Query 033085
Match_columns 128
No_of_seqs 141 out of 1735
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.8 4.8E-20 1E-24 133.2 8.4 90 34-126 3-102 (173)
2 PF06325 PrmA: Ribosomal prote 99.6 1.7E-14 3.7E-19 112.2 11.3 87 33-125 128-215 (295)
3 COG2264 PrmA Ribosomal protein 99.5 2.3E-13 5E-18 105.8 9.5 82 34-121 130-212 (300)
4 COG3897 Predicted methyltransf 99.4 1.1E-13 2.5E-18 101.5 2.3 77 45-123 54-131 (218)
5 PF05175 MTS: Methyltransferas 99.2 4.7E-11 1E-15 85.7 8.9 67 52-125 17-85 (170)
6 COG4123 Predicted O-methyltran 99.2 7.9E-11 1.7E-15 89.6 8.2 81 37-126 18-100 (248)
7 KOG1499 Protein arginine N-met 99.2 4.7E-11 1E-15 94.1 6.9 92 21-125 21-113 (346)
8 TIGR00406 prmA ribosomal prote 99.2 2.1E-10 4.5E-15 88.8 10.4 87 33-125 126-213 (288)
9 PRK00517 prmA ribosomal protei 99.2 2.3E-10 5.1E-15 86.8 10.2 86 33-124 86-172 (250)
10 PF12847 Methyltransf_18: Meth 99.2 2.3E-10 5.1E-15 75.6 7.9 55 70-126 1-57 (112)
11 COG2263 Predicted RNA methylas 99.1 1.2E-09 2.6E-14 80.0 8.7 53 65-119 40-93 (198)
12 COG2890 HemK Methylase of poly 99.0 1.6E-09 3.4E-14 83.9 7.9 66 54-123 95-162 (280)
13 KOG3201 Uncharacterized conser 99.0 2.5E-10 5.3E-15 82.0 3.0 71 48-120 7-80 (201)
14 TIGR00095 RNA methyltransferas 98.9 7.7E-09 1.7E-13 75.7 8.8 68 56-125 35-103 (189)
15 TIGR00537 hemK_rel_arch HemK-r 98.9 1.2E-08 2.6E-13 73.5 8.5 62 54-121 7-68 (179)
16 KOG1500 Protein arginine N-met 98.9 6.6E-09 1.4E-13 82.3 7.0 59 64-125 171-230 (517)
17 COG2813 RsmC 16S RNA G1207 met 98.9 1.1E-08 2.4E-13 79.6 7.9 62 54-121 146-209 (300)
18 TIGR00477 tehB tellurite resis 98.8 1.6E-08 3.5E-13 74.0 8.1 50 70-121 30-79 (195)
19 PRK14968 putative methyltransf 98.8 2.2E-08 4.8E-13 71.6 8.6 65 51-121 8-72 (188)
20 KOG2793 Putative N2,N2-dimethy 98.8 6.2E-09 1.3E-13 79.3 5.8 80 37-119 42-133 (248)
21 PRK00107 gidB 16S rRNA methylt 98.8 3.6E-08 7.7E-13 72.2 8.7 53 70-125 45-99 (187)
22 PRK15001 SAM-dependent 23S rib 98.8 2.8E-08 6.1E-13 79.9 8.2 64 51-120 213-278 (378)
23 PRK14967 putative methyltransf 98.8 3.5E-08 7.6E-13 73.5 7.9 66 53-121 20-86 (223)
24 PF13847 Methyltransf_31: Meth 98.8 4E-08 8.7E-13 68.8 7.7 53 70-125 3-58 (152)
25 PRK12335 tellurite resistance 98.8 8.3E-08 1.8E-12 74.2 10.1 50 70-121 120-169 (287)
26 PRK03522 rumB 23S rRNA methylu 98.8 4.2E-08 9.2E-13 76.8 8.5 53 70-125 173-225 (315)
27 TIGR00138 gidB 16S rRNA methyl 98.8 3.1E-08 6.6E-13 72.1 7.1 54 69-125 41-96 (181)
28 PRK11036 putative S-adenosyl-L 98.7 6.5E-08 1.4E-12 73.4 8.8 54 70-125 44-97 (255)
29 PRK11207 tellurite resistance 98.7 5E-08 1.1E-12 71.6 7.9 49 70-120 30-78 (197)
30 TIGR03533 L3_gln_methyl protei 98.7 6.7E-08 1.4E-12 74.8 8.8 55 70-126 121-177 (284)
31 PF13659 Methyltransf_26: Meth 98.7 3.9E-08 8.4E-13 65.4 6.4 54 71-126 1-55 (117)
32 PRK13168 rumA 23S rRNA m(5)U19 98.7 6.8E-08 1.5E-12 78.8 9.0 64 55-120 282-345 (443)
33 PRK08287 cobalt-precorrin-6Y C 98.7 1.1E-07 2.5E-12 68.8 9.1 50 69-120 30-81 (187)
34 TIGR00080 pimt protein-L-isoas 98.7 8E-08 1.7E-12 71.2 8.4 62 57-120 64-128 (215)
35 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.8E-08 6.1E-13 75.2 5.8 50 69-120 58-107 (243)
36 PRK13944 protein-L-isoaspartat 98.7 1.2E-07 2.6E-12 69.9 9.1 68 56-125 58-128 (205)
37 KOG2920 Predicted methyltransf 98.7 2.1E-08 4.5E-13 77.4 4.8 60 46-107 89-152 (282)
38 PRK11727 23S rRNA mA1618 methy 98.7 5.4E-08 1.2E-12 76.8 7.2 55 70-126 114-171 (321)
39 PRK00377 cbiT cobalt-precorrin 98.7 1.7E-07 3.8E-12 68.6 9.2 57 67-125 37-96 (198)
40 TIGR02021 BchM-ChlM magnesium 98.7 1.6E-07 3.5E-12 69.5 9.0 55 68-124 53-107 (219)
41 TIGR00536 hemK_fam HemK family 98.7 1.1E-07 2.4E-12 73.5 8.3 71 54-126 97-170 (284)
42 TIGR02469 CbiT precorrin-6Y C5 98.7 2.4E-07 5.2E-12 61.7 8.9 51 68-120 17-69 (124)
43 PRK01544 bifunctional N5-gluta 98.7 1E-07 2.2E-12 79.2 8.3 54 71-126 139-194 (506)
44 PRK10909 rsmD 16S rRNA m(2)G96 98.7 1.6E-07 3.5E-12 69.5 8.3 49 70-120 53-102 (199)
45 PLN02396 hexaprenyldihydroxybe 98.6 9.7E-08 2.1E-12 75.3 7.4 54 69-124 130-183 (322)
46 PRK09489 rsmC 16S ribosomal RN 98.6 1.3E-07 2.9E-12 75.0 8.3 66 54-125 184-251 (342)
47 PRK15128 23S rRNA m(5)C1962 me 98.6 1.7E-07 3.7E-12 75.8 8.9 54 70-125 220-275 (396)
48 PLN02244 tocopherol O-methyltr 98.6 2E-07 4.4E-12 73.8 9.2 55 69-125 117-172 (340)
49 PRK07402 precorrin-6B methylas 98.6 2.8E-07 6.1E-12 67.2 9.2 50 69-120 39-90 (196)
50 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.9E-07 6.2E-12 79.2 10.6 54 70-125 538-593 (702)
51 PRK04148 hypothetical protein; 98.6 1.4E-07 3.1E-12 65.8 7.2 55 57-113 3-58 (134)
52 COG2230 Cfa Cyclopropane fatty 98.6 2.1E-07 4.5E-12 72.2 8.7 70 54-125 56-126 (283)
53 PLN02672 methionine S-methyltr 98.6 1.3E-07 2.7E-12 84.3 8.4 66 53-120 100-168 (1082)
54 PF02353 CMAS: Mycolic acid cy 98.6 1.8E-07 4E-12 72.2 8.2 71 54-126 46-117 (273)
55 PRK11805 N5-glutamine S-adenos 98.6 2.1E-07 4.6E-12 72.9 8.6 53 72-126 135-189 (307)
56 TIGR02085 meth_trns_rumB 23S r 98.6 1.8E-07 4E-12 75.0 8.4 49 70-120 233-281 (374)
57 KOG1270 Methyltransferases [Co 98.6 4.4E-08 9.6E-13 75.0 4.0 50 70-121 89-138 (282)
58 PF03848 TehB: Tellurite resis 98.6 2.4E-07 5.2E-12 68.2 7.5 54 68-123 28-81 (192)
59 PRK14966 unknown domain/N5-glu 98.6 2.5E-07 5.3E-12 75.3 8.2 64 53-120 236-301 (423)
60 TIGR03704 PrmC_rel_meth putati 98.6 3.9E-07 8.5E-12 69.4 8.5 64 54-119 69-135 (251)
61 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.8E-07 6.1E-12 69.7 7.4 54 70-125 56-113 (247)
62 TIGR00479 rumA 23S rRNA (uraci 98.5 4.6E-07 9.9E-12 73.6 8.9 63 56-120 278-340 (431)
63 PRK07580 Mg-protoporphyrin IX 98.5 3.1E-07 6.8E-12 67.9 7.2 55 69-125 62-116 (230)
64 PRK00312 pcm protein-L-isoaspa 98.5 5.8E-07 1.3E-11 66.3 8.6 65 54-120 62-126 (212)
65 PRK00121 trmB tRNA (guanine-N( 98.5 3.7E-07 8.1E-12 67.2 7.2 53 70-125 40-94 (202)
66 KOG3420 Predicted RNA methylas 98.5 1.8E-07 4E-12 66.3 5.2 58 66-125 44-102 (185)
67 KOG2904 Predicted methyltransf 98.5 5.6E-07 1.2E-11 69.6 8.1 74 51-127 127-205 (328)
68 PRK13942 protein-L-isoaspartat 98.5 7E-07 1.5E-11 66.3 8.5 65 54-120 60-127 (212)
69 PLN02585 magnesium protoporphy 98.5 5.7E-07 1.2E-11 70.8 8.3 47 69-117 143-189 (315)
70 TIGR02143 trmA_only tRNA (urac 98.5 6.9E-07 1.5E-11 71.2 8.6 47 72-120 199-245 (353)
71 PLN02781 Probable caffeoyl-CoA 98.5 6.2E-07 1.3E-11 67.7 7.6 56 69-126 67-125 (234)
72 smart00650 rADc Ribosomal RNA 98.5 5.8E-07 1.3E-11 64.2 7.1 47 68-116 11-57 (169)
73 PRK09328 N5-glutamine S-adenos 98.5 7.2E-07 1.6E-11 67.8 8.0 71 52-125 90-162 (275)
74 PRK05031 tRNA (uracil-5-)-meth 98.5 9.2E-07 2E-11 70.7 8.6 63 55-120 192-254 (362)
75 TIGR00478 tly hemolysin TlyA f 98.5 5.8E-07 1.3E-11 67.8 6.8 62 50-113 55-118 (228)
76 PRK00274 ksgA 16S ribosomal RN 98.4 7.3E-07 1.6E-11 68.6 7.3 55 59-115 31-85 (272)
77 PRK05134 bifunctional 3-demeth 98.4 1.5E-06 3.2E-11 64.7 8.6 60 59-120 37-96 (233)
78 PTZ00338 dimethyladenosine tra 98.4 1.1E-06 2.4E-11 68.6 8.0 65 59-125 25-89 (294)
79 TIGR03534 RF_mod_PrmC protein- 98.4 1.4E-06 3.1E-11 65.1 8.3 67 51-120 69-137 (251)
80 TIGR01177 conserved hypothetic 98.4 1.3E-06 2.9E-11 68.7 8.1 63 57-121 169-231 (329)
81 PF05185 PRMT5: PRMT5 arginine 98.4 1.9E-06 4.1E-11 70.8 9.1 55 70-126 186-246 (448)
82 PRK14896 ksgA 16S ribosomal RN 98.4 1.4E-06 3E-11 66.4 7.7 57 58-116 17-73 (258)
83 KOG2187 tRNA uracil-5-methyltr 98.4 9.6E-07 2.1E-11 73.0 7.0 100 14-121 333-432 (534)
84 TIGR00740 methyltransferase, p 98.4 1.4E-06 3E-11 65.3 7.4 53 70-124 53-109 (239)
85 PF02475 Met_10: Met-10+ like- 98.4 1E-06 2.2E-11 65.3 6.5 55 70-126 101-157 (200)
86 TIGR02716 C20_methyl_CrtF C-20 98.4 1.7E-06 3.6E-11 67.2 7.7 54 70-126 149-204 (306)
87 TIGR00091 tRNA (guanine-N(7)-) 98.4 1.6E-06 3.5E-11 63.4 6.9 53 70-125 16-70 (194)
88 COG2242 CobL Precorrin-6B meth 98.3 3E-06 6.5E-11 62.1 8.1 52 67-120 31-84 (187)
89 PF01209 Ubie_methyltran: ubiE 98.3 2.4E-06 5.1E-11 64.6 7.8 63 50-120 33-98 (233)
90 PRK10258 biotin biosynthesis p 98.3 2E-06 4.4E-11 64.8 7.2 43 70-114 42-84 (251)
91 TIGR02752 MenG_heptapren 2-hep 98.3 3.3E-06 7.2E-11 62.7 8.2 49 70-120 45-96 (231)
92 PF13649 Methyltransf_25: Meth 98.3 1.9E-06 4.1E-11 56.3 6.0 48 74-123 1-53 (101)
93 PRK04266 fibrillarin; Provisio 98.3 3.7E-06 7.9E-11 63.3 8.2 66 47-116 45-118 (226)
94 PRK13943 protein-L-isoaspartat 98.3 3.7E-06 8E-11 66.4 8.4 62 56-120 67-131 (322)
95 PRK11705 cyclopropane fatty ac 98.3 3.5E-06 7.6E-11 67.9 8.1 52 62-115 159-211 (383)
96 TIGR01983 UbiG ubiquinone bios 98.3 5.6E-06 1.2E-10 61.0 8.4 50 68-119 43-92 (224)
97 PRK01683 trans-aconitate 2-met 98.3 3.6E-06 7.8E-11 63.6 7.5 44 69-114 30-75 (258)
98 PRK00216 ubiE ubiquinone/menaq 98.3 4.9E-06 1.1E-10 61.4 7.9 53 70-124 51-106 (239)
99 COG2226 UbiE Methylase involve 98.3 3.9E-06 8.5E-11 63.7 7.4 50 70-121 51-102 (238)
100 smart00828 PKS_MT Methyltransf 98.3 3.7E-06 7.9E-11 62.1 7.1 52 72-125 1-54 (224)
101 PF05971 Methyltransf_10: Prot 98.3 3.7E-06 8.1E-11 65.7 7.3 54 71-126 103-159 (299)
102 COG2265 TrmA SAM-dependent met 98.3 4.4E-06 9.6E-11 68.4 8.0 68 55-125 278-345 (432)
103 TIGR03587 Pse_Me-ase pseudamin 98.3 3.7E-06 8.1E-11 62.2 6.9 43 70-114 43-87 (204)
104 PRK15068 tRNA mo(5)U34 methylt 98.2 7.4E-06 1.6E-10 64.6 8.9 43 67-111 119-162 (322)
105 COG2518 Pcm Protein-L-isoaspar 98.2 6.8E-06 1.5E-10 61.2 8.2 72 48-121 50-121 (209)
106 TIGR00452 methyltransferase, p 98.2 9.5E-06 2.1E-10 63.9 9.2 43 67-111 118-161 (314)
107 PF05958 tRNA_U5-meth_tr: tRNA 98.2 3.5E-06 7.6E-11 67.1 6.8 65 54-121 181-245 (352)
108 PF08241 Methyltransf_11: Meth 98.2 1.5E-06 3.3E-11 54.8 3.7 43 75-119 1-44 (95)
109 KOG1271 Methyltransferases [Ge 98.2 4.3E-06 9.4E-11 61.4 6.4 71 53-125 46-122 (227)
110 TIGR00755 ksgA dimethyladenosi 98.2 6.4E-06 1.4E-10 62.5 7.6 54 60-115 19-72 (253)
111 PRK11873 arsM arsenite S-adeno 98.2 5.6E-06 1.2E-10 63.1 7.3 49 70-120 77-128 (272)
112 PF01596 Methyltransf_3: O-met 98.2 7.8E-06 1.7E-10 60.8 7.4 70 55-126 30-102 (205)
113 PLN02476 O-methyltransferase 98.2 1E-05 2.2E-10 62.7 8.1 55 70-126 118-175 (278)
114 PF03602 Cons_hypoth95: Conser 98.2 6.3E-06 1.4E-10 60.2 6.4 55 69-125 41-96 (183)
115 PRK10901 16S rRNA methyltransf 98.2 1E-05 2.2E-10 65.9 8.2 63 55-123 233-297 (427)
116 PLN02336 phosphoethanolamine N 98.2 1.1E-05 2.3E-10 66.2 8.3 44 70-115 266-310 (475)
117 PRK06202 hypothetical protein; 98.2 3.2E-06 7E-11 63.1 4.8 49 70-120 60-114 (232)
118 PRK05785 hypothetical protein; 98.1 4.5E-06 9.8E-11 62.6 5.3 41 71-113 52-93 (226)
119 PRK14902 16S rRNA methyltransf 98.1 1.2E-05 2.6E-10 65.7 8.2 65 54-125 238-305 (444)
120 PLN02233 ubiquinone biosynthes 98.1 1.8E-05 3.8E-10 60.5 8.6 44 70-115 73-119 (261)
121 PRK14103 trans-aconitate 2-met 98.1 7.6E-06 1.6E-10 62.0 6.5 42 69-112 28-71 (255)
122 PRK04338 N(2),N(2)-dimethylgua 98.1 6.1E-06 1.3E-10 66.5 6.3 49 71-121 58-108 (382)
123 KOG1501 Arginine N-methyltrans 98.1 5.3E-06 1.2E-10 67.9 5.7 53 73-127 69-122 (636)
124 TIGR01444 fkbM_fam methyltrans 98.1 1E-05 2.2E-10 55.6 6.3 50 73-125 1-52 (143)
125 PF13489 Methyltransf_23: Meth 98.1 1.1E-05 2.3E-10 55.9 6.4 40 68-109 20-59 (161)
126 PTZ00098 phosphoethanolamine N 98.1 1.3E-05 2.7E-10 61.4 7.3 56 59-116 41-97 (263)
127 PRK08317 hypothetical protein; 98.1 2.2E-05 4.7E-10 57.6 8.3 54 58-113 7-63 (241)
128 TIGR03438 probable methyltrans 98.1 1.2E-05 2.5E-10 62.7 7.1 47 70-118 63-112 (301)
129 PRK14121 tRNA (guanine-N(7)-)- 98.0 2.4E-05 5.1E-10 63.3 8.0 53 70-125 122-176 (390)
130 PF08704 GCD14: tRNA methyltra 98.0 2.7E-05 5.8E-10 59.5 7.7 63 62-126 32-97 (247)
131 TIGR00308 TRM1 tRNA(guanine-26 98.0 3.7E-05 8.1E-10 61.9 8.7 48 71-120 45-95 (374)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.0 3.2E-05 7E-10 59.2 8.0 65 51-121 56-123 (264)
133 PRK04457 spermidine synthase; 98.0 5.3E-05 1.2E-09 58.1 9.2 54 70-125 66-121 (262)
134 KOG3191 Predicted N6-DNA-methy 98.0 2.1E-05 4.6E-10 57.7 6.5 65 54-120 24-94 (209)
135 PRK14904 16S rRNA methyltransf 98.0 4.9E-05 1.1E-09 62.2 9.5 67 49-120 232-301 (445)
136 TIGR00563 rsmB ribosomal RNA s 98.0 3.4E-05 7.3E-10 62.8 8.3 65 53-123 225-291 (426)
137 TIGR03840 TMPT_Se_Te thiopurin 98.0 2E-05 4.3E-10 58.8 6.4 54 54-110 19-72 (213)
138 PRK06922 hypothetical protein; 98.0 2.6E-05 5.7E-10 66.6 7.8 49 69-119 417-467 (677)
139 COG2519 GCD14 tRNA(1-methylade 98.0 3.6E-05 7.9E-10 58.8 7.8 58 66-125 90-150 (256)
140 PF01135 PCMT: Protein-L-isoas 98.0 3.3E-05 7.2E-10 57.5 7.4 65 54-120 56-123 (209)
141 PRK14901 16S rRNA methyltransf 98.0 3.4E-05 7.5E-10 62.9 8.1 62 54-121 240-304 (434)
142 PHA03412 putative methyltransf 97.9 1.7E-05 3.6E-10 60.4 5.2 63 47-115 30-97 (241)
143 PRK13255 thiopurine S-methyltr 97.9 3.1E-05 6.6E-10 58.0 5.7 54 55-111 23-76 (218)
144 TIGR02072 BioC biotin biosynth 97.9 5.2E-05 1.1E-09 55.7 6.8 45 69-115 33-79 (240)
145 PHA03411 putative methyltransf 97.9 2.7E-05 5.9E-10 60.4 5.4 62 47-114 45-108 (279)
146 PLN02336 phosphoethanolamine N 97.9 6.3E-05 1.4E-09 61.7 7.8 40 70-111 37-76 (475)
147 PRK14903 16S rRNA methyltransf 97.9 8.3E-05 1.8E-09 60.8 8.2 50 70-121 237-289 (431)
148 COG4976 Predicted methyltransf 97.8 1.5E-05 3.2E-10 60.5 2.6 41 71-113 126-166 (287)
149 COG2520 Predicted methyltransf 97.8 6.1E-05 1.3E-09 60.0 6.1 55 70-126 188-243 (341)
150 PLN02490 MPBQ/MSBQ methyltrans 97.8 5.3E-05 1.1E-09 60.3 5.7 47 70-118 113-161 (340)
151 PF10672 Methyltrans_SAM: S-ad 97.8 0.00036 7.8E-09 54.4 10.1 85 34-125 92-178 (286)
152 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 0.0002 4.4E-09 52.2 8.0 44 70-115 39-85 (223)
153 PF08242 Methyltransf_12: Meth 97.7 3.2E-06 6.9E-11 54.8 -1.6 44 75-120 1-46 (99)
154 PLN02589 caffeoyl-CoA O-methyl 97.7 0.00017 3.7E-09 55.0 7.3 55 70-126 79-136 (247)
155 PF09445 Methyltransf_15: RNA 97.7 0.00014 3E-09 52.3 6.2 53 72-126 1-53 (163)
156 PF13679 Methyltransf_32: Meth 97.7 0.00025 5.4E-09 49.3 7.2 48 69-118 24-77 (141)
157 COG0742 N6-adenine-specific me 97.7 0.00025 5.4E-09 52.1 7.4 55 68-124 41-96 (187)
158 COG4122 Predicted O-methyltran 97.7 0.00027 5.8E-09 53.1 7.7 54 70-125 59-115 (219)
159 KOG1541 Predicted protein carb 97.7 0.00015 3.3E-09 54.8 6.2 41 70-112 50-90 (270)
160 COG1092 Predicted SAM-dependen 97.6 0.00056 1.2E-08 55.5 9.7 54 69-124 216-271 (393)
161 COG4076 Predicted RNA methylas 97.6 5.6E-05 1.2E-09 56.0 3.5 47 72-120 34-80 (252)
162 TIGR00438 rrmJ cell division p 97.6 0.00017 3.7E-09 52.2 5.9 45 58-102 20-67 (188)
163 PLN03075 nicotianamine synthas 97.6 0.00032 7E-09 54.9 7.6 55 70-126 123-182 (296)
164 PF08003 Methyltransf_9: Prote 97.6 0.00045 9.7E-09 54.3 8.1 40 64-103 109-149 (315)
165 PRK11088 rrmA 23S rRNA methylt 97.6 0.00033 7E-09 53.7 7.1 42 70-113 85-131 (272)
166 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00027 6E-09 52.4 6.1 34 69-102 50-86 (209)
167 KOG1540 Ubiquinone biosynthesi 97.5 0.00038 8.3E-09 53.6 6.7 69 46-122 82-158 (296)
168 TIGR02081 metW methionine bios 97.5 0.00021 4.5E-09 52.0 5.1 41 70-112 13-54 (194)
169 COG0030 KsgA Dimethyladenosine 97.5 0.00063 1.4E-08 52.3 7.7 55 59-115 19-73 (259)
170 PTZ00146 fibrillarin; Provisio 97.5 0.00056 1.2E-08 53.5 7.5 64 48-113 106-176 (293)
171 PHA01634 hypothetical protein 97.5 0.00035 7.6E-09 48.7 5.5 54 68-123 26-80 (156)
172 KOG3010 Methyltransferase [Gen 97.5 0.00013 2.8E-09 55.6 3.7 38 73-112 36-73 (261)
173 smart00138 MeTrc Methyltransfe 97.5 0.00028 6E-09 54.1 5.5 43 70-114 99-152 (264)
174 cd02440 AdoMet_MTases S-adenos 97.4 0.00044 9.6E-09 43.0 5.3 43 73-117 1-44 (107)
175 PF04816 DUF633: Family of unk 97.4 0.00086 1.9E-08 49.9 7.2 51 74-126 1-53 (205)
176 PRK13256 thiopurine S-methyltr 97.3 0.00075 1.6E-08 51.0 6.6 64 46-112 20-83 (226)
177 COG4106 Tam Trans-aconitate me 97.3 0.00062 1.3E-08 51.4 5.5 42 70-113 30-73 (257)
178 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00095 2.1E-08 51.0 6.6 59 55-115 15-73 (262)
179 PF07021 MetW: Methionine bios 97.3 0.00081 1.7E-08 49.6 5.8 34 70-103 13-47 (193)
180 PRK00811 spermidine synthase; 97.2 0.0013 2.8E-08 50.9 7.1 45 70-116 76-122 (283)
181 PF05401 NodS: Nodulation prot 97.2 0.00036 7.7E-09 51.7 3.7 42 72-115 45-86 (201)
182 KOG0820 Ribosomal RNA adenine 97.2 0.0024 5.3E-08 49.6 7.9 70 46-118 35-104 (315)
183 PF05724 TPMT: Thiopurine S-me 97.1 0.001 2.2E-08 49.8 5.3 61 47-110 15-75 (218)
184 COG3963 Phospholipid N-methylt 97.1 0.0021 4.5E-08 46.8 6.6 62 50-113 28-92 (194)
185 KOG2899 Predicted methyltransf 97.1 0.00074 1.6E-08 51.7 4.4 48 66-115 54-103 (288)
186 PRK03612 spermidine synthase; 97.1 0.0011 2.4E-08 55.5 5.5 43 70-114 297-341 (521)
187 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.0039 8.5E-08 54.0 8.0 69 55-125 174-287 (702)
188 KOG2497 Predicted methyltransf 96.9 0.0012 2.5E-08 51.0 3.6 57 46-102 66-122 (262)
189 KOG2078 tRNA modification enzy 96.9 0.0017 3.6E-08 53.2 4.6 92 32-126 209-304 (495)
190 PF01170 UPF0020: Putative RNA 96.8 0.0028 6.1E-08 45.9 5.1 67 58-126 16-93 (179)
191 TIGR00417 speE spermidine synt 96.8 0.004 8.6E-08 47.8 6.1 45 70-116 72-118 (270)
192 PF02527 GidB: rRNA small subu 96.8 0.012 2.6E-07 43.0 8.3 46 73-120 51-98 (184)
193 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0047 1E-07 49.9 6.6 53 71-125 50-106 (377)
194 PF02390 Methyltransf_4: Putat 96.7 0.0055 1.2E-07 45.1 6.1 48 72-121 19-68 (195)
195 PF00891 Methyltransf_2: O-met 96.7 0.0085 1.8E-07 44.8 7.2 40 70-112 100-141 (241)
196 PRK00050 16S rRNA m(4)C1402 me 96.7 0.0074 1.6E-07 47.3 6.9 45 70-116 19-66 (296)
197 PF02384 N6_Mtase: N-6 DNA Met 96.6 0.0059 1.3E-07 47.3 6.1 73 46-122 24-105 (311)
198 COG1189 Predicted rRNA methyla 96.6 0.0073 1.6E-07 46.0 6.3 55 49-103 58-113 (245)
199 PF03291 Pox_MCEL: mRNA cappin 96.5 0.0065 1.4E-07 48.3 5.8 62 51-114 43-105 (331)
200 KOG0024 Sorbitol dehydrogenase 96.5 0.015 3.3E-07 46.3 7.5 75 34-112 135-212 (354)
201 PRK01581 speE spermidine synth 96.4 0.0062 1.3E-07 49.1 5.0 41 70-112 150-192 (374)
202 PRK11760 putative 23S rRNA C24 96.4 0.0088 1.9E-07 47.9 5.6 35 68-102 209-243 (357)
203 COG0357 GidB Predicted S-adeno 96.3 0.012 2.5E-07 44.3 5.7 48 71-120 68-117 (215)
204 PRK10742 putative methyltransf 96.3 0.018 3.9E-07 44.1 6.6 42 73-116 91-132 (250)
205 PLN02366 spermidine synthase 96.2 0.012 2.7E-07 46.2 5.8 44 70-115 91-136 (308)
206 COG0220 Predicted S-adenosylme 96.2 0.018 3.9E-07 43.5 6.3 47 72-120 50-98 (227)
207 PF05219 DREV: DREV methyltran 96.1 0.021 4.6E-07 44.0 6.3 41 70-112 94-134 (265)
208 COG2384 Predicted SAM-dependen 96.0 0.041 9E-07 41.5 7.5 56 70-127 16-73 (226)
209 TIGR02987 met_A_Alw26 type II 96.0 0.016 3.4E-07 48.4 5.8 47 70-118 31-87 (524)
210 KOG1661 Protein-L-isoaspartate 96.0 0.014 3.1E-07 43.9 4.6 69 47-117 57-131 (237)
211 KOG2915 tRNA(1-methyladenosine 95.9 0.049 1.1E-06 42.6 7.6 57 68-126 103-162 (314)
212 KOG1227 Putative methyltransfe 95.7 0.0085 1.8E-07 47.3 2.8 75 47-123 164-247 (351)
213 KOG4300 Predicted methyltransf 95.6 0.012 2.6E-07 44.3 2.9 44 73-118 79-123 (252)
214 KOG2361 Predicted methyltransf 95.5 0.0089 1.9E-07 45.7 2.1 44 73-118 74-121 (264)
215 PF01728 FtsJ: FtsJ-like methy 95.5 0.053 1.2E-06 38.7 6.0 49 54-102 5-58 (181)
216 PLN02823 spermine synthase 95.4 0.049 1.1E-06 43.4 6.2 46 70-117 103-150 (336)
217 PF09243 Rsm22: Mitochondrial 95.3 0.073 1.6E-06 41.1 6.7 47 67-115 30-79 (274)
218 COG0116 Predicted N6-adenine-s 95.3 0.11 2.4E-06 42.2 7.7 70 55-126 176-286 (381)
219 PRK11933 yebU rRNA (cytosine-C 95.1 0.17 3.7E-06 42.1 8.6 66 52-121 97-165 (470)
220 PF08123 DOT1: Histone methyla 94.7 0.16 3.4E-06 37.8 6.8 44 68-113 40-85 (205)
221 KOG1663 O-methyltransferase [S 94.7 0.17 3.6E-06 38.5 6.9 57 68-126 71-130 (237)
222 KOG2730 Methylase [General fun 94.7 0.052 1.1E-06 41.3 4.1 72 52-125 75-147 (263)
223 KOG4058 Uncharacterized conser 94.5 0.089 1.9E-06 37.8 4.8 48 73-122 75-123 (199)
224 COG1041 Predicted DNA modifica 94.4 0.096 2.1E-06 42.0 5.3 64 56-121 183-246 (347)
225 COG2521 Predicted archaeal met 94.4 0.023 5E-07 43.5 1.7 43 70-114 134-177 (287)
226 PF07757 AdoMet_MTase: Predict 94.3 0.089 1.9E-06 35.5 4.2 30 72-101 60-89 (112)
227 PF06080 DUF938: Protein of un 94.3 0.14 3.1E-06 38.1 5.7 47 73-121 28-76 (204)
228 KOG1975 mRNA cap methyltransfe 94.3 0.073 1.6E-06 42.6 4.3 43 70-114 117-160 (389)
229 PRK01544 bifunctional N5-gluta 94.0 0.2 4.3E-06 42.0 6.6 49 70-120 347-397 (506)
230 COG1867 TRM1 N2,N2-dimethylgua 93.9 0.17 3.7E-06 40.9 5.7 48 71-120 53-102 (380)
231 COG3129 Predicted SAM-dependen 93.3 0.17 3.7E-06 38.9 4.6 54 70-125 78-134 (292)
232 PF12147 Methyltransf_20: Puta 92.7 1 2.2E-05 35.6 8.2 56 70-127 135-194 (311)
233 PF03686 UPF0146: Uncharacteri 92.7 0.39 8.4E-06 33.2 5.3 43 57-102 3-46 (127)
234 PF07091 FmrO: Ribosomal RNA m 92.2 0.52 1.1E-05 36.2 5.9 55 71-127 106-162 (251)
235 cd00315 Cyt_C5_DNA_methylase C 91.6 0.46 9.9E-06 36.6 5.2 40 73-114 2-42 (275)
236 PF01861 DUF43: Protein of unk 91.4 1.4 3E-05 33.8 7.5 76 46-127 21-98 (243)
237 PF01739 CheR: CheR methyltran 91.4 0.45 9.8E-06 35.1 4.8 41 70-112 31-82 (196)
238 COG0293 FtsJ 23S rRNA methylas 91.4 0.62 1.3E-05 34.8 5.5 49 54-102 29-80 (205)
239 COG0500 SmtA SAM-dependent met 91.3 0.56 1.2E-05 29.7 4.7 37 74-113 52-91 (257)
240 TIGR03439 methyl_EasF probable 90.9 0.6 1.3E-05 37.0 5.3 45 70-116 76-126 (319)
241 KOG2912 Predicted DNA methylas 90.8 0.18 3.8E-06 40.4 2.2 51 74-126 106-158 (419)
242 PF03141 Methyltransf_29: Puta 90.2 0.75 1.6E-05 38.6 5.5 52 44-95 87-142 (506)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.0 0.25 5.5E-06 38.0 2.5 45 67-113 53-98 (256)
244 PF01555 N6_N4_Mtase: DNA meth 90.0 1.6 3.4E-05 31.4 6.5 56 54-112 176-231 (231)
245 COG0144 Sun tRNA and rRNA cyto 89.8 2 4.4E-05 34.4 7.6 62 54-121 144-209 (355)
246 PF07942 N2227: N2227-like pro 89.7 1.8 3.9E-05 33.6 6.9 46 70-119 56-101 (270)
247 KOG3987 Uncharacterized conser 89.7 0.11 2.3E-06 39.5 0.1 40 71-112 113-152 (288)
248 COG1352 CheR Methylase of chem 89.3 0.71 1.5E-05 35.8 4.5 40 71-112 97-147 (268)
249 PF05206 TRM13: Methyltransfer 89.2 1 2.2E-05 34.7 5.2 43 60-102 8-57 (259)
250 KOG1253 tRNA methyltransferase 89.0 0.16 3.5E-06 42.5 0.7 54 70-125 109-165 (525)
251 PRK09424 pntA NAD(P) transhydr 89.0 0.8 1.7E-05 38.6 4.8 42 69-112 163-206 (509)
252 KOG2940 Predicted methyltransf 88.8 0.86 1.9E-05 35.2 4.5 39 72-112 74-113 (325)
253 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.5 5.1 0.00011 31.0 8.8 73 46-123 64-139 (283)
