BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033085
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
++++Q + F V+++G GT + + AAK G+ + D + E+L + +NKL
Sbjct: 35 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQS--EILYQAMDIIRLNKL 92
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
++++Q + F V+++G GT + + AAK G+ L D + E+L + +NKL
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS--EILYQAMDIIRLNKL 111
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 45 EEYGLF---VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
+E+ L+ VW + LA+ + Q +G V ELGAG L +VA G++ + D
Sbjct: 51 QEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDY 110
Query: 102 NRIEVLKNM 110
E+L ++
Sbjct: 111 PDPEILNSL 119
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS 93
V+Q ++ F G V+++G G+ + + +A+ G+
Sbjct: 55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA 86
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124
G V+++GAGT + + A+ G+ +++ I + R V N L RV+
Sbjct: 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAI--WQQAREVVRFNGLEDRVH 135
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120
+ Q + F V+++G GT + + AAK G+ +V D S+ IE+ K + E+N +
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKEL---VELNGFS 86
Query: 121 CRV 123
++
Sbjct: 87 DKI 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,725,845
Number of Sequences: 62578
Number of extensions: 137193
Number of successful extensions: 404
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)