Query 033079
Match_columns 128
No_of_seqs 157 out of 1109
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 3E-24 1E-28 152.6 8.7 85 10-94 23-111 (113)
2 3s6n_G Small nuclear ribonucle 99.9 2.7E-24 9.2E-29 142.6 7.5 75 1-84 1-75 (76)
3 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.2E-23 1.1E-27 143.2 10.6 79 10-88 10-92 (96)
4 1th7_A SnRNP-2, small nuclear 99.9 6.4E-23 2.2E-27 137.2 9.2 73 9-84 8-80 (81)
5 1mgq_A SM-like protein; LSM, R 99.9 9E-23 3.1E-27 137.3 9.4 78 1-81 6-83 (83)
6 1h64_1 SnRNP SM-like protein; 99.9 1E-22 3.5E-27 134.3 8.7 72 10-84 4-75 (75)
7 1i4k_A Putative snRNP SM-like 99.9 1.5E-22 5.3E-27 133.9 8.9 73 10-85 4-76 (77)
8 1i8f_A Putative snRNP SM-like 99.9 2.6E-22 8.9E-27 134.4 9.6 80 1-84 1-81 (81)
9 1ljo_A Archaeal SM-like protei 99.9 2.4E-22 8.2E-27 133.2 8.9 73 9-84 4-77 (77)
10 3s6n_F Small nuclear ribonucle 99.9 2.4E-22 8.3E-27 136.4 9.1 76 9-87 5-80 (86)
11 1d3b_B Protein (small nuclear 99.9 2.7E-22 9.3E-27 136.6 8.0 76 11-86 5-87 (91)
12 4emk_B U6 snRNA-associated SM- 99.9 2.3E-22 7.8E-27 132.9 7.0 71 10-83 4-74 (75)
13 4emk_A U6 snRNA-associated SM- 99.9 1.2E-21 4E-26 135.3 9.6 74 9-84 19-92 (94)
14 4emh_A Probable U6 snRNA-assoc 99.9 1E-21 3.4E-26 138.1 8.3 79 7-87 13-91 (105)
15 2fwk_A U6 snRNA-associated SM- 99.9 1.1E-21 3.8E-26 140.5 7.9 81 7-87 25-117 (121)
16 4emg_A Probable U6 snRNA-assoc 99.9 2.8E-21 9.5E-26 132.9 9.6 73 10-82 9-91 (93)
17 1d3b_A Protein (small nuclear 99.8 4.4E-21 1.5E-25 127.0 9.2 71 10-83 5-75 (75)
18 1n9r_A SMF, small nuclear ribo 99.8 1.9E-21 6.5E-26 133.8 7.6 74 7-83 18-92 (93)
19 3s6n_E Small nuclear ribonucle 99.8 2.4E-21 8.3E-26 133.2 6.5 73 9-83 15-91 (92)
20 1b34_A Protein (small nuclear 99.8 2.1E-20 7E-25 133.7 9.3 74 9-85 1-74 (119)
21 3pgw_B SM B; protein-RNA compl 99.8 5.4E-20 1.8E-24 144.4 9.5 75 11-85 5-86 (231)
22 1b34_B Protein (small nuclear 99.8 6.1E-20 2.1E-24 130.9 8.8 76 10-85 27-115 (118)
23 2y9a_D Small nuclear ribonucle 99.8 5.9E-19 2E-23 127.5 9.3 75 10-87 5-79 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 9.1E-19 3.1E-23 127.1 7.5 68 13-87 3-70 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.8 1.5E-08 5E-13 68.7 7.6 66 13-87 10-76 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 96.7 0.015 5E-07 39.3 8.5 68 17-84 10-84 (88)
27 2ylb_A Protein HFQ; RNA-bindin 96.3 0.0061 2.1E-07 39.8 4.7 40 9-48 8-49 (74)
28 1kq1_A HFQ, HOST factor for Q 96.2 0.011 3.7E-07 38.9 5.3 42 9-50 6-49 (77)
29 2fb7_A SM-like protein, LSM-14 96.1 0.016 5.6E-07 39.5 6.3 75 9-83 8-89 (95)
30 1u1s_A HFQ protein; SM-like ba 95.7 0.019 6.5E-07 38.2 5.1 39 10-48 7-47 (82)
31 3ahu_A Protein HFQ; SM-like mo 95.7 0.022 7.5E-07 37.6 5.2 41 10-50 11-53 (78)
32 2qtx_A Uncharacterized protein 95.5 0.025 8.7E-07 36.6 5.0 31 20-50 25-55 (71)
33 2y90_A Protein HFQ; RNA-bindin 95.2 0.024 8.3E-07 39.3 4.4 39 10-48 9-49 (104)
34 1y96_B Gemin7, SIP3, GEM-assoc 95.1 0.11 3.9E-06 34.7 7.4 60 14-81 23-83 (85)
35 3sb2_A Protein HFQ; SM-like, R 94.7 0.045 1.6E-06 36.1 4.5 38 10-47 8-47 (79)
36 3hfo_A SSR3341 protein; HFQ, S 94.3 0.088 3E-06 34.0 5.1 48 1-49 1-50 (70)
37 4a53_A EDC3; RNA binding prote 94.1 0.066 2.3E-06 38.1 4.6 59 14-86 6-66 (125)
38 2vc8_A Enhancer of mRNA-decapp 93.7 0.32 1.1E-05 32.4 7.0 65 16-86 5-71 (84)
39 3hfn_A ASL2047 protein; HFQ, S 93.6 0.14 4.8E-06 33.2 5.0 42 8-49 9-52 (72)
40 1ycy_A Conserved hypothetical 92.2 0.48 1.7E-05 30.2 5.9 64 10-81 6-69 (71)
41 3rux_A BIRA bifunctional prote 90.7 0.31 1.1E-05 38.1 4.7 34 18-51 222-255 (270)
42 1ib8_A Conserved protein SP14. 89.1 0.45 1.5E-05 34.8 4.3 39 9-48 93-135 (164)
43 2eay_A Biotin [acetyl-COA-carb 84.3 0.78 2.7E-05 34.9 3.4 48 17-73 185-232 (233)
44 1bia_A BIRA bifunctional prote 84.0 2.2 7.7E-05 33.6 6.1 49 17-73 270-318 (321)
45 2dxu_A Biotin--[acetyl-COA-car 81.8 1.2 4.1E-05 34.0 3.6 30 19-50 188-217 (235)
46 2xk0_A Polycomb protein PCL; t 81.2 4.7 0.00016 25.7 5.6 29 15-43 14-42 (69)
47 2ej9_A Putative biotin ligase; 79.8 2.5 8.6E-05 32.1 4.8 32 18-50 190-221 (237)
48 2e12_A SM-like motif, hypothet 79.6 4.5 0.00016 27.3 5.4 37 1-37 1-45 (101)
49 3rkx_A Biotin-[acetyl-COA-carb 73.4 3.7 0.00013 32.6 4.3 32 18-50 277-308 (323)
50 3bfm_A Biotin protein ligase-l 73.2 4.4 0.00015 30.5 4.5 29 17-50 191-219 (235)
51 2rm4_A CG6311-PB, DM EDC3; enh 73.1 10 0.00035 25.8 5.8 66 16-86 8-74 (103)
52 4hcz_A PHD finger protein 1; p 69.8 6.7 0.00023 24.2 3.9 26 19-44 6-31 (58)
53 4gop_A Putative uncharacterize 56.6 12 0.00043 25.4 3.8 38 1-49 1-38 (114)
54 2eqj_A Metal-response element- 51.1 23 0.00078 22.3 4.0 26 18-43 15-40 (66)
55 3fb9_A Uncharacterized protein 50.7 25 0.00084 23.4 4.4 28 13-40 18-49 (90)
