Query 033083
Match_columns 128
No_of_seqs 139 out of 370
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 9.2E-46 3.1E-50 276.7 6.0 79 49-127 28-106 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 1.8E-45 6.1E-50 274.2 6.2 79 49-127 25-103 (123)
3 2jss_A Chimera of histone H2B. 100.0 3.7E-33 1.3E-37 217.5 8.4 73 55-127 1-73 (192)
4 3b0c_W CENP-W, centromere prot 99.7 1.5E-17 5E-22 112.6 6.7 65 60-124 7-71 (76)
5 1b67_A Protein (histone HMFA); 99.1 1.7E-10 5.7E-15 75.6 5.9 60 63-123 8-67 (68)
6 1f1e_A Histone fold protein; a 98.6 5.5E-08 1.9E-12 74.2 6.7 63 63-126 88-150 (154)
7 2yfw_B Histone H4, H4; cell cy 98.3 1.7E-06 5.8E-11 61.3 6.5 63 60-123 32-94 (103)
8 1tzy_D Histone H4-VI; histone- 98.3 2E-06 6.8E-11 60.8 6.4 63 60-123 32-94 (103)
9 1ku5_A HPHA, archaeal histon; 98.1 4.6E-06 1.6E-10 54.8 5.9 59 62-121 11-69 (70)
10 1n1j_A NF-YB; histone-like PAI 98.1 1.1E-05 3.9E-10 55.5 7.7 61 62-122 13-74 (93)
11 1id3_B Histone H4; nucleosome 98.0 1.4E-05 4.9E-10 56.7 6.4 63 60-123 31-93 (102)
12 1jfi_B DR1 protein, transcript 97.9 4.1E-05 1.4E-09 59.6 8.0 62 61-122 19-80 (179)
13 2byk_B Chrac-14; nucleosome sl 97.9 4.8E-05 1.6E-09 55.9 7.8 61 63-123 15-76 (128)
14 2hue_C Histone H4; mini beta s 97.9 2.1E-05 7.3E-10 53.7 5.2 62 61-123 14-75 (84)
15 3b0c_T CENP-T, centromere prot 97.8 4.2E-05 1.4E-09 55.0 6.2 61 61-122 11-71 (111)
16 2nqb_C Histone H2A; nucleosome 97.7 9.2E-05 3.1E-09 54.3 6.7 62 60-121 26-87 (123)
17 2f8n_G Core histone macro-H2A. 97.7 9.9E-05 3.4E-09 53.9 6.5 61 61-121 26-86 (120)
18 1id3_C Histone H2A.1; nucleoso 97.6 0.0001 3.4E-09 54.7 6.3 62 60-121 28-89 (131)
19 1tzy_A Histone H2A-IV; histone 97.6 0.00012 4E-09 54.2 6.6 61 61-121 29-89 (129)
20 1n1j_B NF-YC; histone-like PAI 97.6 0.00015 5.2E-09 50.5 6.4 59 62-121 24-83 (97)
21 1f1e_A Histone fold protein; a 97.6 0.00015 5.3E-09 55.1 6.7 60 63-122 10-69 (154)
22 2f8n_K Histone H2A type 1; nuc 97.6 0.00017 5.7E-09 54.8 6.5 61 61-121 48-108 (149)
23 4g92_C HAPE; transcription fac 97.6 0.00015 5E-09 52.5 5.9 59 62-121 46-105 (119)
24 1taf_B TFIID TBP associated fa 97.5 0.00039 1.4E-08 46.8 7.1 60 62-122 11-70 (70)
25 1h3o_B Transcription initiatio 97.5 0.00042 1.4E-08 47.4 7.0 59 63-121 11-69 (76)
26 1f66_C Histone H2A.Z; nucleoso 97.4 0.00028 9.5E-09 52.1 6.4 61 61-121 31-92 (128)
27 1jfi_A Transcription regulator 97.3 0.00024 8.1E-09 49.8 4.7 60 61-121 15-75 (98)
28 2jss_A Chimera of histone H2B. 97.2 0.001 3.5E-08 51.4 7.2 61 61-121 109-170 (192)
29 1taf_A TFIID TBP associated fa 97.1 0.0028 9.7E-08 42.3 8.0 63 61-124 5-67 (68)
30 4dra_A Centromere protein S; D 97.1 0.00068 2.3E-08 49.6 4.9 60 62-121 32-93 (113)
31 2byk_A Chrac-16; nucleosome sl 97.1 0.00089 3E-08 50.0 5.6 59 62-121 24-84 (140)
32 2hue_B Histone H3; mini beta s 97.1 0.0023 7.9E-08 43.7 7.2 66 57-122 7-72 (77)
33 3v9r_A MHF1, uncharacterized p 97.0 0.0016 5.6E-08 45.6 6.0 59 63-121 18-78 (90)
34 3b0b_B CENP-S, centromere prot 96.9 0.00096 3.3E-08 48.1 4.3 62 61-122 23-86 (107)
35 1tzy_C Histone H3; histone-fol 96.7 0.0054 1.8E-07 45.9 7.2 65 58-122 67-131 (136)
36 3vh5_A CENP-S; histone fold, c 96.7 0.002 6.9E-08 48.7 4.9 59 63-121 25-85 (140)
37 3nqj_A Histone H3-like centrom 96.7 0.0085 2.9E-07 41.4 7.6 67 57-123 7-75 (82)
38 2yfv_A Histone H3-like centrom 96.6 0.0064 2.2E-07 43.3 6.7 67 56-122 30-99 (100)
39 2ly8_A Budding yeast chaperone 96.5 0.006 2.1E-07 44.9 6.1 47 76-122 65-111 (121)
40 3nqu_A Histone H3-like centrom 96.0 0.02 6.9E-07 43.1 7.0 52 72-123 82-133 (140)
41 3r45_A Histone H3-like centrom 95.9 0.02 6.8E-07 43.9 6.7 50 73-122 99-148 (156)
42 2l5a_A Histone H3-like centrom 95.5 0.032 1.1E-06 45.2 6.7 48 75-122 178-225 (235)
43 3ksy_A SOS-1, SON of sevenless 94.1 0.13 4.3E-06 47.9 7.5 62 56-127 20-81 (1049)
44 1bh9_B TAFII28; histone fold, 90.1 2.3 8E-05 29.2 8.3 61 63-124 22-83 (89)
45 2l5a_A Histone H3-like centrom 83.4 3 0.0001 33.7 6.5 68 55-122 13-83 (235)
46 2krk_A 26S protease regulatory 81.5 1.8 6.3E-05 28.6 4.0 43 86-128 44-86 (86)
47 3aji_B S6C, proteasome (prosom 80.7 2.8 9.5E-05 26.7 4.6 42 86-127 34-75 (83)
48 3ksy_A SOS-1, SON of sevenless 80.2 4.2 0.00014 37.8 7.2 60 61-121 108-167 (1049)
49 3vlf_B 26S protease regulatory 78.7 2.6 9E-05 27.6 4.0 41 87-127 35-75 (88)
50 4dra_E Centromere protein X; D 78.6 11 0.00037 25.8 7.2 58 61-122 16-79 (84)
51 3kw6_A 26S protease regulatory 77.4 2.5 8.6E-05 26.7 3.5 42 87-128 37-78 (78)
52 3b0b_C CENP-X, centromere prot 77.2 8.8 0.0003 26.0 6.4 57 61-121 12-74 (81)
53 3f9v_A Minichromosome maintena 76.8 3.1 0.00011 36.1 5.0 65 58-124 506-588 (595)
54 2dzn_B 26S protease regulatory 76.8 2.8 9.7E-05 26.9 3.7 40 87-126 32-71 (82)
55 1g8p_A Magnesium-chelatase 38 71.5 9.9 0.00034 28.8 6.1 55 71-125 263-324 (350)
56 1lv7_A FTSH; alpha/beta domain 58.3 15 0.00052 26.9 4.8 35 92-126 221-255 (257)
57 2i5u_A DNAD domain protein; st 57.7 24 0.00083 22.9 5.2 48 61-109 2-58 (83)
58 3k1j_A LON protease, ATP-depen 55.8 57 0.002 27.8 8.6 64 59-122 295-374 (604)
59 2r44_A Uncharacterized protein 53.7 32 0.0011 26.2 6.0 33 94-126 268-300 (331)
60 3h4m_A Proteasome-activating n 51.0 24 0.00081 26.1 4.8 35 91-125 226-260 (285)
61 2v1u_A Cell division control p 48.1 85 0.0029 23.5 8.3 67 57-123 204-276 (387)
62 2dn9_A DNAJ homolog subfamily 47.5 28 0.00096 21.8 4.1 39 62-101 27-66 (79)
63 3ctv_A HBD-10, 3-hydroxyacyl-C 47.5 30 0.001 23.2 4.6 35 86-123 18-52 (110)
64 3v9r_B MHF2, uncharacterized p 45.6 28 0.00096 24.2 4.1 62 63-124 7-77 (88)
65 3uk6_A RUVB-like 2; hexameric 44.3 1E+02 0.0035 23.4 8.5 66 58-125 263-332 (368)
66 2cug_A Mkiaa0962 protein; DNAJ 40.3 43 0.0015 21.5 4.3 39 62-101 37-75 (88)
67 1jr3_D DNA polymerase III, del 39.9 31 0.0011 26.5 4.1 64 57-122 145-208 (343)
68 4b4t_M 26S protease regulatory 39.0 28 0.00097 29.4 4.0 42 87-128 386-427 (434)
69 2ctp_A DNAJ homolog subfamily 38.7 39 0.0013 21.1 3.8 36 63-99 28-63 (78)
70 2qby_A CDC6 homolog 1, cell di 38.1 1.2E+02 0.0042 22.5 8.7 65 59-123 202-272 (386)
71 4b4t_J 26S protease regulatory 37.8 18 0.00061 30.6 2.5 40 87-126 353-392 (405)
