Query 033081
Match_columns 128
No_of_seqs 37 out of 39
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 15:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 39.8 12 0.0009 21.3 2.9 24 79-102 5-28 (47)
2 d1w07a2 a.29.3.2 (A:462-659) A 25.8 6.9 0.0005 27.2 0.0 32 78-109 114-159 (198)
3 d1jnsa_ d.26.1.1 (A:) Parvulin 25.6 21 0.0016 21.6 2.4 22 80-101 12-33 (92)
4 d2ddha2 a.29.3.2 (A:475-655) P 21.3 11 0.00081 25.8 0.4 32 78-109 104-149 (181)
5 d1lghb_ f.3.1.1 (B:) Light-har 20.9 29 0.0021 20.1 2.2 17 79-95 5-21 (43)
6 d1eq3a_ d.26.1.1 (A:) Parvulin 19.0 15 0.0011 22.9 0.6 22 80-101 11-32 (96)
7 d1gpma3 d.52.2.1 (A:405-525) G 18.5 30 0.0022 23.3 2.2 16 76-91 8-23 (121)
8 d1jo5a_ f.3.1.1 (A:) Light-har 17.8 30 0.0022 20.5 1.8 18 78-95 9-26 (48)
9 d2fug41 e.18.1.2 (4:35-409) NA 16.2 45 0.0032 23.6 2.8 29 78-106 72-100 (375)
10 d2fufa1 d.89.1.1 (A:131-256) T 15.9 34 0.0025 23.7 2.0 15 80-94 33-47 (126)
No 1
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=39.76 E-value=12 Score=21.35 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHhhhhhhhHHHH
Q 033081 79 CFTEEKAKQLRLMTKDTASFHDAM 102 (128)
Q Consensus 79 ~lTEEKAkqLR~~~~etesFHD~M 102 (128)
.||+|+-.+.|+++...++-+++.
T Consensus 5 ~lt~~q~~~a~~l~~~G~s~~~iA 28 (47)
T d1ijwc_ 5 AINKHEQEQISRLLEKGHPRQQLA 28 (47)
T ss_dssp SSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHCCCCHHHHH
Confidence 599999999999999888876653
No 2
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.78 E-value=6.9 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHh--------------hhhhhhHHHHHHHHHHH
Q 033081 78 GCFTEEKAKQLRLMT--------------KDTASFHDAMYHSAIAS 109 (128)
Q Consensus 78 G~lTEEKAkqLR~~~--------------~etesFHD~MYHSAIAS 109 (128)
|.+|.+++++||... +++=.|+|.+.+|+|++
T Consensus 114 ~~ls~~q~~~l~~~i~~L~~~Lrp~Av~LVDAF~~pD~~L~SaLG~ 159 (198)
T d1w07a2 114 NCITPKQASLANDQLRSLYTQVRPNAVALVDAFNYTDHYLNSVLGR 159 (198)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHhccHhhc
Confidence 789999999998764 56667899999999975
No 3
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=25.65 E-value=21 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHhhhhhhhHHH
Q 033081 80 FTEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 80 lTEEKAkqLR~~~~etesFHD~ 101 (128)
=++++|+.++.++...++|-++
T Consensus 12 ~~~~~A~~i~~~l~~g~~F~~l 33 (92)
T d1jnsa_ 12 KEEKLALDLLEQIKNGADFGKL 33 (92)
T ss_dssp SSHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 4799999999999988888653
No 4
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.25 E-value=11 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHH--------------hhhhhhhHHHHHHHHHHH
Q 033081 78 GCFTEEKAKQLRLM--------------TKDTASFHDAMYHSAIAS 109 (128)
Q Consensus 78 G~lTEEKAkqLR~~--------------~~etesFHD~MYHSAIAS 109 (128)
|.+|.+++++||.. ++++=.|+|-+.+|+|+.
T Consensus 104 g~ls~~q~~~i~~~i~~L~~~lrp~Av~LVDaF~~~D~~L~S~lG~ 149 (181)
T d2ddha2 104 SIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGR 149 (181)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCHHHHccHHhc
Confidence 78999999999965 356667899999999864
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=20.86 E-value=29 Score=20.14 Aligned_cols=17 Identities=35% Similarity=0.235 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHhhhh
Q 033081 79 CFTEEKAKQLRLMTKDT 95 (128)
Q Consensus 79 ~lTEEKAkqLR~~~~et 95 (128)
+||+|-|+++.+--+.+
T Consensus 5 GLT~~EA~EfH~~~~~g 21 (43)
T d1lghb_ 5 GLTEEEAIAVHDQFKTT 21 (43)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 79999999988776543
No 6
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=19.02 E-value=15 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHhhhhhhhHHH
Q 033081 80 FTEEKAKQLRLMTKDTASFHDA 101 (128)
Q Consensus 80 lTEEKAkqLR~~~~etesFHD~ 101 (128)
-|++||+.++.++..-++|-++
T Consensus 11 ~~~~~a~~i~~~i~~g~~F~~l 32 (96)
T d1eq3a_ 11 EKHGKIMEAMEKLKSGMRFNEV 32 (96)
T ss_dssp CCCSTHHHHHHHHTTTTSHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHH
Confidence 4788999999999999998664
No 7
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=18.55 E-value=30 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.8
Q ss_pred CCCcccHHHHHHHHHH
Q 033081 76 SPGCFTEEKAKQLRLM 91 (128)
Q Consensus 76 ~~G~lTEEKAkqLR~~ 91 (128)
+.|-+|+||-..||.-
T Consensus 8 i~GevT~ekl~ilReA 23 (121)
T d1gpma3 8 VLGEVKKEYCDLLRRA 23 (121)
T ss_dssp BCSSCCHHHHHHHHHH
T ss_pred EcCcCCHHHHHHHHHC
Confidence 3499999999999974
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.78 E-value=30 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.7
Q ss_pred CcccHHHHHHHHHHhhhh
Q 033081 78 GCFTEEKAKQLRLMTKDT 95 (128)
Q Consensus 78 G~lTEEKAkqLR~~~~et 95 (128)
-+||+|-|+++.+..+.+
T Consensus 9 tGLT~~EA~E~H~~~~~g 26 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSG 26 (48)
T ss_dssp GGGHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 379999999999877643
No 9
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]}
Probab=16.22 E-value=45 Score=23.59 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHhhhhhhhHHHHHHHH
Q 033081 78 GCFTEEKAKQLRLMTKDTASFHDAMYHSA 106 (128)
Q Consensus 78 G~lTEEKAkqLR~~~~etesFHD~MYHSA 106 (128)
|.-..++|+.||.-|.+.+-.|+=+.|-.
T Consensus 72 gv~~p~~a~~lR~l~~~~e~i~sH~l~~~ 100 (375)
T d2fug41 72 GAVVPPRAETIRVILNELSRLASHLVFLG 100 (375)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67788999999999999999998887754
No 10
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=15.88 E-value=34 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.182 Sum_probs=13.4
Q ss_pred ccHHHHHHHHHHhhh
Q 033081 80 FTEEKAKQLRLMTKD 94 (128)
Q Consensus 80 lTEEKAkqLR~~~~e 94 (128)
=|-||++||..+++|
T Consensus 33 TT~eK~~~Ly~kl~e 47 (126)
T d2fufa1 33 TTKEKAALLYKKIME 47 (126)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHH
Confidence 389999999999976
Done!