56 2m0o_A PHD finger protein 1; t 44.6 11 0.00037 24.6 1.8 30 15-44 25-54 (79)
57 2qqr_A JMJC domain-containing 40.4 32 0.0011 23.8 3.8 24 18-41 7-30 (118)
58 1ky9_A Protease DO, DEGP, HTRA 40.3 37 0.0013 27.8 4.8 31 21-51 111-141 (448)
59 4a8c_A Periplasmic PH-dependen 39.4 39 0.0013 27.5 4.8 31 21-51 88-118 (436)
60 1x4r_A PARP14 protein; WWE dom 38.8 2.2 7.5E-05 29.0 -2.4 19 34-52 34-52 (99)
61 2pi2_E Replication protein A 1 35.5 32 0.0011 24.4 3.2 28 6-41 29-56 (142)
62 3kdf_A Replication protein A 1 35.4 33 0.0011 23.5 3.3 28 6-41 8-35 (121)
63 3stj_A Protease DEGQ; serine p 32.3 53 0.0018 25.9 4.4 30 21-50 88-117 (345)
64 2xdp_A Lysine-specific demethy 32.2 51 0.0018 22.9 3.8 22 19-40 67-88 (123)
65 3sti_A Protease DEGQ; serine p 30.3 58 0.002 24.4 4.2 30 21-50 88-117 (245)
66 2e5p_A Protein PHF1, PHD finge 30.2 77 0.0026 19.9 4.0 38 18-55 11-51 (68)
67 2qqr_A JMJC domain-containing 29.8 60 0.0021 22.4 3.8 22 19-40 66-87 (118)
68 3pv2_A DEGQ; trypsin fold, PDZ 29.1 49 0.0017 27.1 3.8 31 21-51 102-132 (451)
69 2wr8_A Putative uncharacterize 28.8 45 0.0016 25.9 3.4 21 30-50 171-191 (259)
70 2zbv_A Uncharacterized conserv 27.1 49 0.0017 25.7 3.3 20 30-49 167-186 (263)
71 1sg5_A ORF, hypothetical prote 26.9 31 0.0011 22.5 1.8 54 15-79 20-73 (86)
72 3lgi_A Protease DEGS; stress-s 26.7 86 0.0029 22.8 4.5 29 21-49 77-105 (237)
73 3tjo_A Serine protease HTRA1; 25.9 91 0.0031 22.8 4.5 31 20-50 86-116 (231)
74 1te0_A Protease DEGS; two doma 25.6 84 0.0029 24.1 4.4 30 21-50 66-95 (318)
75 1lcy_A HTRA2 serine protease; 25.2 89 0.003 24.1 4.5 30 21-50 71-100 (325)
76 1y8t_A Hypothetical protein RV 24.8 81 0.0028 24.1 4.2 29 21-49 64-92 (324)
77 3qx1_A FAS-associated factor 1 24.7 46 0.0016 20.7 2.3 22 21-42 8-29 (84)
78 2e5q_A PHD finger protein 19; 24.4 65 0.0022 20.0 2.8 37 19-55 10-49 (63)
79 3tee_A Flagella basal BODY P-r 21.7 59 0.002 24.3 2.7 23 17-39 168-190 (219)
80 3kl9_A PEPA, glutamyl aminopep 21.1 69 0.0024 25.4 3.2 24 16-39 95-118 (355)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.90 E-value=3e-24 Score=152.65 Aligned_cols=85 Identities=29% Similarity=0.429 Sum_probs=57.8
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCc----eeceeecceEEEecCcEEEEeccCcc
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDIPLGLYVIRGENVVLIGELDLE 85 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~----~~~~r~lG~v~IRG~nIv~I~~~d~~ 85 (128)
.+...|.+|++++|+|.|+|||+|+|+|+|||+||||||+||+|++..++ ....+.+|+++|||+||++|+++|..
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 45677999999999999999999999999999999999999999976432 13468999999999999999999999
Q ss_pred cccCCCCCC
Q 033079 86 RDELPPHLT 94 (128)
Q Consensus 86 ~e~~~~~~~ 94 (128)
.++.+|+.+
T Consensus 103 ee~~~p~~~ 111 (113)
T 4emk_C 103 EEIPNPFVQ 111 (113)
T ss_dssp ---------
T ss_pred ccccCcccc
Confidence 987666654
No 2
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.90 E-value=2.7e-24 Score=142.65 Aligned_cols=75 Identities=36% Similarity=0.635 Sum_probs=53.0
Q ss_pred CCCCCCCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEe
Q 033079 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 80 (128)
Q Consensus 1 ms~~~~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~ 80 (128)
||++++ +.|.+++|++|+|.|+|||+|+|+|.|||+|||++|+||.|+...++ .+.+|.++|||++|++|+
T Consensus 1 ms~~~~------~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~---~~~lg~v~iRG~~I~~i~ 71 (76)
T 3s6n_G 1 MSKAHP------PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGNSIIMLE 71 (76)
T ss_dssp -------------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-------CBSSEEECSSSEEEEE
T ss_pred CCCcch------HHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCc---EeEcCEEEECCCeEEEEE
Confidence 888755 56999999999999999999999999999999999999999875432 578999999999999999
Q ss_pred ccCc
Q 033079 81 ELDL 84 (128)
Q Consensus 81 ~~d~ 84 (128)
++|.
T Consensus 72 ~~d~ 75 (76)
T 3s6n_G 72 ALER 75 (76)
T ss_dssp C---
T ss_pred eccC
Confidence 8874
No 3
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.2e-23 Score=143.16 Aligned_cols=79 Identities=30% Similarity=0.390 Sum_probs=67.2
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCc----eeceeecceEEEecCcEEEEeccCcc
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDIPLGLYVIRGENVVLIGELDLE 85 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~----~~~~r~lG~v~IRG~nIv~I~~~d~~ 85 (128)
-|.+.|.+++|++|+|+|+|||.|.|+|+|||+||||+|+||.|++...+ ....+++|.++|||+||++|++++..
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 48899999999999999999999999999999999999999999986432 22468899999999999999999988
Q ss_pred ccc
Q 033079 86 RDE 88 (128)
Q Consensus 86 ~e~ 88 (128)
.+.