254 COG1063 Tdh Threonine dehydrog 88.3 1.4 2.9E-05 35.1 5.5 41 70-112 168-211 (350)
255 PF02636 Methyltransf_28: Puta 88.0 1.8 3.9E-05 32.7 5.9 40 72-114 20-69 (252)
256 PF01564 Spermine_synth: Sperm 87.6 1.4 3.1E-05 33.4 5.1 45 70-116 76-122 (246)
257 COG3392 Adenine-specific DNA m 87.4 1.2 2.7E-05 34.8 4.6 49 54-102 6-59 (330)
258 PRK10611 chemotaxis methyltran 87.3 1.3 2.8E-05 34.6 4.8 40 72-113 117-166 (287)
259 cd00401 AdoHcyase S-adenosyl-L 86.6 1.7 3.6E-05 35.8 5.3 36 67-102 198-235 (413)
260 COG1064 AdhP Zn-dependent alco 86.4 1.6 3.5E-05 35.0 5.0 44 68-113 164-209 (339)
261 PRK13699 putative methylase; P 86.3 5 0.00011 30.1 7.4 45 70-116 163-207 (227)
262 KOG2651 rRNA adenine N-6-methy 85.8 3.9 8.6E-05 33.7 6.9 38 72-111 155-193 (476)
263 PF11599 AviRa: RRNA methyltra 85.6 1.8 3.8E-05 32.9 4.5 43 72-116 53-99 (246)
264 COG0421 SpeE Spermidine syntha 84.9 3.5 7.5E-05 32.2 6.1 41 72-114 78-120 (282)
265 PF13578 Methyltransf_24: Meth 84.2 0.64 1.4E-05 30.0 1.5 48 75-125 1-53 (106)
266 PRK11524 putative methyltransf 83.9 6.4 0.00014 30.3 7.2 45 69-115 207-251 (284)
267 PF05891 Methyltransf_PK: AdoM 83.7 1.3 2.9E-05 33.3 3.2 45 70-116 55-100 (218)
268 cd01080 NAD_bind_m-THF_DH_Cycl 83.5 7.5 0.00016 27.9 6.9 42 61-102 34-78 (168)
269 PF05148 Methyltransf_8: Hypot 82.6 2.7 5.9E-05 31.7 4.5 36 51-89 54-91 (219)
270 PRK00536 speE spermidine synth 82.5 3.5 7.5E-05 31.9 5.2 41 70-112 72-112 (262)
271 KOG1201 Hydroxysteroid 17-beta 82.5 7.6 0.00017 30.7 7.0 50 67-118 34-86 (300)
272 PRK01438 murD UDP-N-acetylmura 82.5 5.3 0.00011 32.8 6.6 51 68-119 13-65 (480)
273 PF05050 Methyltransf_21: Meth 82.2 3.8 8.3E-05 27.9 4.9 44 76-121 1-52 (167)
274 COG1565 Uncharacterized conser 82.1 6.5 0.00014 31.9 6.6 57 55-114 59-128 (370)
275 PF02086 MethyltransfD12: D12 81.3 3.2 7E-05 30.9 4.5 45 58-102 8-52 (260)
276 PF03059 NAS: Nicotianamine sy 81.1 4 8.7E-05 31.8 5.1 52 72-125 122-178 (276)
277 PF04445 SAM_MT: Putative SAM- 81.0 3.7 7.9E-05 31.3 4.7 30 73-102 78-107 (234)
278 COG4262 Predicted spermidine s 80.7 6.2 0.00013 32.5 6.1 41 72-114 291-333 (508)
279 COG1255 Uncharacterized protei 80.7 3.8 8.3E-05 28.1 4.2 42 58-102 4-46 (129)
280 TIGR00006 S-adenosyl-methyltra 80.6 12 0.00025 29.7 7.5 45 70-116 20-66 (305)
281 PF00145 DNA_methylase: C-5 cy 80.2 4.5 9.7E-05 30.8 5.1 41 73-115 2-43 (335)
282 PLN02668 indole-3-acetate carb 79.7 1.3 2.9E-05 36.1 2.1 33 71-103 64-113 (386)
283 PF11899 DUF3419: Protein of u 79.3 7.5 0.00016 31.6 6.3 57 50-113 19-76 (380)
284 PRK09880 L-idonate 5-dehydroge 78.2 10 0.00023 29.4 6.7 41 69-111 168-211 (343)
285 cd08237 ribitol-5-phosphate_DH 76.9 4.7 0.0001 31.5 4.4 41 69-111 162-206 (341)
286 PRK08862 short chain dehydroge 75.9 16 0.00036 26.8 6.9 47 69-117 3-52 (227)
287 TIGR03201 dearomat_had 6-hydro 74.4 14 0.0003 28.8 6.5 35 68-102 164-200 (349)
288 TIGR03366 HpnZ_proposed putati 74.3 14 0.00031 27.8 6.4 34 69-102 119-155 (280)
289 PRK03369 murD UDP-N-acetylmura 74.1 7 0.00015 32.5 4.9 34 69-102 10-45 (488)
290 PF01269 Fibrillarin: Fibrilla 73.4 26 0.00056 26.7 7.3 65 46-112 45-116 (229)
291 PF02737 3HCDH_N: 3-hydroxyacy 73.4 9.4 0.0002 27.4 4.9 39 74-116 2-44 (180)
292 cd08281 liver_ADH_like1 Zinc-d 72.9 15 0.00032 28.9 6.4 35 68-102 189-226 (371)
293 cd08283 FDH_like_1 Glutathione 72.7 12 0.00026 29.7 5.9 43 68-112 182-227 (386)
294 TIGR02818 adh_III_F_hyde S-(hy 72.2 12 0.00026 29.5 5.7 35 68-102 183-220 (368)
295 KOG1709 Guanidinoacetate methy 71.3 15 0.00033 28.2 5.6 44 69-114 100-144 (271)
296 TIGR00675 dcm DNA-methyltransf 71.2 8.8 0.00019 30.1 4.6 39 74-114 1-40 (315)
297 PRK05867 short chain dehydroge 71.1 25 0.00054 25.8 6.9 46 69-116 7-55 (253)
298 KOG3115 Methyltransferase-like 71.0 7.7 0.00017 29.4 4.0 44 71-116 61-106 (249)
299 PF03721 UDPG_MGDP_dh_N: UDP-g 70.8 7.4 0.00016 28.2 3.9 35 74-110 3-39 (185)
300 TIGR02822 adh_fam_2 zinc-bindi 69.5 19 0.0004 28.0 6.1 43 68-112 163-207 (329)
301 TIGR00936 ahcY adenosylhomocys 69.3 7.5 0.00016 31.9 4.0 35 68-102 192-228 (406)
302 PRK00421 murC UDP-N-acetylmura 69.2 8.5 0.00018 31.5 4.3 36 68-103 4-42 (461)
303 COG1062 AdhC Zn-dependent alco 68.9 13 0.00027 30.2 5.1 42 68-111 183-227 (366)
304 PRK06124 gluconate 5-dehydroge 68.3 38 0.00083 24.7 7.4 47 68-116 8-57 (256)
305 PLN02740 Alcohol dehydrogenase 68.2 11 0.00023 29.9 4.7 41 68-110 196-239 (381)
306 PF00107 ADH_zinc_N: Zinc-bind 68.1 6.1 0.00013 25.9 2.8 30 80-111 1-31 (130)
307 TIGR00561 pntA NAD(P) transhyd 67.7 12 0.00027 31.6 5.0 40 70-111 163-204 (511)
308 cd08239 THR_DH_like L-threonin 67.0 22 0.00048 27.3 6.1 35 68-102 161-198 (339)
309 PRK05876 short chain dehydroge 66.9 34 0.00075 25.7 7.0 34 69-102 4-40 (275)
310 COG5459 Predicted rRNA methyla 66.7 5.4 0.00012 32.7 2.6 51 67-120 110-163 (484)
311 KOG0725 Reductases with broad 66.6 39 0.00085 25.9 7.3 51 67-119 4-57 (270)
312 PRK09242 tropinone reductase; 66.0 49 0.0011 24.2 7.6 47 68-116 6-55 (257)
313 COG5379 BtaA S-adenosylmethion 66.0 18 0.0004 29.0 5.4 50 50-103 47-96 (414)
314 PRK06172 short chain dehydroge 65.3 46 0.00099 24.2 7.3 44 69-114 5-51 (253)
315 PRK07063 short chain dehydroge 64.3 54 0.0012 24.0 7.5 45 69-115 5-52 (260)
316 KOG4589 Cell division protein 63.5 12 0.00026 28.1 3.7 32 70-101 69-103 (232)
317 COG1889 NOP1 Fibrillarin-like 63.5 52 0.0011 24.9 7.1 70 48-119 50-126 (231)
318 PLN02494 adenosylhomocysteinas 63.5 14 0.00029 31.1 4.5 35 68-102 251-287 (477)
319 PRK01368 murD UDP-N-acetylmura 62.8 12 0.00025 31.0 4.0 33 70-102 5-38 (454)
320 COG0499 SAM1 S-adenosylhomocys 62.6 22 0.00048 29.2 5.3 57 46-110 190-249 (420)
321 PRK04690 murD UDP-N-acetylmura 62.1 14 0.0003 30.6 4.3 34 69-102 6-41 (468)
322 PRK07035 short chain dehydroge 62.0 51 0.0011 23.9 7.0 44 69-114 6-52 (252)
323 PLN02780 ketoreductase/ oxidor 61.5 45 0.00097 26.0 6.9 45 70-116 52-99 (320)
324 COG0286 HsdM Type I restrictio 61.5 31 0.00067 28.9 6.3 50 70-121 186-241 (489)
325 COG0773 MurC UDP-N-acetylmuram 61.1 8.9 0.00019 32.1 3.0 33 79-112 16-50 (459)
326 cd08230 glucose_DH Glucose deh 60.9 43 0.00093 26.0 6.7 32 69-100 171-204 (355)
327 cd01075 NAD_bind_Leu_Phe_Val_D 60.3 47 0.001 24.2 6.5 43 66-112 23-69 (200)
328 PRK07478 short chain dehydroge 60.0 65 0.0014 23.5 7.3 45 69-115 4-51 (254)
329 cd08300 alcohol_DH_class_III c 60.0 36 0.00079 26.7 6.2 34 69-102 185-221 (368)
330 PRK07523 gluconate 5-dehydroge 59.9 57 0.0012 23.8 7.0 44 69-115 8-55 (255)
331 KOG2918 Carboxymethyl transfer 59.7 14 0.00031 29.5 3.7 55 45-102 65-121 (335)
332 COG0863 DNA modification methy 59.2 64 0.0014 24.3 7.3 60 55-117 208-267 (302)
333 PF06564 YhjQ: YhjQ protein; 59.2 11 0.00025 28.7 3.1 24 80-103 12-41 (243)
334 PRK06139 short chain dehydroge 59.2 56 0.0012 25.6 7.1 48 69-118 5-55 (330)
335 KOG2671 Putative RNA methylase 58.9 3.7 8.1E-05 33.4 0.4 39 68-108 206-244 (421)
336 PF11968 DUF3321: Putative met 58.9 13 0.00028 28.1 3.2 49 52-102 29-82 (219)
337 PRK08306 dipicolinate synthase 58.8 54 0.0012 25.4 6.9 36 67-102 148-185 (296)
338 PRK07097 gluconate 5-dehydroge 58.4 72 0.0016 23.5 7.4 46 68-115 7-55 (265)
339 PRK07792 fabG 3-ketoacyl-(acyl 58.2 65 0.0014 24.6 7.3 35 68-102 9-46 (306)
340 TIGR03451 mycoS_dep_FDH mycoth 58.0 21 0.00046 27.8 4.6 34 69-102 175-211 (358)
341 PLN02586 probable cinnamyl alc 57.7 22 0.00049 27.9 4.7 33 70-102 183-217 (360)
342 PRK08339 short chain dehydroge 57.2 51 0.0011 24.5 6.4 44 69-114 6-52 (263)
343 TIGR02440 FadJ fatty oxidation 57.0 25 0.00055 30.8 5.2 41 72-114 305-348 (699)
344 cd08301 alcohol_DH_plants Plan 56.8 26 0.00056 27.5 4.9 35 68-102 185-222 (369)
345 PRK00141 murD UDP-N-acetylmura 56.6 14 0.00031 30.5 3.5 36 67-102 11-48 (473)
346 TIGR01202 bchC 2-desacetyl-2-h 56.3 21 0.00045 27.4 4.2 40 70-111 144-186 (308)
347 TIGR01470 cysG_Nterm siroheme 56.1 31 0.00066 25.4 4.9 40 69-108 7-48 (205)
348 PRK02318 mannitol-1-phosphate 55.6 20 0.00044 28.8 4.1 39 73-113 2-43 (381)
349 PF04072 LCM: Leucine carboxyl 55.5 68 0.0015 22.8 6.5 45 72-117 80-124 (183)
350 PRK06194 hypothetical protein; 55.1 74 0.0016 23.6 7.0 34 69-102 4-40 (287)
351 PRK12826 3-ketoacyl-(acyl-carr 54.8 77 0.0017 22.7 7.0 32 70-102 5-40 (251)
352 COG1250 FadB 3-hydroxyacyl-CoA 54.8 28 0.00061 27.5 4.7 43 72-117 4-49 (307)
353 PRK12771 putative glutamate sy 54.7 18 0.00038 30.6 3.8 33 69-101 135-169 (564)
354 PRK01710 murD UDP-N-acetylmura 54.6 15 0.00033 30.1 3.4 32 70-102 13-47 (458)
355 PF04672 Methyltransf_19: S-ad 54.4 16 0.00034 28.4 3.2 44 72-117 70-118 (267)
356 PRK05866 short chain dehydroge 54.3 76 0.0017 24.1 7.0 44 69-114 38-84 (293)
357 PRK06035 3-hydroxyacyl-CoA deh 54.3 35 0.00076 26.1 5.1 39 73-113 5-45 (291)
358 PRK07985 oxidoreductase; Provi 54.2 86 0.0019 23.8 7.3 33 69-101 47-82 (294)
359 PLN02178 cinnamyl-alcohol dehy 53.6 32 0.00069 27.4 5.0 33 70-102 178-212 (375)
360 PRK08293 3-hydroxybutyryl-CoA 53.1 40 0.00088 25.7 5.3 40 73-114 5-46 (287)
361 cd08277 liver_alcohol_DH_like 53.0 46 0.001 26.0 5.8 35 68-102 182-219 (365)
362 PRK07791 short chain dehydroge 52.9 90 0.002 23.5 7.2 34 69-102 4-40 (286)
363 PRK12823 benD 1,6-dihydroxycyc 52.9 87 0.0019 22.8 7.2 34 69-102 6-42 (260)
364 PRK08085 gluconate 5-dehydroge 52.9 86 0.0019 22.8 6.9 44 69-114 7-53 (254)
365 PRK11154 fadJ multifunctional 52.9 33 0.00073 30.0 5.3 42 72-115 310-354 (708)
366 PRK12837 3-ketosteroid-delta-1 52.5 16 0.00034 30.5 3.2 30 73-102 9-39 (513)
367 KOG0022 Alcohol dehydrogenase, 52.5 38 0.00083 27.4 5.1 36 68-103 190-228 (375)
368 COG1004 Ugd Predicted UDP-gluc 52.3 20 0.00042 29.6 3.5 30 74-103 3-34 (414)
369 PRK11730 fadB multifunctional 52.2 35 0.00076 30.0 5.3 41 72-114 314-356 (715)
370 PRK08589 short chain dehydroge 52.2 91 0.002 23.2 7.1 33 69-101 4-39 (272)
371 PRK08277 D-mannonate oxidoredu 52.0 72 0.0016 23.6 6.5 45 68-114 7-54 (278)
372 PRK08993 2-deoxy-D-gluconate 3 52.0 61 0.0013 23.7 6.0 34 69-102 8-44 (253)
373 KOG3178 Hydroxyindole-O-methyl 51.9 19 0.00041 29.0 3.3 41 72-113 179-219 (342)
374 PRK03806 murD UDP-N-acetylmura 51.9 25 0.00055 28.4 4.2 34 70-103 5-40 (438)
375 PLN03154 putative allyl alcoho 51.9 75 0.0016 24.8 6.8 35 68-102 156-193 (348)
376 cd05191 NAD_bind_amino_acid_DH 51.8 55 0.0012 20.2 5.1 34 67-100 19-55 (86)
377 TIGR01832 kduD 2-deoxy-D-gluco 51.7 61 0.0013 23.4 5.9 34 69-102 3-39 (248)
378 PRK01390 murD UDP-N-acetylmura 51.5 23 0.0005 28.9 3.9 34 69-102 7-42 (460)
379 PF00670 AdoHcyase_NAD: S-aden 51.2 53 0.0011 23.6 5.3 36 67-102 19-56 (162)
380 cd08254 hydroxyacyl_CoA_DH 6-h 51.2 35 0.00077 25.8 4.7 40 69-110 164-205 (338)
381 PRK07819 3-hydroxybutyryl-CoA 51.1 43 0.00093 25.8 5.2 39 73-113 7-47 (286)
382 PRK06701 short chain dehydroge 51.1 97 0.0021 23.5 7.1 35 68-102 43-80 (290)
383 PF03492 Methyltransf_7: SAM d 51.1 14 0.00031 29.3 2.6 33 71-103 17-67 (334)
384 PRK06720 hypothetical protein; 50.9 86 0.0019 22.1 7.1 34 69-102 14-50 (169)
385 PRK12481 2-deoxy-D-gluconate 3 50.3 62 0.0013 23.7 5.8 34 69-102 6-42 (251)
386 PRK05476 S-adenosyl-L-homocyst 50.3 24 0.00053 29.2 3.8 36 68-103 209-246 (425)
387 cd08238 sorbose_phosphate_red 50.3 31 0.00066 27.7 4.4 42 69-112 174-221 (410)
388 PRK05854 short chain dehydroge 50.2 1.1E+02 0.0025 23.4 7.7 34 69-102 12-48 (313)
389 TIGR03206 benzo_BadH 2-hydroxy 50.1 94 0.002 22.3 7.2 33 70-102 2-37 (250)
390 cd08255 2-desacetyl-2-hydroxye 49.6 77 0.0017 23.3 6.3 35 68-102 95-132 (277)
391 PRK08213 gluconate 5-dehydroge 49.2 1E+02 0.0022 22.5 7.0 44 69-115 10-57 (259)
392 PRK07814 short chain dehydroge 48.8 1.1E+02 0.0023 22.6 7.3 44 69-114 8-54 (263)
393 PRK08643 acetoin reductase; Va 48.6 1E+02 0.0022 22.4 7.1 42 71-114 2-46 (256)
394 PRK07889 enoyl-(acyl carrier p 48.6 61 0.0013 24.0 5.6 34 69-102 5-43 (256)
395 PRK08303 short chain dehydroge 48.4 1.1E+02 0.0023 23.6 7.0 33 69-101 6-41 (305)
396 PF01262 AlaDh_PNT_C: Alanine 48.1 35 0.00076 23.9 4.0 40 70-111 19-60 (168)
397 COG0078 ArgF Ornithine carbamo 48.0 1.4E+02 0.0031 23.8 7.7 70 51-120 131-208 (310)
398 PRK14192 bifunctional 5,10-met 47.7 52 0.0011 25.6 5.2 46 57-102 145-193 (283)
399 cd05188 MDR Medium chain reduc 47.5 1E+02 0.0022 22.1 6.8 40 69-110 133-174 (271)
400 PRK06398 aldose dehydrogenase; 46.9 47 0.001 24.5 4.7 31 69-99 4-37 (258)
401 PRK05786 fabG 3-ketoacyl-(acyl 46.8 98 0.0021 22.1 6.3 33 70-102 4-39 (238)
402 PLN02827 Alcohol dehydrogenase 46.4 45 0.00098 26.4 4.8 35 68-102 191-228 (378)
403 PRK07109 short chain dehydroge 46.3 1.3E+02 0.0027 23.5 7.2 45 69-115 6-53 (334)
404 PRK07530 3-hydroxybutyryl-CoA 46.0 58 0.0013 24.8 5.2 41 72-114 5-47 (292)
405 PRK06128 oxidoreductase; Provi 46.0 1.3E+02 0.0028 22.8 7.6 34 69-102 53-89 (300)
406 PRK06113 7-alpha-hydroxysteroi 45.9 1.2E+02 0.0025 22.2 7.3 34 69-102 9-45 (255)
407 PRK12770 putative glutamate sy 45.8 35 0.00076 26.7 4.0 41 61-101 8-50 (352)
408 PRK07677 short chain dehydroge 45.7 1.2E+02 0.0025 22.1 6.9 31 72-102 2-35 (252)
409 KOG1122 tRNA and rRNA cytosine 45.5 74 0.0016 26.7 5.8 53 70-124 241-296 (460)
410 PRK06949 short chain dehydroge 45.5 1.1E+02 0.0025 22.0 7.1 42 69-112 7-51 (258)
411 PRK08217 fabG 3-ketoacyl-(acyl 45.0 1.1E+02 0.0025 21.8 7.2 34 69-102 3-39 (253)
412 PRK06935 2-deoxy-D-gluconate 3 44.8 1.2E+02 0.0026 22.1 7.2 34 69-102 13-49 (258)
413 cd08296 CAD_like Cinnamyl alco 44.6 1E+02 0.0023 23.5 6.5 35 68-102 161-197 (333)
414 PRK06125 short chain dehydroge 44.6 1.1E+02 0.0024 22.4 6.4 44 69-114 5-51 (259)
415 TIGR00518 alaDH alanine dehydr 44.4 56 0.0012 26.2 5.1 33 70-102 166-200 (370)
416 KOG2305 3-hydroxyacyl-CoA dehy 44.4 65 0.0014 25.1 5.0 41 74-116 6-48 (313)
417 PRK06057 short chain dehydroge 44.2 84 0.0018 22.9 5.7 34 69-102 5-41 (255)
418 PRK07533 enoyl-(acyl carrier p 44.1 1.1E+02 0.0023 22.6 6.3 35 68-102 7-46 (258)
419 PRK04308 murD UDP-N-acetylmura 44.0 49 0.0011 26.9 4.7 34 70-103 4-39 (445)
420 PF00070 Pyr_redox: Pyridine n 44.0 48 0.001 20.0 3.7 41 80-120 6-56 (80)
421 PRK06914 short chain dehydroge 43.8 1.3E+02 0.0028 22.2 7.2 42 71-114 3-47 (280)
422 PRK07904 short chain dehydroge 43.8 1.3E+02 0.0028 22.2 6.9 46 70-116 7-56 (253)
423 PRK07890 short chain dehydroge 43.7 1.2E+02 0.0027 21.9 7.5 33 70-102 4-39 (258)
424 PRK10309 galactitol-1-phosphat 43.4 50 0.0011 25.5 4.5 34 69-102 159-195 (347)
425 PRK07062 short chain dehydroge 43.0 1.3E+02 0.0028 22.0 7.6 34 69-102 6-42 (265)
426 PRK09260 3-hydroxybutyryl-CoA 42.7 64 0.0014 24.6 5.0 39 73-113 3-43 (288)
427 PRK09422 ethanol-active dehydr 42.6 96 0.0021 23.5 6.0 35 68-102 160-197 (338)
428 PRK14106 murD UDP-N-acetylmura 42.3 99 0.0022 25.0 6.3 32 69-102 3-38 (450)
429 cd08231 MDR_TM0436_like Hypoth 42.3 1.2E+02 0.0026 23.5 6.5 33 70-102 177-212 (361)
430 PF01488 Shikimate_DH: Shikima 42.1 98 0.0021 20.8 5.4 35 68-102 9-46 (135)
431 PRK02006 murD UDP-N-acetylmura 42.1 60 0.0013 26.9 5.0 33 70-102 6-40 (498)
432 PRK06138 short chain dehydroge 42.1 1.3E+02 0.0028 21.6 6.8 34 69-102 3-39 (252)
433 PRK05650 short chain dehydroge 41.9 1.4E+02 0.003 22.0 7.0 30 73-102 2-34 (270)
434 PRK06200 2,3-dihydroxy-2,3-dih 41.8 96 0.0021 22.7 5.7 34 69-102 4-40 (263)
435 PF00899 ThiF: ThiF family; I 41.7 31 0.00067 23.1 2.8 32 71-102 2-36 (135)
436 PF07015 VirC1: VirC1 protein; 41.6 35 0.00077 25.9 3.3 29 88-117 26-54 (231)
437 KOG0821 Predicted ribosomal RN 41.4 91 0.002 24.2 5.4 49 65-115 45-94 (326)
438 COG0771 MurD UDP-N-acetylmuram 41.3 50 0.0011 27.6 4.4 36 69-104 5-42 (448)
439 cd08232 idonate-5-DH L-idonate 41.3 1.3E+02 0.0027 22.9 6.5 33 70-102 165-200 (339)
440 PRK05808 3-hydroxybutyryl-CoA 41.3 69 0.0015 24.3 4.9 37 73-111 5-43 (282)
441 COG4301 Uncharacterized conser 41.1 1.5E+02 0.0032 23.4 6.6 59 55-115 63-127 (321)
442 PRK07236 hypothetical protein; 41.0 37 0.00081 26.8 3.6 31 72-102 7-39 (386)
443 TIGR02437 FadB fatty oxidation 40.9 64 0.0014 28.4 5.2 42 72-115 314-357 (714)
444 PRK08703 short chain dehydroge 40.8 1.4E+02 0.0029 21.5 6.7 34 69-102 4-40 (239)
445 TIGR01081 mpl UDP-N-acetylmura 40.6 29 0.00062 28.3 2.9 24 80-103 9-34 (448)
446 PRK07066 3-hydroxybutyryl-CoA 40.4 83 0.0018 24.9 5.4 39 72-112 8-48 (321)
447 PRK04523 N-acetylornithine car 40.1 1.9E+02 0.0041 23.0 8.5 69 52-120 147-231 (335)
448 PRK06129 3-hydroxyacyl-CoA deh 40.0 78 0.0017 24.4 5.1 36 73-112 4-43 (308)
449 TIGR02354 thiF_fam2 thiamine b 39.9 35 0.00076 25.0 3.0 34 68-101 18-54 (200)
450 TIGR01087 murD UDP-N-acetylmur 39.5 36 0.00078 27.5 3.3 29 74-103 2-33 (433)
451 PRK06603 enoyl-(acyl carrier p 39.5 1.4E+02 0.0031 22.0 6.4 34 69-102 6-44 (260)
452 PRK07231 fabG 3-ketoacyl-(acyl 39.4 1.4E+02 0.0031 21.3 6.6 34 69-102 3-39 (251)
453 PF00743 FMO-like: Flavin-bind 39.1 35 0.00077 28.9 3.3 31 72-102 2-34 (531)
454 cd02040 NifH NifH gene encodes 39.1 29 0.00062 25.8 2.5 21 83-103 20-40 (270)
455 PRK03525 crotonobetainyl-CoA:c 39.0 35 0.00075 27.8 3.1 32 68-99 11-44 (405)
456 PRK04663 murD UDP-N-acetylmura 38.9 60 0.0013 26.4 4.5 34 70-103 5-43 (438)
457 PRK12845 3-ketosteroid-delta-1 38.6 36 0.00077 29.0 3.2 29 73-101 18-47 (564)
458 PF01795 Methyltransf_5: MraW 38.6 43 0.00094 26.6 3.5 52 70-125 20-73 (310)
459 COG2072 TrkA Predicted flavopr 38.6 51 0.0011 27.1 4.1 37 66-102 170-208 (443)
460 PRK10037 cell division protein 38.5 27 0.00058 26.1 2.2 20 83-102 21-40 (250)
461 COG0270 Dcm Site-specific DNA 38.4 88 0.0019 24.6 5.3 42 72-115 4-46 (328)
462 TIGR02825 B4_12hDH leukotriene 38.2 83 0.0018 23.9 5.0 35 68-102 136-173 (325)
463 KOG0023 Alcohol dehydrogenase, 38.1 86 0.0019 25.4 5.0 33 70-102 181-215 (360)
464 PRK05872 short chain dehydroge 38.1 1.3E+02 0.0027 22.8 6.0 35 68-102 6-43 (296)
465 KOG1098 Putative SAM-dependent 38.1 68 0.0015 28.3 4.7 35 68-102 42-79 (780)
466 PRK04176 ribulose-1,5-biphosph 38.0 74 0.0016 24.1 4.6 30 73-102 27-58 (257)
467 COG4844 Uncharacterized protei 37.8 55 0.0012 20.3 3.1 48 70-119 27-77 (78)
468 PRK12548 shikimate 5-dehydroge 37.7 1.9E+02 0.0041 22.3 8.2 44 58-102 113-160 (289)
469 KOG1207 Diacetyl reductase/L-x 37.7 1.1E+02 0.0025 22.8 5.3 35 69-103 5-42 (245)
470 PRK07454 short chain dehydroge 37.7 1.5E+02 0.0033 21.2 6.9 32 70-102 5-40 (241)
471 KOG3045 Predicted RNA methylas 37.5 44 0.00095 26.4 3.3 17 70-86 180-196 (325)
472 cd05213 NAD_bind_Glutamyl_tRNA 37.5 1.5E+02 0.0033 23.0 6.4 34 69-102 176-212 (311)
473 COG0300 DltE Short-chain dehyd 37.4 1.9E+02 0.0042 22.3 7.2 56 70-127 5-64 (265)
474 PF13450 NAD_binding_8: NAD(P) 37.2 62 0.0014 19.2 3.4 14 89-102 16-29 (68)
475 TIGR02441 fa_ox_alpha_mit fatt 36.8 76 0.0017 28.1 5.0 42 72-115 336-379 (737)
476 PRK09273 hypothetical protein; 36.8 49 0.0011 24.9 3.3 25 74-98 66-90 (211)
477 PRK10458 DNA cytosine methylas 36.7 83 0.0018 26.4 5.0 42 71-114 88-130 (467)
478 PLN02514 cinnamyl-alcohol dehy 36.6 82 0.0018 24.6 4.8 33 70-102 180-214 (357)
479 PRK06171 sorbitol-6-phosphate 36.5 86 0.0019 23.0 4.7 32 69-100 7-41 (266)
480 PRK07121 hypothetical protein; 36.5 43 0.00094 27.6 3.4 30 73-102 22-53 (492)
481 PRK08265 short chain dehydroge 36.4 1.3E+02 0.0029 22.0 5.8 34 69-102 4-40 (261)
482 PF08515 TGF_beta_GS: Transfor 36.4 20 0.00044 18.3 0.9 9 78-86 14-22 (29)
483 PRK06153 hypothetical protein; 36.4 40 0.00086 27.7 3.0 34 69-102 174-210 (393)
484 cd08294 leukotriene_B4_DH_like 36.4 88 0.0019 23.6 4.9 35 68-102 141-178 (329)
485 cd08285 NADP_ADH NADP(H)-depen 36.4 87 0.0019 24.1 4.9 34 69-102 165-201 (351)
486 PRK07576 short chain dehydroge 36.1 1.8E+02 0.0038 21.5 7.4 34 69-102 7-43 (264)
487 TIGR03325 BphB_TodD cis-2,3-di 36.0 1.3E+02 0.0029 22.0 5.7 34 69-102 3-39 (262)
488 PF04989 CmcI: Cephalosporin h 35.7 66 0.0014 24.0 3.9 51 48-102 11-70 (206)
489 PRK03803 murD UDP-N-acetylmura 35.7 73 0.0016 25.9 4.5 33 71-103 6-40 (448)
490 PRK05708 2-dehydropantoate 2-r 35.7 62 0.0013 25.1 3.9 38 72-111 3-42 (305)
491 cd08299 alcohol_DH_class_I_II_ 35.6 1.8E+02 0.004 22.8 6.7 35 68-102 188-225 (373)
492 PRK10083 putative oxidoreducta 35.5 1.7E+02 0.0037 22.2 6.4 35 68-102 158-196 (339)
493 TIGR01318 gltD_gamma_fam gluta 35.3 1.3E+02 0.0027 24.9 5.9 33 70-102 140-174 (467)
494 TIGR01381 E1_like_apg7 E1-like 35.3 44 0.00095 29.4 3.2 35 68-102 335-372 (664)
495 TIGR01813 flavo_cyto_c flavocy 35.3 45 0.00099 26.9 3.3 29 74-102 2-33 (439)
496 PRK08628 short chain dehydroge 35.2 1.7E+02 0.0038 21.2 7.0 34 69-102 5-41 (258)
497 PF07101 DUF1363: Protein of u 35.2 15 0.00033 24.4 0.4 13 74-86 6-18 (124)
498 COG1568 Predicted methyltransf 35.0 1.4E+02 0.0031 23.8 5.7 50 68-120 150-201 (354)
499 PRK08416 7-alpha-hydroxysteroi 35.0 1.8E+02 0.0039 21.3 7.7 33 69-101 6-41 (260)
500 PRK13230 nitrogenase reductase 34.8 35 0.00077 25.8 2.4 21 83-103 20-40 (279)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.82 E-value=4.8e-20 Score=133.17 Aligned_cols=90 Identities=42% Similarity=0.667 Sum_probs=54.4
Q ss_pred ceEEEEecCCCCCCceEeechHHHHHHHHHhc------cccCCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHH
Q 033085 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIE 105 (128)
Q Consensus 34 ~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~------~~~~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~ 105 (128)
..++.|.+....++|.++|+++.+|++|+..+ ...+++++|||||||+|++|+.++++ ..+|++||+++
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--- 79 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--- 79 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---
Confidence 45688999988899999999999999999984 56789999999999999999999999 45999999987
Q ss_pred HHHHHHHHHHHhC--CCCceEee
Q 033085 106 VLKNMRRVCEMNK--LNCRVNYR 126 (128)
Q Consensus 106 ~l~~~~~n~~~N~--l~~~v~~~ 126 (128)
++++++.|++.|+ ...++.+.
T Consensus 80 ~l~~l~~Ni~~N~~~~~~~v~v~ 102 (173)
T PF10294_consen 80 VLELLRRNIELNGSLLDGRVSVR 102 (173)
T ss_dssp HHHHHHHHHHTT--------EEE
T ss_pred hhHHHHHHHHhccccccccccCc
Confidence 9999999999998 55555543
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.59 E-value=1.7e-14 Score=112.23 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=74.2
Q ss_pred CceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHH
Q 033085 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 33 ~~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
..+.|.|.+.+..++|. .+.+....++|... ..++++|||+|||||+++|+++++|+ +|+++|+++. +++.++