72 4b4t_I 26S protease regulatory 37.1 20 0.00067 30.8 2.7 41 86-126 386-426 (437)
73 1wwi_A Hypothetical protein TT 36.1 57 0.0019 24.5 4.8 53 63-116 8-60 (148)
74 2dhr_A FTSH; AAA+ protein, hex 35.0 46 0.0016 28.5 4.7 35 92-126 240-274 (499)
75 2ctr_A DNAJ homolog subfamily 34.6 46 0.0016 21.4 3.7 36 63-99 28-63 (88)
76 3f8t_A Predicted ATPase involv 33.5 1.1E+02 0.0039 26.8 7.0 26 99-124 459-484 (506)
77 3sjr_A Uncharacterized protein 33.2 29 0.001 26.8 2.9 47 53-103 94-143 (175)
78 2qz4_A Paraplegin; AAA+, SPG7, 32.9 20 0.0007 25.8 1.9 36 91-126 217-252 (262)
79 1u5t_A Appears to BE functiona 32.5 86 0.0029 24.7 5.6 68 55-125 56-143 (233)
80 3iz6_S 40S ribosomal protein S 32.1 50 0.0017 24.7 3.9 39 58-96 98-146 (146)
81 2yua_A Williams-beuren syndrom 31.5 41 0.0014 22.2 3.1 38 63-101 38-76 (99)
82 2dmx_A DNAJ homolog subfamily 31.3 77 0.0026 20.3 4.4 39 62-101 29-69 (92)
83 1hdj_A Human HSP40, HDJ-1; mol 30.8 47 0.0016 20.6 3.2 36 62-98 23-58 (77)
84 4b4t_H 26S protease regulatory 30.5 27 0.00092 30.2 2.5 40 87-126 414-453 (467)
85 2hgc_A YJCQ protein; SR346, st 30.3 15 0.00052 25.8 0.8 39 60-98 4-43 (102)
86 4b4t_L 26S protease subunit RP 30.1 51 0.0017 27.9 4.1 40 87-126 386-425 (437)
87 1fnn_A CDC6P, cell division co 29.1 1.8E+02 0.0063 21.8 7.6 68 58-125 197-276 (389)
88 2chg_A Replication factor C sm 29.1 1.3E+02 0.0045 20.1 6.1 59 59-121 166-224 (226)
89 3mse_B Calcium-dependent prote 28.9 1.4E+02 0.0047 20.2 5.6 27 97-123 42-68 (180)
90 4b4t_K 26S protease regulatory 28.0 83 0.0028 26.4 5.1 41 86-126 377-417 (428)
91 3mn5_S Protein spire, actin, a 27.6 13 0.00043 22.2 -0.0 11 63-73 26-36 (38)
92 2ys8_A RAB-related GTP-binding 27.2 90 0.0031 20.2 4.2 18 63-80 48-65 (90)
93 2rp5_A Putative uncharacterize 26.9 7.4 0.00025 28.9 -1.4 33 89-122 102-134 (136)
94 2ce7_A Cell division protein F 26.9 73 0.0025 27.0 4.5 35 92-126 225-259 (476)
95 1faf_A Large T antigen; J doma 26.7 83 0.0028 20.0 3.9 35 63-101 34-68 (79)
96 1njg_A DNA polymerase III subu 26.4 1.1E+02 0.0037 20.7 4.6 61 58-121 189-249 (250)
97 2guz_A Mitochondrial import in 26.1 65 0.0022 20.0 3.2 16 63-78 36-51 (71)
98 2ctq_A DNAJ homolog subfamily 25.8 84 0.0029 21.1 4.0 38 63-101 41-79 (112)
99 2kz2_A Calmodulin, CAM; TR2C, 25.7 58 0.002 20.3 3.0 27 97-123 32-58 (94)
100 3cuq_A Vacuolar-sorting protei 25.2 1.1E+02 0.0037 24.2 5.0 68 56-125 37-129 (234)
101 2qby_B CDC6 homolog 3, cell di 23.8 2.4E+02 0.008 21.3 7.3 65 57-123 200-270 (384)
102 2ctw_A DNAJ homolog subfamily 23.4 93 0.0032 20.8 3.8 39 62-101 37-76 (109)
103 1i1q_B Anthranilate synthase c 22.7 53 0.0018 23.5 2.6 22 68-89 166-187 (192)
104 1eg3_A Dystrophin; EF-hand lik 22.6 87 0.003 24.8 4.0 45 82-126 103-164 (261)
105 1d6g_A CCK-A-receptor, cholecy 22.0 21 0.0007 22.3 0.2 13 112-124 35-47 (47)
106 2ej7_A HCG3 gene; HCG3 protein 21.8 68 0.0023 20.0 2.7 17 62-78 29-45 (82)
107 1r4v_A Hypothetical protein AQ 21.2 61 0.0021 24.9 2.7 54 62-116 31-84 (171)
108 3u5c_T 40S ribosomal protein S 20.6 97 0.0033 23.0 3.7 36 59-94 97-142 (144)
109 1iur_A KIAA0730 protein; DNAJ 20.0 1.4E+02 0.0049 19.5 4.1 39 62-101 36-76 (88)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=9.2e-46 Score=276.68 Aligned_cols=79 Identities=76% Similarity=1.110 Sum_probs=72.5
Q ss_pred cccccccchhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 49 KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 49 kk~~kkr~esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
++++++|.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||||||||||||
T Consensus 28 ~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 28 KKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp ------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred CCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=1.8e-45 Score=274.19 Aligned_cols=79 Identities=73% Similarity=1.078 Sum_probs=74.0
Q ss_pred cccccccchhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 49 KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 49 kk~~kkr~esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
++++++|.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||||
T Consensus 25 ~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 25 KKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp ----CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred CCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.98 E-value=3.7e-33 Score=217.50 Aligned_cols=73 Identities=68% Similarity=1.042 Sum_probs=71.6
Q ss_pred cchhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 55 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 55 r~esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
|+|+|++||||||||||||++||++||++|||||+|||+||+.||++|++||+++|||+||||+||||+||||
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpge 73 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGE 73 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999996
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.71 E-value=1.5e-17 Score=112.60 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=63.1
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhc
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlL 124 (128)
..+|+|++||+|||.+||.+|+.+|+.+++++|++|+.||+.+|++++|.||+.+||++|++.+|
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999987
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.09 E-value=1.7e-10 Score=75.59 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=57.8
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
|.|++|++ ++..||+.|+..|..++.++++.|+.+|..++.+++|.||+.+|||.|++.|
T Consensus 8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 78999999 8899999999999999999999999999999999999999999999999875
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.64 E-value=5.5e-08 Score=74.18 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=60.6
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
|.|++|+. ....||+.|...|..++.++.+.|+.+|..++++.+|+||+.+||+.|++..||.