T Consensus 90 ~d~ 92 (96)
T 3bw1_A 90 DDG 92 (96)
T ss_dssp ---
T ss_pred ccc
Confidence 763
No 4
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.89 E-value=6.4e-23 Score=137.24 Aligned_cols=73 Identities=37% Similarity=0.470 Sum_probs=65.5
Q ss_pred CchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCc
Q 033079 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 84 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 84 (128)
..|.+.|.++++++|+|.|+|||+|.|+|.|||+|||++|+||.|++... ..+.+|.++|||++|++|+.+|+
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG---SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS---CEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC---ceeECCEEEECCCEEEEEEecCC
Confidence 45889999999999999999999999999999999999999999987432 35889999999999999998875
No 5
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.88 E-value=9e-23 Score=137.29 Aligned_cols=78 Identities=29% Similarity=0.351 Sum_probs=67.6
Q ss_pred CCCCCCCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEe
Q 033079 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 80 (128)
Q Consensus 1 ms~~~~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~ 80 (128)
||.-......|...|.+++|++|+|.|+|||+|.|+|.|||+|||++|+||.|++.. . ..+.+|.++|||++|++|+
T Consensus 6 ms~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-~--~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 6 VSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG-E--VTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp ----CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT-E--EEEEEEEEEECGGGEEEEE
T ss_pred cccccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC-C--cccCCCEEEECCCEEEEEE
Confidence 787777778899999999999999999999999999999999999999999998742 2 3688999999999999997
Q ss_pred c
Q 033079 81 E 81 (128)
Q Consensus 81 ~ 81 (128)
+
T Consensus 83 p 83 (83)
T 1mgq_A 83 P 83 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.88 E-value=1e-22 Score=134.27 Aligned_cols=72 Identities=31% Similarity=0.326 Sum_probs=64.4
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCc
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 84 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 84 (128)
.|.+.|.+++|++|+|.|+|||.|.|+|.|||+|||++|+||.|++.. ...+.+|.++|||++|++|+++|+
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC---CceeECCEEEECCCEEEEEEeCCC
Confidence 478999999999999999999999999999999999999999998742 236889999999999999998764
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.88 E-value=1.5e-22 Score=133.86 Aligned_cols=73 Identities=30% Similarity=0.306 Sum_probs=65.4
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcc
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLE 85 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 85 (128)
.|.+.|.+++|++|+|.|+|||.|.|+|.|||+|||++|+||.|++..+ ..+.+|.++|||++|++|+.+|+.
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE---VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEECC--
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC---cEeECCEEEECCCEEEEEEeCCCC
Confidence 4789999999999999999999999999999999999999999987422 367899999999999999998864
No 8
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.88 E-value=2.6e-22 Score=134.38 Aligned_cols=80 Identities=35% Similarity=0.429 Sum_probs=65.5
Q ss_pred CCCC-CCCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEE
Q 033079 1 MSWA-GPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLI 79 (128)
Q Consensus 1 ms~~-~~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I 79 (128)
||.. ......|...|.++++++|+|.|+|||+|.|+|.|||+|||++|+||.|+ .+. ..+.+|.++|||++|++|
T Consensus 1 m~~~~~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~--~~~~lg~v~iRG~~I~~i 76 (81)
T 1i8f_A 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDG--NVYKRGTMVVRGENVLFI 76 (81)
T ss_dssp ---------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETT--EEEEEEEEEECGGGEEEE
T ss_pred CCcccCccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCC--cccCCCEEEECCCEEEEE
Confidence 4443 22346688999999999999999999999999999999999999999998 332 368899999999999999
Q ss_pred eccCc
Q 033079 80 GELDL 84 (128)
Q Consensus 80 ~~~d~ 84 (128)
+++|.
T Consensus 77 ~~~dg 81 (81)
T 1i8f_A 77 SPVPG 81 (81)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 98773
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.87 E-value=2.4e-22 Score=133.18 Aligned_cols=73 Identities=30% Similarity=0.349 Sum_probs=65.2
Q ss_pred CchhHHHhhccCCeEEEEEcCC-cEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCc
Q 033079 9 VYLSTSLASYLDKKLLVLLRDG-RKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 84 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdG-r~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 84 (128)
+.|.+.|.++++++|+|.|++| ++|.|+|.|||+|||++|+||.|+.. ++ ..+.+|.++|||+||++|+++|+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-EE--KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-CC--cEeECCeEEEeCCeEEEEEeCCC
Confidence 4688999999999999999999 99999999999999999999999873 32 36789999999999999998874
No 10
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.87 E-value=2.4e-22 Score=136.36 Aligned_cols=76 Identities=28% Similarity=0.323 Sum_probs=66.0
Q ss_pred CchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcccc
Q 033079 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 87 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~e 87 (128)
..|.+.|++++|++|+|.|++|++|.|+|.|||+|||++|+||.|+. .++ ..+.+|.++|||+||++|+.+|+..+
T Consensus 5 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~--~~~~lg~v~IRG~nI~~i~~~d~~~~ 80 (86)
T 3s6n_F 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGA--LSGHLGEVLIRCNNVLYIRGVEEEEE 80 (86)
T ss_dssp CCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTE--EEEEESSEEECGGGEEEEEECC----
T ss_pred cCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCc--eeeEccEEEEeCCeEEEEEeCCcccc
Confidence 45899999999999999999999999999999999999999999975 332 25789999999999999999998775
No 11
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.87 E-value=2.7e-22 Score=136.56 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=64.7
Q ss_pred hhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEee--C-----ceeceeecceEEEecCcEEEEeccC
Q 033079 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV--G-----DLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 11 ~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~--~-----~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
+++.|.+++|++|+|+|+|||+|+|+|+|||+||||+|+||.|++.. . .....+.+|.++|||++|++|+..+
T Consensus 5 ~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~ 84 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (91)
T ss_dssp --CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEE
T ss_pred hhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCC
Confidence 55779999999999999999999999999999999999999997532 1 2235688999999999999999876
Q ss_pred ccc
Q 033079 84 LER 86 (128)
Q Consensus 84 ~~~ 86 (128)
...