T Consensus 128 ~~~~I~idPg~AFGTG~--H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~--Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGH--HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL--AVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSH--CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH--HHHHHH
T ss_pred CcEEEEECCCCcccCCC--CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH--HHHHHH
Confidence 46779999999899998 46888888888765 44778999999999999999999999 7999999994 999999
Q ss_pred HHHHHhCCCCceEe
Q 033085 112 RVCEMNKLNCRVNY 125 (128)
Q Consensus 112 ~n~~~N~l~~~v~~ 125 (128)
+|++.|++.+++..
T Consensus 202 ~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 202 ENAELNGVEDRIEV 215 (295)
T ss_dssp HHHHHTT-TTCEEE
T ss_pred HHHHHcCCCeeEEE
Confidence 99999999998754
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.3e-13 Score=105.78 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=71.4
Q ss_pred ceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 033085 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 34 ~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
.+.|+|.+.+..++|+| |.+..-.+++.... .++++|||+|||||+++|.++++|+ +|+++|+++. +++.+++
T Consensus 130 ~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~e 203 (300)
T COG2264 130 ELNIELDPGLAFGTGTH--PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARE 203 (300)
T ss_pred ceEEEEccccccCCCCC--hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHH
Confidence 67799999998889985 57777777776543 3789999999999999999999999 6999999985 9999999
Q ss_pred HHHHhCCCC
Q 033085 113 VCEMNKLNC 121 (128)
Q Consensus 113 n~~~N~l~~ 121 (128)
|+++|++..
T Consensus 204 Na~~N~v~~ 212 (300)
T COG2264 204 NARLNGVEL 212 (300)
T ss_pred HHHHcCCch
Confidence 999999984
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1.1e-13 Score=101.49 Aligned_cols=77 Identities=25% Similarity=0.415 Sum_probs=71.2
Q ss_pred CCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 45 ~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
+..+...|.+++.|++|+..+++..+|++|||+|+|+|++++.+++.|+ .|+.+|+.+. .+.+++.|++.|+.+-.+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~--~~~ai~lNa~angv~i~~ 131 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW--LEQAIRLNAAANGVSILF 131 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH--HHHHhhcchhhccceeEE
Confidence 4578899999999999999999999999999999999999999999998 7999999974 999999999999987444
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=4.7e-11 Score=85.70 Aligned_cols=67 Identities=28% Similarity=0.372 Sum_probs=58.3
Q ss_pred echHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 52 W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
=.++.+|++++... ++++|||+|||+|.+++.+++.+. +|+++|.++ ++++.+++|+..|++.+ +.+
T Consensus 17 d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~~-v~~ 85 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLEN-VEV 85 (170)
T ss_dssp HHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCTT-EEE
T ss_pred CHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCccc-ccc
Confidence 34788999999875 567899999999999999999876 599999998 59999999999999985 443
No 6
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.20 E-value=7.9e-11 Score=89.57 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=69.4
Q ss_pred EEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHH
Q 033085 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 37 ~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~-~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+.|.|.. .|++.--++++|+.|+... ..++|||||||+|++++++++. . ++|+++++.+ ++.+.|++|+
T Consensus 18 ~~I~q~~---~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv 88 (248)
T COG4123 18 FFIIQDR---CGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNV 88 (248)
T ss_pred eEEEeCC---CccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHH
Confidence 6677654 6777777999999999653 2669999999999999999987 3 4899999997 6999999999
Q ss_pred HHhCCCCceEee
Q 033085 115 EMNKLNCRVNYR 126 (128)
Q Consensus 115 ~~N~l~~~v~~~ 126 (128)
+.|++.+++.+.
T Consensus 89 ~ln~l~~ri~v~ 100 (248)
T COG4123 89 ALNPLEERIQVI 100 (248)
T ss_pred HhCcchhceeEe
Confidence 999999998764
No 7
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.19 E-value=4.7e-11 Score=94.06 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=70.1
Q ss_pred eEEEEecCCCCCCceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEe
Q 033085 21 VSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTD 99 (128)
Q Consensus 21 ~~~~~f~~~~~~~~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD 99 (128)
...++|.++.. +.|++.+.... ..+..--..+.++.+.|+++.|||+|||||++++++|+.|+ +|+++|
T Consensus 21 ~~~~Yf~sY~~-----~~iheeML~D~-----VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe 90 (346)
T KOG1499|consen 21 SDDYYFDSYAH-----FGIHEEMLKDS-----VRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVE 90 (346)
T ss_pred hhhhhhhhhhc-----hHHHHHHHhhh-----hhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEe
Confidence 45567776655 66666552210 01111112366778899999999999999999999999999 899999
Q ss_pred cCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 100 DSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 100 ~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+. +.+.+.+.++.|++.+.|..
T Consensus 91 ~S~---ia~~a~~iv~~N~~~~ii~v 113 (346)
T KOG1499|consen 91 ASS---IADFARKIVKDNGLEDVITV 113 (346)
T ss_pred chH---HHHHHHHHHHhcCccceEEE
Confidence 986 89999999999999998765
No 8
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.19 E-value=2.1e-10 Score=88.81 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=70.2
Q ss_pred CceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHH
Q 033085 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 33 ~~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
..+.+.|.+.+..++|.+ +.+....+++... ...+++|||+|||+|++++.+++.|+ +|+++|.++ .+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 356688888887778875 5666666666543 23678999999999999999999887 899999998 4999999
Q ss_pred HHHHHhCCCCceEe
Q 033085 112 RVCEMNKLNCRVNY 125 (128)
Q Consensus 112 ~n~~~N~l~~~v~~ 125 (128)
+|+..|++.+++..
T Consensus 200 ~n~~~n~~~~~~~~ 213 (288)
T TIGR00406 200 KNAELNQVSDRLQV 213 (288)
T ss_pred HHHHHcCCCcceEE
Confidence 99999999876543
No 9
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=2.3e-10 Score=86.75 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHH
Q 033085 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 33 ~~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
..+.+.|.+.+..++|. ++.+..+.+++... ...+++|||+|||+|++++.+++.|+ +|+++|.++ .+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~--~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP--QAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 35668888887777777 66777777777653 23678999999999999999999887 599999998 5999999
Q ss_pred HHHHHhCCCCceE
Q 033085 112 RVCEMNKLNCRVN 124 (128)
Q Consensus 112 ~n~~~N~l~~~v~ 124 (128)
+|+..|++.+++.
T Consensus 160 ~n~~~~~~~~~~~ 172 (250)
T PRK00517 160 ENAELNGVELNVY 172 (250)
T ss_pred HHHHHcCCCceEE
Confidence 9999999965554
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.15 E-value=2.3e-10 Score=75.62 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=49.6
Q ss_pred CCCeEEEecccCChHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~--~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
++.+|||||||+|..++.+++ .+.+|+++|+++ ++++.+++++..++..+++...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~ 57 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFV 57 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEE
Confidence 467999999999999999999 678999999998 5999999999889988888764
No 11
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-09 Score=79.96 Aligned_cols=53 Identities=32% Similarity=0.331 Sum_probs=47.1
Q ss_pred ccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 65 ~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
....+.|+.|+|||||||++++.++.+|+ +|+++|.++ ++++.+++|+..++.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g 93 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLG 93 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCC
Confidence 34567899999999999999999999998 899999998 699999999998443
No 12
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.6e-09 Score=83.89 Aligned_cols=66 Identities=27% Similarity=0.322 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
.+..|.+.+...... ...+|||+|||||.+++.+++.+. +|+++|+++ ++++.|++|++.|++ .++
T Consensus 95 dTe~Lve~~l~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~l-~~~ 162 (280)
T COG2890 95 DTELLVEAALALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNGL-VRV 162 (280)
T ss_pred chHHHHHHHHHhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcCC-ccE
Confidence 466666664421111 111799999999999999999876 899999998 599999999999998 443
No 13
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.5e-10 Score=81.99 Aligned_cols=71 Identities=30% Similarity=0.527 Sum_probs=64.5
Q ss_pred ceEeechHHHHHHHHHhccccCCCCeEEEeccc-CChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 48 G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~G-tGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
...+||+..+|+.++..++..++|++|||||.| ||+.|+++|.... .|.+||.+. +.+++.++.+..|..+
T Consensus 7 nvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s 80 (201)
T KOG3201|consen 7 NVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMAS 80 (201)
T ss_pred cEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhccccc
Confidence 447999999999999999999999999999999 9999999998754 799999998 5999999999999554
No 14
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.93 E-value=7.7e-09 Score=75.74 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=54.4
Q ss_pred HHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 56 ~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+...+..-....+.+.++|||+||||.+|+.++..|+ +|+++|.++ .+++.+++|++.|++.+++.+
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCcccEEE
Confidence 33333333222345788999999999999999999998 899999998 599999999999999765543
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.89 E-value=1.2e-08 Score=73.46 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.+..|.+++.. .++++|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|++.|++..
T Consensus 7 d~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~ 68 (179)
T TIGR00537 7 DSLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVGL 68 (179)
T ss_pred cHHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCce
Confidence 34566666643 2457899999999999999999888999999998 59999999999998753
No 16
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.86 E-value=6.6e-09 Score=82.34 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=54.3
Q ss_pred hccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+...|+++.|||+|||+|++++++++.|+ +|++++-+. |.+.+++.++.|++.++|.+
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~---MAqyA~~Lv~~N~~~~rItV 230 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE---MAQYARKLVASNNLADRITV 230 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH---HHHHHHHHHhcCCccceEEE
Confidence 355689999999999999999999999998 899999975 99999999999999999875
No 17
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.1e-08 Score=79.63 Aligned_cols=62 Identities=29% Similarity=0.358 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
++.+|.+-+.. ..+.+|||||||.|.+|+.+++... +++++|.+. .+++.+++|++.|+++.
T Consensus 146 GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 146 GSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVEN 209 (300)
T ss_pred HHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCCc
Confidence 45555544432 2333899999999999999999875 899999998 49999999999999987
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.85 E-value=1.6e-08 Score=74.05 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=45.3
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.+.+|||+|||+|..++.+++.|.+|+++|.++ ++++.+++++..++++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v 79 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPL 79 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCc
Confidence 456999999999999999999999999999997 59999999998888763
No 19
>PRK14968 putative methyltransferase; Provisional
Probab=98.84 E-value=2.2e-08 Score=71.61 Aligned_cols=65 Identities=26% Similarity=0.310 Sum_probs=55.9
Q ss_pred eechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 51 ~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.|+.+.+|.+++.. .++++|||+|||+|..++.+++.+.+|+++|.++ ++++.+++|+..|++..
T Consensus 8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~ 72 (188)
T PRK14968 8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINP--YAVECAKCNAKLNNIRN 72 (188)
T ss_pred cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCH--HHHHHHHHHHHHcCCCC
Confidence 46677778887754 3677999999999999999998888999999997 59999999999998864
No 20
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=98.84 E-value=6.2e-09 Score=79.26 Aligned_cols=80 Identities=34% Similarity=0.652 Sum_probs=61.1
Q ss_pred EEEecCCCCCCceEeechHHHHHHHHHhccc------c---CC--CCeEEEecccCChHHHHHhh-cCCEEEEEecCChH
Q 033085 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRY------R---FS--GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRI 104 (128)
Q Consensus 37 ~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~------~---~~--~~~vLELG~GtGl~~l~~a~-~~~~v~~tD~~~~~ 104 (128)
..+...........+|+.+..++.++..+.. . ++ ..+|||||+|||++|+.+|+ .+++|..||...
T Consensus 42 ~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-- 119 (248)
T KOG2793|consen 42 TVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-- 119 (248)
T ss_pred eecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh--
Confidence 4444444557888999999999999886543 1 22 44799999999999999998 677999999987
Q ss_pred HHHHHHHHHHHHhCC
Q 033085 105 EVLKNMRRVCEMNKL 119 (128)
Q Consensus 105 ~~l~~~~~n~~~N~l 119 (128)
.+.++..|...|++
T Consensus 120 -~~~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 120 -VVENLKFNRDKNNI 133 (248)
T ss_pred -hHHHHHHhhhhhhh
Confidence 77777776554443
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.80 E-value=3.6e-08 Score=72.23 Aligned_cols=53 Identities=28% Similarity=0.443 Sum_probs=45.5
Q ss_pred CCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+|||+|||+|..++.+++. +.+|+++|.++ ++++.+++|++.|++++ +++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~--~~l~~A~~~~~~~~l~~-i~~ 99 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG--KKIAFLREVAAELGLKN-VTV 99 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHcCCCC-EEE
Confidence 3789999999999999988763 45999999998 59999999999999865 544
No 22
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.78 E-value=2.8e-08 Score=79.89 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=51.7
Q ss_pred eechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 51 ~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+=.++.+|.+++... .+.+|||||||+|.+++.+++.+ .+|+++|.++ .+++.+++|++.|+..
T Consensus 213 LD~GtrllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 213 LDIGARFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPE 278 (378)
T ss_pred cChHHHHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCcc
Confidence 345677777766432 23589999999999999999875 4899999997 4999999999999864
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=98.77 E-value=3.5e-08 Score=73.51 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 53 ~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
..+..|++++.... ...+.+|||+|||+|.+++.+++.+. +|+++|.++ ++++.+++|+..|++..
T Consensus 20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~ 86 (223)
T PRK14967 20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDV 86 (223)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCee
Confidence 35778888876432 33567999999999999999998876 899999998 59999999999988753
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.77 E-value=4e-08 Score=68.80 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=44.9
Q ss_pred CCCeEEEecccCChHHHHHh-hc--CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a-~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++.+|||+|||+|..++.++ +. +.+++++|+++ ++++.++.+++.+++. ++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~-ni~~ 58 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLD-NIEF 58 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTST-TEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhccccccccc-ccce
Confidence 46799999999999999999 44 45999999998 5999999999999998 4543
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.76 E-value=8.3e-08 Score=74.15 Aligned_cols=50 Identities=28% Similarity=0.437 Sum_probs=45.3
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
++.+|||+|||+|..++.+++.|.+|+++|.++ ++++.++++++.+++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~--~ai~~~~~~~~~~~l~v 169 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQ--QSLENLQEIAEKENLNI 169 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCce
Confidence 456999999999999999999999999999997 59999999999988843
No 26
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.76 E-value=4.2e-08 Score=76.79 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+|||+|||+|..++.+++.+.+|+++|.++ ++++.+++|++.|++. ++.+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~-~v~~ 225 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLT-NVQF 225 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCC-ceEE
Confidence 567999999999999999999988999999998 5999999999999984 4443
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.76 E-value=3.1e-08 Score=72.08 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=45.5
Q ss_pred CCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
+.+.+|||+|||+|.+++.++..+ .+|+++|.++ ++++.+++|++.+++.+ +.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~-i~~ 96 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNN-VEI 96 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCC-eEE
Confidence 357899999999999999888764 4899999998 59999999999998853 443
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=6.5e-08 Score=73.35 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=48.2
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++.+|||+|||+|..++.+++.+.+|+++|.++ ++++.+++++..+++.+++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g~~~~v~~ 97 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKGVSDNMQF 97 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccceEE
Confidence 456999999999999999999999999999998 599999999999888766554
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.75 E-value=5e-08 Score=71.58 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=45.0
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.+|||+|||+|..++.+++.|.+|+++|.++ ++++.+++++..+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~--~~i~~a~~~~~~~~~~ 78 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNP--MSIANLERIKAAENLD 78 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 567999999999999999999999999999997 5999999999988875
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.74 E-value=6.7e-08 Score=74.84 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
...+|||+|||+|.+++.+++.. .+|+++|.++ ++++.+++|++.|++.+++.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~~~~~~~i~~~ 177 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIERHGLEDRVTLI 177 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEE
Confidence 34689999999999999999864 4899999997 5999999999999998766543
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.73 E-value=3.9e-08 Score=65.44 Aligned_cols=54 Identities=31% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCeEEEecccCChHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
|.+|||+|||+|...+.+++.+ .+++++|+++ ..++.++.|+..+++..++...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~~~~~~~ 55 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLDDRVEVI 55 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTTTTEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCCceEEEE
Confidence 4689999999999999999998 7999999998 5999999999999998776653
No 32
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.73 E-value=6.8e-08 Score=78.85 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+..|.+.+........+.+|||+|||+|..++.+++.+.+|+++|.++ ++++.+++|++.|++.
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLD 345 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 456666665543344677999999999999999999888999999998 5999999999999985
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.72 E-value=1.1e-07 Score=68.78 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..+.+|||+|||+|.+++.+++.+ .+|+++|.++ ++++.+++|++.+++.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~ 81 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCG 81 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 367799999999999999988865 4899999997 5999999999998875
No 34
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.72 E-value=8e-08 Score=71.19 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 57 ~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+...+.......++.+|||+|||+|..+..+++... +|+++|.++ ++++.+++|++.+++.
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~--~~~~~A~~~~~~~g~~ 128 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP--ELAEKAERRLRKLGLD 128 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHCCCC
Confidence 3334444333345778999999999999999888743 599999997 5999999999999874
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.71 E-value=2.8e-08 Score=75.16 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=47.8
Q ss_pred CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.|++|||+|||.|+++.-+|+.|++|+++|.++ ++|+.++..+..|++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhcccc
Confidence 6899999999999999999999999999999998 5999999999999987
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=1.2e-07 Score=69.93 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 56 ~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
..+..++........+.+|||+|||+|..+..+++. +.+|+++|.++ ++++.+++|+..+++.++++.
