ss_pred eeEEEEEcCCCceeeEEE--eCCCcHHHHHHHHHHHH
Q 033077 65 AMRISILKLDGTSFDVAV--MNSATVKDLKLAIKKKV 99 (128)
Q Consensus 65 Am~l~V~k~Dgs~~~VvV--~~~ATV~dLKkAI~~~~ 99 (128)
+|.++|-=.+++..+|.+ .+.+|+.|+++|+++.-
T Consensus 241 g~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~ 277 (345)
T 2b4r_O 241 GVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAA 277 (345)
T ss_dssp EEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhh
Confidence 566777777888777766 67899999999999875
No 401
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.76 E-value=1e+02 Score=20.01 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=30.9
Q ss_pred hh-cCCccc--CCC-CCCCHHHHHHhhhhh----cCCeeEEEEEcCCCc
Q 033077 36 LL-DDPILA--DVP-KKPTLSDVDTLISLE----MGSAMRISILKLDGT 76 (128)
Q Consensus 36 ll-~DplL~--DlP-~~vT~~Ev~s~Iale----~GqAm~l~V~k~Dgs 76 (128)
|. .|.+|+ +.| ...|.+|+..+|.-. .++.|++.|.|++..
T Consensus 51 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~~ 99 (103)
T 1ufx_A 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSG 99 (103)
T ss_dssp SCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcccC
Confidence 44 677775 343 346899999998776 789999999998754
No 402
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=20.73 E-value=1.2e+02 Score=19.40 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred cCCccc--CCC-CCCCHHHHHHhhhhhcCCeeEEEEEcCCCceeeEEEe
Q 033077 38 DDPILA--DVP-KKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVM 83 (128)
Q Consensus 38 ~DplL~--DlP-~~vT~~Ev~s~Iale~GqAm~l~V~k~Dgs~~~VvV~ 83 (128)
.|-+++ +.| .+.+..++...|.= .|+.++|.|.|.+...+....|
T Consensus 55 GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~~~p 102 (105)
T 2awx_A 55 GDKLLAVNSVSLEEVTHEEAVTALKN-TSDFVYLKVAKPTSMYISRHHH 102 (105)
T ss_dssp TCEEEEETTEECTTCBHHHHHHHHHS-CCSEEEEEEECCCC--------
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCCCCCccccc
Confidence 566654 333 23567777777653 4899999999988766655444
No 403
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=20.64 E-value=2e+02 Score=19.58 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=35.6
Q ss_pred ccCCCCCCCHHHHHH---hhhhhcCCeeEEEEEcCCCc-eeeEEEeCCCcHHHHHHHHHH
Q 033077 42 LADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGT-SFDVAVMNSATVKDLKLAIKK 97 (128)
Q Consensus 42 L~DlP~~vT~~Ev~s---~Iale~GqAm~l~V~k~Dgs-~~~VvV~~~ATV~dLKkAI~~ 97 (128)
...||.++|.+++.. .+=-.+|.-..+.+.+...+ -|..| .=.+..+-.+||+.
T Consensus 34 V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV--~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 34 ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYI--VFATQESAQAFVEA 91 (127)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEE--EESSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEE--EECCHHHHHHHHHH
Confidence 457999999998875 34457898888877652221 23333 33567777888864
No 404
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.51 E-value=65 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.0
Q ss_pred EeCCCcHHHHHHHHHHHHh
Q 033077 82 VMNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 82 V~~~ATV~dLKkAI~~~~~ 100 (128)
|+.+||..++|+|..+..-
T Consensus 17 v~~~as~~eIk~ayr~l~~ 35 (82)
T 2ej7_A 17 VPRQASSEAIKKAYRKLAL 35 (82)
T ss_dssp CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4678999999999988763
No 405
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.24 E-value=63 Score=21.37 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.5
Q ss_pred eeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 77 SFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 77 ~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
.+.+.||.+.+..||...|.++|...
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 67899999999999999999999753
No 406
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=20.20 E-value=2.3e+02 Score=19.86 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=42.3
Q ss_pred C-CCCCHHHHHHhhh-hhcCCeeEEEEEcCCCceeeEE--E-eCCCcHHHHHHHHHHH
Q 033077 46 P-KKPTLSDVDTLIS-LEMGSAMRISILKLDGTSFDVA--V-MNSATVKDLKLAIKKK 98 (128)
Q Consensus 46 P-~~vT~~Ev~s~Ia-le~GqAm~l~V~k~Dgs~~~Vv--V-~~~ATV~dLKkAI~~~ 98 (128)
| +.|++-|+-..|+ ++-..+..++|.--|-.+..+. | -.+--..++++||+..
T Consensus 14 P~h~P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~ 71 (96)
T 2x3d_A 14 PIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEE 71 (96)
T ss_dssp ESSSSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHc
Confidence 7 8999999988776 5666899999999998766544 4 4568899999999863
No 407
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=20.15 E-value=45 Score=27.23 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=24.8
Q ss_pred eEEEEEcCCCceeeEEE--eCCCcHHHHHHHHHHHHh
Q 033077 66 MRISILKLDGTSFDVAV--MNSATVKDLKLAIKKKVN 100 (128)
Q Consensus 66 m~l~V~k~Dgs~~~VvV--~~~ATV~dLKkAI~~~~~ 100 (128)
|.++|-=.+|+..++.+ .+.+|+.|++++++.+-.
T Consensus 227 ~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~ 263 (331)
T 2g82_O 227 MALRVPTATGSISDITALLKREVTAEEVNAALKAAAE 263 (331)
T ss_dssp EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 44445555666555554 678999999999998763
No 408
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=20.11 E-value=1.8e+02 Score=20.80 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=38.5
Q ss_pred hhhcCCeeEEEEEcCCCceeeEEEeCCCcHHHHHHHHHHHHhhh
Q 033077 59 SLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDM 102 (128)
Q Consensus 59 ale~GqAm~l~V~k~Dgs~~~VvV~~~ATV~dLKkAI~~~~~~~ 102 (128)
|.+.|.+|.|.|....|..+-..-+..|+..-...|+++.++-.
T Consensus 28 A~~~g~~v~IaVvD~~G~ll~~~rmdga~~~s~~ia~~KA~Ta~ 71 (145)
T 2a2l_A 28 ATEINVAVVFSVVDRGGNTLLIQRMDEAFVSSCDISLNKAWSAC 71 (145)
T ss_dssp HHHTTCCCEEEEEETTSCEEEEEECTTSCTTHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCCEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 67889999999998889888888888999999999999888654
Done!