T Consensus 85 ~~~ 87 (91)
T 1d3b_B 85 PPP 87 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.87 E-value=2.3e-22 Score=132.91 Aligned_cols=71 Identities=32% Similarity=0.413 Sum_probs=64.0
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccC
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
.|.+.|++++|++|+|+|+|||+|.|+|.|||+|||++|+||.|+.. ++ ..+.+|.++|||++|++|+++|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-GK--KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-TE--EEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-CC--cccEecEEEEcCCeEEEEEecC
Confidence 47899999999999999999999999999999999999999999863 32 3578999999999999999876
No 13
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.86 E-value=1.2e-21 Score=135.32 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=64.8
Q ss_pred CchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCc
Q 033079 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDL 84 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 84 (128)
..|...|.++++++|+|.|++||+|+|+|+|||+||||+|+||+|+...++ ..+.+|.++|||+||++|++..+
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~IRG~nI~~i~p~~~ 92 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG--VTEKHSEMLLNGNGMCMLIPGGK 92 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTC--CEEEEEEEEECSTTEEEEEECC-
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCC--cEeEcCEEEEcCCEEEEEEeCCC
Confidence 456789999999999999999999999999999999999999999973332 36789999999999999997643
No 14
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1e-21 Score=138.10 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCccc
Q 033079 7 DDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 86 (128)
Q Consensus 7 ~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~ 86 (128)
+.-.|..+|.+++|++|+|+|++|++|.|+|.|||+||||+|+||+|...+++ ..+.+|.++|||++|++|..+|..+
T Consensus 13 ~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~--~~~~lg~v~IRG~nI~~I~~pd~l~ 90 (105)
T 4emh_A 13 DPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGD--KFFRLPECYIRGNNIKYLRIQDEVL 90 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEEECGGGEEEEEC-----
T ss_pred CCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCc--eeeEcCeEEEeCCeEEEEecCHHHh
Confidence 44568889999999999999999999999999999999999999999864443 2578999999999999999999887
Q ss_pred c
Q 033079 87 D 87 (128)
Q Consensus 87 e 87 (128)
+
T Consensus 91 d 91 (105)
T 4emh_A 91 S 91 (105)
T ss_dssp -
T ss_pred h
Confidence 6
No 15
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.85 E-value=1.1e-21 Score=140.50 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=67.9
Q ss_pred CCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeC-------ceec-----eeecceEEEecC
Q 033079 7 DDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVG-------DLYC-----DIPLGLYVIRGE 74 (128)
Q Consensus 7 ~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~-------~~~~-----~r~lG~v~IRG~ 74 (128)
....|...|.++++++|+|.|+|||.|+|+|+|||+||||||+||+|++... +... .+.+|.++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 4467889999999999999999999999999999999999999999998531 1112 578999999999
Q ss_pred cEEEEeccCcccc
Q 033079 75 NVVLIGELDLERD 87 (128)
Q Consensus 75 nIv~I~~~d~~~e 87 (128)
+|++|+..+...+
T Consensus 105 nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 105 NVAMLVPGGDPDS 117 (121)
T ss_dssp GEEEEESSSCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999998877654
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.8e-21 Score=132.89 Aligned_cols=73 Identities=29% Similarity=0.344 Sum_probs=63.7
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEee----Cc------eeceeecceEEEecCcEEEE
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV----GD------LYCDIPLGLYVIRGENVVLI 79 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~----~~------~~~~r~lG~v~IRG~nIv~I 79 (128)
.|...|+.++|++|+|.|++||.|.|+|.|||+||||+|+||+|++.. ++ ....+.+|.++|||+||++|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 477899999999999999999999999999999999999999999853 21 02368899999999999999
Q ss_pred ecc
Q 033079 80 GEL 82 (128)
Q Consensus 80 ~~~ 82 (128)
+++
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 964
No 17
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.85 E-value=4.4e-21 Score=126.98 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=64.6
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccC
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
.|...|++++|++|+|+|++|++|.|+|.|||+|||++|+||+|+...+. .+.+|.++|||++|.+|..+|
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~---~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR---VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC---EEEEEEEEECGGGEEEEEECC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc---EEEcCeEEEeCCEEEEEEcCC
Confidence 47899999999999999999999999999999999999999999863332 578999999999999999876
No 18
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.85 E-value=1.9e-21 Score=133.84 Aligned_cols=74 Identities=32% Similarity=0.324 Sum_probs=60.7
Q ss_pred CCCchhHHHhhccCCeEEEEEcCC-cEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccC
Q 033079 7 DDVYLSTSLASYLDKKLLVLLRDG-RKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 7 ~~~~~~~~L~~~l~k~V~V~LkdG-r~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
....|.+.|.+++|++|+|.|++| ++|.|+|.|||+||||+|+||+|++. ++ ..+.+|.++|||++|++|+.++
T Consensus 18 ~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-~~--~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 18 QPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-GV--SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp --------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-TE--EEEECCSEEECGGGEEEEEECC
T ss_pred ccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-CC--eEeEcCEEEEcCCeEEEEEeCC
Confidence 345677899999999999999999 99999999999999999999999863 32 3578999999999999999876
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.84 E-value=2.4e-21 Score=133.19 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=65.6
Q ss_pred CchhHHHhhccCCeEEEEE----cCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccC
Q 033079 9 VYLSTSLASYLDKKLLVLL----RDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~L----kdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
..|...|.++++++|+|++ ++||+|+|+|.|||+||||+|+||+|+...++ ..+.+|.++|||+||++|+++|
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSC--CEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC--ceeEcCeEEEeCCEEEEEEeCC
Confidence 4588999999999999999 99999999999999999999999999874333 3678999999999999999876
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.83 E-value=2.1e-20 Score=133.66 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=66.2
Q ss_pred CchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcc
Q 033079 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLE 85 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 85 (128)
+.|..+|.++++++|.|+|++|++|.|+|.+||+||||+|+||+|+...+ ..+.+|.++|||+||++|..+|..
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~---~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR---EPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCTTC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCC---ceeEcceEEEcCCeEEEEEecccc
Confidence 45788999999999999999999999999999999999999999986332 247899999999999999998873
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.81 E-value=5.4e-20 Score=144.41 Aligned_cols=75 Identities=28% Similarity=0.383 Sum_probs=64.8
Q ss_pred hhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeC-------ceeceeecceEEEecCcEEEEeccC
Q 033079 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVG-------DLYCDIPLGLYVIRGENVVLIGELD 83 (128)
Q Consensus 11 ~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~-------~~~~~r~lG~v~IRG~nIv~I~~~d 83 (128)
..+.|.+|+|++|+|+|+|||+|+|+|+|||+||||||+||+|++... +....+.+|+++|||+||++|+..+
T Consensus 5 k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred chHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 357899999999999999999999999999999999999999987411 1235789999999999999999655
Q ss_pred cc
Q 033079 84 LE 85 (128)
Q Consensus 84 ~~ 85 (128)
..
T Consensus 85 pP 86 (231)
T 3pgw_B 85 PP 86 (231)
T ss_pred CC
Confidence 43
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.81 E-value=6.1e-20 Score=130.86 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=63.1
Q ss_pred chhHHHhhcc--CCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCc----e-------eceeecceEEEecCcE
Q 033079 10 YLSTSLASYL--DKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----L-------YCDIPLGLYVIRGENV 76 (128)
Q Consensus 10 ~~~~~L~~~l--~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~----~-------~~~r~lG~v~IRG~nI 76 (128)
.|.+.|..++ +++|+|.|++||.|.|+|+|||+||||+|+||.|++.... . ...+.+|.++|||+||
T Consensus 27 ~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nV 106 (118)
T 1b34_B 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106 (118)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGE
T ss_pred ChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEE
Confidence 5778999999 5999999999999999999999999999999999874311 0 1246799999999999
Q ss_pred EEEeccCcc
Q 033079 77 VLIGELDLE 85 (128)
Q Consensus 77 v~I~~~d~~ 85 (128)
++|+..+..
T Consensus 107 v~I~~~~~~ 115 (118)
T 1b34_B 107 IVVLRNPLI 115 (118)
T ss_dssp EEEEECCCC
T ss_pred EEEEeCchh
Confidence 999988754
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.78 E-value=5.9e-19 Score=127.54 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=66.7
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcccc
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 87 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~e 87 (128)
.|..+|+++++++|+|.|++|++|.|+|.+||+||||+|+||+|+..+++ ...+|.++|||++|.+|+.+|....