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~--~~~~~a~~~l~~~~~~~~v~~ 128 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK--ELAIYAAQNIERLGYWGVVEV 128 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEE
Confidence 333444444333346779999999999999888764 34899999997 599999999999998765544
No 37
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=2.1e-08 Score=77.36 Aligned_cols=60 Identities=43% Similarity=0.737 Sum_probs=53.4
Q ss_pred CCceEeechHHHHHHHHHhc---cccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHH
Q 033085 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVL 107 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~---~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l 107 (128)
..|+++|.++..|..++... .-.+.+++|||||||+|+.++.+...++ .+.+.|++.. .+
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~--vl 152 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAE--VL 152 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchh--he
Confidence 58999999999999999854 4577999999999999999999999985 8999999973 55
No 38
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.69 E-value=5.4e-08 Score=76.75 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.7
Q ss_pred CCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHh-CCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N-~l~~~v~~~ 126 (128)
.+.++||+|||+|.+..+++.. +.+++++|+++ .+++.|+.|++.| ++.++|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhccCCcCcEEEE
Confidence 4569999999998777666543 56999999997 5999999999999 899887653
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.68 E-value=1.7e-07 Score=68.56 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=47.9
Q ss_pred ccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
....+.+|||+|||+|.+++.+++. + .+|+++|.++ ++++.+++|++.|++.+++..
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~~~~v~~ 96 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGVLNNIVL 96 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCCeEE
Confidence 4457889999999999999988764 3 4899999998 599999999999997665554
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.68 E-value=1.6e-07 Score=69.49 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=47.5
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
..++.+|||+|||+|..+..+++.+.+|+++|.++ ++++.+++++..++...++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~ 107 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDVAGNVE 107 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceE
Confidence 34678999999999999999999888999999998 59999999998887654444
No 41
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.68 E-value=1.1e-07 Score=73.45 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcc-ccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 54 CSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 54 ~s~~l~~~i~~~~-~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+..|.+.+.... ......+|||+|||+|.+++.+++.. .+|+++|.++ ++++.+++|++.|++..++.++
T Consensus 97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEE
Confidence 4555555543221 11122689999999999999998864 4899999998 5999999999999987655543
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.67 E-value=2.4e-07 Score=61.73 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=43.9
Q ss_pred cCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
...+.+|||+|||+|..++.+++.. .+|+++|.++ .+++.+++|++.+++.
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVS 69 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCC
Confidence 3356799999999999999888763 4899999998 4999999999988775
No 43
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.66 E-value=1e-07 Score=79.20 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=46.2
Q ss_pred CCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
..+|||+|||+|.+++.+++. +.+|+++|.++ ++++.++.|++.|++.+++..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l~~~v~~~ 194 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEVTDRIQII 194 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCccceeee
Confidence 458999999999999988764 45899999997 5999999999999987766543
No 44
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.65 E-value=1.6e-07 Score=69.46 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCCeEEEecccCChHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.+|||||||+|.+++.++..+ .+|+++|.++ ++++.+++|++.|++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~ 102 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAG 102 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 56799999999999999655444 4999999997 5999999999999975
No 45
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.65 E-value=9.7e-08 Score=75.33 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=46.0
Q ss_pred CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
..+.+|||+|||+|.++..+++.|.+|+++|.++ ++++.++.++..+++..++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~ 183 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIE 183 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCccccee
Confidence 4677999999999999999999999999999998 59999999887766544443
No 46
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.65 E-value=1.3e-07 Score=75.04 Aligned_cols=66 Identities=24% Similarity=0.292 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++..|.+.+... ...+|||+|||+|.+++.+++.+. +|+++|.++ .+++.++.|++.|++..++..
T Consensus 184 gt~lLl~~l~~~----~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~--~Al~~A~~nl~~n~l~~~~~~ 251 (342)
T PRK09489 184 GSQLLLSTLTPH----TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA--AALESSRATLAANGLEGEVFA 251 (342)
T ss_pred HHHHHHHhcccc----CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCEEEE
Confidence 556666655432 234799999999999999998754 899999998 599999999999998765543
No 47
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.65 E-value=1.7e-07 Score=75.78 Aligned_cols=54 Identities=26% Similarity=0.267 Sum_probs=47.3
Q ss_pred CCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCC-CceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~-~~v~~ 125 (128)
++++|||+|||||..++.++..++ +|+++|.++ .+++.+++|+++|++. +++.+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~--~al~~a~~N~~~Ngl~~~~v~~ 275 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEF 275 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCcEEE
Confidence 678999999999999998777776 899999998 5999999999999996 45544
No 48
>PLN02244 tocopherol O-methyltransferase
Probab=98.64 E-value=2e-07 Score=73.77 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=47.8
Q ss_pred CCCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.++.+|||+|||+|..++.+++. +.+|+++|+++ .+++.+++++..+++.+++.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~ 172 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSF 172 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEE
Confidence 35679999999999999988875 77999999998 599999999999988766654
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.64 E-value=2.8e-07 Score=67.23 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=43.7
Q ss_pred CCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..+.+|||+|||+|..++.+++.. .+|+++|.++ ++++.+++|++.+++.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~ 90 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVK 90 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 367799999999999999888653 5899999997 5999999999998874
No 50
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.64 E-value=2.9e-07 Score=79.19 Aligned_cols=54 Identities=28% Similarity=0.232 Sum_probs=48.5
Q ss_pred CCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCC-CceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~-~~v~~ 125 (128)
++++|||||||||..++.+++.|+ +|+++|.++ .+++.+++|++.|++. +++.+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~ng~~~~~v~~ 593 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALNGLSGRQHRL 593 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCccceEE
Confidence 578999999999999999999887 699999998 5999999999999997 45544
No 51
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=65.76 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=45.1
Q ss_pred HHHHHHHhccccCCCCeEEEecccCCh-HHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 57 ~l~~~i~~~~~~~~~~~vLELG~GtGl-~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
.+++||..+....+++++||+|||+|. ++..+++.|..|+++|.++ +.++.++.+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~ 58 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL 58 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh
Confidence 477888776555567899999999997 9999999999999999998 477666655
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=2.1e-07 Score=72.18 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
+...-.+.+......-.|+++||+|||-|-+++.+|+. +.+|+++++++ ++.+.+++.++.-|+.+++.+
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEE
Confidence 34444455666666778999999999999999999987 68999999998 599999999999999976654
No 53
>PLN02672 methionine S-methyltransferase
Probab=98.63 E-value=1.3e-07 Score=84.29 Aligned_cols=66 Identities=23% Similarity=0.145 Sum_probs=53.7
Q ss_pred chHHHHHHHHHhccc-cCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 53 ~~s~~l~~~i~~~~~-~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.+..|.+.+...+. .+++++|||||||+|.+++.+++.. .+|+++|+++ ++++.+++|++.|+++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLNALD 168 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCcc
Confidence 457778877654332 3567799999999999999998864 4899999998 5999999999999764
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.63 E-value=1.8e-07 Score=72.16 Aligned_cols=71 Identities=23% Similarity=0.176 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+.....+.+......-.|.+|||+|||.|-+++.+++. |++|+++.+++ +..+.+++.++..++.+++.++
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSSSTEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCCCceEEE
Confidence 44555666776666778999999999999999999987 89999999997 5999999999999999876653
No 55
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.62 E-value=2.1e-07 Score=72.89 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=46.5
Q ss_pred CeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+|||+|||+|.+++.+++.. .+|+++|+++ ++++.+++|++.|++.+++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~~~l~~~i~~~ 189 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIERHGLEDRVTLI 189 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCcEEEE
Confidence 589999999999999998864 4899999998 5999999999999987766553
No 56
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.62 E-value=1.8e-07 Score=74.95 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.+||||+||+|.+++.++..+.+|+++|.++ ++++.+++|++.|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLD 281 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 567999999999999999998888999999998 5999999999999985
No 57
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.60 E-value=4.4e-08 Score=74.99 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=44.0
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.|++|||+|||+||++.-+|+.|++|+++|..+ +|++.|+...+.+-...
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~--~~V~vA~~h~~~dP~~~ 138 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASD--DMVEVANEHKKMDPVLE 138 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccH--HHHHHHHHhhhcCchhc
Confidence 468899999999999999999999999999998 59999999866655543
No 58
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.58 E-value=2.4e-07 Score=68.23 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=44.4
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
..+..++||||||.|--++++|+.|..|++.|.++ ..++.+++.+..++++-+.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~--~al~~l~~~a~~~~l~i~~ 81 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISP--VALEKLQRLAEEEGLDIRT 81 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSH--HHHHHHHHHHHHTT-TEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHhhcCceeEE
Confidence 44667999999999999999999999999999998 4999999999999988333
No 59
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.58 E-value=2.5e-07 Score=75.28 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=51.3
Q ss_pred chHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 53 ~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.+..+.+.+..... ++.+|||+|||+|.+++.+++. +.+|+++|.++ ++++.+++|++.|+..
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~r 301 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGAR 301 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCc
Confidence 456777777664322 4568999999999999988864 45899999997 5999999999988763
No 60
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.56 E-value=3.9e-07 Score=69.39 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhccc-cCCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 54 CSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 54 ~s~~l~~~i~~~~~-~~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
.+..|.+.+..... .....+|||+|||+|.+++.+++. +.+|+++|.++ ++++.+++|++.|+.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~~ 135 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAGG 135 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC
Confidence 46667666544221 112358999999999999988865 34899999998 599999999999874
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.55 E-value=2.8e-07 Score=69.73 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=45.1
Q ss_pred CCCeEEEecccCChHHHHHhh----cCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~----~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+|||+|||+|..++.+++ .+.+|+++|.++ +|++.+++++..+++..++.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~ 113 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDV 113 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEE
Confidence 567999999999999987776 245899999998 599999999998887665544
No 62
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.55 E-value=4.6e-07 Score=73.63 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=50.2
Q ss_pred HHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 56 ~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..|.+.+........+.+|||+|||+|..++.+++.+.+|+++|.++ ++++.+++|++.|++.
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~--~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP--ESVEKAQQNAELNGIA 340 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH--HHHHHHHHHHHHhCCC
Confidence 33444443322233557999999999999999999888999999998 5999999999999985
No 63
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.54 E-value=3.1e-07 Score=67.88 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=47.0
Q ss_pred CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.++.+|||+|||+|..+..+++.+.+|+++|.++ ++++.++++...+++..++.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~i~~ 116 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISP--QMVEEARERAPEAGLAGNITF 116 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccCcEE
Confidence 3567999999999999999999888999999997 599999999988877544443
No 64
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.54 E-value=5.8e-07 Score=66.25 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
++..+..++.......++.+|||+|||+|..+..+++.+.+|+++|.++ ++++.+++|++.+++.
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~ 126 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLH 126 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCC
Confidence 3334444444433444678999999999999998888877999999997 5999999999988775
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.53 E-value=3.7e-07 Score=67.21 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=44.6
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+|||+|||+|..++.+++.. .+|+++|.++ ++++.++++++.+++. +++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~-~v~~ 94 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLT-NLRL 94 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCC-CEEE
Confidence 45689999999999999888763 4799999998 5999999999999873 3443
No 66
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.8e-07 Score=66.32 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=49.2
Q ss_pred cccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
-..+.|++++|||||+|.+++.++-.++ .|++.|+++ ++++.+.+|+..-.++..+..
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvqidlLq 102 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQIDLLQ 102 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhhhheee
Confidence 4468999999999999999988888777 799999998 699999999988777655443
No 67
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=5.6e-07 Score=69.59 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=56.4
Q ss_pred eechHHHHHHHHHh---ccccCCCCeEEEecccCChHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 51 VWPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 51 ~W~~s~~l~~~i~~---~~~~~~~~~vLELG~GtGl~~l~~a~-~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
-|+. +.+.+++.. +...+++..+||+|||+|.+++.++. ++. .|+++|.++. ++..+.+|++.+.+.+++-.
T Consensus 127 RpET-EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~--Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 127 RPET-EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA--AIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred CccH-HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH--HHHHHHHHHHHHhhcCceEE
Confidence 3544 344444432 34456777899999999999997765 343 7999999985 99999999999999998866
Q ss_pred ec
Q 033085 126 RN 127 (128)
Q Consensus 126 ~~ 127 (128)
.+
T Consensus 204 ~~ 205 (328)
T KOG2904|consen 204 IH 205 (328)
T ss_pred Ee
Confidence 54
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.51 E-value=7e-07 Score=66.29 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
++..+..++.......++.+|||+|||+|..+..+++. + .+|+++|.++ ++++.+++|++.+++.
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~--~~~~~a~~~l~~~g~~ 127 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP--ELAEKAKKTLKKLGYD 127 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 44445555555444557889999999999999988875 3 4899999998 5999999999988874
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.51 E-value=5.7e-07 Score=70.79 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=42.6
Q ss_pred CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
.++.+|||+|||+|.+++.+++.|.+|+++|+++ +|++.++++....
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~~A~~~~~~~ 189 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVAEAERRAKEA 189 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhc
Confidence 3577999999999999999999999999999998 5999999998764
No 70
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.50 E-value=6.9e-07 Score=71.20 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.++|||+||+|.+++.+++...+|+++|.++ ++++.+++|++.|++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAANNID 245 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 4699999999999999998877999999998 5999999999999986
No 71
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.48 E-value=6.2e-07 Score=67.66 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+.++|||+|||+|..++.+++. ..+|+.+|.++ ++++.+++|++.+++.+++...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~~~i~~~ 125 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVDHKINFI 125 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEE
Confidence 35779999999999988876653 24899999998 5999999999999999877653
No 72
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.48 E-value=5.8e-07 Score=64.19 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=41.2
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
...+.+|||+|||+|.++..+++.+.+|+++|.++ .+++.+++|+..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~ 57 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAA 57 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhcc
Confidence 34567999999999999999999888999999998 499999998854
No 73
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.48 E-value=7.2e-07 Score=67.76 Aligned_cols=71 Identities=30% Similarity=0.348 Sum_probs=53.9
Q ss_pred echHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 52 W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+..+.+.+.......++.+|||+|||+|..++.+++.. .+|+++|.++ .+++.++.|+. +....++.+
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~~a~~n~~-~~~~~~i~~ 162 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALAVARRNAK-HGLGARVEF 162 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHH-hCCCCcEEE
Confidence 45567777777644334466799999999999999998875 5899999998 59999999998 444444433
No 74
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.47 E-value=9.2e-07 Score=70.66 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+..|.+++...... .+.++|||+||+|.+++.+++...+|+++|.++ ++++.+++|++.|++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGID 254 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 45555555442221 234799999999999998888777999999998 5999999999999985
No 75
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=5.8e-07 Score=67.83 Aligned_cols=62 Identities=21% Similarity=0.126 Sum_probs=51.9
Q ss_pred EeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHH-HHHHH
Q 033085 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRV 113 (128)
Q Consensus 50 ~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~-~~~~n 113 (128)
.++.++.-|..++......+++++|||+|||||..+..+++.|+ +|+++|.++. ++. .++.+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~--~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN--QLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH--HHHHHHhcC
Confidence 56788999999998776667899999999999999999999987 8999999984 444 45543
No 76
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.45 E-value=7.3e-07 Score=68.56 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 59 ~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++.+........+.+|||+|||+|.++..+++.+.+|+++|.++ ++++.+++++.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~ 85 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFA 85 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhc
Confidence 34444433444677999999999999999999888999999998 59999988764
No 77
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.44 E-value=1.5e-06 Score=64.71 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=50.1
Q ss_pred HHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 59 ~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+|+.......++.+|||+|||+|..+..+++.+.+|+++|.++ ++++.++.++..+++.
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~ 96 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASE--ENIEVARLHALESGLK 96 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCH--HHHHHHHHHHHHcCCc
Confidence 45666555456788999999999999999999888999999997 4999999998877664
No 78
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.43 E-value=1.1e-06 Score=68.56 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=51.4
Q ss_pred HHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 59 ~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+.+........+.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++..++...++..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~~~~~v~i 89 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSPLASKLEV 89 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcCCCCcEEE
Confidence 33444444445678999999999999999998888999999998 599999999988775555443
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.43 E-value=1.4e-06 Score=65.06 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=52.9
Q ss_pred eechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 51 ~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.++.+..+.+.+..... ..+.+|||+|||+|..++.+++. ..+++++|.++ .+++.++.|+..+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~ 137 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLD 137 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 45566666666654322 24468999999999999999886 34899999997 5999999999999886
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.41 E-value=1.3e-06 Score=68.70 Aligned_cols=63 Identities=19% Similarity=0.049 Sum_probs=51.9
Q ss_pred HHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 57 ~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.|+..+......-.+.+|||.|||||.+.+.++..+.+|+++|.++ +|++.++.|++.+++.+
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~~ 231 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIED 231 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCCC
Confidence 4555554433344677999999999999999888899999999998 59999999999998875
No 81
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.40 E-value=1.9e-06 Score=70.78 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCeEEEecccCChHHHHHhhcC------CEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~------~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+++.|+++|||+|+++.++++++ .+|++++.++. ++..+++.++.|++.++|+..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~vi 246 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVTVI 246 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEEEE
Confidence 57899999999999999988875 38999999984 777777888999999998865
No 82
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.40 E-value=1.4e-06 Score=66.45 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=46.3
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
+++.+.......++.+|||+|||+|.+++.+++.+.+|+++|.++ .+++.+++++..
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~ 73 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIA 73 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhcc
Confidence 344444444445678999999999999999999988999999998 499999988754
No 83
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=9.6e-07 Score=72.96 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=75.2
Q ss_pred CCCCCceeEEEEecCCCCCCceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC
Q 033085 14 TDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS 93 (128)
Q Consensus 14 ~~~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~ 93 (128)
.|-+....+.+.+.... +++++|-......+.. .++.+|..++..+...-.++.++|+-||||..|+.+++...
T Consensus 333 ~~~~l~~~~~~I~E~l~---~ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~ 406 (534)
T KOG2187|consen 333 KPLQLVGGDPYITESLL---GLTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK 406 (534)
T ss_pred CCeEEEccccEEEeecC---CeEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc
Confidence 33333334444444332 4566666554333332 46888999998877766789999999999999999999989
Q ss_pred EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 94 ~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
+|+++++++ +.++-|+.|++.|++++
T Consensus 407 ~ViGvEi~~--~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 407 RVIGVEISP--DAVEDAEKNAQINGISN 432 (534)
T ss_pred ceeeeecCh--hhcchhhhcchhcCccc
Confidence 999999998 59999999999999973
No 84
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.39 E-value=1.4e-06 Score=65.31 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=43.3
Q ss_pred CCCeEEEecccCChHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~----~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
.+.+|||+|||+|..++.+++. +.+|+++|.++ +|++.+++++...+...++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~ 109 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVE 109 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeE
Confidence 5678999999999999988774 45899999997 59999999988765544443
No 85
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.38 E-value=1e-06 Score=65.30 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCCeEEEecccCChHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~--~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
++.+|+|+-||.|..++.+|+ .++.|++.|.+| .+++.+++|+++|++.+++.+.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~~~i~~~ 157 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVENRIEVI 157 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-TTTEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCCCeEEEE
Confidence 678999999999999999999 566899999998 5999999999999999888654
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=1.7e-06 Score=67.24 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+.+|||+|||+|..++.+++... ++++.|.. ++++.+++|+...++.+++.++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~---~~~~~a~~~~~~~gl~~rv~~~ 204 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP---GAIDLVNENAAEKGVADRMRGI 204 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecH---HHHHHHHHHHHhCCccceEEEE
Confidence 557999999999999999988753 79999973 5999999999999998887654
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.35 E-value=1.6e-06 Score=63.37 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=44.7
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
...++||+|||+|..++.+++.. .+|+++|.+. ++++.+++++..+++. ++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~-ni~~ 70 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLK-NLHV 70 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCC-CEEE
Confidence 34589999999999999888864 3899999998 5999999999998886 4544
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.35 E-value=3e-06 Score=62.06 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=45.6
Q ss_pred ccCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
...++.+++|+|||||-+++.++..+. +|+++|.++ ++++.+++|++..+++
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFGVD 84 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCC
Confidence 344788999999999999999997664 899999998 5999999999999954
No 89
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.35 E-value=2.4e-06 Score=64.57 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=41.1
Q ss_pred EeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 50 ~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.|.. .+.+.+. ..++.+|||+|||||.++..+++. + .+|+++|.++ +|++.++++++..+..
T Consensus 33 ~~wr~--~~~~~~~----~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~--~ML~~a~~k~~~~~~~ 98 (233)
T PF01209_consen 33 RRWRR--KLIKLLG----LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP--GMLEVARKKLKREGLQ 98 (233)
T ss_dssp ----S--HHHHHHT------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H--HHHHHHHHHHHHTT--
T ss_pred HHHHH--HHHhccC----CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH--HHHHHHHHHHHhhCCC
Confidence 56876 3344432 235779999999999999988875 3 3899999998 5999999999887765
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.33 E-value=2e-06 Score=64.78 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=38.2
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
...+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~~a~~~~ 84 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLAQARQKD 84 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhC
Confidence 457899999999999998888889999999998 5999888875
No 91
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.33 E-value=3.3e-06 Score=62.66 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.+|||+|||+|..+..+++. + .+|+++|.++ ++++.++.++..+++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~ 96 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLH 96 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCC
Confidence 5789999999999999988864 3 4899999997 5999999999877763
No 92
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.32 E-value=1.9e-06 Score=56.25 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=38.1
Q ss_pred EEEecccCChHHHHHhhcC-----CEEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 74 vLELG~GtGl~~l~~a~~~-----~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
|||+|||+|.....+++.. .+++++|+++ ++++.++++....+...++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~ 53 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRF 53 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEE
Confidence 7999999999999888764 6899999998 5999999999876664443
No 93
>PRK04266 fibrillarin; Provisional
Probab=98.31 E-value=3.7e-06 Score=63.30 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=48.5
Q ss_pred CceEeech------HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH
Q 033085 47 YGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 47 ~G~~~W~~------s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.++++|.. +.+|+.| ......++.+|||+|||+|..++.+++.. .+|++.|.++ +|++.+.++++.
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~~ 118 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAEE 118 (226)
T ss_pred cEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhh
Confidence 45566654 4555555 12234467899999999999999998864 3899999998 599888777654
No 94
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.31 E-value=3.7e-06 Score=66.41 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=48.1
Q ss_pred HHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 56 ~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..++.++. .....++.+|||+|||+|..++.+++... +|+++|.++ ++++.+++|++.+++.
T Consensus 67 ~l~a~ll~-~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 67 SLMALFME-WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIE 131 (322)
T ss_pred HHHHHHHH-hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 34444433 33344678999999999999998887542 699999997 5999999999998874
No 95
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.29 E-value=3.5e-06 Score=67.89 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=42.3
Q ss_pred HHhccccCCCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHH
Q 033085 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 62 i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
+........+.+|||+|||+|.+++.+++. +.+|+++|.++ ++++.+++++.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~--~~l~~A~~~~~ 211 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA--EQQKLAQERCA 211 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhc
Confidence 333333446789999999999999988875 67999999998 59999999874
No 96
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.28 E-value=5.6e-06 Score=60.98 Aligned_cols=50 Identities=28% Similarity=0.379 Sum_probs=44.3
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
..++.+|||+|||+|..+..+++.+.+++++|.++ .+++.++.++..+++
T Consensus 43 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 43 PLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPL 92 (224)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 34678999999999999999988888999999987 599999999988776
No 97
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.28 E-value=3.6e-06 Score=63.58 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.++.+|||+|||+|..+..+++. +.+|+++|.++ ++++.++++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~ 75 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRL 75 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhC
Confidence 35679999999999999988875 45899999998 5999988874
No 98
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.27 E-value=4.9e-06 Score=61.37 Aligned_cols=53 Identities=26% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCCeEEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
.+.+|||+|||+|..+..+++.+ .+++++|.++ .+++.+++++..+++..++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~ 106 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVE 106 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeE
Confidence 56799999999999999888765 5899999998 49999999987766654444
No 99
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.27 E-value=3.9e-06 Score=63.74 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
+|.+|||+|||||-+++.+++.. .+|+++|.++. |++.+++.+..-+...
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~--ML~~a~~k~~~~~~~~ 102 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES--MLEVAREKLKKKGVQN 102 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH--HHHHHHHHhhccCccc
Confidence 78899999999999999999875 48999999984 9999999988655443
No 100
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.26 E-value=3.7e-06 Score=62.14 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=44.4
Q ss_pred CeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++|||+|||+|..+..+++.. .+|+++|+++ ++++.++.++...++.+++.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~ 54 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRI 54 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEE
Confidence 479999999999999888763 5899999987 599999999999888776654
No 101
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.26 E-value=3.7e-06 Score=65.73 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=42.1
Q ss_pred CCeEEEeccc-CChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHh-CCCCceEee
Q 033085 71 GANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVNYR 126 (128)
Q Consensus 71 ~~~vLELG~G-tGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N-~l~~~v~~~ 126 (128)
..++||+|+| +++..|+.++. +.++++||+++ ..++.|+.|++.| +|+.+|..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-TTTEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhccccccceEEE
Confidence 4589999999 77888887775 56999999998 5999999999999 999999875
No 102
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.4e-06 Score=68.36 Aligned_cols=68 Identities=22% Similarity=0.176 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
+..|.++.........+.++|||=||.|..|+.+|+...+|+++++.+ ++++.|++|++.|++.+ +.+
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~i~N-~~f 345 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANGIDN-VEF 345 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcCCCc-EEE
Confidence 455555555555555678999999999999999999999999999998 59999999999999986 544
No 103
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.25 E-value=3.7e-06 Score=62.20 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=37.3
Q ss_pred CCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++.+|||+|||+|.....+++. +.+++++|+++ ++++.++++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~ 87 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYL 87 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhC
Confidence 5678999999999999988876 46999999998 5999998864
No 104
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.25 E-value=7.4e-06 Score=64.57 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.3
Q ss_pred ccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHH
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
...++++|||+|||+|..++.++..|+ .|+++|.++. ++..++
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~--~l~q~~ 162 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQL--FLCQFE 162 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence 346789999999999999999998887 6999998873 665443
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.8e-06 Score=61.24 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=57.8
Q ss_pred ceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 48 G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
|.-.|-++..+...|.+....-++.+|||+|||||..+-.+++...+|+.++..+ ++.+.|++|.+..++.+
T Consensus 50 ~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~--~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 50 GCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE--ELAEQARRNLETLGYEN 121 (209)
T ss_pred CCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH--HHHHHHHHHHHHcCCCc
Confidence 3444555554444454544555788999999999999999999988999999997 59999999999999965
No 106
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.23 E-value=9.5e-06 Score=63.89 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=36.0
Q ss_pred ccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHH
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
...++++|||+|||+|.....+++.|+ .|+++|.++. |+..++
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~--ml~q~~ 161 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVL--FLCQFE 161 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence 456789999999999999998888887 6999999874 776543
No 107
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.23 E-value=3.5e-06 Score=67.14 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
....|.+++.......++ .+|||=||+|..|+.+|+...+|++++..+ ++++.|++|++.|++..
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCCc
Confidence 455555555544333334 799999999999999999999999999997 59999999999999963
No 108
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.22 E-value=1.5e-06 Score=54.84 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=36.1
Q ss_pred EEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 75 LELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
||+|||+|..+..+++. +.+|+++|.++ ++++.++++...++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~ 44 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGV 44 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCc
Confidence 79999999999999999 77999999998 599999998776554
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.22 E-value=4.3e-06 Score=61.42 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=56.4
Q ss_pred chHHHHHHHHHhcccc---CCCC-eEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 53 PCSVILAEYVWQQRYR---FSGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 53 ~~s~~l~~~i~~~~~~---~~~~-~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++-..+.+|+..+... -+.. +|||||||.|.+-.-+++.+. +.+++|+++ .++++|+..++++++++.|++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~n~I~f 122 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFSNEIRF 122 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCCcceeE
Confidence 3456677777654331 1222 899999999999999999876 589999998 499999988999999987765
No 110
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.21 E-value=6.4e-06 Score=62.52 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 60 ~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
+.+.......++.+|||+|||+|.++..+++.+.+|+++|.++ ++++.++.+..
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~ 72 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLS 72 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhC
Confidence 3333333344678999999999999999999988999999998 49999888764
No 111
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.21 E-value=5.6e-06 Score=63.13 Aligned_cols=49 Identities=27% Similarity=0.406 Sum_probs=41.7
Q ss_pred CCCeEEEecccCChHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.+|||+|||+|..++.+++. +. +|+++|.++ ++++.+++|...+++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~~ 128 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGYT 128 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCCC
Confidence 6789999999999998877664 43 799999997 5999999999887764
No 112
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.19 E-value=7.8e-06 Score=60.75 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=53.7
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+..-.+|+.......+-++|||+||++|..++.+++. +.+|+.+|.++ +..+.+++|++..++.++|...
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGGGGEEEE
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCCCcEEEE
Confidence 3333444433222335679999999999999998864 45999999997 5999999999999999888764
No 113
>PLN02476 O-methyltransferase
Probab=98.17 E-value=1e-05 Score=62.74 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=47.9
Q ss_pred CCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+.++|||+|+++|..++.+++. +.+|+.+|.++ +..+.+++|++.+|+.++|...