T Consensus 88 V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 88 VRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 89999998 6778999999999999999999999999999999999999999999999999983
No 7
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.28 E-value=1.7e-06 Score=61.28 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
...|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|.|||.+||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 32 KPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3568999999876 58999999999999999999999999999999999999999999999865
No 8
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.26 E-value=2e-06 Score=60.83 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
...|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|.|||.+||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4569999999876 58999999999999999999999999999999999999999999999965
No 9
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.14 E-value=4.6e-06 Score=54.80 Aligned_cols=59 Identities=15% Similarity=0.337 Sum_probs=54.9
Q ss_pred HHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 62 YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
-|.|++|.. ....||+.+..-+..++.++++.|+.+|..++++.+|.||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 478999986 46789999999999999999999999999999999999999999999985
No 10
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.11 E-value=1.1e-05 Score=55.49 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=56.9
Q ss_pred HHHHHhhhccCC-CCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 62 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 62 YIyKVLKQVhPd-~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
=|.|+.|.+-|| ..||+.|...|......+...|+.+|..++...+|.||+..||+.|++-
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 488999999776 6799999999999999999999999999999999999999999999973
No 11
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.99 E-value=1.4e-05 Score=56.72 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
.-.|.|+++..-. ..||..+...|..++.++++.|+.||..++++.+|.|||..||-.|++.+
T Consensus 31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4568999998743 66999999999999999999999999999999999999999999999865
No 12
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.89 E-value=4.1e-05 Score=59.64 Aligned_cols=62 Identities=18% Similarity=0.330 Sum_probs=58.6
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
.=|.|++|.+-|+..||..|...|...+..+..-|+.||..+|...+|+||+..||-.|+.-
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 44899999999988999999999999999999999999999999999999999999999874
No 13
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.88 E-value=4.8e-05 Score=55.90 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=56.7
Q ss_pred HHHHhhhccCC-CCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 63 IFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 63 IyKVLKQVhPd-~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
|.|++|++-|| ..||..|...|.-...-+...|+.+|..++...+|+||+..||..||.-+
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 88999998886 56999999999999999999999999999999999999999999999753
No 14
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.86 E-value=2.1e-05 Score=53.67 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
-.|.|+++..-. ..||..+..-+..++...++.|+.+|..++++.+|+|||..||-.|++-+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 458899998754 66999999999999999999999999999999999999999999998754
No 15
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.81 E-value=4.2e-05 Score=55.00 Aligned_cols=61 Identities=10% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
..|.|+.+.. ....||..+...|..++.++++.|+.+|..++++.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4688888876 678899999999999999999999999999999999999999999999874
No 16
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.69 E-value=9.2e-05 Score=54.27 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=56.6
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
-..|+|+|++..---.||+.|.-.|-..+..+...|.+.|...++.+++.+|++|+||-||+
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 35799999997444589999999999999999999999999999999999999999999998
No 17
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.67 E-value=9.9e-05 Score=53.90 Aligned_cols=61 Identities=28% Similarity=0.295 Sum_probs=56.3
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
..|+|+|+...---.||..|--.|-..+..+...|.+.|.+.++.+++.+|++|+||-||+
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5799999998655679999999999999999999999999999999999999999999998
No 18
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.65 E-value=0.0001 Score=54.66 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=56.4
Q ss_pred HHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 60 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 60 s~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
-..|+|+|+...---.||..|.-.|-..+..+...|...|...++.+++.+|++|+||-||+
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 35799999996444489999999999999999999999999999999999999999999998
No 19
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.64 E-value=0.00012 Score=54.17 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
..|+|+|++..---.||+.|--.|-..+..+...|.+.|.+.++.+++.+|++|+||-||+
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5799999997444589999999999999999999999999999999999999999999998
No 20
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.61 E-value=0.00015 Score=50.51 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=53.7
Q ss_pred HHHHHhhhccCCC-CcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 62 YIFKVLKQVHPDI-GISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 62 YIyKVLKQVhPd~-gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
=|.|++|.- ||. .||..|--.|.-..-.+...|+.+|...++.++|.||+.+||+.||+
T Consensus 24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 388999986 775 49999999999888889999999999999999999999999999986
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.58 E-value=0.00015 Score=55.10 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=57.0
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
|-|++|+.-|+..||..|-.-+...+..+.+-|+.+|..++.+.+|+||+..||..|+.-
T Consensus 10 V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 10 IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 789999988999999999999999999999999999999999999999999999999853
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.56 E-value=0.00017 Score=54.80 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=56.1
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
..|+|+||...---.||..|.-.|-..+..+...|.+.|...++.+++.+|++|+||-||+
T Consensus 48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 5799999997545589999999999999999999999999999999999999999999998
No 23
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.55 E-value=0.00015 Score=52.52 Aligned_cols=59 Identities=27% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHHHhhhccCCC-CcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 62 YIFKVLKQVHPDI-GISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 62 YIyKVLKQVhPd~-gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
=|.|++|.. ||. .||..|.-+|.-.+--+...|+.+|...|+.++|+||+.+||+.||+
T Consensus 46 RIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 46 RIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 389999976 665 58999988888888888899999999999999999999999999996
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.50 E-value=0.00039 Score=46.76 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=52.4
Q ss_pred HHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 62 YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
.|.++.+++.= ..+|..+-..|-.-|......|+.||.+++++.+|.|||..||..|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 46777777742 3689999999999999999999999999999999999999999999874
No 25
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.47 E-value=0.00042 Score=47.39 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=55.3
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
+...++||-|...|...+..+|-.+.+|+.+.+..-|.+||.+.+-.||..+|||-...