T Consensus 5 ~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~---~~~l~~v~IRGnnI~~I~lpd~l~~ 79 (126)
T 2y9a_D 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR---VAQLEQVYIRGSKIRFLILPDMLKN 79 (126)
T ss_dssp CSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC---CEEEEEEEECGGGEEEEECCSSCSS
T ss_pred cHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc---EeecccEEEeCCEEEEEEccccccc
Confidence 46789999999999999999999999999999999999999999853332 5789999999999999998776554
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.76 E-value=9.1e-19 Score=127.13 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=62.1
Q ss_pred HHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcccc
Q 033079 13 TSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 87 (128)
Q Consensus 13 ~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~e 87 (128)
+.|.+++|++|+|.|++|+.|.|+|.|||+||||+|+||.|+. .+.+|.++|||+||++|+.+|...+
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~-------~~~lg~v~IRG~nI~~I~~~d~~~d 70 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA-------GEKFNRVFIMYRYIVHIDSTERRID 70 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT-------CCEEEEEEECGGGEEEEEECCCCCC
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc-------CCEeceEEEeCCeEEEEEcCCcccC
Confidence 6799999999999999999999999999999999999999862 2568999999999999998887644
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.82 E-value=1.5e-08 Score=68.72 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHHhhccCCeEEEEEcCCcEEEEEEEEec-CCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCcccc
Q 033079 13 TSLASYLDKKLLVLLRDGRKLMGTLCSFD-QFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD 87 (128)
Q Consensus 13 ~~L~~~l~k~V~V~LkdGr~~~G~L~~fD-~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~e 87 (128)
..|.+++||+|.|+|.||++|+|+|.+|| ...|++|.++ ..++ ..-.++|.|..|.-|...+...+
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~~~-----~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LEDG-----SMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CTTS-----CEEEEEECGGGEEEEEEEECCCH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----ccCC-----eEEEEEEecceEEEEEEecchhH
Confidence 46999999999999999999999999999 9999999998 1232 34789999999999987665543
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.68 E-value=0.015 Score=39.27 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.1
Q ss_pred hccCCeEEEEEcCCcEEEEEEEEec-CCcceEecceEEEEeeCce----e--ceeecceEEEecCcEEEEeccCc
Q 033079 17 SYLDKKLLVLLRDGRKLMGTLCSFD-QFANAVLEGACERVIVGDL----Y--CDIPLGLYVIRGENVVLIGELDL 84 (128)
Q Consensus 17 ~~l~k~V~V~LkdGr~~~G~L~~fD-~~mNlVL~da~E~~~~~~~----~--~~r~lG~v~IRG~nIv~I~~~d~ 84 (128)
.|+|+++.+..+.+-.|+|+|...| +..-+-|.++..+-.++.. . ...-+..++.||+.|.-+...+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 4899999999999999999999999 5668889998665333211 1 12335789999999998876543
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.30 E-value=0.0061 Score=39.83 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=33.4
Q ss_pred CchhHHHhhcc--CCeEEEEEcCCcEEEEEEEEecCCcceEe
Q 033079 9 VYLSTSLASYL--DKKLLVLLRDGRKLMGTLCSFDQFANAVL 48 (128)
Q Consensus 9 ~~~~~~L~~~l--~k~V~V~LkdGr~~~G~L~~fD~~mNlVL 48 (128)
......|+.+. ..+|.|.|.+|..+.|.+.+||+|+=++-
T Consensus 8 ~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 8 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred ccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 34556787777 68899999999999999999999985554
No 28
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.15 E-value=0.011 Score=38.94 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=34.5
Q ss_pred CchhHHHhhcc--CCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 9 VYLSTSLASYL--DKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 9 ~~~~~~L~~~l--~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
.....+|+.+. ..+|.|.|.+|-.+.|.+.+||+|+=++-.+
T Consensus 6 ~lQd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 6 NIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 34556677777 7889999999999999999999998666543
No 29
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.11 E-value=0.016 Score=39.51 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=52.2
Q ss_pred CchhHHHhhccCCeEEEEEcCCcEEEEEEEEec-CCcceEecceEEEEeeCce----e--ceeecceEEEecCcEEEEec
Q 033079 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFD-QFANAVLEGACERVIVGDL----Y--CDIPLGLYVIRGENVVLIGE 81 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD-~~mNlVL~da~E~~~~~~~----~--~~r~lG~v~IRG~nIv~I~~ 81 (128)
.-++..-..|+|++|.+..+.+-.|+|+|...| +..-|.|.++..+-.++.. . ...-+..++.||+.|.-+..
T Consensus 8 ~~~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V 87 (95)
T 2fb7_A 8 LEDPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTV 87 (95)
T ss_dssp --------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEE
T ss_pred cCCCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEE
Confidence 346677889999999999999999999999999 6667889987554322211 1 12345789999999998876
Q ss_pred cC
Q 033079 82 LD 83 (128)
Q Consensus 82 ~d 83 (128)
.+
T Consensus 88 ~e 89 (95)
T 2fb7_A 88 CE 89 (95)
T ss_dssp SC
T ss_pred ec
Confidence 54
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.73 E-value=0.019 Score=38.22 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=32.0
Q ss_pred chhHHHhhcc--CCeEEEEEcCCcEEEEEEEEecCCcceEe
Q 033079 10 YLSTSLASYL--DKKLLVLLRDGRKLMGTLCSFDQFANAVL 48 (128)
Q Consensus 10 ~~~~~L~~~l--~k~V~V~LkdGr~~~G~L~~fD~~mNlVL 48 (128)
....+|+.+- ..+|+|.|.+|-.+.|.+.+||+|+=++-
T Consensus 7 lQd~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 7 LQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 3455666666 67899999999999999999999986554
No 31
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.65 E-value=0.022 Score=37.55 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.2
Q ss_pred chhHHHhhcc--CCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 10 YLSTSLASYL--DKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 10 ~~~~~L~~~l--~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
.....|+.+- ..+|+|.|.+|-.+.|.+.+||+|+=++-.+
T Consensus 11 lQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 11 IQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 3445566666 7889999999999999999999998666544
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.53 E-value=0.025 Score=36.64 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 20 DKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 20 ~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
+.+|+|.|.+|-.+.|.+.|||+|+=++-.+
T Consensus 25 ~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 25 GKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 5789999999999999999999998666544
No 33
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.21 E-value=0.024 Score=39.25 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=32.6
Q ss_pred chhHHHhhccCC--eEEEEEcCCcEEEEEEEEecCCcceEe
Q 033079 10 YLSTSLASYLDK--KLLVLLRDGRKLMGTLCSFDQFANAVL 48 (128)
Q Consensus 10 ~~~~~L~~~l~k--~V~V~LkdGr~~~G~L~~fD~~mNlVL 48 (128)
..-.+|+.+..+ +|.|.|.+|-.+.|++.+||+|+=++-
T Consensus 9 lQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 9 LQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 445667777765 799999999999999999999986655
No 34
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.14 E-value=0.11 Score=34.67 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHhhccCCeEEEEEcCCcEEEEEEEEec-CCcceEecceEEEEeeCceeceeecceEEEecCcEEEEec
Q 033079 14 SLASYLDKKLLVLLRDGRKLMGTLCSFD-QFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81 (128)
Q Consensus 14 ~L~~~l~k~V~V~LkdGr~~~G~L~~fD-~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~ 81 (128)
.|....|++|.+.+.++-++.|++.++| ...|+..++-. . .-..+...++|+..|++++.