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEE
Confidence 5689999999999999988873 33799999998 5999999999999999887653
No 114
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.16 E-value=6.3e-06 Score=60.16 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=45.1
Q ss_pred CCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
+.+.++|||=||||.+|+-++..|+ +|+++|.++ ++++.+++|++.-++.+++..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v 96 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRV 96 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceee
Confidence 6899999999999999999999998 899999998 599999999999888775543
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.16 E-value=1e-05 Score=65.87 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
|...+.++. ..++.+|||+|||+|..++.+++.. .+|++.|.++ .+++.+++|++.+++...+
T Consensus 233 s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~~~~~ 297 (427)
T PRK10901 233 AQLAATLLA----PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGLKATV 297 (427)
T ss_pred HHHHHHHcC----CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEE
Confidence 444444553 2367899999999999999888764 4899999998 4999999999999886433
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.15 E-value=1.1e-05 Score=66.25 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~ 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAI 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhh
Confidence 5679999999999999988874 67999999997 59999998875
No 117
>PRK06202 hypothetical protein; Provisional
Probab=98.15 E-value=3.2e-06 Score=63.09 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCCeEEEecccCChHHHHHhh----cC--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~----~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
++.+|||+|||+|.++..+++ .| .+|+++|.++ +|++.++.+...+++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~ 114 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVT 114 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCe
Confidence 456999999999999887764 23 3899999998 5999999887655543
No 118
>PRK05785 hypothetical protein; Provisional
Probab=98.14 E-value=4.5e-06 Score=62.59 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+.+|||+|||||.++..+++. +.+|+++|.++ +|++.++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHHhc
Confidence 568999999999999998887 57999999998 599988764
No 119
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.13 E-value=1.2e-05 Score=65.72 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++..++.++.. .++.+|||+|||+|..++.+++. ..+|+++|.++ ++++.+++|++.+++.+ +.+
T Consensus 238 ~s~lv~~~l~~----~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~--~~l~~~~~n~~~~g~~~-v~~ 305 (444)
T PRK14902 238 SSMLVAPALDP----KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE--HKLKLIEENAKRLGLTN-IET 305 (444)
T ss_pred HHHHHHHHhCC----CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCe-EEE
Confidence 45555555532 25679999999999999988875 24899999998 59999999999999864 443
No 120
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.13 E-value=1.8e-05 Score=60.53 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=37.2
Q ss_pred CCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+.+|||+|||||..+..+++. + .+|+++|.++ +|++.++++..
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~~ 119 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQE 119 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhh
Confidence 5779999999999999988765 4 3899999998 59999987653
No 121
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.13 E-value=7.6e-06 Score=61.96 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=36.1
Q ss_pred CCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~ 112 (128)
..+.+|||+|||+|.++..+++. +.+|+++|.++ .|++.+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~ 71 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARE 71 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHh
Confidence 35679999999999999988887 56899999997 49988865
No 122
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.13 E-value=6.1e-06 Score=66.55 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=43.4
Q ss_pred CCeEEEecccCChHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
+.+|||++||+|..++.+++. +. +|++.|.++ ++++.+++|++.|++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~~ 108 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLEN 108 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCc
Confidence 458999999999999998875 43 899999998 59999999999999874
No 123
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.12 E-value=5.3e-06 Score=67.90 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=48.3
Q ss_pred eEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEeec
Q 033085 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYRN 127 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~~ 127 (128)
-|||+|+|||++++++++.|+ .|++.+.-. .|.+.|++.+..|+++++|+.-+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCccceeeec
Confidence 699999999999999999998 799999876 39999999999999999998753
No 124
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=1e-05 Score=55.64 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=43.2
Q ss_pred eEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+||+|||+|..++.+++.+. +|++.|.++ ++.+.+++|++.|++.. +.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~--~~~~~l~~~~~~n~~~~-v~~ 52 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP--DAYEILEENVKLNNLPN-VVL 52 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH--HHHHHHHHHHHHcCCCc-EEE
Confidence 489999999999999998876 699999997 59999999999998863 443
No 125
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.11 E-value=1.1e-05 Score=55.91 Aligned_cols=40 Identities=30% Similarity=0.293 Sum_probs=34.8
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~ 109 (128)
..++++|||+|||+|.....+++.+.+++++|.++. +++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~--~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ--MIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH--HHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH--HHhh
Confidence 346789999999999999999999999999999973 6654
No 126
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.11 E-value=1.3e-05 Score=61.43 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=42.5
Q ss_pred HHHHHhccccCCCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHH
Q 033085 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 59 ~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
+..+.......++.+|||+|||+|..+..+++. +.+|+++|.++ ++++.++.+...
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~~~~a~~~~~~ 97 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KMVNIAKLRNSD 97 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HHHHHHHHHcCc
Confidence 333433334446789999999999999888764 66999999997 599998887643
No 127
>PRK08317 hypothetical protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=57.60 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHH
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n 113 (128)
+-+.+........+.+|||+|||+|..+..+++.. .+|+++|.++ .+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~~~~a~~~ 63 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AMLALAKER 63 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHH
Confidence 33344444444567899999999999999888753 4899999998 488888887
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.10 E-value=1.2e-05 Score=62.73 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
.+.+|||||||||.....+++. +.+|+++|+++ +|++.+++++....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~~~ 112 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAADY 112 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHhhC
Confidence 4578999999999999988776 46899999998 59999999876543
No 129
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.04 E-value=2.4e-05 Score=63.32 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+..+||+|||+|...+.+|+.. ..++++|... .+++.+.+++..+++.+ +..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~--~~i~~a~~ka~~~gL~N-V~~ 176 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT--PSIEQVLKQIELLNLKN-LLI 176 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCH--HHHHHHHHHHHHcCCCc-EEE
Confidence 34689999999999999999875 4799999997 59999999999999864 443
No 130
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.02 E-value=2.7e-05 Score=59.47 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHhccccCCCCeEEEecccCChHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 62 i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
|........|.+|||-|+|+|.+++.+++. +. +|+-.|..+ +..+.|++|++.+++.++|...
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~~gl~~~v~~~ 97 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFERHGLDDNVTVH 97 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHHTTCCTTEEEE
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHHcCCCCCceeE
Confidence 333345568999999999999999999974 33 899999997 5999999999999999877653
No 131
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.02 E-value=3.7e-05 Score=61.90 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCeEEEecccCChHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.+|||+-||||+.|+.+++. |+ +|++.|.++ ++++.+++|++.|++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVE 95 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 358999999999999999886 54 899999998 5999999999999986
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.02 E-value=3.2e-05 Score=59.19 Aligned_cols=65 Identities=9% Similarity=-0.086 Sum_probs=50.2
Q ss_pred eechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 51 ~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
...++.+.+..+.. ..+.+|||+|||+|..++.+++.. ..|++.|.++ .+++.+++|++.+++..
T Consensus 56 qd~~s~~~~~~l~~----~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~~l~~~~~n~~~~g~~~ 123 (264)
T TIGR00446 56 QEASSMIPPLALEP----DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK--SRTKVLIANINRCGVLN 123 (264)
T ss_pred ECHHHHHHHHHhCC----CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCCc
Confidence 44455555444422 257799999999999999887642 3899999998 59999999999999853
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.01 E-value=5.3e-05 Score=58.07 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=44.0
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
+.++|||+|||+|.++..+++.. .+|+++|+++ ++++.++++...++...++++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp--~vi~~A~~~f~~~~~~~rv~v 121 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP--QVIAVARNHFELPENGERFEV 121 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHcCCCCCCCceEE
Confidence 45689999999999999887753 4899999998 599999999877665555544
No 134
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=2.1e-05 Score=57.66 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhccccCC---CCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 54 CSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~---~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+..|.+.+.......+ -+.++|+|||+|.++-++++. + ....+||+++ ++++...+.++.|+..
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVH 94 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCc
Confidence 56667776665332222 457999999999999999875 2 3689999998 5999999999999987
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.01 E-value=4.9e-05 Score=62.23 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred eEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 49 ~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+.+++.+..++..+.. ...+.+|||+|||+|..++.+++. +.+|+++|.++ ++++.+++|++.+++.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~ 301 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGIT 301 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 4677655555444432 235789999999999999877763 34899999998 5999999999999885
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.00 E-value=3.4e-05 Score=62.83 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=52.5
Q ss_pred chHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 53 ~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
.++..++.++.. .++.+|||+|||+|..++.+++. + .+|++.|.++ ++++.+++|++.+++..++
T Consensus 225 ~~s~~~~~~L~~----~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~~~~v 291 (426)
T TIGR00563 225 ASAQWVATWLAP----QNEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGLTIKA 291 (426)
T ss_pred HHHHHHHHHhCC----CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCCCeEE
Confidence 456666666643 25779999999999999988875 3 5899999998 5999999999999987443
No 137
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.99 E-value=2e-05 Score=58.75 Aligned_cols=54 Identities=20% Similarity=0.055 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHH
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~ 110 (128)
....|.+|+.... .-.+.+||++|||.|--++.+|..|.+|+++|+++. +++.+
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~--Ai~~~ 72 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI--AVEQF 72 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH--HHHHH
Confidence 4567777776531 125569999999999999999999999999999984 88865
No 138
>PRK06922 hypothetical protein; Provisional
Probab=97.99 E-value=2.6e-05 Score=66.62 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=40.7
Q ss_pred CCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
.++.+|||+|||+|..+..+++. +.+|+++|+++ .|++.++.+...++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~g~ 467 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNEGR 467 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCC
Confidence 46789999999999998877764 34999999998 499999998766554
No 139
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.6e-05 Score=58.82 Aligned_cols=58 Identities=26% Similarity=0.237 Sum_probs=49.6
Q ss_pred cccCCCCeEEEecccCChHHHHHhh-cCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 66 RYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~a~-~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.....|.+|||.|.|+|.++..++. .|. +|+..|..+ +..+.|++|++.-++.++|..
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHHhccccceEE
Confidence 3456889999999999999999996 343 899999997 599999999999888886654
No 140
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.98 E-value=3.3e-05 Score=57.55 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-CC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
++..+...+.+....-+|.+|||+|||||..+-+++.+ +. .|+.+|..+ ++++.+++|+...++.
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGID 123 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccC
Confidence 33333333444444557889999999999999999886 43 699999987 5999999999998886
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.98 E-value=3.4e-05 Score=62.95 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
++..++.++. ...+.+|||+|||+|..++.+++. + .+|++.|.++ .+++.+++|++.+++..
T Consensus 240 ~s~l~~~~l~----~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~~ 304 (434)
T PRK14901 240 SAQLVAPLLD----PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLKS 304 (434)
T ss_pred HHHHHHHHhC----CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCCe
Confidence 4555555443 235789999999999999988875 2 3899999997 59999999999999864
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=97.95 E-value=1.7e-05 Score=60.35 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=45.2
Q ss_pred CceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-----CCEEEEEecCChHHHHHHHHHHHH
Q 033085 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 47 ~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-----~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.|...-|.+ +++++... ...+.+|||+|||+|.+++.+++. ..+|+++|+++ .+++.+++|+.
T Consensus 30 ~GqFfTP~~--iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~ 97 (241)
T PHA03412 30 LGAFFTPIG--LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVP 97 (241)
T ss_pred CCccCCCHH--HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhcc
Confidence 455555555 44444322 123669999999999999988764 24899999998 49999998863
No 143
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.89 E-value=3.1e-05 Score=57.96 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHH
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~ 111 (128)
...|.+|+.... ..++.+||++|||.|.-++.+|..|.+|+++|+++ .+++.+.
T Consensus 23 ~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~ 76 (218)
T PRK13255 23 NPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFF 76 (218)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHH
Confidence 455666665321 12467999999999999999999999999999998 4777653
No 144
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.88 E-value=5.2e-05 Score=55.70 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=36.8
Q ss_pred CCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+.++|||+|||+|..+..+++.+. +++++|.++ ++++.++.+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~ 79 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS 79 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC
Confidence 3557899999999999999988764 689999987 48887776543
No 145
>PHA03411 putative methyltransferase; Provisional
Probab=97.88 E-value=2.7e-05 Score=60.35 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=45.7
Q ss_pred CceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHH
Q 033085 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 47 ~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.|...-|.+++ ..|+... ....+|||+|||+|.+++.+++. +.+|+++|+++ ++++.+++|.
T Consensus 45 ~G~FfTP~~i~-~~f~~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp--~al~~Ar~n~ 108 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTIDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP--EFARIGKRLL 108 (279)
T ss_pred ceeEcCCHHHH-HHHHhcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhC
Confidence 46666666664 3454322 13458999999999999988775 35999999998 5999998874
No 146
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.87 E-value=6.3e-05 Score=61.67 Aligned_cols=40 Identities=33% Similarity=0.290 Sum_probs=34.9
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~ 111 (128)
.+.+|||+|||+|..+..+++.+.+|+++|.++ ++++.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~ 76 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNE 76 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHH
Confidence 567999999999999999999888999999998 4876544
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.86 E-value=8.3e-05 Score=60.81 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
.+.+|||+|||+|-.++.++.. +.+|+++|.++ .+++.+++|++..++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~~~ 289 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKLSS 289 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCe
Confidence 5779999999999999988765 34899999998 59999999999998863
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.79 E-value=1.5e-05 Score=60.55 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
-+++||||||||+.|..+-....+.+++|++.+ |++.+...
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~n--Ml~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISEN--MLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHH--HHHHHHhc
Confidence 358999999999999998888889999999984 88776543
No 149
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.78 E-value=6.1e-05 Score=59.96 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=50.6
Q ss_pred CCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.|.+|+|+=||.|-.++.+|+.|+ +|++.|+|| .+++.+++|+++|++..++.+.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVEGRVEPI 243 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCccceeeEE
Confidence 588999999999999999999998 499999998 5999999999999999887653
No 150
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.77 E-value=5.3e-05 Score=60.33 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=38.5
Q ss_pred CCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
.+.+|||+|||+|..++.+++. +.+|+++|.++ +|++.++++...++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~ 161 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKE 161 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccC
Confidence 4679999999999999888764 35899999997 59999998865443
No 151
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.77 E-value=0.00036 Score=54.39 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=59.4
Q ss_pred ceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 033085 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 34 ~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
++.+.+.-.....+|+.+ .-...=.++... .++++||+|=|=||-.|+.+++.|+ +|+.+|.+. .+++.+++
T Consensus 92 gl~f~v~l~~gqktGlFl--DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~ 164 (286)
T PF10672_consen 92 GLKFRVDLTDGQKTGLFL--DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKE 164 (286)
T ss_dssp TEEEEEESSSSSSTSS-G--GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHH
T ss_pred CEEEEEEcCCCCcceEcH--HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHH
Confidence 444444444445677743 222222344332 3689999999999999999999998 799999998 49999999
Q ss_pred HHHHhCCC-CceEe
Q 033085 113 VCEMNKLN-CRVNY 125 (128)
Q Consensus 113 n~~~N~l~-~~v~~ 125 (128)
|+++|+++ +++..
T Consensus 165 N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 165 NAALNGLDLDRHRF 178 (286)
T ss_dssp HHHHTT-CCTCEEE
T ss_pred HHHHcCCCccceEE
Confidence 99999997 55554
No 152
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.74 E-value=0.0002 Score=52.17 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=37.7
Q ss_pred CCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++.+|||+|||+|..+..+++... +++++|.++ .+++.++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc
Confidence 678999999999999998887654 899999987 48888888765
No 153
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.73 E-value=3.2e-06 Score=54.80 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=34.0
Q ss_pred EEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 75 LELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
||+|||+|.+...+... ..+++++|.++. |++.+++........
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~ 46 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGND 46 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCc
Confidence 79999999999988877 458999999995 988777777766543
No 154
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.70 E-value=0.00017 Score=55.04 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+-++|||+|+++|..++.+++. +.+|+.+|.++ +..+.|+.|++..++.++|...
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCceEEE
Confidence 4569999999999999988764 34899999997 5999999999999999888764
No 155
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.69 E-value=0.00014 Score=52.34 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=44.9
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
+.|||+.||.|--.+.+|+.+.+|+++|+++ +-++.++.|++.=|+.++|..+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~~~I~~i 53 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVADNIDFI 53 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-GGGEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEE
Confidence 3699999999999999999999999999998 5999999999999998888764
No 156
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.67 E-value=0.00025 Score=49.34 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCCCeEEEecccCChHHHHHhh------cCCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 69 FSGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~------~~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
.+...|+|+|||.|.++.+++. .+.+|+++|.++ ..++.+....+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 4567999999999999999888 345999999998 48888888776655
No 157
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00025 Score=52.08 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=48.6
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
.+.|.++|||=||||.+|+-++..|+ +++++|.+. +++..+++|++.-++..++.
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~ 96 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEAR 96 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceE
Confidence 46899999999999999999999998 899999998 59999999998888655443
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00027 Score=53.15 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=46.7
Q ss_pred CCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
..++|||+|+++|..++.+|.. . .+++.+|.++ +..+.|++|.+.-++.++|..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHHcCCcceEEE
Confidence 6789999999999999987763 3 3799999997 699999999999999987643
No 159
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.65 E-value=0.00015 Score=54.79 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=37.0
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
+..-|||+|||||+.|-.+...|...+++|+++. |++.+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps--ML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS--MLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHH--HHHHHHH
Confidence 4568999999999999999999999999999984 9998885
No 160
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.63 E-value=0.00056 Score=55.48 Aligned_cols=54 Identities=31% Similarity=0.234 Sum_probs=48.9
Q ss_pred CCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCC-CceE
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVN 124 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~-~~v~ 124 (128)
.+|++||+|=|=||-.|+.+|..|+ +|+.+|.+. ..++.+++|+++|++. .++.
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~ 271 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHR 271 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCcccee
Confidence 3699999999999999999999999 899999998 4999999999999996 3443
No 161
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.63 E-value=5.6e-05 Score=55.98 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=42.5
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..+-|||+|+|++++++++...+|++++.+|. ..+++.+|++.|+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk--~a~~a~eN~~v~g~~ 80 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK--RARLAEENLHVPGDV 80 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH--HHHHhhhcCCCCCCc
Confidence 57899999999999999999779999999984 889999999888875
No 162
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.61 E-value=0.00017 Score=52.15 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHHHhhcC---CEEEEEecCC
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~ 102 (128)
+.++........++.+|||+|||+|.++..+++.. .+|+++|.++
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 33333333444578899999999999998887653 2799999987
No 163
>PLN03075 nicotianamine synthase; Provisional
Probab=97.59 E-value=0.00032 Score=54.89 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCCeEEEeccc-CChHHHHHhh-c--CCEEEEEecCChHHHHHHHHHHHHH-hCCCCceEee
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVNYR 126 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~--~~~v~~tD~~~~~~~l~~~~~n~~~-N~l~~~v~~~ 126 (128)
..++|+|+||| .|+.++.+++ . +.+++.+|.++ ++++.|++++.. .++.+++++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~ 182 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFH 182 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEE
Confidence 66799999999 5566665553 3 33799999998 599999999965 7887777653
No 164
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.57 E-value=0.00045 Score=54.32 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=34.7
Q ss_pred hccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCCh
Q 033085 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (128)
Q Consensus 64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~ 103 (128)
.+...++|++|||+|||.|.-+..++..|+ .|+++|-++.
T Consensus 109 p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l 149 (315)
T PF08003_consen 109 PHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL 149 (315)
T ss_pred hhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence 333467999999999999999999999998 6999998763
No 165
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.56 E-value=0.00033 Score=53.66 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCCeEEEecccCChHHHHHhhcC-----CEEEEEecCChHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~-----~~v~~tD~~~~~~~l~~~~~n 113 (128)
...+|||+|||+|..+..+++.. .+|+++|.++ ++++.++++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~ 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKR 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHh
Confidence 34689999999999988777542 3789999997 599888765
No 166
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.52 E-value=0.00027 Score=52.37 Aligned_cols=34 Identities=26% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCCCeEEEecccCChHHHHHhhcC---CEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~ 102 (128)
.++.+|||||||||..+..+++.. .+|+++|+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 357799999999999999887753 3899999985
No 167
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.50 E-value=0.00038 Score=53.61 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=52.1
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc--------CCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~--------~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
...+++|.. .........++.++||++||||-++..+.+. ..+|++.|+++ +|++..++..+.-
T Consensus 82 lGiHRlWKd------~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp--~mL~vgkqRa~~~ 153 (296)
T KOG1540|consen 82 LGIHRLWKD------MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP--HMLAVGKQRAKKR 153 (296)
T ss_pred cchhHHHHH------HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH--HHHHHHHHHHhhc
Confidence 355568853 2223334557789999999999999977653 24799999998 5999999999887
Q ss_pred CCCCc
Q 033085 118 KLNCR 122 (128)
Q Consensus 118 ~l~~~ 122 (128)
++.+.
T Consensus 154 ~l~~~ 158 (296)
T KOG1540|consen 154 PLKAS 158 (296)
T ss_pred CCCcC
Confidence 77654
No 168
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.50 E-value=0.00021 Score=51.96 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=32.8
Q ss_pred CCCeEEEecccCChHHHHHhhc-CCEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~ 112 (128)
.+.+|||+|||+|.....+++. +.+++++|.++ ++++.++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~~ 54 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACVA 54 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHHH
Confidence 4568999999999999888754 45789999987 48777654
No 169
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00063 Score=52.35 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=45.1
Q ss_pred HHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 59 ~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+.|.......++.+|||+|+|.|.+...+++.+++|+++++++ .+++.+++...
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~ 73 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFA 73 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhcc
Confidence 44555444455578999999999999999999999999999998 48888887764
No 170
>PTZ00146 fibrillarin; Provisional
Probab=97.48 E-value=0.00056 Score=53.48 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=44.1
Q ss_pred ceEeech--HHHHHHHHHh--ccccCCCCeEEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHH
Q 033085 48 GLFVWPC--SVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 48 G~~~W~~--s~~l~~~i~~--~~~~~~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n 113 (128)
-+++|+. |.+-|..+.. .....++.+|||||||+|..+..++... -+|+++|.++ ++++.+...
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~dLl~~ 176 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGRDLTNM 176 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHH
Confidence 4899987 3333333332 1224467899999999999999988863 2799999996 455444443
No 171
>PHA01634 hypothetical protein
Probab=97.47 E-value=0.00035 Score=48.70 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
.+++++|+|+|++.|-.+|..+-.|+ +|++.+.++. +.+.++.|++.|.+=|+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k--l~k~~een~k~nnI~DK~ 80 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK--LRKKWEEVCAYFNICDKA 80 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH--HHHHHHHHhhhheeeece
Confidence 45899999999999999999999998 7999999874 999999999999876554
No 172
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00013 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=34.4
Q ss_pred eEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
.++|+|||+|..++.++....+|++||.+. +||+.+++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~--~mL~~a~k 73 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSE--AMLKVAKK 73 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCH--HHHHHhhc
Confidence 899999999999999999988999999998 48887765
No 173
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.46 E-value=0.00028 Score=54.14 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=33.7
Q ss_pred CCCeEEEecccCCh----HHHHHhhc-------CCEEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl----~~l~~a~~-------~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.+.+||++|||||- +++.+++. +.+|++||+++ +|++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HHHHHHHcCC
Confidence 34699999999996 55555543 34899999998 5999998864
No 174
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.42 E-value=0.00044 Score=42.95 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=33.9
Q ss_pred eEEEecccCChHHHHHhh-cCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
+++|+|||+|..+..+++ ...+++++|.++ +++..++++...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~ 44 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAAL 44 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcc
Confidence 489999999999998887 445899999997 4777777544433
No 175
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.38 E-value=0.00086 Score=49.86 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=45.0
Q ss_pred EEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 74 vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
|.|+||-=|.+++.+.+.|. +|+++|+++. .++.|+.|++.+++.+++..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~g--pL~~A~~~i~~~~l~~~i~~r 53 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPG--PLEKAKENIAKYGLEDRIEVR 53 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHHTT-TTTEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCcccEEEE
Confidence 68999999999999999987 7999999985 999999999999999988764
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.35 E-value=0.00075 Score=50.95 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=48.2
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
.+|++.=.....|.+|+..... -++.+||..|||.|.=.+.++..|.+|+++|+++. .++.+.+
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~--Ai~~~~~ 83 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK--AVLSFFS 83 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH--HHHHHHH
Confidence 3455444456667777654322 25679999999999999999999999999999984 7776644
No 177
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00062 Score=51.39 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCCeEEEecccCChHHHHHhhc--CCEEEEEecCChHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n 113 (128)
.-.+|.|||||+|...-++++. ++.++++|-++ +|++.++.-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~--~Mla~Aa~r 73 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP--AMLAKAAQR 73 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH--HHHHHHHHh
Confidence 4458999999999999999886 45899999987 599888653
No 178
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.28 E-value=0.00095 Score=51.00 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
...+++.|.......++..|||+|+|+|.++-.+++.+.+|++++.++ .+++.++....
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~ 73 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhh
Confidence 344555555544444788999999999999999999999999999998 48888887554
No 179
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.27 E-value=0.00081 Score=49.61 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=27.8
Q ss_pred CCCeEEEecccCChHHHHHhh-cCCEEEEEecCCh
Q 033085 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-~~~~v~~tD~~~~ 103 (128)
.+.+|||||||.|-+--.+.. ++.+..++|+++.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~ 47 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD 47 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH
Confidence 467999999999988776665 5668999999873
No 180
>PRK00811 spermidine synthase; Provisional
Probab=97.24 E-value=0.0013 Score=50.95 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCCeEEEecccCChHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
..++||++|||+|..+..+++. +. +|+++|+++ ++++.++++...
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~ 122 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPE 122 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHH
Confidence 4579999999999999988876 43 899999998 599999998753
No 181
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.24 E-value=0.00036 Score=51.73 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=34.8
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.++||+|||.|.++..++..+.+++++|.++ .+++.+++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~--~Al~~Ar~Rl~ 86 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISP--RALARARERLA 86 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-H--HHHHHHHHHTT
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCH--HHHHHHHHhcC
Confidence 4799999999999999999888999999998 49999988765
No 182
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.18 E-value=0.0024 Score=49.64 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
+.|.++-..+.++..-+. ....-....|||+|-|||.+...+...|++|++.+.++ .|+..+++-++---
T Consensus 35 d~GQHilkNp~v~~~I~~-ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp 104 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVE-KADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTP 104 (315)
T ss_pred ccchhhhcCHHHHHHHHh-ccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCC
Confidence 456666555555555443 33344667999999999999999999999999999998 49999888775443
No 183
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.14 E-value=0.001 Score=49.85 Aligned_cols=61 Identities=21% Similarity=0.098 Sum_probs=44.9
Q ss_pred CceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHH
Q 033085 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 47 ~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~ 110 (128)
++++.=.....|.+|+.. ...-.+.+||.-|||.|.-.+.++..|.+|+++|+++. +++.+
T Consensus 15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~--Ai~~~ 75 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT--AIEQA 75 (218)
T ss_dssp -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH--HHHHH
T ss_pred CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH--HHHHH
Confidence 343333446778888876 22335669999999999999999999999999999984 77666
No 184
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.13 E-value=0.0021 Score=46.78 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=50.6
Q ss_pred EeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHH
Q 033085 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 50 ~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n 113 (128)
.+=|+|-.+|+-|...-....|+.|||||.|||.+.-.+.+.|. .++++++++ +....+.+.
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~--dF~~~L~~~ 92 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP--DFVCHLNQL 92 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH--HHHHHHHHh
Confidence 35578888899888876677899999999999999998888875 689999987 477666543
No 185
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.12 E-value=0.00074 Score=51.74 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=41.6
Q ss_pred cccCCCCeEEEecccCChHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHH
Q 033085 66 RYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
...|..+.+||+||-+|.+++.+||. ++ .|+++|+++. +|+.|++|+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r 103 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIR 103 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhcc
Confidence 35678889999999999999999985 55 7999999985 9999999874
No 186
>PRK03612 spermidine synthase; Provisional
Probab=97.07 E-value=0.0011 Score=55.51 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=37.5
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+.++||++|||+|.....+++.. .+|+++|+++ ++++.+++|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~ 341 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSP 341 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCC
Confidence 46799999999999999888875 4899999998 5999999964
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.95 E-value=0.0039 Score=53.98 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcccc-CCCCeEEEecccCChHHHHHhhc------------------------------------------
Q 033085 55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV------------------------------------------ 91 (128)
Q Consensus 55 s~~l~~~i~~~~~~-~~~~~vLELG~GtGl~~l~~a~~------------------------------------------ 91 (128)
-..||.-|...... -.+..++|-.||+|-+.|-++..
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555554443333 24679999999999999977542
Q ss_pred --CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 92 --GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 92 --~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
..+++++|+++ ++++.++.|+..+++.+.+..
T Consensus 254 ~~~~~i~G~Did~--~av~~A~~N~~~~g~~~~i~~ 287 (702)
T PRK11783 254 ELPSKFYGSDIDP--RVIQAARKNARRAGVAELITF 287 (702)
T ss_pred ccCceEEEEECCH--HHHHHHHHHHHHcCCCcceEE
Confidence 12689999998 599999999999999876654
No 188
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=96.86 E-value=0.0012 Score=50.98 Aligned_cols=57 Identities=28% Similarity=0.323 Sum_probs=47.6
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCC
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~ 102 (128)
.+|..+|+++..|..++.+++..+.++++.++|||+++..+.+++...-|...+...