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999997654
No 26
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.45 E-value=0.00028 Score=52.06 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHHHHhhhccC-CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhP-d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
..|+|+|+...- ...||+.|.-.|-..+..+...|.+.|...++.+++.+|++|+||-||+
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 479999998763 3479999999999999999999999999999999999999999999998
No 27
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.34 E-value=0.00024 Score=49.76 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=50.2
Q ss_pred HHHHHHhhhccCC-CCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhPd-~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
.=|.|++|. .|| ..||..|--.|.-..-.+.+.|+.+|...++.+++.||+.+||+.||+
T Consensus 15 aRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 15 ARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 348899997 566 559999999988888888899999999999999999999999999986
No 28
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.19 E-value=0.001 Score=51.42 Aligned_cols=61 Identities=25% Similarity=0.223 Sum_probs=55.2
Q ss_pred HHHHHHhhhccC-CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhP-d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
..|+|.||...- ...||..|.--|-..+..+...|.+.|...++.+++.+|++|+||-||+
T Consensus 109 ~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 109 GRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp HHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 579999999743 3579999999999999999999999999999999999999999999998
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.13 E-value=0.0028 Score=42.27 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhc
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVL 124 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlL 124 (128)
..|.++||.-.= ...|..+..-|--|+...-..|+.+|..++.+.+|.||+..||+-|++..+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 457888887532 367899999999999999999999999999999999999999999998653
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.08 E-value=0.00068 Score=49.56 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=53.8
Q ss_pred HHHHHhhhccC--CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 62 YIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 62 YIyKVLKQVhP--d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
.|.|+++++-. ++.+|..++..|.-|+.+.++.|+.++..+|+..+|+||+..||.-++|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 36777777743 5679999999999999999999999999999999999999999998876
No 31
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.07 E-value=0.00089 Score=49.96 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHhhhccCCCC-cchhhHHHHHhHHHHHHHHHHHHHhhHH-hhCCCCCCChhHHHHHHH
Q 033083 62 YIFKVLKQVHPDIG-ISSKAMGIMNSFINDIFEKLAQEASRLA-RYNKKPTITSREIQTAVR 121 (128)
Q Consensus 62 YIyKVLKQVhPd~g-ISskAM~IMnSfVnDiFErIA~EAs~La-~~nkk~TltsREIQtAVR 121 (128)
=|.|++|.- |+.+ ||..|.-+|.-.+--+...|+.+|...+ +.++|.||+.++|..||+
T Consensus 24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 388888885 8855 8888888888877777888999999999 999999999999999997
No 32
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.07 E-value=0.0023 Score=43.73 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=56.5
Q ss_pred hhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 57 esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
-.|...+..+..+...|..+++.|+..|.-...+....|..++..++.+.+|.||..+|||-|.|+
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 345566666666666789999999999998888888888899999999999999999999999985
No 33
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0016 Score=45.58 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=51.6
Q ss_pred HHHHhhhccC--CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 63 IFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 63 IyKVLKQVhP--d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
+-++..++-+ +..+|..++.-|--|+.+.++.|+.++..+|++.+|+||+..||.-++|
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4555566644 3569999999999999999999999999999999999999999998876
No 34
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.90 E-value=0.00096 Score=48.10 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=54.2
Q ss_pred HHHHHHhhhccC--CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 61 IYIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 61 ~YIyKVLKQVhP--d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
..|-|+++.+-- +..+|..++..|.-|+.+.++.|+.++..++++.+|+||+..||--|+|-
T Consensus 23 ~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 23 YTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 346677777643 46799999999999999999999999999999999999999999988763
No 35
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.70 E-value=0.0054 Score=45.90 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 58 sys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
-|...|..+..+...|..+++.|+..|.-...+.+..|..++..++.+.+|.||..+|||-|.|+
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 34444555555556789999999999998888888888899999999999999999999999986
No 36
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.69 E-value=0.002 Score=48.65 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=51.9
Q ss_pred HHHHhhhcc--CCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 63 IFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 63 IyKVLKQVh--Pd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
|-++.+++- .++.+|..++..|--|+.+.|+.|+.++..++++-+|.||+..||.-++|
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 445555552 35779999999999999999999999999999999999999999999887
No 37
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0085 Score=41.37 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhhcc--CCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 57 ETYKIYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 57 esys~YIyKVLKQVh--Pd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
-.|...+..+..+.. -|..+++.|+..|---..+..-.+.+++..++.+.+|.||..+|||-|.|+-
T Consensus 7 lPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 7 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 345555555555544 3678999999999988888888888899999999999999999999999973
No 38
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.59 E-value=0.0064 Score=43.29 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=55.0
Q ss_pred chhhHHHHHHHhhhccC---CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 56 IETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 56 ~esys~YIyKVLKQVhP---d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
+-.|...+..+..+..+ |..+++.|+..|.-...+..-.+..++..++.+.+|.||..+|||-|.|+
T Consensus 30 k~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 30 RMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 44566666666666555 78899999999988888888888889999999999999999999999885
No 39
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.006 Score=44.86 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=45.1
Q ss_pred cchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 76 ISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 76 ISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||--|++.
T Consensus 65 IS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 65 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999874
No 40
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.04 E-value=0.02 Score=43.10 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=46.2
Q ss_pred CCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 72 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 72 Pd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
-|..+++.|+..|--...+.+-.|.+++..++.+.++.||..+|||-|.||-
T Consensus 82 ~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 82 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 3678999999999888888888888899999999999999999999999873
No 41
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=95.93 E-value=0.02 Score=43.92 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 73 DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 73 d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
|..+++.|+..|--...+++-.|.++|..++.+.+|.||..+|||-|.||
T Consensus 99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 56799999999888888888888889999999999999999999999987
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.032 Score=45.16 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=45.8
Q ss_pred CcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 75 GISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 75 gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
.||..+..-+...+.++++.|+.+|..++.+.+|+|+|+.||--|++.
T Consensus 178 RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 178 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 399999999999999999999999999999999999999999999874
No 43
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=94.05 E-value=0.13 Score=47.85 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=52.4
Q ss_pred chhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 56 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 56 ~esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
..-|-.-|+|||.||||++.|.-.|..-+++++--++-.|+. ....|..|+...|.-.+|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 81 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHP 81 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCc
Confidence 456788899999999999999999999999998776665553 56788999999999998874
No 44
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=90.07 E-value=2.3 Score=29.21 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=48.1
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhC-CCCCCChhHHHHHHHhhc
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYN-KKPTITSREIQTAVRLVL 124 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~n-kk~TltsREIQtAVRLlL 124 (128)
|.|+..++. +..+|.....+|..+-.-+.-.|.++|..+..-. ....|.++.|+.|+|.+.
T Consensus 22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 667777775 7788888888887777777778888888877654 456999999999999764
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=83.40 E-value=3 Score=33.66 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHhhhccC---CCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 55 SIETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 55 r~esys~YIyKVLKQVhP---d~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
++-.|...+..+.....+ |+.+.+.|+.-|.--.-+.+-.+=+.+.-.+.+.+|-||..+|||-|-||
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 466788888888777665 78899999877754333333333334556778899999999999999885
No 46
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=81.46 E-value=1.8 Score=28.58 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCCC
Q 033083 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPASS 128 (128)
Q Consensus 86 SfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE~ 128 (128)
-|..-=++.|+.||+-.+-......||..|+..|+.-+.|+.+
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~~ 86 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 86 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCC
Confidence 4444445668899998888887899999999999999999863
No 47
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=80.71 E-value=2.8 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 86 SfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
-|..-=++.|+.||+..+-......||..|+..|++-+.|+-
T Consensus 34 G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 34 KISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 344445567899999999888889999999999999998863
No 48
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=80.20 E-value=4.2 Score=37.77 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
.-|+|.||.++- -.|++.|.--|-..+-.+--.|-.-|++-++.+++..||.|+||-|++
T Consensus 108 ~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 108 EKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred HHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 358888866553 377777766444444444444444455556779999999999999986
No 49
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=78.68 E-value=2.6 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPAS 127 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE 127 (128)
|.--=+..|+.||+-.+-......||-.|+..|+.-+.||-
T Consensus 35 ~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 35 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 44334567888999888877888999999999999999984
No 50
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=78.57 E-value=11 Score=25.84 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHhhhcc--CCCCcchhhHHHHHh----HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 61 IYIFKVLKQVH--PDIGISSKAMGIMNS----FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 61 ~YIyKVLKQVh--Pd~gISskAM~IMnS----fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
.-|-|+|++-+ ..+.||..|+.++.- ||+.-+.|-+.+|- -....+|+..+++.-.-+
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~----~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ----AEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcccHHHHHHHHHH
Confidence 45888999776 568899999887655 44444445444443 356678999988864433
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=77.37 E-value=2.5 Score=26.70 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPASS 128 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE~ 128 (128)
|.--=++.|+.||+..+-......||..|+..|+.-++.+++
T Consensus 37 ~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~~ 78 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 78 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccC
Confidence 444445679999999998888999999999999998876653
No 52
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=77.19 E-value=8.8 Score=25.97 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHHHhhhccC--CCCcchhhHHHH----HhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 61 IYIFKVLKQVHP--DIGISSKAMGIM----NSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 61 ~YIyKVLKQVhP--d~gISskAM~IM----nSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
.-|.++|++.+. .+.|++.|+..+ +-||+.-+.|-+.+| .-.....|...+++.-.-
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHHHH
Confidence 348889998876 588999988765 455555556655554 345667888888876443
No 53
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.83 E-value=3.1 Score=36.12 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHH------------------HHHHHHHHhhHHhhCCCCCCChhHHHHH
Q 033083 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI------------------FEKLAQEASRLARYNKKPTITSREIQTA 119 (128)
Q Consensus 58 sys~YIyKVLKQVhPd~gISskAM~IMnSfVnDi------------------FErIA~EAs~La~~nkk~TltsREIQtA 119 (128)
....||..+-..++| .||..+...|..+..++ ++.|..-|.-+|....+.+++..|++.|
T Consensus 506 ~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 506 TLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp TTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 345555555455676 56677777766665432 5667777778889999999999999999
Q ss_pred HHhhc
Q 033083 120 VRLVL 124 (128)
Q Consensus 120 VRLlL 124 (128)
++|+.