T Consensus 23 ~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-T-------PiGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 23 SLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-T-------PIGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-C-------TTCCEEEEEEEGGGEEEEEE
T ss_pred HHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-C-------CcccchhhhhhcCCEEEEEe
Confidence 4566789999999999999999999999 55677776531 0 11234578999999999874
No 35
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.73 E-value=0.045 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.4
Q ss_pred chhHHHhhccC--CeEEEEEcCCcEEEEEEEEecCCcceE
Q 033079 10 YLSTSLASYLD--KKLLVLLRDGRKLMGTLCSFDQFANAV 47 (128)
Q Consensus 10 ~~~~~L~~~l~--k~V~V~LkdGr~~~G~L~~fD~~mNlV 47 (128)
..-.+|+.+.. .+|.|.|.+|-.+.|.+.+||+|+=++
T Consensus 8 lQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred hHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 34566777765 459999999999999999999998665
No 36
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.33 E-value=0.088 Score=33.96 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=36.7
Q ss_pred CCCCCCCCCchhHHHhhccC--CeEEEEEcCCcEEEEEEEEecCCcceEec
Q 033079 1 MSWAGPDDVYLSTSLASYLD--KKLLVLLRDGRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 1 ms~~~~~~~~~~~~L~~~l~--k~V~V~LkdGr~~~G~L~~fD~~mNlVL~ 49 (128)
|+.-+| ..|+...|..|+- .+|.|.|.+|..++|.+.-+|.++=++-.
T Consensus 1 m~~fdt-~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~ 50 (70)
T 3hfo_A 1 MSRFDS-GLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVD 50 (70)
T ss_dssp ----CC-SCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred CCcccC-CCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEc
Confidence 554444 3677888999985 77999999999999999999999865543
No 37
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.12 E-value=0.066 Score=38.13 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=44.1
Q ss_pred HHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEe--cceEEEEeeCceeceeecceEEEecCcEEEEeccCccc
Q 033079 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVL--EGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 86 (128)
Q Consensus 14 ~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL--~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~ 86 (128)
++..|+|..|.|.|+||..++|++..+| --+|+| .+|...+ .-|+...|.-+..++...
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~~s~-------------~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLANDST-------------KSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETTTEE-------------EEEEGGGEEEEEECCSCC
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEecccccccc-------------ceeecccccceeeeeccc
Confidence 3678999999999999999999999998 446777 8873211 166777776666555444
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.74 E-value=0.32 Score=32.40 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred hhccCCeEEEEEcCCc-EEEEEEEEecCC-cceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCccc
Q 033079 16 ASYLDKKLLVLLRDGR-KLMGTLCSFDQF-ANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 86 (128)
Q Consensus 16 ~~~l~k~V~V~LkdGr-~~~G~L~~fD~~-mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~ 86 (128)
.+|+|+.|.|.++++- .|.|.+..+|.. .||.|.++. .+|= ....-.+.+++.-|.-+..++...
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~---~~~s~eVtls~~DI~~L~ii~~~~ 71 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV---KCLVPEVTFRAGDITELKILEIPG 71 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE---ECSSSEEEEEGGGCSEEEEEECCC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC---CCCCcEEEEEecChhheEEEecCC
Confidence 4799999999999999 999999999965 589999984 2331 223356889998887777655544
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.58 E-value=0.14 Score=33.19 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCchhHHHhhccC--CeEEEEEcCCcEEEEEEEEecCCcceEec
Q 033079 8 DVYLSTSLASYLD--KKLLVLLRDGRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 8 ~~~~~~~L~~~l~--k~V~V~LkdGr~~~G~L~~fD~~mNlVL~ 49 (128)
..|+...|..|+- .+|.|.|.+|..++|.+.-+|.++=++..
T Consensus 9 ~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~ 52 (72)
T 3hfn_A 9 SLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIAD 52 (72)
T ss_dssp CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred CCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEc
Confidence 3667788999996 66999999999999999999998755543
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.24 E-value=0.48 Score=30.16 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=43.7
Q ss_pred chhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEec
Q 033079 10 YLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81 (128)
Q Consensus 10 ~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~ 81 (128)
.--..|+.+-|++|-|.......|+|+|.-||.-. |.|.|++.+. +++ -..++++=+.|..|..
T Consensus 6 LLdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~--GNk-----~k~liv~idDinWimL 69 (71)
T 1ycy_A 6 LLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI--GNR-----GKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT--EEE-----EEEEEEEGGGEEEEEE
T ss_pred HHHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh--ccc-----cceeEEEeccceEEEe
Confidence 34467999999999999999999999999999875 6788887753 221 1245666666655543
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.65 E-value=0.31 Score=38.07 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.6
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEecCCcceEecce
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGA 51 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da 51 (128)
++|++|+|.+.+|..+.|+..|+|..+.|+|...