T Consensus 66 ~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~ 122 (262)
T KOG2497|consen 66 RTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLR 122 (262)
T ss_pred HhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccC
Confidence 689999999999999999998878899999999999999977777755444444443
No 189
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.86 E-value=0.0017 Score=53.22 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCceEEEEecCCC---CCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHH
Q 033085 32 KPSFSIAIIENMK---EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108 (128)
Q Consensus 32 ~~~~~~~i~~~~~---~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~ 108 (128)
++.+....+|... ...|-.-|.+ .+..+...-..-.-.|..|.|+=||.|-.++-+++.++.|++-|+++ ++++
T Consensus 209 e~n~vtevre~~~~Fk~DfskVYWns-RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik 285 (495)
T KOG2078|consen 209 ERNLVTEVREGGERFKFDFSKVYWNS-RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIK 285 (495)
T ss_pred CCceEEEEecCCeeEEEecceEEeec-cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHH
Confidence 3455566665532 1445555984 33333221111112477899999999999999999999999999998 6999
Q ss_pred HHHHHHHHhCCCCc-eEee
Q 033085 109 NMRRVCEMNKLNCR-VNYR 126 (128)
Q Consensus 109 ~~~~n~~~N~l~~~-v~~~ 126 (128)
.++.|+..|.+..+ |...
T Consensus 286 ~Lk~ni~lNkv~~~~iei~ 304 (495)
T KOG2078|consen 286 WLKANIKLNKVDPSAIEIF 304 (495)
T ss_pred HHHHhccccccchhheeee
Confidence 99999999999876 6554
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.81 E-value=0.0028 Score=45.91 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC--E---------EEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~--~---------v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
||..|......-++..+||-=||+|-+.+.++..+. . +++.|.++ ++++.++.|++..++...+...
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccCCceEEE
Confidence 444444333334677999999999999998776543 3 78999998 5999999999999988766543
No 191
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.79 E-value=0.004 Score=47.79 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
..++||++|||+|.++..+++.. .+|+++|+++ ++++.++++...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHh
Confidence 34599999999999888777764 3899999998 599999998743
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.78 E-value=0.012 Score=43.04 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=36.8
Q ss_pred eEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
+++|+|+|.|++|+.++-... +|++.|-... =+..++.-+..-+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL~~~~~~L~L~ 98 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFLKEVVRELGLS 98 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHHHHHHHHHT-S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHHHHHHHHhCCC
Confidence 799999999999998887654 8999999864 667777777777776
No 193
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.77 E-value=0.0047 Score=49.93 Aligned_cols=53 Identities=30% Similarity=0.369 Sum_probs=42.9
Q ss_pred CCeEEEecccCChHHHHHhhc--C-CEEEEEecCChHHHHHHHHHHHHHhCCCC-ceEe
Q 033085 71 GANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVNY 125 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~~-~v~~ 125 (128)
..++||.=||||+=|+-.++- + .+|++-|.++ ++++.+++|+++|++++ ++++
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~~~~~~~~v 106 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNGLEDERIEV 106 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT-SGCCEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhccccCceEEE
Confidence 458999999999999988876 3 3899999998 59999999999999998 5554
No 194
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.72 E-value=0.0055 Score=45.05 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=39.4
Q ss_pred CeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
..+||+|||.|-.-+.+|+... .++++|... ..+..+...+...++++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~--~~v~~a~~~~~~~~l~N 68 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRK--KRVAKALRKAEKRGLKN 68 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-H--HHHHHHHHHHHHHTTSS
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecch--HHHHHHHHHHHhhcccc
Confidence 3899999999999998888754 899999997 48899999998888863
No 195
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.70 E-value=0.0085 Score=44.79 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~ 112 (128)
..++|+|+|+|+|..++.+++... ++++.|+. ++++.++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKE 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHH
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhcccc
Confidence 456899999999999998888754 89999994 58888877
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.68 E-value=0.0074 Score=47.32 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=38.3
Q ss_pred CCCeEEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.+..+||.+||.|--+..+++.. .+|++.|.++ ++++.+++++..
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~--~al~~ak~~L~~ 66 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP--DAIAAAKDRLKP 66 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH--HHHHHHHHhhcc
Confidence 56699999999999999888764 4899999998 599999887644
No 197
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.63 E-value=0.0059 Score=47.32 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhh---------cCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~---------~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
..|...-| ..++++|........+.+|+|-.||+|-.-+.+.+ ...++++.|.++ .++..++.|+..
T Consensus 24 ~~G~~~TP--~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l 99 (311)
T PF02384_consen 24 KLGQFYTP--REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLL 99 (311)
T ss_dssp SCGGC-----HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHH
T ss_pred ccceeehH--HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhh
Confidence 44555444 34555665544445677899999999999887765 234899999997 599999999988
Q ss_pred hCCCCc
Q 033085 117 NKLNCR 122 (128)
Q Consensus 117 N~l~~~ 122 (128)
+++...
T Consensus 100 ~~~~~~ 105 (311)
T PF02384_consen 100 HGIDNS 105 (311)
T ss_dssp TTHHCB
T ss_pred hccccc
Confidence 876543
No 198
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0073 Score=46.01 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=48.5
Q ss_pred eEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCCh
Q 033085 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (128)
Q Consensus 49 ~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~ 103 (128)
..+-.+++-|...+....-.+++++|||+|+.||-..-.+.+.|+ +|+++|....
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~ 113 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG 113 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence 345568899999998877778999999999999999999999998 8999999875
No 199
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.54 E-value=0.0065 Score=48.29 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=43.2
Q ss_pred eechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 51 ~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
-|--+.++..|+........+.+|||||||-|-=-.-+.+.+. .++++|++. +.|+.|++-.
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry 105 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHH
Confidence 4777888888876433223678999999997766555565554 899999997 5888888776
No 200
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.49 E-value=0.015 Score=46.25 Aligned_cols=75 Identities=25% Similarity=0.335 Sum_probs=55.1
Q ss_pred ceEEEEecCCCCCCceEeechHHHHHHHHHhccccCCCCeEEEeccc-CChHHHHHhhc-CC-EEEEEecCChHHHHHHH
Q 033085 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 34 ~~~~~i~~~~~~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~G-tGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~ 110 (128)
.+..++.++...+.|..+=| +.++-........-.|.+||=+||| .|++.+++||. |+ +|+++|..+ +-++.|
T Consensus 135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~--~Rle~A 210 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA--NRLELA 210 (354)
T ss_pred HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH--HHHHHH
Confidence 56778877776666665544 3333333444445578899999999 99999999985 76 899999998 477777
Q ss_pred HH
Q 033085 111 RR 112 (128)
Q Consensus 111 ~~ 112 (128)
++
T Consensus 211 k~ 212 (354)
T KOG0024|consen 211 KK 212 (354)
T ss_pred HH
Confidence 76
No 201
>PRK01581 speE spermidine synthase; Validated
Probab=96.40 E-value=0.0062 Score=49.14 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=35.1
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~ 112 (128)
..++||++|||+|.....+.+.. .+|+++|+++ ++++.|+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp--eVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG--SMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH--HHHHHHHh
Confidence 45699999999999888787765 4899999998 59999996
No 202
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.38 E-value=0.0088 Score=47.92 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=32.1
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~ 102 (128)
...|+++|||||++|-.+-.+.+.|.+|+++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh
Confidence 35789999999999999999999999999999765
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.012 Score=44.26 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=37.0
Q ss_pred CCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.++++|+|+|.|++|+.+|-... +|++.|-... =+..++.-++.-+++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~ 117 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLE 117 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCC
Confidence 57999999999999998875443 7999998863 556666666666665
No 204
>PRK10742 putative methyltransferase; Provisional
Probab=96.27 E-value=0.018 Score=44.14 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=39.3
Q ss_pred eEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
+|||+-+|+|..++.++..|++|++++.++. +...+++|++.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHH
Confidence 8999999999999999999999999999984 88899999876
No 205
>PLN02366 spermidine synthase
Probab=96.24 E-value=0.012 Score=46.24 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
..++||++|||.|.+...+++.. .+|+++|+++ ++++.+++...
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~ 136 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFP 136 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhh
Confidence 46799999999999998888874 3899999997 59999999864
No 206
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.19 E-value=0.018 Score=43.50 Aligned_cols=47 Identities=17% Similarity=0.017 Sum_probs=41.2
Q ss_pred CeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..+||+|||.|-.-+..|+... .+++++... ..+..|...+...+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l~ 98 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGLK 98 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCCC
Confidence 4899999999999999999876 689999987 4889999999998884
No 207
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.10 E-value=0.021 Score=44.04 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
+..++||||||.|-+...++....+|++|+.++. |...+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~--Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP--MRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH--HHHHHHh
Confidence 5568999999999999999999899999999983 6555443
No 208
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.05 E-value=0.041 Score=41.48 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceEeec
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYRN 127 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~~ 127 (128)
++.++.|+||==|.+++.+.+.+. .+++.|.++. .++.+.+|+..|++.+++.++.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~~~i~vr~ 73 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLSERIDVRL 73 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCcceEEEec
Confidence 345699999999999999998765 7999999996 8999999999999999988764
No 209
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.04 E-value=0.016 Score=48.44 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=37.9
Q ss_pred CCCeEEEecccCChHHHHHhhcC----------CEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~----------~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
...+|||.+||+|...+.++... .++++.|+++ +++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~--~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK--TLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH--HHHHHHHHHHhhcC
Confidence 44689999999999998776521 3689999997 59999999987665
No 210
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.014 Score=43.88 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred CceEeechHHHHHHHHHhcc--ccCCCCeEEEecccCChHHHHHhhc-CC---EEEEEecCChHHHHHHHHHHHHHh
Q 033085 47 YGLFVWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 47 ~G~~~W~~s~~l~~~i~~~~--~~~~~~~vLELG~GtGl~~l~~a~~-~~---~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
.|+.+--++..+-.++.... ...+|.+.||+|+|||.++-.++.+ ++ .++++|.-+ ++++.+++|+..-
T Consensus 57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDKD 131 (237)
T ss_pred cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHhh
Confidence 34333335544444433322 2457899999999999999877753 33 457888776 6999999998643
No 211
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.049 Score=42.55 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=48.2
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.-.|.+|||-|+|+|-++.++++.-+ +++-.|+.. .-.+.+++-.+..++.+++++.
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~ 162 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVT 162 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEE
Confidence 44788999999999999999998753 799999976 4777888889999999888753
No 212
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.75 E-value=0.0085 Score=47.25 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=59.6
Q ss_pred Cce-EeechHHHHHHHH--Hhcc----ccCCCCeEEEecccCChHHH-HHhhcCC-EEEEEecCChHHHHHHHHHHHHHh
Q 033085 47 YGL-FVWPCSVILAEYV--WQQR----YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 47 ~G~-~~W~~s~~l~~~i--~~~~----~~~~~~~vLELG~GtGl~~l-~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
.|. ..|++...|-.+= .+.. ....+..|+||=+|.|...+ ++..+|+ .|++.|.+| ..++.+++|++.|
T Consensus 164 NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N 241 (351)
T KOG1227|consen 164 NGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEAN 241 (351)
T ss_pred cCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhc
Confidence 355 5899988877662 2211 13356789999999999999 8889998 799999998 4999999999999
Q ss_pred CCCCce
Q 033085 118 KLNCRV 123 (128)
Q Consensus 118 ~l~~~v 123 (128)
+..++.
T Consensus 242 ~V~~r~ 247 (351)
T KOG1227|consen 242 NVMDRC 247 (351)
T ss_pred chHHHH
Confidence 887643
No 213
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.56 E-value=0.012 Score=44.30 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=35.2
Q ss_pred eEEEecccCChHHHHHh-hcCCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a-~~~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
-+||+|||||----+.- +.+..|++.|-++. |.+.+.+.++.|.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~--mee~~~ks~~E~k 123 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEK--MEEIADKSAAEKK 123 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHH--HHHHHHHHHhhcc
Confidence 58999999997654443 34668999999874 9999999998883
No 214
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.51 E-value=0.0089 Score=45.74 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=35.9
Q ss_pred eEEEecccCChHHHHHhhcC----CEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~----~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
+|||+|||.|....-+.+-. -+|++.|.++ .+++..+.|...+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp--~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP--RAIELVKKSSGYDE 121 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCCh--HHHHHHHhccccch
Confidence 69999999999888666643 3799999998 49998888876655
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.46 E-value=0.053 Score=38.70 Aligned_cols=49 Identities=22% Similarity=0.121 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcccc-C-CCCeEEEecccCChHHHHHhhcC---CEEEEEecCC
Q 033085 54 CSVILAEYVWQQRYR-F-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~-~-~~~~vLELG~GtGl~~l~~a~~~---~~v~~tD~~~ 102 (128)
++.-|.+........ . .+.+||||||++|-.+-.+.+.+ .+|+++|+.+
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 556666666654412 2 45799999999999999999988 4899999997
No 216
>PLN02823 spermine synthase
Probab=95.45 E-value=0.049 Score=43.39 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHh
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
..++||.+|+|.|.....+.+.. .+|+++|+++ ++++.+++....+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~ 150 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVN 150 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccc
Confidence 45689999999999998777753 3899999998 5999999987654
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.31 E-value=0.073 Score=41.06 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=34.7
Q ss_pred ccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHH
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
..|+-++|||+|||+|.....+... + .++++.|.++ .|++.++..+.
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~--~~~~l~~~l~~ 79 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP--EMLELAKRLLR 79 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH--HHHHHHHHHHh
Confidence 3567789999999999766655442 2 2799999987 48887777543
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.11 Score=42.15 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC-----------------------------------------
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------- 93 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~----------------------------------------- 93 (128)
-..||.-|........+..++|-=||+|-+.|-+|..+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 345566555554555667899999999999998877653
Q ss_pred EEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 94 ~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+++.|+++ .+++-|+.|+..-|+.+.|...
T Consensus 256 ~~~G~Did~--r~i~~Ak~NA~~AGv~d~I~f~ 286 (381)
T COG0116 256 IIYGSDIDP--RHIEGAKANARAAGVGDLIEFK 286 (381)
T ss_pred eEEEecCCH--HHHHHHHHHHHhcCCCceEEEE
Confidence 277999998 5999999999999999988764
No 219
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.10 E-value=0.17 Score=42.15 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=50.3
Q ss_pred echHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 52 W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
=++|...+..+... .-.+.+|||++||.|-=+..++.. + ..|++.|.+.. -++.+++|+++-|+.+
T Consensus 97 d~sS~l~~~~L~~~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl~r~G~~n 165 (470)
T PRK11933 97 EASSMLPVAALFAD--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANISRCGVSN 165 (470)
T ss_pred CHHHHHHHHHhccC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHcCCCe
Confidence 34555556655332 236789999999999999877764 2 27999999984 8999999999988864
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.74 E-value=0.16 Score=37.80 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=28.4
Q ss_pred cCCCCeEEEecccCChHHHHHhh-cCC-EEEEEecCChHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~-~~~-~v~~tD~~~~~~~l~~~~~n 113 (128)
.-++...+|||||.|-+-+.+|. .+. +++++++.+. ..+.++.+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~--~~~~a~~~ 85 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE--LHDLAEEL 85 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH--HHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH--HHHHHHHH
Confidence 44577999999999999887664 455 6999999974 55555443
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.70 E-value=0.17 Score=38.50 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=48.4
Q ss_pred cCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
.+..+++||||.=||..++..|.. +.+|++.|.+. +..+....-++.-++..+|++.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~~KI~~i 130 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVDHKITFI 130 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhccccceeeee
Confidence 456789999999999999988765 45899999998 4888889999999999888753
No 222
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.69 E-value=0.052 Score=41.26 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=55.4
Q ss_pred echHHHHHHHHHhcccc-CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 52 W~~s~~l~~~i~~~~~~-~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
|-.-.-.+.++...... ..-.+|+|.=||.|--.+..+..++.|+++|+++ .=+..++.|++.=|+.++|..
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEE
Confidence 33444445555432221 1345799999999999999999999999999998 489999999999999998865
No 223
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.089 Score=37.84 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=42.2
Q ss_pred eEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHHHhCCCCc
Q 033085 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~ 122 (128)
+.+|||+|-|-+-+.++++|. +.++.++++. ++..++....+.++..+
T Consensus 75 klvDlGSGDGRiVlaaar~g~~~a~GvELNpw--LVaysrl~a~R~g~~k~ 123 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCGLRPAVGVELNPW--LVAYSRLHAWRAGCAKS 123 (199)
T ss_pred cEEeccCCCceeehhhhhhCCCcCCceeccHH--HHHHHHHHHHHHhcccc
Confidence 689999999999999999996 8999999986 88899888888777644
No 224
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.45 E-value=0.096 Score=41.97 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=55.0
Q ss_pred HHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 56 ~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
..||..+.+....-+|..|||==||||-.-+-+...|++|+++|++. .|++-++.|.+.=++.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~i~~ 246 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYGIED 246 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhCcCc
Confidence 45677776666666889999999999999999999999999999998 59999999998877654
No 225
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.40 E-value=0.023 Score=43.53 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=38.9
Q ss_pred CCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+|.+|||-..|.|..++.+++.|+ +|+-++.++. +++.+..|=
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNP 177 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNP 177 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCC
Confidence 788999999999999999999999 9999999985 888877664
No 226
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.32 E-value=0.089 Score=35.53 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.6
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecC
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~ 101 (128)
...+|||||.|++--.+.+-|.+=.+.|.-
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCccccccc
Confidence 469999999999999999988876777764
No 227
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.31 E-value=0.14 Score=38.10 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred eEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
+|||+|||||-=+...++.-. +-.-+|.++ ..+..++..+...+++.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~~N 76 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGLPN 76 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCCcc
Confidence 699999999999998888654 567788887 36678888887777653
No 228
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.30 E-value=0.073 Score=42.57 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++..+++||||-|-=-+-+-+.|. +++++|+... .++.|++--
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RY 160 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRY 160 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHH
Confidence 456899999999988888888887 8999999985 888887654
No 229
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.99 E-value=0.2 Score=41.98 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+..+||+|||.|-.-+.+|+... .++++|.... .+..+.+.+...++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~--~~~~~~~~~~~~~l~ 397 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN--GVANVLKLAGEQNIT 397 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHHHcCCC
Confidence 466999999999999998888765 7999999973 777777777777775
No 230
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.17 Score=40.92 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCeEEEecccCChHHHHHhhc-CC-EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..+|+|-=||||+=||-.+.- +. +|++-|+++ ++++.++.|++.|...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N~~~ 102 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLNSGE 102 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhcCcc
Confidence 679999999999999988764 44 899999998 5999999999999443
No 231
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.34 E-value=0.17 Score=38.88 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=40.3
Q ss_pred CCCeEEEeccc-CChHHHH-HhhcCCEEEEEecCChHHHHHHHHHHHHHh-CCCCceEe
Q 033085 70 SGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~-~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N-~l~~~v~~ 125 (128)
++-++||+|.| ..+..++ ....|.+.+++|+++. .+..|+.++..| +++..++.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~--sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ--SLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHH--HHHHHHHHHHcCcchhhheeE
Confidence 44588999988 4444433 2345679999999984 999999999999 77765554
No 232
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.72 E-value=1 Score=35.62 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=44.7
Q ss_pred CCCeEEEecccCChHHHHHhh-cC---CEEEEEecCChHHHHHHHHHHHHHhCCCCceEeec
Q 033085 70 SGANVVELGAGTSLPGLVAAK-VG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYRN 127 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-~~---~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~~ 127 (128)
+.-+|||+.||.|-.=+-+.. .. ..|.+.|+++ ..++..+.-++.+++.+.+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~~i~~f~~ 194 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLEDIARFEQ 194 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCccceEEEe
Confidence 345999999999988664433 22 3799999998 49999999999999998776653
No 233
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.70 E-value=0.39 Score=33.24 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=28.5
Q ss_pred HHHHHHHhccccCCCCeEEEeccc-CChHHHHHhhcCCEEEEEecCC
Q 033085 57 ILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 57 ~l~~~i~~~~~~~~~~~vLELG~G-tGl~~l~~a~~~~~v~~tD~~~ 102 (128)
.+++|+..+. ...+++|+|-| ---++..+.+.|..|++||.++
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4788887543 23489999999 4456667788899999999997
No 234
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.20 E-value=0.52 Score=36.25 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHHhCCCCceEeec
Q 033085 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYRN 127 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~~ 127 (128)
-.+|+|||||.=-+++...... +.+++.|++. .+++.+..-+..-+...++..++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~--~~ve~l~~~l~~l~~~~~~~v~D 162 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDS--QLVEFLNAFLAVLGVPHDARVRD 162 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBH--HHHHHHHHHHHHTT-CEEEEEE-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCH--HHHHHHHHHHHhhCCCcceeEee
Confidence 4589999999998888776653 5899999998 49999988887777766555443
No 235
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.58 E-value=0.46 Score=36.58 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=34.4
Q ss_pred eEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+++||-||.|-+++.+.+.|. .|.+.|.++ .+++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~--~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK--SAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH--HHHHHHHHhC
Confidence 689999999999998988888 578899998 4888777775
No 236
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.44 E-value=1.4 Score=33.76 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhh--cCCEEEEEecCChHHHHHHHHHHHHHhCCCCce
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~--~~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v 123 (128)
.-+...++.++.=+.|+.++ ..+.|++||=+|=. =+.||.++. ...+|++.|+++ .+++.+.+.++..+++ |
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~--i 94 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAER-GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLP--I 94 (243)
T ss_dssp T---B-HHHHHHHHHHHHHT-T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT----E
T ss_pred ccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCc--e
Confidence 34666777888888888765 45689999999955 455555554 445899999998 5999999999999998 5
Q ss_pred Eeec
Q 033085 124 NYRN 127 (128)
Q Consensus 124 ~~~~ 127 (128)
++..
T Consensus 95 ~~~~ 98 (243)
T PF01861_consen 95 EAVH 98 (243)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 5543
No 237
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.44 E-value=0.45 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCeEEEecccCCh----HHHHHhh-----cC--CEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSL----PGLVAAK-----VG--SNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl----~~l~~a~-----~~--~~v~~tD~~~~~~~l~~~~~ 112 (128)
+.-+|+-.||+||= +++++.. .+ .+|++||+++ .+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHHHHh
Confidence 34599999999994 4444444 12 3899999998 48888765
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.43 E-value=0.62 Score=34.79 Aligned_cols=49 Identities=27% Similarity=0.116 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~ 102 (128)
+++-|.+......-...+.+|+||||--|-.+=.++++.. +|+++|+.+
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 5666666666553333578999999999999998887643 499999987
No 239
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.28 E-value=0.56 Score=29.74 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEecccCChHHHHHhhcC---CEEEEEecCChHHHHHHHHHH
Q 033085 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 74 vLELG~GtGl~~l~~a~~~---~~v~~tD~~~~~~~l~~~~~n 113 (128)
++|+|||+|... .+++.. ..++++|.++ .++...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~--~~~~~~~~~ 91 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP--EMLALARAR 91 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCH--HHHHHHHhh
Confidence 999999999976 444433 3788888887 366664433
No 240
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.86 E-value=0.6 Score=37.03 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCeEEEecccCChHHH-HHh---hc--CCEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGL-VAA---KV--GSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l-~~a---~~--~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.+..+||||||.|-=.- ++. +. ..+.+.+|++. ++++.+..++..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~~ 126 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELPL 126 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhhh
Confidence 45589999999887433 222 22 34789999997 488888888873
No 241
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.82 E-value=0.18 Score=40.42 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=37.4
Q ss_pred EEEecccC-ChHHHHHhhc-CCEEEEEecCChHHHHHHHHHHHHHhCCCCceEee
Q 033085 74 VVELGAGT-SLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNYR 126 (128)
Q Consensus 74 vLELG~Gt-Gl~~l~~a~~-~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~~ 126 (128)
=+|+|.|+ .+-.++-+.. +...++||+++. .++.+..|+..|+++..++.+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV 158 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVV 158 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeE
Confidence 36777773 3333333333 447999999984 889999999999999988875
No 242
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.19 E-value=0.75 Score=38.63 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=37.6
Q ss_pred CCCCceEeechHHHHHHHHHhcccc-CC-C--CeEEEecccCChHHHHHhhcCCEE
Q 033085 44 KEEYGLFVWPCSVILAEYVWQQRYR-FS-G--ANVVELGAGTSLPGLVAAKVGSNV 95 (128)
Q Consensus 44 ~~~~G~~~W~~s~~l~~~i~~~~~~-~~-~--~~vLELG~GtGl~~l~~a~~~~~v 95 (128)
.++.|.+...++....++|.+-... .. + ..+||+|||+|..|-.+...+-.+
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t 142 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTT 142 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceE
Confidence 3567777777887777777653322 12 2 379999999999999998887643
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.04 E-value=0.25 Score=38.01 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=30.1
Q ss_pred ccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHH
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n 113 (128)
...+|.++||+|||.-+..++.|.... +|+++|+.+. .++.+++=
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~--N~~el~kW 98 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ--NREELEKW 98 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH--HHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh--hHHHHHHH
Confidence 345788999999998888776665544 8999999973 55555543
No 244
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.96 E-value=1.6 Score=31.43 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
=.+.|.+.+.... ..+|..|||-=||+|-.++++.++|.+.+++|+++ +.++.|++
T Consensus 176 kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~--~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE--EYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH--HHHHHHHH
T ss_pred CCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCCeEEEEeCCH--HHHHHhcC
Confidence 3455555554322 23578999999999999999999999999999998 47776653
No 245
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=89.83 E-value=2 Score=34.38 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc----CCEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 54 ~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~----~~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
+|.+.+..+... .|.+|||+.++-|-=+..++.+ +..|++.|.++. =++.++.|+++-|+.+
T Consensus 144 sS~l~a~~L~p~----pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 144 ASQLPALVLDPK----PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLKRLGVRN 209 (355)
T ss_pred HHHHHHHHcCCC----CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHHHcCCCc
Confidence 555556555433 5789999999977777666654 345799999984 8999999999999986
No 246
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=89.74 E-value=1.8 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.113 Sum_probs=37.8
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
...+||-=|||.|-++.-+|++|..+.+.+.+.. | ++..|..+|..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~--M--ll~s~fiLn~~ 101 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYF--M--LLASNFILNHC 101 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHH--H--HHHHHHHHccc
Confidence 3569999999999999999999999999999863 4 55566666653
No 247
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=89.71 E-value=0.11 Score=39.46 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
.+++||||+|-|=+....+....+|++|+++. .|...+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh
Confidence 46999999999999998887777888998887 47766654
No 248
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.35 E-value=0.71 Score=35.78 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.9
Q ss_pred CCeEEEecccCCh----HHHHHhhcC-------CEEEEEecCChHHHHHHHHH
Q 033085 71 GANVVELGAGTSL----PGLVAAKVG-------SNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 71 ~~~vLELG~GtGl----~~l~~a~~~-------~~v~~tD~~~~~~~l~~~~~ 112 (128)
.-+|+..||+||= +++++.... .+|++||++.. +|+.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~--~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS--VLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH--HHHHHhc
Confidence 4599999999993 455554432 38999999984 8888765
No 249
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.16 E-value=1 Score=34.72 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=30.6
Q ss_pred HHHHhccccCCCCeEEEecccCChHHHHHhhcC-------CEEEEEecCC
Q 033085 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (128)
Q Consensus 60 ~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~-------~~v~~tD~~~ 102 (128)
..|....-...+..++|+|||.|.++-.++..- .+++++|-..
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 334433223356689999999999999887753 3789999864
No 250
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.02 E-value=0.16 Score=42.50 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=45.9
Q ss_pred CCCeEEEecccCChHHHHHhhc--CC-EEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--~~-~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
++.+|||-=|+||+-+|-.++. +. +|++-|.++ ..++.++.|++.|+..+.|..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~--~aV~~i~~Nv~~N~v~~ive~ 165 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNE--NAVTSIQRNVELNGVEDIVEP 165 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCH--HHHHHHHhhhhhcCchhhccc
Confidence 4458999999999999988885 22 799999998 499999999999988877643
No 251
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.97 E-value=0.8 Score=38.60 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=33.8
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
..+.+|+=+||| .|+.++.+++ +|++|+++|.++ +-++.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 357899999999 8999997776 588999999987 36665554
No 252
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=88.82 E-value=0.86 Score=35.18 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=33.6
Q ss_pred CeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
..++|+|||.|.+.-.+.+.+. +++.+|.+.. |++.++.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~--M~~s~~~ 113 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYD--MIKSCRD 113 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchH--HHHHhhc
Confidence 4799999999999998888776 8999999984 8887765
No 253
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.53 E-value=5.1 Score=31.04 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHHHHHHhCCCCc
Q 033085 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~ 122 (128)
..-+.+++.+-.+.-.+.. ...+.+|||+.|+.|-=+..++.. + ..|++.|.+. .=+..++.|++.-|+...
T Consensus 64 ~G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~--~Rl~~l~~~~~r~g~~~v 138 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP--KRLKRLKENLKRLGVFNV 138 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHHHHHHTT-SSE
T ss_pred CCcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCH--HHHHHHHHHHHhcCCceE
Confidence 3455677766555554432 236778999999999888766654 3 3899999998 489999999999888754
Q ss_pred e
Q 033085 123 V 123 (128)
Q Consensus 123 v 123 (128)
.