T Consensus 584 i~l~~ 588 (595)
T 3f9v_A 584 INIMR 588 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 54
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=76.76 E-value=2.8 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
|..-=++.|+.||+..+-...+..||..|++.|+.-++.|
T Consensus 32 ~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~ 71 (82)
T 2dzn_B 32 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 71 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcC
Confidence 4444446688999998888888899999999999998765
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.47 E-value=9.9 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=41.7
Q ss_pred cCCCCcchhhHHHHHhHHHH-------HHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcC
Q 033083 71 HPDIGISSKAMGIMNSFIND-------IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (128)
Q Consensus 71 hPd~gISskAM~IMnSfVnD-------iFErIA~EAs~La~~nkk~TltsREIQtAVRLlLP 125 (128)
.++..||..++..+..+... -...+..-|..++....+.+|+..+|..|+.++|.
T Consensus 263 ~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 263 LPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALS 324 (350)
T ss_dssp GGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHh
Confidence 34568899888877766543 23456666667787888889999999999999875
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.29 E-value=15 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 92 FErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
++.+..+|..++...++.+||..++..|+..++-|
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 34677788888888888999999999999998876
No 57
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=57.74 E-value=24 Score=22.88 Aligned_cols=48 Identities=23% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHhhhccCCCCcchhhHHHHHhHHHHH---------HHHHHHHHhhHHhhCCCC
Q 033083 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDI---------FEKLAQEASRLARYNKKP 109 (128)
Q Consensus 61 ~YIyKVLKQVhPd~gISskAM~IMnSfVnDi---------FErIA~EAs~La~~nkk~ 109 (128)
.++|.+..|-.-+ .+|+.-+..|+.+++|. =..|..+|.+.|-.+++.
T Consensus 2 ~~~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~ 58 (83)
T 2i5u_A 2 NAIRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR 58 (83)
T ss_dssp HHHHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC
Confidence 4567777877335 78998899999998887 467888888888666544
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=55.77 E-value=57 Score=27.79 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=44.4
Q ss_pred hHHHHHHHhhhcc---CCCCcchhhHHHHHhHHH-------------HHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 59 YKIYIFKVLKQVH---PDIGISSKAMGIMNSFIN-------------DIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 59 ys~YIyKVLKQVh---Pd~gISskAM~IMnSfVn-------------DiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
...|+..+.++.. ....|+..|+..+-.+-. .-++.|..+|..+|+...+..|+..+|+.|++.
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 295 RRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4445544444433 446799998877665432 123456777888999999999999999999864
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.73 E-value=32 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 94 KLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 94 rIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
.+..-|.-+|.++.+..++..+|+.+++++|..
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 344555667888999999999999999998854
No 60
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=51.04 E-value=24 Score=26.05 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcC
Q 033083 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (128)
Q Consensus 91 iFErIA~EAs~La~~nkk~TltsREIQtAVRLlLP 125 (128)
-.+.+..+|...+....+.+||..+|+.|++-+++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 34558888888888888999999999999998764
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=48.11 E-value=85 Score=23.54 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=46.5
Q ss_pred hhhHHHHHHHhhhccCCCCcchhhHHHHHhHHH----HH--HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 57 esys~YIyKVLKQVhPd~gISskAM~IMnSfVn----Di--FErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
+....++...+.+...+..++..++..+-.+.. |+ ...+...|..++......+||..+|+.|+..+
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 204 PQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 344555666666555567788888877776665 32 23566677777777788899999999987654
No 62
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.55 E-value=28 Score=21.76 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=23.6
Q ss_pred HHHHHhhhccCCCCcc-hhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 62 YIFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 62 YIyKVLKQVhPd~gIS-skAM~IMnSfVnDiFErIA~EAs~ 101 (128)
-..+..++.|||..-+ ..+...+ ..|+.-|+-|.....+
T Consensus 27 ayr~l~~~~HPD~~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 27 AYYQLAKKYHPDTNKDDPKAKEKF-SQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHTCTTTCSSCTTHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 3466778999997653 3333332 3456667766665544
No 63
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=47.47 E-value=30 Score=23.16 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 86 SfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
-++|-|+-.+..||.+|..-. ..+..||..|+++-
T Consensus 18 fi~nRll~~~~~eA~~ll~eG---va~~~dID~a~~~g 52 (110)
T 3ctv_A 18 INPMDFTFVEINEAVKLVEMG---VATPQDIDTAIKLG 52 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHc
Confidence 467788888999999998754 34999999999864
No 64
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=45.57 E-value=28 Score=24.20 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=33.7
Q ss_pred HHHHhhhc--cCCCCcchhhHHHHH----hHHHHHHHHHHHHHhhHHh---hCCCCCCChhHHHHHHHhhc
Q 033083 63 IFKVLKQV--HPDIGISSKAMGIMN----SFINDIFEKLAQEASRLAR---YNKKPTITSREIQTAVRLVL 124 (128)
Q Consensus 63 IyKVLKQV--hPd~gISskAM~IMn----SfVnDiFErIA~EAs~La~---~nkk~TltsREIQtAVRLlL 124 (128)
|-|+|.+- .+++.||..|+..+. -||+.-+-|-..+.-.+.. ...-.+|+-.|+..=+-|||
T Consensus 7 laRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGlL~ 77 (88)
T 3v9r_B 7 LIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLL 77 (88)
T ss_dssp HHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHHHH
Confidence 55666654 566889999988654 4555544444444332221 11224677777776666665
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=44.28 E-value=1e+02 Score=23.39 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=44.8
Q ss_pred hhHHHHHHHhhhccCCCCcchhhHHHHHhHHH----HHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcC
Q 033083 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (128)
Q Consensus 58 sys~YIyKVLKQVhPd~gISskAM~IMnSfVn----DiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLP 125 (128)
....++.+.+.+. +..++..++..+-.+.. .-...+...|..++..++..+||..+|+.|+.+++.
T Consensus 263 e~~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 263 DTKQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp HHHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 3344555555543 45688887776655543 123356667777888889999999999999988654
No 66
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=40.30 E-value=43 Score=21.53 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=23.5
Q ss_pred HHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 62 YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~ 101 (128)
-..+..++.|||..-...+...+ ..|+.-|+-|..+..+
T Consensus 37 ayr~l~~~~HPDk~~~~~~~~~f-~~i~~Ay~~L~d~~~R 75 (88)
T 2cug_A 37 AYKKLAREWHPDKNKDPGAEDRF-IQISKAYEILSNEEKR 75 (88)
T ss_dssp HHHHHHHHSCTTTCCSTTHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCChhHHHHH-HHHHHHHHHHCCHHHH
Confidence 35667788999987654443332 2456666666655444
No 67
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=39.85 E-value=31 Score=26.49 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred hhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 57 esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
+....||.+.+++- +..|+..++..+-.+++.=+..+..|.-+|+.|....+||..+|+..+-.
T Consensus 145 ~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 145 AQLPRWVAARAKQL--NLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp THHHHHHHHHHHHT--TCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 45566777777764 46799999998888877667788889999998865668999999877653
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.99 E-value=28 Score=29.42 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCCCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPASS 128 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPGE~ 128 (128)
|..-=+..|+.||+.++-.+++..||..|+..|+.-+.|..+
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCC
Confidence 444445789999999988888899999999999999988653
No 69
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.71 E-value=39 Score=21.05 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHH
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEA 99 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EA 99 (128)
..+..++.|||..-...+...+ ..|+.-|+-|....
