Query 033081
Match_columns 128
No_of_seqs 37 out of 39
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 15:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 51.8 7.7 0.00026 27.8 2.1 19 34-52 42-60 (108)
2 2jya_A AGR_C_3324P, uncharacte 47.1 8.4 0.00029 27.6 1.7 19 34-52 34-52 (106)
3 3eab_A Spastin; spastin, MIT, 45.5 9.5 0.00033 26.6 1.7 17 80-96 62-78 (89)
4 3ui4_A Peptidyl-prolyl CIS-tra 36.9 22 0.00076 23.5 2.4 22 80-101 16-37 (101)
5 1jns_A Peptidyl-prolyl CIS-tra 34.3 27 0.00091 22.3 2.4 21 81-101 13-33 (92)
6 2rqs_A Parvulin-like peptidyl- 34.1 27 0.00091 22.6 2.4 21 81-101 19-39 (97)
7 1zk6_A Foldase protein PRSA; a 33.9 29 0.001 22.0 2.6 21 81-101 14-34 (93)
8 2dl1_A Spartin; SPG20, MIT, st 32.4 20 0.00068 26.1 1.7 19 79-97 67-85 (116)
9 1lgh_B LH II, B800/850, light 30.9 35 0.0012 21.3 2.5 17 78-94 6-22 (45)
10 1nkz_B Light-harvesting protei 30.6 32 0.0011 21.1 2.2 16 79-94 2-17 (41)
11 1j6r_A Methionine synthase; st 28.0 56 0.0019 24.9 3.7 41 81-125 109-149 (214)
12 2kgj_A Peptidyl-prolyl CIS-tra 25.8 48 0.0016 21.8 2.6 21 81-101 15-35 (102)
13 1cbk_A Protein (7,8-dihydro-6- 21.5 24 0.00083 26.2 0.5 24 33-56 37-60 (160)
14 2qx0_A 7,8-dihydro-6-hydroxyme 20.6 27 0.00091 26.0 0.6 24 33-56 37-60 (159)
15 3bya_B Glutamate [NMDA] recept 20.1 37 0.0013 19.3 1.0 15 105-119 7-21 (26)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=51.79 E-value=7.7 Score=27.83 Aligned_cols=19 Identities=21% Similarity=0.594 Sum_probs=16.1
Q ss_pred CCCccccccCCCCCCcccC
Q 033081 34 SSNWWSPLFGWSSEADYID 52 (128)
Q Consensus 34 ~~~WWaPLfGWS~~~DYi~ 52 (128)
..+|=-||.||.+..|.+.
T Consensus 42 ~~r~~nPLMGWtsS~D~~~ 60 (108)
T 2lju_A 42 CTQYTEPLMNWTGSHDTKQ 60 (108)
T ss_dssp SSCCCCCCCCCSSSCCCCC
T ss_pred CCCccCCCccccCCCCccc
Confidence 3578899999999999763
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=47.10 E-value=8.4 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.456 Sum_probs=16.1
Q ss_pred CCCccccccCCCCCCcccC
Q 033081 34 SSNWWSPLFGWSSEADYID 52 (128)
Q Consensus 34 ~~~WWaPLfGWS~~~DYi~ 52 (128)
+.+|=-||.||.+..|.+.
T Consensus 34 ~~rw~nPLMGWtsS~D~~~ 52 (106)
T 2jya_A 34 VPRKIDPIMGYTSSSDMKQ 52 (106)
T ss_dssp CCSCCCTTTCSCSCCCSEE
T ss_pred CCCccCCCcCcCCCCCccc
Confidence 4588999999999999763
No 3
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=45.46 E-value=9.5 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHhhhhh
Q 033081 80 FTEEKAKQLRLMTKDTA 96 (128)
Q Consensus 80 lTEEKAkqLR~~~~ete 96 (128)
-.-|+|+||+.||.+|=
T Consensus 62 ~~we~Ar~LQ~KM~~nL 78 (89)
T 3eab_A 62 EQCERARRLQAKMMTNL 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34689999999999874
No 4
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=36.94 E-value=22 Score=23.52 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHhhhhhhhHHH
Q 033081 80 FTEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 80 lTEEKAkqLR~~~~etesFHD~ 101 (128)
=++++|+++..++...++|-++
T Consensus 16 ~~~~~A~~i~~~l~~G~~F~~l 37 (101)
T 3ui4_A 16 EKHGKIMEAMEKLKSGMRFNEV 37 (101)
T ss_dssp SSHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 3899999999999999999553
No 5
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=34.28 E-value=27 Score=22.31 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhhhhhhhHHH
Q 033081 81 TEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 81 TEEKAkqLR~~~~etesFHD~ 101 (128)
++++|++++.++.+.++|-++
T Consensus 13 ~~~~A~~i~~~l~~g~~F~~l 33 (92)
T 1jns_A 13 EEKLALDLLEQIKNGADFGKL 33 (92)
T ss_dssp SHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988888654
No 6
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=34.09 E-value=27 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHhhhhhhhHHH
Q 033081 81 TEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 81 TEEKAkqLR~~~~etesFHD~ 101 (128)
++++|+++++++.+.++|-++
T Consensus 19 ~~~~A~~i~~~l~~g~~F~~l 39 (97)
T 2rqs_A 19 KQGEALAVQERLKAGEKFGKL 39 (97)
T ss_dssp CHHHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHH
Confidence 799999999999988888664
No 7
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=33.94 E-value=29 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHhhhhhhhHHH
Q 033081 81 TEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 81 TEEKAkqLR~~~~etesFHD~ 101 (128)
++++|.+++.++.+.++|-++
T Consensus 14 ~~~~A~~i~~~l~~g~~F~~l 34 (93)
T 1zk6_A 14 DKKTAEEVEKKLKKGEKFEDL 34 (93)
T ss_dssp SHHHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988899765
No 8
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.42 E-value=20 Score=26.09 Aligned_cols=19 Identities=26% Similarity=0.150 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHhhhhhh
Q 033081 79 CFTEEKAKQLRLMTKDTAS 97 (128)
Q Consensus 79 ~lTEEKAkqLR~~~~etes 97 (128)
+.+-|+|++|+.||.+|-.