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 4689999998889999999999999999999654
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=89.12 E-value=0.45 Score=34.77 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=31.2
Q ss_pred CchhHHHhhccCCeEEEEEc----CCcEEEEEEEEecCCcceEe
Q 033079 9 VYLSTSLASYLDKKLLVLLR----DGRKLMGTLCSFDQFANAVL 48 (128)
Q Consensus 9 ~~~~~~L~~~l~k~V~V~Lk----dGr~~~G~L~~fD~~mNlVL 48 (128)
......+..++|+.|.|+++ +.+.|+|+|.++|.. .++|
T Consensus 93 L~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 93 LKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp CSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred CCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 45566789999999999994 448999999999875 3444
No 43
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=84.30 E-value=0.78 Score=34.87 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=33.7
Q ss_pred hccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEec
Q 033079 17 SYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRG 73 (128)
Q Consensus 17 ~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG 73 (128)
.++|++|+|...++ +.|+..|.|..+.|+|...... .....|.|.+|+
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G~-------~~~~~Gev~~r~ 232 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEGI-------KEILSGEFSLRR 232 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEETTEE-------EEECSCCEEEC-
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEECCCe-------EEEEEeEEEEec
Confidence 34789999976655 9999999999999999653211 122346666664
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=83.97 E-value=2.2 Score=33.60 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=34.9
Q ss_pred hccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEec
Q 033079 17 SYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRG 73 (128)
Q Consensus 17 ~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG 73 (128)
.++|++|+|... +..+.|+..|+|..+.|+|...... ....-|.|.+|+
T Consensus 270 ~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~g~-------~~~~~Gev~~r~ 318 (321)
T 1bia_A 270 NFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDGII-------KPWMGGEISLRS 318 (321)
T ss_dssp TTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETTEE-------EEESSCEEEEC-
T ss_pred hhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECCCE-------EEEEeeeEEEec
Confidence 457999999875 4589999999999999999653211 123346666664
No 45
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=81.79 E-value=1.2 Score=33.95 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 19 l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
+|++|+|...++ +.|+..|.|..+.|+|.+
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999988776 999999999999999975
No 46
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=81.16 E-value=4.7 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.7
Q ss_pred HhhccCCeEEEEEcCCcEEEEEEEEecCC
Q 033079 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQF 43 (128)
Q Consensus 15 L~~~l~k~V~V~LkdGr~~~G~L~~fD~~ 43 (128)
..-.+|..|.++.+||+.|-|+++...+.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~ 42 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSD 42 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSS
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCc
Confidence 55567899999999999999999655533
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=79.84 E-value=2.5 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=28.8
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
++|++|+|...++..+.|+..|+|..+.|+ .+
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 579999999988877999999999999999 64
No 48
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=79.64 E-value=4.5 Score=27.26 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=25.8
Q ss_pred CCCCCCCCCchhHH------HhhccC--CeEEEEEcCCcEEEEEE
Q 033079 1 MSWAGPDDVYLSTS------LASYLD--KKLLVLLRDGRKLMGTL 37 (128)
Q Consensus 1 ms~~~~~~~~~~~~------L~~~l~--k~V~V~LkdGr~~~G~L 37 (128)
||+.-|--|+--.. +...++ .+|++.|.||+.+.||+
T Consensus 1 m~~~AP~V~td~~qIa~Le~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 1 MPKYAPHVYTEQAQIATLEHWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp CCCBCSCCBCCHHHHHHHHHHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred CCccCcccccCHHHHHHHHHHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 67777654443222 334444 78999999999999987
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=73.35 E-value=3.7 Score=32.63 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
++|++|+|.. ++..+.|+..|+|..+.|+|.+
T Consensus 277 ~~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 5689999976 4568999999999999999964
No 50
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=73.19 E-value=4.4 Score=30.51 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.2
Q ss_pred hccCCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 17 SYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 17 ~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
-++|++|+| +| +.|+..|+|..+.|+|..
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 347899999 45 999999999999999965
No 51
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=73.11 E-value=10 Score=25.81 Aligned_cols=66 Identities=8% Similarity=0.068 Sum_probs=48.7
Q ss_pred hhccCCeEEEEEcCCc-EEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEEeccCccc
Q 033079 16 ASYLDKKLLVLLRDGR-KLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 86 (128)
Q Consensus 16 ~~~l~k~V~V~LkdGr-~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~~ 86 (128)
.+|+|+-|.|.+.+.- .|+|.+...|+ -+|.|.+|.. +|=. -....-.|.++...|..+..++...
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGip-lk~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVP-LRKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEE-CSCSSSCEEEETTTEEEEEEEECCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcC-cCCCCceEEEEecchhheeeecccc
Confidence 4899999999999998 99999999995 4599988854 2210 0123457888888777776655444
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=69.79 E-value=6.7 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCcEEEEEEEEecCCc
Q 033079 19 LDKKLLVLLRDGRKLMGTLCSFDQFA 44 (128)
Q Consensus 19 l~k~V~V~LkdGr~~~G~L~~fD~~m 44 (128)
.|..|.+.-+||+.|-|++..+|...
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCC
Confidence 47889999999999999999998764
No 53
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=56.62 E-value=12 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCCCCCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEecCCcceEec
Q 033079 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 1 ms~~~~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~ 49 (128)
|+...| ....+.|..|.|++|++. |++.++|. .-++|.
T Consensus 1 m~~~tp--RVn~~~L~~~~g~~Vriv--------GkV~~~~g-~~~~l~ 38 (114)
T 4gop_A 1 MEKPTP--LINSSMLGQYVGQTVRIV--------GKVHKVTG-NTLLMQ 38 (114)
T ss_dssp CCCCCC--EECTTTGGGGTTSEEEEE--------EEEEEEET-TEEEEE
T ss_pred CCCCCc--eECHHHHHhhCCCeEEEE--------EEEeeeCC-CEEEEE
Confidence 555444 667788999999999875 77777776 555555
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=51.12 E-value=23 Score=22.30 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.2
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEecCC
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFDQF 43 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD~~ 43 (128)
-.|..|+..-.||+.|-|++..+++.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccC
Confidence 46788999999999999999999874
No 55
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=50.66 E-value=25 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHhhccCCeEEEEEcCCc----EEEEEEEEe
Q 033079 13 TSLASYLDKKLLVLLRDGR----KLMGTLCSF 40 (128)
Q Consensus 13 ~~L~~~l~k~V~V~LkdGr----~~~G~L~~f 40 (128)
..|..++|++|.++.+.|| +-.|+|...
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 3588999999999999998 567877654
No 56
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.63 E-value=11 Score=24.57 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=25.8
Q ss_pred HhhccCCeEEEEEcCCcEEEEEEEEecCCc
Q 033079 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFA 44 (128)
Q Consensus 15 L~~~l~k~V~V~LkdGr~~~G~L~~fD~~m 44 (128)
..-..|.-|.+.-+||+.|-|++.-.|...
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~~~ 54 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDSAR 54 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEETTT
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEeccCC
Confidence 455678999999999999999999888653
No 57
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=40.41 E-value=32 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEec
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFD 41 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD 41 (128)
.+|.+|..+-++||.|.|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 478999999999999999998865
No 58
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=40.33 E-value=37 Score=27.84 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.8
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecce
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEGA 51 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da 51 (128)
..+.|.+.||+.|.+++.++|...+|-|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999988876443
No 59
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=39.39 E-value=39 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.0
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecce
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEGA 51 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da 51 (128)
.++.|.+.||+.|.+++.++|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999988876443
No 60
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.76 E-value=2.2 Score=29.04 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.8
Q ss_pred EEEEEEecCCcceEecceE
Q 033079 34 MGTLCSFDQFANAVLEGAC 52 (128)
Q Consensus 34 ~G~L~~fD~~mNlVL~da~ 52 (128)
-|++.+||.-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999999985
No 61
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=35.46 E-value=32 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEec
Q 033079 6 PDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFD 41 (128)
Q Consensus 6 ~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD 41 (128)
|......+.|..|+|++|++. |++.+++
T Consensus 29 ~~pRVN~s~L~~fvGk~VriV--------GkV~~~~ 56 (142)
T 2pi2_E 29 PRSRINAGMLAQFIDKPVCFV--------GRLEKIH 56 (142)
T ss_dssp CCEEECGGGGGGSTTCEEEEE--------EEEEEEC
T ss_pred CcceECHHHHHhhCCCEEEEE--------EEEeEEc
Confidence 344667788999999999876 5555554
No 62
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=35.43 E-value=33 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCCCchhHHHhhccCCeEEEEEcCCcEEEEEEEEec
Q 033079 6 PDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFD 41 (128)
Q Consensus 6 ~~~~~~~~~L~~~l~k~V~V~LkdGr~~~G~L~~fD 41 (128)
|......+.|.+|+|++|++. |++..++
T Consensus 8 p~pRVn~s~L~~fvgk~Vriv--------GkV~~~~ 35 (121)
T 3kdf_A 8 PRSRINAGMLAQFIDKPVCFV--------GRLEKIH 35 (121)
T ss_dssp CCEEECGGGGGGGTTCEEEEE--------EEEEEEC
T ss_pred CcceECHHHHHhhCCCeEEEE--------EEEEEEc
Confidence 444677889999999999876 6666665
No 63
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=32.31 E-value=53 Score=25.86 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.9
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
.++.|.+.||+.+.+++.++|...+|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEE
Confidence 478999999999999999999988876643
No 64
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=32.22 E-value=51 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=20.7
Q ss_pred cCCeEEEEEcCCcEEEEEEEEe
Q 033079 19 LDKKLLVLLRDGRKLMGTLCSF 40 (128)
Q Consensus 19 l~k~V~V~LkdGr~~~G~L~~f 40 (128)
.|..|.|.-.||..|.|+++|.