T Consensus 28 yr~l~~~~HPDk~~~~~~~~~f-~~i~~Ay~~L~d~~ 63 (78)
T 2ctp_A 28 YRRLALKFHPDKNHAPGATEAF-KAIGTAYAVLSNPE 63 (78)
T ss_dssp HHHHHTTSCTTTCSSHHHHHHH-HHHHHHHHHHTSHH
T ss_pred HHHHHHHHCcCCCCCccHHHHH-HHHHHHHHHHCCHH
Confidence 4567789999987654433322 23445555444443
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.08 E-value=1.2e+02 Score=22.54 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=44.8
Q ss_pred hHHHHHHHhhhccCCCCcchhhHHHHHhHHH----HH--HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 59 ys~YIyKVLKQVhPd~gISskAM~IMnSfVn----Di--FErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
...++...+.+...+..++..++..+-.+.. |+ ...+...|..++......+||..+|+.|+..+
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4445555555555567788887777666654 11 22467777788887888899999999887654
No 71
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.77 E-value=18 Score=30.63 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
|..-=++.|+.||+-++-..++..||..|++.|++-|+|+
T Consensus 353 ~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 353 CSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 4443457899999999988889999999999999988764
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.07 E-value=20 Score=30.84 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 86 SfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
-|..-=++.|+.||+.+|-..++..||..|+..|++-++|+
T Consensus 386 GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 386 DLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 35544457899999999988889999999999999988775
No 73
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=36.14 E-value=57 Score=24.54 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=38.3
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHH
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREI 116 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREI 116 (128)
+-|+++... ++.+...-..=|+.||+..|.-+..-|-.=|.||+|-+|-.+|+
T Consensus 8 ~e~lFR~aa-~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 8 FERLFRQAA-GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHHHHHHH-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 344444443 55566655566777888888888888888999999999988773
No 74
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.03 E-value=46 Score=28.45 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 92 FErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
++.+..+|..++....+..||..|++.|+.-+++|
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 45677788888887788899999999999999887
No 75
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.55 E-value=46 Score=21.38 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHH
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEA 99 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EA 99 (128)
..+..++.|||..-+..+...+. .|+.-|+.|....
T Consensus 28 yr~l~~~~HPDk~~~~~a~~~f~-~i~~Ay~~L~d~~ 63 (88)
T 2ctr_A 28 FHKLAMKYHPDKNKSPDAEAKFR-EIAEAYETLSDAN 63 (88)
T ss_dssp HHHHHHHTCTTTCCSHHHHHHHH-HHHHHHHHHHSSH
T ss_pred HHHHHHHHCcCCCCChHHHHHHH-HHHHHHHHHCCHH
Confidence 46677899999876554443332 3455555555443
No 76
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.53 E-value=1.1e+02 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred HhhHHhhCCCCCCChhHHHHHHHhhc
Q 033083 99 ASRLARYNKKPTITSREIQTAVRLVL 124 (128)
Q Consensus 99 As~La~~nkk~TltsREIQtAVRLlL 124 (128)
|--+|+...+..++..||+.|++|+.
T Consensus 459 A~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 459 AKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 33578889999999999999999973
No 77
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=33.21 E-value=29 Score=26.82 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHH---HHHHHHHHhhHH
Q 033083 53 KKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI---FEKLAQEASRLA 103 (128)
Q Consensus 53 kkr~esys~YIyKVLKQVhPd~gISskAM~IMnSfVnDi---FErIA~EAs~La 103 (128)
--|.-+|++-+|-..+|-|||.... .+|++||.-| ||+==.||..+.
T Consensus 94 A~RIVsfaT~FF~~yq~qhPd~~~e----e~L~~Fm~lIgGGiEqGF~EArdIL 143 (175)
T 3sjr_A 94 SQHLLLGMEILMELYRQQHPDWTAP----AIRQAFAPLARAGLERGYQEACQVL 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4467899999999999999998876 5788888766 666666776643
No 78
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.93 E-value=20 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 91 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 91 iFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
-...+..+|...+......+|+..++..|+.-++||
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 345677788888877888899999999999988765
No 79
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=32.52 E-value=86 Score=24.74 Aligned_cols=68 Identities=7% Similarity=0.250 Sum_probs=42.5
Q ss_pred cchhhHHHHHHHhhhccCCCCc--chhhHHHHHhHHHHHHHHHHHHHhhHHh------------------hCCCCCCChh
Q 033083 55 SIETYKIYIFKVLKQVHPDIGI--SSKAMGIMNSFINDIFEKLAQEASRLAR------------------YNKKPTITSR 114 (128)
Q Consensus 55 r~esys~YIyKVLKQVhPd~gI--SskAM~IMnSfVnDiFErIA~EAs~La~------------------~nkk~TltsR 114 (128)
....|..-+...+-.+--| .+ |++.-.++. ++|+|..||-....+|. +|+...||..
T Consensus 56 ~dp~fR~~F~~mc~siGVD-PLa~s~kg~~~lg--~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~d 132 (233)
T 1u5t_A 56 ASPEFRSKFMHMCSSIGID-PLSLFDRDKHLFT--VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLD 132 (233)
T ss_dssp TCHHHHHHHHHHHHHHTCC-HHHHTTSSGGGTT--HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHH
T ss_pred cCHHHHHHHHHHHHHcCCC-CCccCCccccccC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHH
Confidence 3566777777777766555 22 333222333 36666666666555543 3444689999
Q ss_pred HHHHHHHhhcC
Q 033083 115 EIQTAVRLVLP 125 (128)
Q Consensus 115 EIQtAVRLlLP 125 (128)
||..|+..+=|
T Consensus 133 Di~rAik~L~~ 143 (233)
T 1u5t_A 133 DLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhh
Confidence 99999998643
No 80
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.14 E-value=50 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhhc--------cCCC--CcchhhHHHHHhHHHHHHHHHH
Q 033083 58 TYKIYIFKVLKQV--------HPDI--GISSKAMGIMNSFINDIFEKLA 96 (128)
Q Consensus 58 sys~YIyKVLKQV--------hPd~--gISskAM~IMnSfVnDiFErIA 96 (128)
....-|.++|.|- +++- .||++.+..||.+-..|++.||
T Consensus 98 asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~~~ 146 (146)
T 3iz6_S 98 SSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA 146 (146)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHhhC
Confidence 3456677777763 6654 4999999999999988887653
No 81
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.54 E-value=41 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHhhhccCCCCcc-hhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 63 IFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 63 IyKVLKQVhPd~gIS-skAM~IMnSfVnDiFErIA~EAs~ 101 (128)
..+..++.|||..-. ..+...+ ..|+.-|+-|.....+
T Consensus 38 yr~l~~~~HPDk~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 38 YYRQCFLYHPDRNSGSAEAAERF-TRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHSCTTTCSSCSHHHHHH-HHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 467788999998753 3333322 3345555555555443
No 82
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.35 E-value=77 Score=20.33 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHhhhccCCCCcch--hhHHHHHhHHHHHHHHHHHHHhh
Q 033083 62 YIFKVLKQVHPDIGISS--KAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 62 YIyKVLKQVhPd~gISs--kAM~IMnSfVnDiFErIA~EAs~ 101 (128)
-..+..++.|||..-+. .+...+ ..|+.-|+.|.....+
T Consensus 29 ayr~l~~~~HPDk~~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 29 AYRKLALRWHPDKNPDNKEEAEKKF-KLVSEAYEVLSDSKKR 69 (92)
T ss_dssp HHHHHHHHTCTTTCSSCSHHHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCCccHHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 35667788999987543 232322 3456677766665544
No 83
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=30.79 E-value=47 Score=20.63 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHH
Q 033083 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE 98 (128)
Q Consensus 62 YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~E 98 (128)
-..+..++.|||..-+..+...+ ..|+.-|+-|...