T Consensus 67 g~~we~Ar~lq~KM~~nL~ 85 (116)
T 2dl1_A 67 GPGWESARQMQQKMKETLQ 85 (116)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 5788999999999998753
No 9
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=30.86 E-value=35 Score=21.31 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.1
Q ss_pred CcccHHHHHHHHHHhhh
Q 033081 78 GCFTEEKAKQLRLMTKD 94 (128)
Q Consensus 78 G~lTEEKAkqLR~~~~e 94 (128)
-+||+|-|+++.+..+.
T Consensus 6 tGLT~~EA~EfH~~~~~ 22 (45)
T 1lgh_B 6 SGLTEEEAIAVHDQFKT 22 (45)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37999999998887754
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=30.57 E-value=32 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.3
Q ss_pred cccHHHHHHHHHHhhh
Q 033081 79 CFTEEKAKQLRLMTKD 94 (128)
Q Consensus 79 ~lTEEKAkqLR~~~~e 94 (128)
+||+|-|+++.+..+.
T Consensus 2 gLT~~EA~EfH~~~~~ 17 (41)
T 1nkz_B 2 TLTAEQSEELHKYVID 17 (41)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999998887754
No 11
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.30A {Thermotoga maritima} SCOP: d.173.1.2
Probab=28.03 E-value=56 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhcccchhhhhh
Q 033081 81 TEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDFKIRSDRELET 125 (128)
Q Consensus 81 TEEKAkqLR~~~~etesFHD~MYHSAIASRLAsd~~~r~e~~~~~ 125 (128)
-+|+++++ ..+....+-+|+| |+|+|||-.+-....+++.+
T Consensus 109 id~~~~~~---~~~~d~y~ai~l~-ala~~laEa~aE~~h~~Ir~ 149 (214)
T 1j6r_A 109 VDEKIEEY---FRKGEDLLAFFID-GIASEMVEYALRKVDAELRM 149 (214)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35666666 3455667777776 59999999988777666654
No 12
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=25.79 E-value=48 Score=21.82 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhhhhhhhHHH
Q 033081 81 TEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 81 TEEKAkqLR~~~~etesFHD~ 101 (128)
+++||++++.++.+.++|=++
T Consensus 15 ~~~~A~~i~~~l~~G~~F~~l 35 (102)
T 2kgj_A 15 TEDEAKAVLDELNKGGDFAAL 35 (102)
T ss_dssp SHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHH
Confidence 689999999999988888654
No 13
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=21.54 E-value=24 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.0
Q ss_pred CCCCccccccCCCCCCcccCCCCC
Q 033081 33 ASSNWWSPLFGWSSEADYIDSESK 56 (128)
Q Consensus 33 ~~~~WWaPLfGWS~~~DYi~~~~~ 56 (128)
.|+-++++-+|..+++||+|+-..
T Consensus 37 ~S~~y~T~P~G~~~q~~FlN~v~~ 60 (160)
T 1cbk_A 37 TSSFYKSKPLGPQDQPDYVNAVAK 60 (160)
T ss_dssp ECCCEEECCSSCSSSCCEEEEEEE
T ss_pred ecccEEeCCCCCCCCCCceEEEEE
Confidence 366899999999999999998543
No 14
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=20.62 E-value=27 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.0
Q ss_pred CCCCccccccCCCCCCcccCCCCC
Q 033081 33 ASSNWWSPLFGWSSEADYIDSESK 56 (128)
Q Consensus 33 ~~~~WWaPLfGWS~~~DYi~~~~~ 56 (128)
.|+-++++-+|..++|||+|+-..
T Consensus 37 ~S~~y~T~P~g~~~q~~FlN~v~~ 60 (159)
T 2qx0_A 37 CSPLYRTKPLGPQDQPDFLNAVVA 60 (159)
T ss_dssp ECCCEEECCCSSSCCCCEEEEEEE
T ss_pred ecCcEEeCCCCCCCCcccceEEEE
Confidence 366899999999999999998543
No 15
>3bya_B Glutamate [NMDA] receptor subunit zeta-1 peptide; calmodulin, EF hand motif, NR1, N-methyl-D-aspartate recepto glutamate, central nervous system; 1.85A {Homo sapiens} PDB: 2hqw_B
Probab=20.12 E-value=37 Score=19.31 Aligned_cols=15 Identities=60% Similarity=0.671 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhcccc
Q 033081 105 SAIASRLASDFKIRS 119 (128)
Q Consensus 105 SAIASRLAsd~~~r~ 119 (128)
-+|-+-|||.|+.|-
T Consensus 7 r~istslass~krrr 21 (26)
T 3bya_B 7 RAITSTLASSFKRRR 21 (26)
T ss_pred HHHHHHHHHHHHHhh
Confidence 378899999997653
Done!