T Consensus 139 ~ 139 (283)
T PF01189_consen 139 I 139 (283)
T ss_dssp E
T ss_pred E
Confidence 3
No 254
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.25 E-value=1.4 Score=35.06 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=32.9
Q ss_pred CCCeEEEeccc-CChHHHHHhhc-CC-EEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
.+.+|+=+||| .|++++.+++. |+ +|+++|.++. =++.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~--Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE--RLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHHHHH
Confidence 44489999999 89999888875 55 8999999873 6777765
No 255
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.03 E-value=1.8 Score=32.66 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.0
Q ss_pred CeEEEecccCChHHHHHhhc----------CCEEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~----------~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
-+|+|+|+|+|.++.-+... ..++++++.++ .+...+++.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp---~L~~~Q~~~ 69 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP---YLRERQKER 69 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC---CCHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH---HHHHHHHHH
Confidence 59999999999999855431 23799999998 344444443
No 256
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.56 E-value=1.4 Score=33.39 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCeEEEecccCChHHHHHhhcC--CEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
+.++||-+|-|.|...-.+.+.. .+|+++|+++ .+++.+++-...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPE 122 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchh
Confidence 56799999999999998888876 4899999998 499999887654
No 257
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.37 E-value=1.2 Score=34.78 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhc-----cccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCC
Q 033085 54 CSVILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 54 ~s~~l~~~i~~~-----~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~ 102 (128)
+-+.|..||... .+...++.+.|+=+|||++|-.+-+.|.+|++-|+..
T Consensus 6 sK~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 6 SKYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 446677888753 3456788999999999999999999999999999976
No 258
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=87.26 E-value=1.3 Score=34.60 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=30.4
Q ss_pred CeEEEecccCCh----HHHHHhhc------CCEEEEEecCChHHHHHHHHHH
Q 033085 72 ANVVELGAGTSL----PGLVAAKV------GSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 72 ~~vLELG~GtGl----~~l~~a~~------~~~v~~tD~~~~~~~l~~~~~n 113 (128)
-+|+-.||+||= +++++... ..+|++||++. .+++.|+.-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HHHHHHHhC
Confidence 599999999994 44444442 23799999998 499988875
No 259
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.58 E-value=1.7 Score=35.75 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=28.4
Q ss_pred ccCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
..+.|++|+=+|+| .|+.....++ .|++|+++|.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35689999999999 6766665554 588999999986
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.44 E-value=1.6 Score=34.98 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=33.3
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCChHHHHHHHHHH
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
...|++|+=.|+| .|.+++.+|+ .|++|++.|.++. -++.+++-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~--K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE--KLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH--HHHHHHHh
Confidence 3468888888888 6777777777 7999999999984 55555543
No 261
>PRK13699 putative methylase; Provisional
Probab=86.26 E-value=5 Score=30.06 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=38.7
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
+|..|||-=||+|-.++.+.++|.+.+++|+++ +-.+.+.+.++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~--~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE--QYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH--HHHHHHHHHHHH
Confidence 677999999999999999999999999999997 477777666543
No 262
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.78 E-value=3.9 Score=33.65 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=30.0
Q ss_pred CeEEEecccCChHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~ 111 (128)
+.++|+|+|-|.++-+++- .|..|.++|.+.. ..+.++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~--~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR--LVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchH--HHHHHH
Confidence 5899999999999988775 5669999999963 444443
No 263
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=85.59 E-value=1.8 Score=32.95 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.9
Q ss_pred CeEEEecccCChHHHHHhhc-C---CEEEEEecCChHHHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~-~---~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
-.+.|=.||+|.+--.+.-+ + ..|+++|+++ ++++.+++|..+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~--~aL~lA~kNL~L 99 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE--DALELARKNLSL 99 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H--HHHHHHHHHHHC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH--HHHHHHHHhhhh
Confidence 48999999999766544432 2 2799999998 599999999864
No 264
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=84.86 E-value=3.5 Score=32.18 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=36.4
Q ss_pred CeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++||-+|-|.|-..-.+.+... +++++|+++ ++++.+++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l 120 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYL 120 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhc
Confidence 5999999999999999999874 899999998 4999888765
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.16 E-value=0.64 Score=30.00 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=10.3
Q ss_pred EEecccCChHHHHHhhc----C-CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 75 VELGAGTSLPGLVAAKV----G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 75 LELG~GtGl~~l~~a~~----~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
||+|+..|..++.+++. + .+++++|..+ -.+..+++++..++.+++..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~---~~~~~~~~~~~~~~~~~~~~ 53 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP---GDEQAQEIIKKAGLSDRVEF 53 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCC---cccccchhhhhcCCCCeEEE
Confidence 69999999888876653 2 2699999987 24455666665666665554
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=83.90 E-value=6.4 Score=30.29 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+|..|||-=+|+|-.++++.++|.+.++.|+++ +-++.+++-+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~--~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS--EYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHH
Confidence 4788999999999999999999999999999997 58887777754
No 267
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=83.71 E-value=1.3 Score=33.30 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCCeEEEecccCChHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l-~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
...++||.|||.|-++- ++.+...+|-++|..+ ..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcc
Confidence 45699999999999997 5566666999999987 488888865543
No 268
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=83.53 E-value=7.5 Score=27.87 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHhccccCCCCeEEEeccc--CCh-HHHHHhhcCCEEEEEecCC
Q 033085 61 YVWQQRYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 61 ~i~~~~~~~~~~~vLELG~G--tGl-~~l~~a~~~~~v~~tD~~~ 102 (128)
++......+.+++||=+|+| .|. +.-.+.+.|++|++++-..
T Consensus 34 l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 34 LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 33333346789999999999 377 5556667788898888765
No 269
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=82.64 E-value=2.7 Score=31.65 Aligned_cols=36 Identities=14% Similarity=0.423 Sum_probs=18.8
Q ss_pred eechH--HHHHHHHHhccccCCCCeEEEecccCChHHHHHh
Q 033085 51 VWPCS--VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89 (128)
Q Consensus 51 ~W~~s--~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a 89 (128)
.||-- ....++|...+ +...|-|+|||-+.++-.+.
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~ 91 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP 91 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH--
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc
Confidence 46643 23444554322 45699999999999985543
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=82.55 E-value=3.5 Score=31.86 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=36.9
Q ss_pred CCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
.-++||=+|.|-|...--+.|...+|+++|+++ ++++.+++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~ 112 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFIS 112 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHH
Confidence 347999999999999999999877999999998 59999988
No 271
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.51 E-value=7.6 Score=30.67 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=38.2
Q ss_pred ccCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 67 YRFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
....|+.||==|+|.|+--.+ +|+.|+++++.|.+.. -.+...+.++.+|
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g 86 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG 86 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC
Confidence 356889999999999986554 5678999999999984 5555556666555
No 272
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.50 E-value=5.3 Score=32.81 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=33.5
Q ss_pred cCCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
.+++++|+=+|+| +|+... ++++.|.+|++.|..+. +....+.+.++.+++
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv 65 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGA 65 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCC
Confidence 4567899999998 666433 44567889999997763 344444444555554
No 273
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.18 E-value=3.8 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred EecccCChHHH--HH--hhcC--CEEEEEecCChHHHHHHHHHH--HHHhCCCC
Q 033085 76 ELGAGTSLPGL--VA--AKVG--SNVTLTDDSNRIEVLKNMRRV--CEMNKLNC 121 (128)
Q Consensus 76 ELG~GtGl~~l--~~--a~~~--~~v~~tD~~~~~~~l~~~~~n--~~~N~l~~ 121 (128)
|+||..|..+. .. ++++ .+|++.+-++ ..++.++.| +..|....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p--~~~~~l~~~~~~~l~~~~~ 52 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP--SNFEKLKRNLNLALNDKDG 52 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H--HHHHHHHHH--HHHTTTST
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH--HHHHHHhHHHHHHhcCCCc
Confidence 78999993333 22 2343 4788888887 599999999 88886644
No 274
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=6.5 Score=31.94 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccc---cCCCCeEEEecccCChHHHHHhh----c------CCEEEEEecCChHHHHHHHHHHH
Q 033085 55 SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAK----V------GSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 55 s~~l~~~i~~~~~---~~~~~~vLELG~GtGl~~l~~a~----~------~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+..++.|+.+.-. ......++|+|+|+|.+.--+.+ . ..++..++.++ -+...+++.
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~---~L~~~Qk~~ 128 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP---ELRARQKET 128 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH---HHHHHHHHH
Confidence 4556666554211 22334799999999999874433 1 34899999997 344444443
No 275
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=81.31 E-value=3.2 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCC
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~ 102 (128)
|+.+|.+........+++|+=||+|.+++.+.+.+.+|++-|+++
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 455665532222567999999999999988877778999999997
No 276
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=81.06 E-value=4 Score=31.79 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=33.5
Q ss_pred CeEEEeccc-CChHHHHHhhc---CCEEEEEecCChHHHHHHHHHHHH-HhCCCCceEe
Q 033085 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVNY 125 (128)
Q Consensus 72 ~~vLELG~G-tGl~~l~~a~~---~~~v~~tD~~~~~~~l~~~~~n~~-~N~l~~~v~~ 125 (128)
++|+=+||| .-+-++.+++. +..|+..|.++ ++++.+++-++ ..++..++++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~--~A~~~a~~lv~~~~~L~~~m~f 178 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP--EANELARRLVASDLGLSKRMSF 178 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH--HHHHHHHHHHH---HH-SSEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHHHhhcccccCCeEE
Confidence 489999999 78888888764 45799999997 59999998887 5677776654
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.04 E-value=3.7 Score=31.29 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=23.3
Q ss_pred eEEEecccCChHHHHHhhcCCEEEEEecCC
Q 033085 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~~v~~tD~~~ 102 (128)
+|||.-+|.|-=+++++..|++|++.+-++
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErsp 107 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSP 107 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--H
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCH
Confidence 899999999999999999999999999998
No 278
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=80.71 E-value=6.2 Score=32.52 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=35.8
Q ss_pred CeEEEecccCChHHHHHhhcC-C-EEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~-~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.++|-||-|-|+..-.+.|.- . +|+.+|++| +|++.+++|.
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~ 333 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHAT 333 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhh
Confidence 589999999999999888875 3 899999998 5999999664
No 279
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.71 E-value=3.8 Score=28.14 Aligned_cols=42 Identities=33% Similarity=0.368 Sum_probs=28.8
Q ss_pred HHHHHHhccccCCCCeEEEecccCC-hHHHHHhhcCCEEEEEecCC
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtG-l~~l~~a~~~~~v~~tD~~~ 102 (128)
+++|+... .-+| +|+|+|.|-= -++-.+++.|..|++||+++
T Consensus 4 ~a~~iAre--~~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 4 VAEYIARE--NARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred HHHHHHHH--hcCC-cEEEEccchHHHHHHHHHHcCCcEEEEeccc
Confidence 45555532 1134 8999999832 34456778899999999987
No 280
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=80.56 E-value=12 Score=29.69 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=37.1
Q ss_pred CCCeEEEecccCChHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~-~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.+..+||--+|.|-=+..+++. + .+|++.|.++ ++++.+++..+.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~--~Al~~ak~~L~~ 66 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP--QAIAFAKERLSD 66 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHhh
Confidence 5678999999999888877764 2 5899999997 599998887654
No 281
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.24 E-value=4.5 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=34.3
Q ss_pred eEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 033085 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
+++||=||.|.+++.+.+.|. .|.+.|+++ .+++..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~--~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP--DACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH--HHHHhhhhccc
Confidence 689999999999999999997 689999998 37777777764
No 282
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=79.72 E-value=1.3 Score=36.08 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCeEEEecccCChHHHHHhh---------c---C-----CEEEEEecCCh
Q 033085 71 GANVVELGAGTSLPGLVAAK---------V---G-----SNVTLTDDSNR 103 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~---------~---~-----~~v~~tD~~~~ 103 (128)
..+|+|||||+|..++.+.. + + .+|+..|+..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 45899999999988876532 1 1 26888888754
No 283
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.29 E-value=7.5 Score=31.62 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=38.7
Q ss_pred EeechHHHHHHHHHhccccCCCCeEEEeccc-CChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 50 ~~W~~s~~l~~~i~~~~~~~~~~~vLELG~G-tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
..|+...+..+.|.-. .+.+||-+.+| +-.+.+ +++--++|+++|+++. .+.+++..
T Consensus 19 ~~WEDp~vD~~aL~i~----~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~--Q~aLleLK 76 (380)
T PF11899_consen 19 QCWEDPRVDMEALNIG----PDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPA--QNALLELK 76 (380)
T ss_pred cccCCcHHHHHHhCCC----CCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHH--HHHHHHHH
Confidence 5799988888887644 56688888766 444443 4444468999999986 44444443
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.19 E-value=10 Score=29.42 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=28.5
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCChHHHHHHHH
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~~~~~l~~~~ 111 (128)
.++.+||=.||| .|++.+.+++ .|+ +|+++|.++ +-++.++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~ 211 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLAR 211 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHH
Confidence 367888888987 6666666665 466 699999876 3555444
No 285
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.87 E-value=4.7 Score=31.45 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCCCeEEEeccc-CChHHHHHhh--cC-CEEEEEecCChHHHHHHHH
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~--~~-~~v~~tD~~~~~~~l~~~~ 111 (128)
..+.+||=+||| .|++.+.+++ .| .+|+++|.++. =++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~--k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE--KLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh--HHHHHh
Confidence 357899999987 7777666565 34 48999998762 444444
No 286
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.91 E-value=16 Score=26.76 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
++++++|=.|++.|+-.- .+++.|++|++++.+. +.++.+.+.+...
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~ 52 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSAL 52 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhc
Confidence 467889999999888433 4456788999988776 3555554444443
No 287
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.40 E-value=14 Score=28.76 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=25.4
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...+.+||=+|+| .|++.+.+++ .|.+|+++|.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 3457899999986 4666665555 477899998876
No 288
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.32 E-value=14 Score=27.80 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCCE-EEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~~-v~~tD~~~ 102 (128)
..+.+||=.|+| .|++.+.+++ .|.+ |+++|.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 367889989886 5666555555 4765 88888765
No 289
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.12 E-value=7 Score=32.47 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.0
Q ss_pred CCCCeEEEeccc-CChHHHH-HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~-~a~~~~~v~~tD~~~ 102 (128)
+.+++|+=+|.| +|+..+. +.+.|++|+++|..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 367899999999 8877774 446788999999765
No 290
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=73.44 E-value=26 Score=26.69 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCceEeech--HHHHHHHHHh--ccccCCCCeEEEecccCChHHHHHhhc-C--CEEEEEecCChHHHHHHHHH
Q 033085 46 EYGLFVWPC--SVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 46 ~~G~~~W~~--s~~l~~~i~~--~~~~~~~~~vLELG~GtGl~~l~~a~~-~--~~v~~tD~~~~~~~l~~~~~ 112 (128)
...+|+|+. |.+-|..+.. +.....|.+||=||+.+|.----++-. + -.|++++.++. ..+.+..
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r--~~rdL~~ 116 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR--SMRDLLN 116 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH--HHHHHHH
T ss_pred ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecch--hHHHHHH
Confidence 348899987 3333333332 123446889999999999876666543 3 27999999984 5544443
No 291
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.35 E-value=9.4 Score=27.41 Aligned_cols=39 Identities=41% Similarity=0.509 Sum_probs=24.4
Q ss_pred EEEecccCChHHH----HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 74 VVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 74 vLELG~GtGl~~l----~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
|-=+|+| .+|. .++..|.+|++.|.++ +.++.+++.+..
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~--~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGYEVTLYDRSP--EALERARKRIER 44 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEE-SSH--HHHHHHHHHHHH
T ss_pred EEEEcCC--HHHHHHHHHHHhCCCcEEEEECCh--HHHHhhhhHHHH
Confidence 4446665 3333 4455689999999997 477776666543
No 292
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=72.95 E-value=15 Score=28.91 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=24.5
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|++.+.+++ .|+ +|+++|.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~ 226 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE 226 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 3457778888876 5555555555 477 699998876
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=72.66 E-value=12 Score=29.66 Aligned_cols=43 Identities=30% Similarity=0.334 Sum_probs=30.6
Q ss_pred cCCCCeEEEecccC-ChHHHHHhhc-CC-EEEEEecCChHHHHHHHHH
Q 033085 68 RFSGANVVELGAGT-SLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
...+.+||.+|||+ |.+.+.+++. |. +|++++.++ +.++.++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~--~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP--ERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHH
Confidence 34678899999875 7777766664 65 599998886 36666554
No 294
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=72.22 E-value=12 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=25.5
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.||| .|++.+.+++ .|+ +|+++|.++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 3457888888986 5666665665 577 799998876
No 295
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=71.32 E-value=15 Score=28.17 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=33.7
Q ss_pred CCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.+|.+||++|=|-|++.-++..... +=..++-++ ++++.++.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~g 144 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWG 144 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcc
Confidence 3788999999999999988877654 345556665 5888887764
No 296
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.15 E-value=8.8 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=32.5
Q ss_pred EEEecccCChHHHHHhhcCCE-EEEEecCChHHHHHHHHHHH
Q 033085 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 74 vLELG~GtGl~~l~~a~~~~~-v~~tD~~~~~~~l~~~~~n~ 114 (128)
|+||=||.|-+++.+.+.|.+ +.+.|.++ .+++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhC
Confidence 589999999999999999986 56799987 3777777775
No 297
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.13 E-value=25 Score=25.77 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.+. +-++.+...+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~ 55 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGT 55 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHh
Confidence 4678999999877765543 345688999988875 345555444443
No 298
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=70.98 E-value=7.7 Score=29.42 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=30.7
Q ss_pred CCeEEEecccCChHHHHHhhcCCE--EEEEecCChHHHHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~~~--v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.-.+.|+|||-|-+-+.++.+... +++.++-. .+.+..+..|++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~--KVsdYVk~RI~A 106 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD--KVSDYVKERIQA 106 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhH--HHHHHHHHHHHH
Confidence 346899999999888888877663 55555554 366666666543
No 299
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.81 E-value=7.4 Score=28.17 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEeccc-CChHH-HHHhhcCCEEEEEecCChHHHHHHH
Q 033085 74 VVELGAG-TSLPG-LVAAKVGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 74 vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~~~~~l~~~ 110 (128)
|-=+|.| .|+.. ..+|+.|.+|++.|.++ +.++.+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~--~~v~~l 39 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE--EKVEAL 39 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H--HHHHHH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh--HHHHHH
Confidence 4445555 44332 25567889999999997 355544
No 300
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.46 E-value=19 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=28.0
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCChHHHHHHHHH
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
...+.+||=.|+| .|++.+.+++ .|++|++++.++. -++.+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~--~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA--ARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHH
Confidence 3457889999975 5555554554 5778999988763 3444433
No 301
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.28 E-value=7.5 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=27.1
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...|++|+=+|+| .|......++ .|++|+++|.++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4689999999999 5665554444 578999999887
No 302
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=69.21 E-value=8.5 Score=31.55 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.8
Q ss_pred cCCCCeEEEeccc-CChHH--HHHhhcCCEEEEEecCCh
Q 033085 68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~--l~~a~~~~~v~~tD~~~~ 103 (128)
..++++|+=+|.| +|+.+ .++.+.|++|+++|..+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3466788999988 88874 467788999999998864
No 303
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=68.92 E-value=13 Score=30.18 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.2
Q ss_pred cCCCCeEEEeccc-CChHHHHHhhc-CC-EEEEEecCChHHHHHHHH
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~~-~~-~v~~tD~~~~~~~l~~~~ 111 (128)
.-.|..+.-.||| .|+.++.-|+. |+ +++++|.++. =++.++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~--Kl~~A~ 227 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE--KLELAK 227 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH--HHHHHH
Confidence 3367788899998 89999987774 66 8999999984 544444
No 304
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.28 E-value=38 Score=24.70 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred cCCCCeEEEecccCChHHHHH---hhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.++++++|=.|++.|+-.-++ ++.|++|++++-++ +.++.+...++.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~ 57 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA--ATLEAAVAALRA 57 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHh
Confidence 357889999997766654432 34588999998875 244444444443
No 305
>PLN02740 Alcohol dehydrogenase-like
Probab=68.25 E-value=11 Score=29.90 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=27.8
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCChHHHHHHH
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~~~~~l~~~ 110 (128)
...+.+||=.|+| .|++.+.+++ .|+ +|+++|.++ +-++.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~--~r~~~a 239 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP--EKFEKG 239 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHH
Confidence 3467889999986 5666665555 577 699998876 244444
No 306
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=68.14 E-value=6.1 Score=25.95 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=21.4
Q ss_pred cCChHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 033085 80 GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 80 GtGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~ 111 (128)
|.|++.+.+++ .|++|+++|.++. -++.++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~--k~~~~~ 31 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEE--KLELAK 31 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH--HHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHH--HHHHHH
Confidence 46788887776 5789999999873 444443
No 307
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.74 E-value=12 Score=31.65 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCChHHHHHHHH
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~~ 111 (128)
.+.+++=+|+| .|+..+.+++ +|+.|++.|.++. .++.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~--rle~a~ 204 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE--VKEQVQ 204 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHH
Confidence 45799999999 7888886665 6889999999873 555444
No 308
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.99 E-value=22 Score=27.27 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=23.9
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCE-EEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~-v~~tD~~~ 102 (128)
...+.+||=+|+| .|++.+.+++ .|++ |++++.++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3457888888876 5555554554 5776 99998765
No 309
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.94 E-value=34 Score=25.70 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=-|++.|+-.-+ +++.|++|++++.+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5678888888877765443 344678899888775
No 310
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.74 E-value=5.4 Score=32.68 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=36.1
Q ss_pred ccCCCCeEEEecccCChHHHHHhhcCC---EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 67 YRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~~~---~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
..|.-++|||+|+|.|....++-..-. .+++.+.++ .++.....+.+|-..
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t 163 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVST 163 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhccc
Confidence 466778899999997776554444433 577778776 777777777777554
No 311
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=66.58 E-value=39 Score=25.91 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=37.7
Q ss_pred ccCCCCeEEEecccCChH---HHHHhhcCCEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~---~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
..+.++++|-=|+..|+- ...+++.|++|+.++.+. +.++....-....+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~--~~~~~~~~~~~~~~~ 57 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE--ERLEETAQELGGLGY 57 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 356899999999999986 346788999999999987 366555555444333
No 312
>PRK09242 tropinone reductase; Provisional
Probab=66.02 E-value=49 Score=24.20 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=31.3
Q ss_pred cCCCCeEEEecccCChHHHHH---hhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.++++++|=.|++.|+-.-++ ++.|++|++++.+. +-++.+..++..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~l~~ 55 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA--DALAQARDELAE 55 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHh
Confidence 346888999998776655543 44688999998775 345555555443
No 313
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=65.99 E-value=18 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred EeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCCh
Q 033085 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 50 ~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~ 103 (128)
++|+...+=.+.|.. -.|.+|+-+|+|-..+--++++.-+.|.++|+++.
T Consensus 47 qiwEDp~Vdmeam~~----g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~a 96 (414)
T COG5379 47 QIWEDPSVDMEAMQL----GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPA 96 (414)
T ss_pred cccCCccccHHHHhc----CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHH
Confidence 456555444444432 25679999999977555566777779999999985
No 314
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.33 E-value=46 Score=24.23 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-+ +++.|++|++++-++. -++.+...+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~ 51 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALI 51 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHH
Confidence 4678899999876665553 3446788999988763 344444443
No 315
>PRK07063 short chain dehydrogenase; Provisional
Probab=64.29 E-value=54 Score=24.02 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++++++|=.|++.|+-.- .+++.|++|++++.++ +-++.+...+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~--~~~~~~~~~~~ 52 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA--ALAERAAAAIA 52 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHH
Confidence 467889999987666443 2345688999998876 24444444443
No 316
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=63.53 E-value=12 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.049 Sum_probs=24.5
Q ss_pred CCCeEEEecccCChHHHHHhhcC-C--EEEEEecC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDS 101 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~-~--~v~~tD~~ 101 (128)
++.+|||+||..|..+=.+-+.. . .|.++|+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 67899999999999998777653 2 46666653
No 317
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.51 E-value=52 Score=24.94 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=45.1
Q ss_pred ceEeech--HHHHHHHHHhcc--ccCCCCeEEEecccCChHHHHHhh-cCC-EEEEEecCChHHHHHHHHHHH-HHhCC
Q 033085 48 GLFVWPC--SVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVC-EMNKL 119 (128)
Q Consensus 48 G~~~W~~--s~~l~~~i~~~~--~~~~~~~vLELG~GtGl~~l~~a~-~~~-~v~~tD~~~~~~~l~~~~~n~-~~N~l 119 (128)
-++.|+. |.+-|..+.... ..-.|.+||=||+.+|-..--.+- .+. .|++++.++. ++..+...+ +++++
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R--~~reLl~~a~~R~Ni 126 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR--PMRELLDVAEKRPNI 126 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch--hHHHHHHHHHhCCCc
Confidence 3789987 555555554322 234788999999999976554444 343 6999999984 554444433 45554
No 318
>PLN02494 adenosylhomocysteinase
Probab=63.50 E-value=14 Score=31.15 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=25.8
Q ss_pred cCCCCeEEEeccc-CChHHHHHh-hcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a-~~~~~v~~tD~~~ 102 (128)
.+.|++|+=+|+| .|..-...+ ..|++|+++|.++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999 444443333 3578999999887
No 319
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.80 E-value=12 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCCeEEEeccc-CChHHHHHhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~~~~~v~~tD~~~ 102 (128)
.+++|+=+|.| +|....-+...|++|+++|..+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 57899999999 8888776555688999999654
No 320
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=62.56 E-value=22 Score=29.18 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCceEeechHHHHHHHHHh-ccccCCCCeEEEeccc-CChHH-HHHhhcCCEEEEEecCChHHHHHHH
Q 033085 46 EYGLFVWPCSVILAEYVWQ-QRYRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 46 ~~G~~~W~~s~~l~~~i~~-~~~~~~~~~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~~~~~l~~~ 110 (128)
++|..+|++ |.. ..-...||.++-.|-| +|--. ..+...|++|++|+.+|- .+++.+
T Consensus 190 GtgqS~~Dg-------I~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI-~AleA~ 249 (420)
T COG0499 190 GTGQSLLDG-------ILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI-RALEAA 249 (420)
T ss_pred ccchhHHHH-------HHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCch-HHHHHh
Confidence 455556665 333 2224589999988877 44433 234457899999999983 454443
No 321
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.07 E-value=14 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=27.8
Q ss_pred CCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~ 102 (128)
+.+++|+=+|-| +|.... ++.+.|++|+++|..+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 457899999999 888777 5566789999999764
No 322
>PRK07035 short chain dehydrogenase; Provisional
Probab=62.00 E-value=51 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=29.0
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-++ ++.|++|++++.+.. -++.+.+.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~--~~~~~~~~~ 52 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD--GCQAVADAI 52 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 46778888898877665543 446889999988752 444443333
No 323
>PLN02780 ketoreductase/ oxidoreductase
Probab=61.53 E-value=45 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=31.7
Q ss_pred CCCeEEEecccCChHHH---HHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.|+++|=.|++.|+-.- .+++.|++|++++-++ +-++.+...+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~--~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP--DKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHH
Confidence 47899999988877443 3456788999999886 355555555543
No 324
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.46 E-value=31 Score=28.93 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CCCeEEEecccCChHHHHHhhcC------CEEEEEecCChHHHHHHHHHHHHHhCCCC
Q 033085 70 SGANVVELGAGTSLPGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~~------~~v~~tD~~~~~~~l~~~~~n~~~N~l~~ 121 (128)
...+|.|--||||-+-+.+++.- ..+++.+.++ +....++-|+..+++.-
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~--~t~~l~~mN~~lhgi~~ 241 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND--TTYRLAKMNLILHGIEG 241 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH--HHHHHHHHHHHHhCCCc
Confidence 44589999999998877665431 3478888776 59999999999999973
No 325
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=61.13 E-value=8.9 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=24.7
Q ss_pred ccCChHHH--HHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 79 AGTSLPGL--VAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 79 ~GtGl~~l--~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
||+|+.|| ++..+|.+|.+.|.+..+ +.+.++.
T Consensus 16 gG~GMsglA~iL~~~G~~VsGSD~~~~~-~t~~L~~ 50 (459)
T COG0773 16 GGIGMSGLAEILLNLGYKVSGSDLAESP-MTQRLEA 50 (459)
T ss_pred ccccHHHHHHHHHhCCCceECccccccH-HHHHHHH
Confidence 36888887 566789999999999864 5555543
No 326
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=60.89 E-value=43 Score=26.04 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCCEEEEEec
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDD 100 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~ 100 (128)
..+.+||=.|+| .|++.+.+++ .|++|++++-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 367788888987 5666665555 4679999986
No 327
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=60.29 E-value=47 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=29.9
Q ss_pred cccCCCCeEEEecccCChHHHH----HhhcCCEEEEEecCChHHHHHHHHH
Q 033085 66 RYRFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~----~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
....+|++|+=.|.| -+|.. +.+.|++|+++|.++ +.++.+..
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~--~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINE--EAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHH
Confidence 346788999999998 34443 345688999999986 34444433
No 328
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.01 E-value=65 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++++++|=.|++.|+-.-+ +++.|++|++++-++. -++.+...+.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~ 51 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIR 51 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 3567888888776654443 3456788888887652 4444444443
No 329
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.01 E-value=36 Score=26.67 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
..+.+||=+|+| .|++.+.+++ .|+ +|+++|.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 457788888875 5555554554 577 799998876
No 330
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.88 E-value=57 Score=23.81 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=27.9
Q ss_pred CCCCeEEEecccCChHHHHH----hhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~----a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++++++|=.|+..| +|..+ ++.|++|++++.++. -++.+...+.