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~ 88 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGS 88 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeee
Confidence 5789999999999999999998
No 65
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=30.26 E-value=58 Score=24.40 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.4
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
.++.|.+.+|+.+.+.+.++|....|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 468999999999999999999988876643
No 66
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.22 E-value=77 Score=19.94 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.0
Q ss_pred ccCCeEEEEEcCCcEEEEEEEEecCCcc---eEecceEEEE
Q 033079 18 YLDKKLLVLLRDGRKLMGTLCSFDQFAN---AVLEGACERV 55 (128)
Q Consensus 18 ~l~k~V~V~LkdGr~~~G~L~~fD~~mN---lVL~da~E~~ 55 (128)
-.|.-|...-+||+.|-|++.-.|.+.- +...|..+.+
T Consensus 11 ~eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~w 51 (68)
T 2e5p_A 11 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 51 (68)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEE
T ss_pred ccCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeee
Confidence 3578899999999999999999996432 3334544444
No 67
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=29.82 E-value=60 Score=22.41 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=20.5
Q ss_pred cCCeEEEEEcCCcEEEEEEEEe
Q 033079 19 LDKKLLVLLRDGRKLMGTLCSF 40 (128)
Q Consensus 19 l~k~V~V~LkdGr~~~G~L~~f 40 (128)
.|..|.|.-.||..|-|+++|.
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~ 87 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVAS 87 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEeeeEEece
Confidence 5789999999999999999986
No 68
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=29.12 E-value=49 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.7
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecce
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEGA 51 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da 51 (128)
..+.|.+.||+.|.+++.++|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4689999999999999999999988876443
No 69
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=28.77 E-value=45 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.0
Q ss_pred CcEEEEEEEEecCCcceEecc
Q 033079 30 GRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 30 Gr~~~G~L~~fD~~mNlVL~d 50 (128)
+..+.|.+.-+|.|+|++..=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998754
No 70
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=27.09 E-value=49 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=17.4
Q ss_pred CcEEEEEEEEecCCcceEec
Q 033079 30 GRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 30 Gr~~~G~L~~fD~~mNlVL~ 49 (128)
+..+.|.+.-+|.|+|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45789999999999999864
No 71
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=26.93 E-value=31 Score=22.47 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=34.6
Q ss_pred HhhccCCeEEEEEcCCcEEEEEEEEecCCcceEecceEEEEeeCceeceeecceEEEecCcEEEE
Q 033079 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLI 79 (128)
Q Consensus 15 L~~~l~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~da~E~~~~~~~~~~r~lG~v~IRG~nIv~I 79 (128)
+.-..+.++.|.++||..+.|+.. .+...+-.|+..-. ..-|...||=+.|..+
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a~------D~~~~~k~E~L~l~-----~~~~~~~irLD~I~s~ 73 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKAS------DLVSRKNVEYLVVE-----AAGETRELRLDKITSF 73 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESSC------EEECCSSSCEEEEE-----ETTEEEEESTTCCSEE
T ss_pred HHHHcCCeEEEEEeCCCEEEEEEE------eeEEcCceEEEEEE-----cCCCEEEEEchhhhhc
Confidence 444567999999999998888543 23334444444211 1235667888888877
No 72
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=26.71 E-value=86 Score=22.84 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.5
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEec
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~ 49 (128)
..+.|.+.+|+.+.+++.++|...+|-|=
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 57899999999999999999998877663
No 73
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=25.93 E-value=91 Score=22.76 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 20 DKKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 20 ~k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
...+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~ 116 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIK 116 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEE
Confidence 3579999999999999999999988776643
No 74
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=25.56 E-value=84 Score=24.06 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.8
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
..+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 368999999999999999999988877643
No 75
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=25.17 E-value=89 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.8
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEecc
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLEG 50 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~d 50 (128)
..+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEE
Confidence 578999999999999999999888876643
No 76
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=24.79 E-value=81 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=25.6
Q ss_pred CeEEEEEcCCcEEEEEEEEecCCcceEec
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQFANAVLE 49 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~~mNlVL~ 49 (128)
..+.|.+.+|+.+.+++.+||...+|-|=
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAll 92 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVV 92 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEE
Confidence 48999999999999999999988887663
No 77
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=24.69 E-value=46 Score=20.70 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.6
Q ss_pred CeEEEEEcCCcEEEEEEEEecC
Q 033079 21 KKLLVLLRDGRKLMGTLCSFDQ 42 (128)
Q Consensus 21 k~V~V~LkdGr~~~G~L~~fD~ 42 (128)
.+|.|.+.||..++++|..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 4689999999999999987664
No 78
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.41 E-value=65 Score=20.00 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.3
Q ss_pred cCCeEEEEEcCCcEEEEEEEEecCCc---ceEecceEEEE
Q 033079 19 LDKKLLVLLRDGRKLMGTLCSFDQFA---NAVLEGACERV 55 (128)
Q Consensus 19 l~k~V~V~LkdGr~~~G~L~~fD~~m---NlVL~da~E~~ 55 (128)
.|.-|...-+||+.|-|++.-.|... =+...|..+.+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~w 49 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYW 49 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeE
Confidence 57889999999999999999999652 33334444443
No 79
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=21.71 E-value=59 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.4
Q ss_pred hccCCeEEEEEcCCcEEEEEEEE
Q 033079 17 SYLDKKLLVLLRDGRKLMGTLCS 39 (128)
Q Consensus 17 ~~l~k~V~V~LkdGr~~~G~L~~ 39 (128)
-.+|..|+|.+..|+.+.|+..+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 45788999999999999998765
No 80
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=21.11 E-value=69 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.1
Q ss_pred hhccCCeEEEEEcCCcEEEEEEEE
Q 033079 16 ASYLDKKLLVLLRDGRKLMGTLCS 39 (128)
Q Consensus 16 ~~~l~k~V~V~LkdGr~~~G~L~~ 39 (128)
..+.+++|+|.+++|..|.|++-.
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 457889999999999999998743
Done!