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f-~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKF-KEIAEAYDVLSDP 58 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHH-HHHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCCCCCccHHHHH-HHHHHHHHHHCCH
Confidence 35667889999987654433322 2334444444433
No 84
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.53 E-value=27 Score=30.22 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
|.--=++.|+.||+.+|-..++..||..|+..|+.-|++|
T Consensus 414 fSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 414 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 4433356789999999888888999999999999888765
No 85
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=30.29 E-value=15 Score=25.82 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHHHHHhhhccC-CCCcchhhHHHHHhHHHHHHHHHHHH
Q 033083 60 KIYIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQE 98 (128)
Q Consensus 60 s~YIyKVLKQVhP-d~gISskAM~IMnSfVnDiFErIA~E 98 (128)
...|||+|+-..- +..||.++++|=....++|++-+.++
T Consensus 4 ~~iiYkIL~~L~~~~~~is~e~l~Ise~~~~~il~~L~d~ 43 (102)
T 2hgc_A 4 DKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKRE 43 (102)
T ss_dssp -CCHHHHHHHHHHHCSCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhCCCcCCHHhcCCCHHHHHHHHHHHHHC
Confidence 3457777765532 22499999999999999999888765
No 86
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.08 E-value=51 Score=27.87 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 87 FINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 87 fVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
|..-=+..|+.||+.++-...+..||..|+..|++-|.|.
T Consensus 386 ~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 386 FNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 4444456788999999988888999999999999988775
No 87
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.15 E-value=1.8e+02 Score=21.81 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=44.8
Q ss_pred hhHHHHHHHhhhccCCCCcchhhHHHHHhHH----------HHH--HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcC
Q 033083 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFI----------NDI--FEKLAQEASRLARYNKKPTITSREIQTAVRLVLP 125 (128)
Q Consensus 58 sys~YIyKVLKQVhPd~gISskAM~IMnSfV----------nDi--FErIA~EAs~La~~nkk~TltsREIQtAVRLlLP 125 (128)
....++...+.+...+..++..++..+-... .|+ ...+...|..++......+|+..+|..|...++.
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp HHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 3455566666654445578887776665555 232 2345566666777777889999999999887654
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=29.05 E-value=1.3e+02 Score=20.09 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=34.2
Q ss_pred hHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 59 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 59 ys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
...|+.+.+.+. +..++..++..+-.....-...+......++.+. .+||..+|+.++.
T Consensus 166 ~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 166 MKKRLLEICEKE--GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHH--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 345555555543 2347776665544443333334444444555554 6999999999886
No 89
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=28.86 E-value=1.4e+02 Score=20.24 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 97 QEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 97 ~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
.++..+...++.-+|+..|++.+++.+
T Consensus 42 ~~~F~~~D~d~~G~i~~~El~~~l~~~ 68 (180)
T 3mse_B 42 NELFYKLDTNHNGSLSHREIYTVLASV 68 (180)
T ss_dssp HHHHHHHCTTCSSSEEHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHHc
Confidence 445556667777888888888887743
No 90
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.95 E-value=83 Score=26.43 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 86 SFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 86 SfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
-|..-=+..|+.||+-+|-..++..|+..|+..|+.-+++.
T Consensus 377 G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 377 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 417 (428)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCc
Confidence 34444457889999999988889999999999999876654
No 91
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=27.59 E-value=13 Score=22.23 Aligned_cols=11 Identities=45% Similarity=0.413 Sum_probs=8.6
Q ss_pred HHHHhhhccCC
Q 033083 63 IFKVLKQVHPD 73 (128)
Q Consensus 63 IyKVLKQVhPd 73 (128)
--++||||||-
T Consensus 26 ~g~elkqitpp 36 (38)
T 3mn5_S 26 KGKELKQITPP 36 (38)
T ss_pred ccccccccCCC
Confidence 34789999984
No 92
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.16 E-value=90 Score=20.19 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=12.8
Q ss_pred HHHHhhhccCCCCcchhh
Q 033083 63 IFKVLKQVHPDIGISSKA 80 (128)
Q Consensus 63 IyKVLKQVhPd~gISskA 80 (128)
..+..++.|||..-...+
T Consensus 48 Yr~la~~~HPDk~~~~~~ 65 (90)
T 2ys8_A 48 YRKLAVLLHPDKCVAPGS 65 (90)
T ss_dssp HHHHHHHHCTTTCCCTTH
T ss_pred HHHHHHHHCcCCCCCccH
Confidence 466778999998755433
No 93
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=26.92 E-value=7.4 Score=28.95 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHHh
Q 033083 89 NDIFEKLAQEASRLARYNKKPTITSREIQTAVRL 122 (128)
Q Consensus 89 nDiFErIA~EAs~La~~nkk~TltsREIQtAVRL 122 (128)
+||||+|.-.+++|..|-. .-|+=--||.+.|+
T Consensus 102 ~~iFE~IGiDssKleKYYd-~FL~yyRiQe~~~~ 134 (136)
T 2rp5_A 102 NDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134 (136)
T ss_dssp SCHHHHHTCCGGGHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHhcccHHHHHHHHH-HHHHHHHHHHhccC
Confidence 6899999999999988742 23444567777774
No 94
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=26.85 E-value=73 Score=27.03 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhhcCC
Q 033083 92 FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 92 FErIA~EAs~La~~nkk~TltsREIQtAVRLlLPG 126 (128)
++.+..+|..++...++..|+..++..|+.-+++|
T Consensus 225 L~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 225 LENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 34567788888877778899999999999998876
No 95
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=26.66 E-value=83 Score=20.02 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 63 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 63 IyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~ 101 (128)
..+..++.|||.+-+...+. -||.-|+.|.....+
T Consensus 34 Yr~la~~~HPDk~~~~~~f~----~i~~AYe~L~~~~~r 68 (79)
T 1faf_A 34 YKQQSLLLHPDKGGSHALMQ----ELNSLWGTFKTEVYN 68 (79)
T ss_dssp HHHHHHHSSGGGSCCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCCHHHHH----HHHHHHHHHhhHHHH
Confidence 35677899999875543332 345566666554443
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=26.43 E-value=1.1e+02 Score=20.69 Aligned_cols=61 Identities=5% Similarity=0.131 Sum_probs=31.4
Q ss_pred hhHHHHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHHHHHHH
Q 033083 58 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 121 (128)
Q Consensus 58 sys~YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREIQtAVR 121 (128)
....|+...+.+- +..++..++..+-.........+-..+-+++.+.. .+||..+|..++.
T Consensus 189 e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 189 QIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHHT--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 3445555555542 34566665544433333222233333333344443 4899999988753
No 97
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=26.14 E-value=65 Score=20.04 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=11.9
Q ss_pred HHHHhhhccCCCCcch
Q 033083 63 IFKVLKQVHPDIGISS 78 (128)
Q Consensus 63 IyKVLKQVhPd~gISs 78 (128)
..+..++.|||.+=+.
T Consensus 36 yr~l~~~~HPDk~g~~ 51 (71)
T 2guz_A 36 HRKIMLANHPDKGGSP 51 (71)
T ss_dssp HHHHHHHHCGGGTCCH
T ss_pred HHHHHHHHCCCCCCCH
Confidence 4567789999987544
No 98
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.83 E-value=84 Score=21.11 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHhhhccCCCCcc-hhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 63 IFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 63 IyKVLKQVhPd~gIS-skAM~IMnSfVnDiFErIA~EAs~ 101 (128)
..+..++.|||..-. ..+...+ ..|+.-|+-|.....+
T Consensus 41 yr~l~~~~HPDk~~~~~~a~~~f-~~i~~Ay~vL~d~~~R 79 (112)
T 2ctq_A 41 FKVRALECHPDKHPENPKAVETF-QKLQKAKEILTNEESR 79 (112)
T ss_dssp HHHHHHTTCTTTCTTCSTHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHCcCCCCCcHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 467788999998763 3333333 3456666666655544
No 99
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.66 E-value=58 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 97 QEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 97 ~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
.++..+...++.-.|+..|++.+++.+
T Consensus 32 ~~~F~~~D~d~~G~I~~~El~~~l~~~ 58 (94)
T 2kz2_A 32 REAFRVEDKDGNGYISAAELRHVMTNL 58 (94)
T ss_dssp HHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCCHHHHHHHHHHh
Confidence 344455555666667777776666543
No 100
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=25.19 E-value=1.1e+02 Score=24.19 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=39.1
Q ss_pred chhhHHHHHHHhhhccCCCCcchhhH--HHHHhHHHHHHHHHHHHHhhHHhh------------------CC-----CCC
Q 033083 56 IETYKIYIFKVLKQVHPDIGISSKAM--GIMNSFINDIFEKLAQEASRLARY------------------NK-----KPT 110 (128)
Q Consensus 56 ~esys~YIyKVLKQVhPd~gISskAM--~IMnSfVnDiFErIA~EAs~La~~------------------nk-----k~T 110 (128)
...|..-+...+-.+--|---|++.. .++. ++|.+..||-+-..+|.. |+ ...
T Consensus 37 dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG--~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~ 114 (234)
T 3cuq_A 37 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLG--VGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQD 114 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSS
T ss_pred CHHHHHHHHHHHHHcCCCcccCCcchhhhhcC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCc
Confidence 45677777777777766622233310 1222 356666555554444322 21 168
Q ss_pred CChhHHHHHHHhhcC
Q 033083 111 ITSREIQTAVRLVLP 125 (128)
Q Consensus 111 ltsREIQtAVRLlLP 125 (128)
||..||..|+..+=+
T Consensus 115 IS~dDi~rAik~L~~ 129 (234)
T 3cuq_A 115 VSQDDLIRAIKKLKA 129 (234)
T ss_dssp CCHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999987643
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.80 E-value=2.4e+02 Score=21.28 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhhhccCCCCcchhhHHHHHhHHH----HH--HHHHHHHHhhHHhhCCCCCCChhHHHHHHHhh
Q 033083 57 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQEASRLARYNKKPTITSREIQTAVRLV 123 (128)
Q Consensus 57 esys~YIyKVLKQVhPd~gISskAM~IMnSfVn----Di--FErIA~EAs~La~~nkk~TltsREIQtAVRLl 123 (128)
+....++...+.+..++..++..++..+-.+.. |+ ...+...|..++. +..+||..+|..|+..+
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 334455555666556667788887776666554 11 1134444555554 55789999999887654
No 102
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.41 E-value=93 Score=20.84 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHhhhccCCCCcc-hhhHHHHHhHHHHHHHHHHHHHhh
Q 033083 62 YIFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 62 YIyKVLKQVhPd~gIS-skAM~IMnSfVnDiFErIA~EAs~ 101 (128)
-..+..++.|||..-. ..+...+ ..|+.-|+.|.....+
T Consensus 37 aYr~la~~~HPDk~~~~~~a~~~f-~~i~~Ay~vL~d~~~R 76 (109)
T 2ctw_A 37 SYRKLALKYHPDKNPDNPEAADKF-KEINNAHAILTDATKR 76 (109)
T ss_dssp HHHHHHHHSCTTTSTTCHHHHHHH-HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHH-HHHHHHHHHHcCHHHH
Confidence 3567788999998754 3333322 2445556655554443
No 103
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=22.69 E-value=53 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=18.9
Q ss_pred hhccCCCCcchhhHHHHHhHHH
Q 033083 68 KQVHPDIGISSKAMGIMNSFIN 89 (128)
Q Consensus 68 KQVhPd~gISskAM~IMnSfVn 89 (128)
=|-||+...+.....|+.+|++
T Consensus 166 vQfHPE~~~~~~g~~il~nf~~ 187 (192)
T 1i1q_B 166 FQFHPESILTTQGARLLEQTLA 187 (192)
T ss_dssp ESSBTTSTTCTTHHHHHHHHHH
T ss_pred EEccCcccCCcccHHHHHHHHH
Confidence 4779999888888999999985
No 104
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=22.59 E-value=87 Score=24.82 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHHHHHH----------HhhHH-------hhCCCCCCChhHHHHHHHhhcCC
Q 033083 82 GIMNSFINDIFEKLAQE----------ASRLA-------RYNKKPTITSREIQTAVRLVLPA 126 (128)
Q Consensus 82 ~IMnSfVnDiFErIA~E----------As~La-------~~nkk~TltsREIQtAVRLlLPG 126 (128)
.-|-..+.+||+.+..| +..++ ..++.-+|+-+|+..|+-+++-|
T Consensus 103 ~~l~~~L~~lY~~l~~~~p~~v~~~~~~~~~a~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG 164 (261)
T 1eg3_A 103 LQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKA 164 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhhCcCcCCchhhHHHHHHHHHHHccCCCCceEeHHHHHHHHHHHcCC
Confidence 44555666666666443 11122 24677799999999999887766
No 105
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=22.04 E-value=21 Score=22.26 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=11.5
Q ss_pred ChhHHHHHHHhhc
Q 033083 112 TSREIQTAVRLVL 124 (128)
Q Consensus 112 tsREIQtAVRLlL 124 (128)
.++|.|-|||++|
T Consensus 35 ~~kE~~~aVrIlL 47 (47)
T 1d6g_A 35 PSKEWQPAQVILL 47 (47)
T ss_dssp SCSSHHHHHHSCC
T ss_pred CchhhChhheeeC
Confidence 6799999999986
No 106
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=68 Score=20.02 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=12.3
Q ss_pred HHHHHhhhccCCCCcch
Q 033083 62 YIFKVLKQVHPDIGISS 78 (128)
Q Consensus 62 YIyKVLKQVhPd~gISs 78 (128)
-..+..++.|||..-+.
T Consensus 29 ayr~l~~~~HPDk~~~~ 45 (82)
T 2ej7_A 29 AYRKLALKWHPDKNPEN 45 (82)
T ss_dssp HHHHHHTTSCTTTCSTT
T ss_pred HHHHHHHHHCcCCCCCc
Confidence 34667789999987543
No 107
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=21.16 E-value=61 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=41.7
Q ss_pred HHHHHhhhccCCCCcchhhHHHHHhHHHHHHHHHHHHHhhHHhhCCCCCCChhHH
Q 033083 62 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREI 116 (128)
Q Consensus 62 YIyKVLKQVhPd~gISskAM~IMnSfVnDiFErIA~EAs~La~~nkk~TltsREI 116 (128)
++-|+++... ++.+...-..=|+.||++-|.-|..-|-.=|.||+|-+|-.+|+
T Consensus 31 kferlFR~aa-gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 31 KLDHYFRTEL-DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 3556666654 66677766677788888888888888888999999999988773
No 108
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=20.59 E-value=97 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhc--------cCCC--CcchhhHHHHHhHHHHHHHH
Q 033083 59 YKIYIFKVLKQV--------HPDI--GISSKAMGIMNSFINDIFEK 94 (128)
Q Consensus 59 ys~YIyKVLKQV--------hPd~--gISskAM~IMnSfVnDiFEr 94 (128)
...-|.++|.|- +++- .||++.++.||.+...|++.
T Consensus 97 sg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v~~~ 142 (144)
T 3u5c_T 97 SGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEE 142 (144)
T ss_dssp CHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHHHhc
Confidence 345566666654 5644 49999999999988888754
No 109
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=20.03 E-value=1.4e+02 Score=19.49 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHhhhccCCCCcchh--hHHHHHhHHHHHHHHHHHHHhh
Q 033083 62 YIFKVLKQVHPDIGISSK--AMGIMNSFINDIFEKLAQEASR 101 (128)
Q Consensus 62 YIyKVLKQVhPd~gISsk--AM~IMnSfVnDiFErIA~EAs~ 101 (128)
-..+..++.|||..-... +...+ ..|+.-|+.|....++
T Consensus 36 aYrkla~~~HPDk~~~~~~~a~~~F-~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 36 IIRRLYLKWHPDKNPENHDIANEVF-KHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHTCTTTSSSCHHHHHHHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCchHHHHHHH-HHHHHHHHHHHhhccc
Confidence 346678899999865532 33322 3456666666665544
Done!