T Consensus 8 ~~~k~vlItGa~g~-iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~i~ 55 (255)
T PRK07523 8 LTGRRALVTGSSQG-IGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLK 55 (255)
T ss_pred CCCCEEEEECCcch-HHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 56789999996544 44433 345889999988752 4444444443
No 331
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=14 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCCceEeechHHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcC--CEEEEEecCC
Q 033085 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN 102 (128)
Q Consensus 45 ~~~G~~~W~~s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~--~~v~~tD~~~ 102 (128)
.++..|+|.=-..+-.|+.+. -..+.|+.||||.=.+..-+...+ .++-..|++-
T Consensus 65 RGy~~R~~aI~~~v~~Fl~~~---~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDf 121 (335)
T KOG2918|consen 65 RGYWARTMAIRHAVRAFLEQT---DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDF 121 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhc---CCceEEEEcCCCccchhhhhhccCCCCcceEEEecC
Confidence 466777888777788888761 144589999999888887666655 3444444443
No 332
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=59.25 E-value=64 Score=24.28 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
.+.|...+... ....+..|||-=+|+|..++.+.+.+.+.++.+.++ +.++.+.+-+..+
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~--~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINP--EYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCH--HHHHHHHHHHHhh
Confidence 34444444443 456788999999999999999999999999999987 5777777766543
No 333
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=59.23 E-value=11 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.5
Q ss_pred cCChHHH------HHhhcCCEEEEEecCCh
Q 033085 80 GTSLPGL------VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 80 GtGl~~l------~~a~~~~~v~~tD~~~~ 103 (128)
|+|--++ .+++.|.+|+++|.++.
T Consensus 12 GvG~TTltAnLA~aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLGESVLAIDLDPQ 41 (243)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEeCCcH
Confidence 5555555 44567889999999983
No 334
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.22 E-value=56 Score=25.59 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHHHhC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N~ 118 (128)
.+++++|=.|++.|+-..+ +++.|++|++++-+. +-++.+...++..+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g 55 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALG 55 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcC
Confidence 3567888888876665443 345678888888765 35555555554433
No 335
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=58.93 E-value=3.7 Score=33.36 Aligned_cols=39 Identities=28% Similarity=0.170 Sum_probs=33.5
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~ 108 (128)
.-.|+.|.|==.|||-+-+.+|..|+.|+++|++.. ++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vr 244 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVR 244 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchh--eee
Confidence 346888999888999998999999999999999983 665
No 336
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=58.87 E-value=13 Score=28.10 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=32.6
Q ss_pred echHHHHHHHHHhccccCC----CCeEEEecccCChHHHHHhhcCC-EEEEEecCC
Q 033085 52 WPCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSN 102 (128)
Q Consensus 52 W~~s~~l~~~i~~~~~~~~----~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~ 102 (128)
-+++.+|.+|+.......+ ..++||+||=+.--. +...+. .|+.+|+++
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns 82 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNS 82 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCC
Confidence 4689999999987533222 259999998633322 223333 699999986
No 337
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.77 E-value=54 Score=25.45 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=26.0
Q ss_pred ccCCCCeEEEeccc-CChHHHH-HhhcCCEEEEEecCC
Q 033085 67 YRFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (128)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l~-~a~~~~~v~~tD~~~ 102 (128)
....+++|+=+|+| .|...+. +...|++|++.|-++
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34578999999998 4444433 334688999999986
No 338
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.43 E-value=72 Score=23.49 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.9
Q ss_pred cCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.++++++|=.|++.|+-.-+ ++..|++|++++-++ +-++.+...+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~ 55 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKGLAAYR 55 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHH
Confidence 44678899999887765443 345688888887765 24444444443
No 339
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.17 E-value=65 Score=24.62 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=26.0
Q ss_pred cCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
.++++++|=.|++.|+-.-+ +++.|++|+++|...
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~ 46 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS 46 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence 45788999999887775543 355688999988754
No 340
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=58.03 E-value=21 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
..+.+||=.|+| .|++.+.+++ .|+ +|+++|.++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 457788888876 5666665565 476 599998765
No 341
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.70 E-value=22 Score=27.94 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
.+.+||=.|+| .|++.+.+++ .|++|++++.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56777778887 6666666665 477888887765
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=57.18 E-value=51 Score=24.51 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.+.. -++.+.+.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~~ 52 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE--NLKKAREKI 52 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 4678889899887775543 3456889999988752 444444433
No 343
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=56.97 E-value=25 Score=30.77 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=29.1
Q ss_pred CeEEEecccC---ChHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGT---SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~Gt---Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++|-=+|+|+ |+..+++.+.|.+|++.|.++ +.++.+...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~--~~l~~~~~~~ 348 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP--QGINNALKYA 348 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHH
Confidence 4688899983 444444446789999999997 4777666554
No 344
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=56.79 E-value=26 Score=27.46 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.8
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|++.+.+++ .|. +|++++.++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 3467888888875 4555554444 476 799998765
No 345
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.55 E-value=14 Score=30.51 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=26.9
Q ss_pred ccCCCCeEEEeccc-CChHH-HHHhhcCCEEEEEecCC
Q 033085 67 YRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~ 102 (128)
..+.+++|+=+|+| +|... .++.+.|++|++.|.+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 34577889999999 77632 25566788999999764
No 346
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=56.26 E-value=21 Score=27.40 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=26.9
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCCE-EEEEecCChHHHHHHHH
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~~-v~~tD~~~~~~~l~~~~ 111 (128)
+++++|=+||| .|++.+.+++ .|++ |+++|.++ +-++.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhh
Confidence 56778888987 7777776665 4775 67777765 3444443
No 347
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.08 E-value=31 Score=25.40 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCChHHHHH
Q 033085 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLK 108 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~~~~l~ 108 (128)
+++++||=+|.| .|.--+ .+.+.|++|++++-+..+++.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~ 48 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL 48 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH
Confidence 478899999988 444433 5567889988888765433433
No 348
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=55.57 E-value=20 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.1
Q ss_pred eEEEeccc---CChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 73 NVVELGAG---TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 73 ~vLELG~G---tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+|+=+|+| .|.++-++++.|..|+++|..+ +.++.++..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~--~~v~aL~~q 43 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQ--ELIDALNKR 43 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCH--HHHHHHhcC
Confidence 68889998 4567888888899999999876 366666443
No 349
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=55.53 E-value=68 Score=22.80 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=25.9
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
+.|+.||||.=-.+.-+......+...|++. |++++.=++.+..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPES 124 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhC
Confidence 3899999997777776665432344444443 45777666666554
No 350
>PRK06194 hypothetical protein; Provisional
Probab=55.06 E-value=74 Score=23.63 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|+++|.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3567888888765554433 344688999999865
No 351
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=54.80 E-value=77 Score=22.73 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCCeEEEecccCChHHHHH----hhcCCEEEEEecCC
Q 033085 70 SGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~----a~~~~~v~~tD~~~ 102 (128)
.++++|=.|++ |.+|..+ ++.|.+|++++-++
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56788888865 4445433 44578899988775
No 352
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=54.76 E-value=28 Score=27.55 Aligned_cols=43 Identities=33% Similarity=0.422 Sum_probs=30.6
Q ss_pred CeEEEeccc---CChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 72 ANVVELGAG---TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 72 ~~vLELG~G---tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
++|-=+|+| .|+...++. .|.+|++.|.++ ++++.++..+..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~--~~~~~~~~~i~~~ 49 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISP--EALERALAYIEKN 49 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCCH--HHHHHHHHHHHHH
Confidence 456677887 455555555 668999999996 5887777766554
No 353
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.66 E-value=18 Score=30.57 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCCCeEEEeccc-CChHHHHH-hhcCCEEEEEecC
Q 033085 69 FSGANVVELGAG-TSLPGLVA-AKVGSNVTLTDDS 101 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~-a~~~~~v~~tD~~ 101 (128)
..+++|+=+|+| .|+..... ++.|.+|+++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 367899999999 66666643 4568899999954
No 354
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.56 E-value=15 Score=30.06 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.7
Q ss_pred CCCeEEEeccc-CChHHH--HHhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l--~~a~~~~~v~~tD~~~ 102 (128)
.+++|+=+|.| +|. ++ ++.+.|.+|+++|.++
T Consensus 13 ~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 13 KNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred cCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCC
Confidence 56789999999 565 55 6677899999999875
No 355
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=54.36 E-value=16 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=26.4
Q ss_pred CeEEEeccc---CChHHHHHhhc--CCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 72 ANVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 72 ~~vLELG~G---tGl~~l~~a~~--~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
...|||||| .|..--.+... .++|+-+|.++. ++..++.-+..|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPv--v~ah~ralL~~~ 118 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPV--VLAHARALLADN 118 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHH--HHHCCHHHHTT-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCch--HHHHHHhhhcCC
Confidence 479999999 45555444333 459999999984 666666655544
No 356
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.32 E-value=76 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=28.8
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+.++++|=.|++.|+-.-+ +++.|.+|++++-+. +.++.+...+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l 84 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE--DLLDAVADRI 84 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHH
Confidence 4668899999876665443 345678999998875 2444444433
No 357
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=54.32 E-value=35 Score=26.09 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=25.5
Q ss_pred eEEEeccc--CChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 73 NVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 73 ~vLELG~G--tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+|.=+|+| -+-++..+++.|.+|++.|.++ +.++.++..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~--~~l~~~~~~ 45 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE--EILKNAMEL 45 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHH
Confidence 56667777 2223345566788999999987 477655443
No 358
>PRK07985 oxidoreductase; Provisional
Probab=54.24 E-value=86 Score=23.81 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecC
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~ 101 (128)
++++++|=.|++.|+-.- .+++.|++|++++..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 577889999977665443 334568888887654
No 359
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=53.58 E-value=32 Score=27.37 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
.+.+||=.|+| .|++.+.+|+ .|++|++++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 56788888886 5666665555 478999988764
No 360
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.09 E-value=40 Score=25.72 Aligned_cols=40 Identities=35% Similarity=0.364 Sum_probs=25.6
Q ss_pred eEEEecccC--ChHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 73 ~vLELG~Gt--Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
+|.=+|+|+ +-++..+++.|.+|++.|.++ +.++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~--~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD--EALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHH
Confidence 466677762 122234456688999999987 4676666553
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=53.01 E-value=46 Score=26.05 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=24.0
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|++.+.+++ .|. +|++++..+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3467788888875 5555554554 477 799998765
No 362
>PRK07791 short chain dehydrogenase; Provisional
Probab=52.93 E-value=90 Score=23.54 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++...
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4678899999888776554 345688888887653
No 363
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=52.93 E-value=87 Score=22.81 Aligned_cols=34 Identities=41% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 4677888888776655443 344577888888764
No 364
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=52.92 E-value=86 Score=22.80 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=28.1
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.++. -++.+...+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~--~~~~~~~~l 53 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAE--RAELAVAKL 53 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHH
Confidence 4678899899776655443 3446789999988752 444443333
No 365
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.87 E-value=33 Score=30.04 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=29.4
Q ss_pred CeEEEecccC---ChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 72 ANVVELGAGT---SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 72 ~~vLELG~Gt---Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++|.=+|+|+ |+...+++..|.+|++.|.++ +.++.+...+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~--~~l~~~~~~~~ 354 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP--QGINHALKYSW 354 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHH
Confidence 4788899984 444433447799999999987 47777655543
No 366
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=52.52 E-value=16 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEecccCCh-HHHHHhhcCCEEEEEecCC
Q 033085 73 NVVELGAGTSL-PGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 73 ~vLELG~GtGl-~~l~~a~~~~~v~~tD~~~ 102 (128)
-||-+|+|.|+ +++.+++.|++|+++|..+
T Consensus 9 DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 9 DVLVAGSGGGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred CEEEECchHHHHHHHHHHHCCCcEEEEecCC
Confidence 47888888555 3345566788888888654
No 367
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.49 E-value=38 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=27.8
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCCh
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~~ 103 (128)
.-+|..+.-.|.| .|+.-+.-++ .|+ +++++|++++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 4467788888888 7777776666 466 8999999984
No 368
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.28 E-value=20 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=19.6
Q ss_pred EEEeccc-CChHH-HHHhhcCCEEEEEecCCh
Q 033085 74 VVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 74 vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~~ 103 (128)
|--+|+| .|+.. ..+|+.|.+|+++|.++.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3345555 44432 256678999999999873
No 369
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.20 E-value=35 Score=29.98 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=28.7
Q ss_pred CeEEEecccCC--hHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~GtG--l~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++|.=+|+|+= -++..++..|.+|++.|.++ +.++.+...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~ 356 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ--KALDLGMTEA 356 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHH
Confidence 47888999852 22335567789999999997 4776655544
No 370
>PRK08589 short chain dehydrogenase; Validated
Probab=52.16 E-value=91 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~ 101 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 4577888888877664432 34467888888876
No 371
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=52.04 E-value=72 Score=23.64 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=28.8
Q ss_pred cCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
..+++++|=.|++.|+-.-+ +++.|.+|++++-+. +..+.+...+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~ 54 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ--EKAEAVVAEI 54 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHH
Confidence 34678888889877664443 345688999998875 2444443333
No 372
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=52.01 E-value=61 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|+..|+-.- .+++.|++|+++|...
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 467888888876665443 2344688888887765
No 373
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=51.90 E-value=19 Score=29.02 Aligned_cols=41 Identities=12% Similarity=-0.063 Sum_probs=31.1
Q ss_pred CeEEEecccCChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+..+|+|.|.|-+.-.+.....+|-+++... |.+++.+...
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~~ 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPYL 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhhh
Confidence 6899999999998887777666788888776 4466555544
No 374
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.86 E-value=25 Score=28.44 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCCh
Q 033085 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~ 103 (128)
.+++|+=+|.| +|..++ ++++.|.+|++.|..+.
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 35678888887 777777 34556889999998764
No 375
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.86 E-value=75 Score=24.84 Aligned_cols=35 Identities=26% Similarity=0.102 Sum_probs=26.4
Q ss_pred cCCCCeEEEecc-c-CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~-G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...+.+||=.|+ | .|.+.+.+++ .|++|++++.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 346789999998 3 7777776666 577999988765
No 376
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=51.83 E-value=55 Score=20.18 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=20.2
Q ss_pred ccCCCCeEEEecccCChHHH--HHhhc-CCEEEEEec
Q 033085 67 YRFSGANVVELGAGTSLPGL--VAAKV-GSNVTLTDD 100 (128)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l--~~a~~-~~~v~~tD~ 100 (128)
..+++++++-+|+|.--.++ .+... +.+|.+.|-
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 44688899999997222222 22333 457777664
No 377
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=51.74 E-value=61 Score=23.42 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++-+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 4678888889876654332 334577888888654
No 378
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.47 E-value=23 Score=28.93 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=25.5
Q ss_pred CCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~ 102 (128)
+++++|+=+|.| +|.... ++.+.|++|++.|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 356789999988 666543 4556789999999765
No 379
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=51.21 E-value=53 Score=23.59 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=20.9
Q ss_pred ccCCCCeEEEeccc-CChHH-HHHhhcCCEEEEEecCC
Q 033085 67 YRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~ 102 (128)
..+.|++++=+|-| +|--- -.+..+|++|+++|.+|
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45689999988877 33221 13345789999999998
No 380
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=51.17 E-value=35 Score=25.79 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=26.3
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCChHHHHHHH
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~~~~~l~~~ 110 (128)
..+.+||-.|+| +|...+.+++ .|.+|++++-++ +..+.+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~--~~~~~~ 205 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE--EKLELA 205 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHH
Confidence 356678888876 4556555555 577899998876 344444
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.15 E-value=43 Score=25.80 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=25.8
Q ss_pred eEEEecccC--ChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 73 ~vLELG~Gt--Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+|-=+|+|+ +-++..+++.|.+|++.|.++ +.++.+...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~--~~~~~~~~~ 47 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE--ELATAGRNR 47 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH--HHHHHHHHH
Confidence 566778872 222234566788999999997 466665444
No 382
>PRK06701 short chain dehydrogenase; Provisional
Probab=51.12 E-value=97 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=23.8
Q ss_pred cCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
.++++++|=.|++.|+-.-+ +++.|.+|++++...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34677888888776664443 344678888887764
No 383
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=51.11 E-value=14 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCeEEEecccCChHHHHHhhc------------C------CEEEEEecCCh
Q 033085 71 GANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNR 103 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~------------~------~~v~~tD~~~~ 103 (128)
--+|+|+||.+|--++.+... + .+|+..|+..+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 348999999999999866431 2 27999998764
No 384
>PRK06720 hypothetical protein; Provisional
Probab=50.92 E-value=86 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=-|++.|+-.-+ +++.|++|+++|.+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 3677888888877764443 345678898888765
No 385
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.33 E-value=62 Score=23.75 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-++ ++.|++|++++.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 46788888888777655433 45677888877654
No 386
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=50.31 E-value=24 Score=29.16 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.0
Q ss_pred cCCCCeEEEeccc-CChHHHH-HhhcCCEEEEEecCCh
Q 033085 68 RFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNR 103 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~-~a~~~~~v~~tD~~~~ 103 (128)
.+.|++|+=+|+| .|..... +...|++|+++|.++.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 3588999999998 4443332 3346889999999873
No 387
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=50.29 E-value=31 Score=27.70 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCCeEEEec-cc-CChHHHHHhhc---CC-EEEEEecCChHHHHHHHHH
Q 033085 69 FSGANVVELG-AG-TSLPGLVAAKV---GS-NVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 69 ~~~~~vLELG-~G-tGl~~l~~a~~---~~-~v~~tD~~~~~~~l~~~~~ 112 (128)
..+.+|+=+| +| .|++.+.+++. |+ +|+++|.++. -++.+++
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~--r~~~a~~ 221 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDE--RLARAQR 221 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHH--HHHHHHH
Confidence 3567888887 45 78888777775 33 7999998863 5555554
No 388
>PRK05854 short chain dehydrogenase; Provisional
Probab=50.21 E-value=1.1e+02 Score=23.38 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
.+++++|=.|++.|+-.-+ +++.|++|++++-+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678888888877765443 345688898888765
No 389
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=50.07 E-value=94 Score=22.34 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
+++++|=.|+..|+-..+ +++.|.+|++++.+.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 467788888665444433 234577888888765
No 390
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=49.58 E-value=77 Score=23.31 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=23.6
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCE-EEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~-v~~tD~~~ 102 (128)
..++.++|=.|+| .|...+.+++ .|.+ |++++.++
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 3467788888876 3555555555 4667 99998876
No 391
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=49.21 E-value=1e+02 Score=22.49 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=26.9
Q ss_pred CCCCeEEEecccCChHHHHHh----hcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a----~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++++++|=.|+. |.+|..++ +.|++|++++-+.. -++.+...+.
T Consensus 10 ~~~k~ilItGa~-g~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~i~ 57 (259)
T PRK08213 10 LSGKTALVTGGS-RGLGLQIAEALGEAGARVVLSARKAE--ELEEAAAHLE 57 (259)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHH
Confidence 467888888854 44455433 35788988887652 4444444333
No 392
>PRK07814 short chain dehydrogenase; Provisional
Probab=48.83 E-value=1.1e+02 Score=22.58 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-+ +++.|++|++++-++. -++.+...+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l 54 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQI 54 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHH
Confidence 4677888888655443332 3346789998888752 444444333
No 393
>PRK08643 acetoin reductase; Validated
Probab=48.61 E-value=1e+02 Score=22.37 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++|=.|+..|+-.-+ +++.|++|++++.+. +.++.+...+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~ 46 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE--ETAQAAADKL 46 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHH
Confidence 45667677665544432 334577888887765 2444444333
No 394
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.59 E-value=61 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCCCeEEEeccc-CChHHHHH----hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVA----AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~----a~~~~~v~~tD~~~ 102 (128)
++++++|=.|+| ++-+|..+ ++.|++|++++.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 467889999984 34444433 44688999988654
No 395
>PRK08303 short chain dehydrogenase; Provisional
Probab=48.37 E-value=1.1e+02 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~ 101 (128)
++++++|=.|++.|+-.-. +++.|++|++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 5688999999888765443 34568899998875
No 396
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=48.09 E-value=35 Score=23.94 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCCeEEEeccc-CChHHHHH-hhcCCEEEEEecCChHHHHHHHH
Q 033085 70 SGANVVELGAG-TSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~-a~~~~~v~~tD~~~~~~~l~~~~ 111 (128)
+..+|+=+|.| .|.-+..+ ..+|++|+..|..+ +.++...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~--~~~~~~~ 60 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP--ERLRQLE 60 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH--HHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH--HHHHhhh
Confidence 45689999988 56666544 35799999999986 2444443
No 397
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=47.97 E-value=1.4e+02 Score=23.78 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=49.7
Q ss_pred eechHHHHHHHHH--hccccCCCCeEEEecccCChHH---HHHhhcCCEEEEE---ecCChHHHHHHHHHHHHHhCCC
Q 033085 51 VWPCSVILAEYVW--QQRYRFSGANVVELGAGTSLPG---LVAAKVGSNVTLT---DDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 51 ~W~~s~~l~~~i~--~~~~~~~~~~vLELG~GtGl~~---l~~a~~~~~v~~t---D~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.|...++||+++- ++...++++++.=+|-|.-++- +.+++.|.+|... .+.+.+++++.++++++.+|-+
T Consensus 131 ~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~ 208 (310)
T COG0078 131 EFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGK 208 (310)
T ss_pred ccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCe
Confidence 4455899999853 4555589999999999933221 2446678765543 5666778999999999998743
No 398
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.73 E-value=52 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=31.2
Q ss_pred HHHHHHHhccccCCCCeEEEeccc--CChH-HHHHhhcCCEEEEEecCC
Q 033085 57 ILAEYVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 57 ~l~~~i~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~~~~v~~tD~~~ 102 (128)
-+.+.+......++|++|+=+|+| .|.+ +.++.+.|++|++.+-..
T Consensus 145 gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 145 GIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 334444444456799999999999 4554 334556788988888743
No 399
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.47 E-value=1e+02 Score=22.08 Aligned_cols=40 Identities=38% Similarity=0.453 Sum_probs=26.9
Q ss_pred CCCCeEEEecccC-ChHHHHHhh-cCCEEEEEecCChHHHHHHH
Q 033085 69 FSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (128)
Q Consensus 69 ~~~~~vLELG~Gt-Gl~~l~~a~-~~~~v~~tD~~~~~~~l~~~ 110 (128)
.++.+||-.|+|+ |...+.+++ .|.+|++++.++. ..+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~--~~~~~ 174 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE--KLELA 174 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH--HHHHH
Confidence 4678999999986 444443444 5779999988752 44444
No 400
>PRK06398 aldose dehydrogenase; Validated
Probab=46.92 E-value=47 Score=24.53 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=19.5
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEe
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTD 99 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD 99 (128)
++++++|=.|+..|+-.- .+++.|++|++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 467889999977666443 3344566666544
No 401
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.82 E-value=98 Score=22.10 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 70 SGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
++++||=.|++.|+-..++ ++.|++|++++-++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5678999998755544433 34578899998875
No 402
>PLN02827 Alcohol dehydrogenase-like
Probab=46.36 E-value=45 Score=26.44 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=23.6
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|++.+.+++ .|. .|+++|.++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 4468889988876 5555554554 476 588888665
No 403
>PRK07109 short chain dehydrogenase; Provisional
Probab=46.27 E-value=1.3e+02 Score=23.52 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+++++|=.|++.|+-.-+ +++.|++|++++-++ +-++.+...+.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~ 53 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIR 53 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHH
Confidence 4567788888766655443 345678888888765 34444444443
No 404
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.03 E-value=58 Score=24.85 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=25.4
Q ss_pred CeEEEecccC--ChHHHHHhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 72 ~~vLELG~Gt--Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++|.=+|+|+ .-++..+++.|.+|++.|.++ +.++.+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i 47 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA--DRLEAGLATI 47 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHH
Confidence 3566677762 222334556788999999987 4666554433
No 405
>PRK06128 oxidoreductase; Provisional
Probab=45.98 E-value=1.3e+02 Score=22.77 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
.+++++|=.|+..|+-.-+ +++.|++|+++....
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 4678999999766664443 334588888876543
No 406
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=45.94 E-value=1.2e+02 Score=22.18 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
..++++|=.|+.+|+-.-++ ++.|++|++++...
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~ 45 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46789999997777655543 34577888887664
No 407
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.80 E-value=35 Score=26.73 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHhccccCCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecC
Q 033085 61 YVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDS 101 (128)
Q Consensus 61 ~i~~~~~~~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~ 101 (128)
|++..+..-.+++|+=+|+| .|+... .+++.|.+|++.|-.
T Consensus 8 ~~~~~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 8 FMCKEKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred hhcccCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 33444444567899999999 333322 345567788888764
No 408
>PRK07677 short chain dehydrogenase; Provisional
Probab=45.72 E-value=1.2e+02 Score=22.13 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=18.1
Q ss_pred CeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 72 ANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
+++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5666677665544332 234566777777654
No 409
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=45.55 E-value=74 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=40.5
Q ss_pred CCCeEEEecccCChHHHHHhh-cCC--EEEEEecCChHHHHHHHHHHHHHhCCCCceE
Q 033085 70 SGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVN 124 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~ 124 (128)
.|.||||+.|.-|-=...+|. ... -|++.|.+.. -+..++.|+.+.|+...+.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~rlGv~ntiv 296 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLHRLGVTNTIV 296 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHHHhCCCceEE
Confidence 688999999996655444443 333 5999999984 8999999999999875553
No 410
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.55 E-value=1.1e+02 Score=22.05 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=25.0
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
+.++++|=.|++.|+-.-+ +++.|++|++++.+.. -++.+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~ 51 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVE--RLKELRA 51 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHH
Confidence 4677888888554443332 2345778888887652 4444433
No 411
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.01 E-value=1.1e+02 Score=21.85 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-..++ ++.|.+|++++.++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678888887655544432 34577888888775
No 412
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.76 E-value=1.2e+02 Score=22.10 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=24.8
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-++ ++.|++|++++.+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46788999998877665543 45688888887764
No 413
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=44.64 E-value=1e+02 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=23.4
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...+.+||=.|+| .|.+.+.+++ .|.+|++++.++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 3457788888864 4444444454 477899998875
No 414
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.57 E-value=1.1e+02 Score=22.36 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.++ +.++.+...+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l 51 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA--DALEALAADL 51 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHH
Confidence 4678899999876654433 345688999999775 3444444444
No 415
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=44.40 E-value=56 Score=26.25 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCeEEEeccc-CChHHHHHh-hcCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a-~~~~~v~~tD~~~ 102 (128)
...+|+=+|+| .|...+..+ .+|++|++.|.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45678889887 555555443 3588999999876
No 416
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=44.36 E-value=65 Score=25.07 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=29.1
Q ss_pred EEEeccc--CChHHHHHhhcCCEEEEEecCChHHHHHHHHHHHHH
Q 033085 74 VVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 74 vLELG~G--tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
|-=.|+| .+-.+++.|..|.+|.+-|+.+. .+..|.+|+..
T Consensus 6 i~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~--Ql~~ALen~~K 48 (313)
T KOG2305|consen 6 IAIVGSGLVGSSWAMLFASSGYQVQLYDILEK--QLQTALENVEK 48 (313)
T ss_pred eeEeecccccchHHHHHhccCceEEEeeccHH--HHHHHHHHHHH
Confidence 3334555 45566777888999999999974 77777777653
No 417
>PRK06057 short chain dehydrogenase; Provisional
Probab=44.24 E-value=84 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
+++++||=.|+..|+-.-+ +++.|++|++++.++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4678899999876664443 334678899988875
No 418
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.05 E-value=1.1e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=24.6
Q ss_pred cCCCCeEEEecccCC-hHHH----HHhhcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTS-LPGL----VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtG-l~~l----~~a~~~~~v~~tD~~~ 102 (128)
.++++++|=.|+++| -+|. .+++.|++|++++.+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 457889999998752 3333 3445688999988775
No 419
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.04 E-value=49 Score=26.88 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCCh
Q 033085 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~ 103 (128)
.+++|+=+|.| +|.... ++++.|.+|++.|..+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46678888877 444332 44557889999998764
No 420
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.96 E-value=48 Score=19.97 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=25.7
Q ss_pred cCChHHHH----HhhcCCEEEEEecCCh------HHHHHHHHHHHHHhCCC
Q 033085 80 GTSLPGLV----AAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 80 GtGl~~l~----~a~~~~~v~~tD~~~~------~~~l~~~~~n~~~N~l~ 120 (128)
|.|..|+- ++..+.+|++.+..+. +++.+.+++.++.++++
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 55566663 3456889999987763 23455566666666554
No 421
>PRK06914 short chain dehydrogenase; Provisional
Probab=43.84 E-value=1.3e+02 Score=22.19 Aligned_cols=42 Identities=24% Similarity=0.136 Sum_probs=24.4
Q ss_pred CCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~ 114 (128)
++++|=.|+..|+-.-+ +++.|++|++++-++ +-++.+...+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~ 47 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP--EKQENLLSQA 47 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH--HHHHHHHHHH
Confidence 45677778665554443 244577888887665 2444443333
No 422
>PRK07904 short chain dehydrogenase; Provisional
Probab=43.77 E-value=1.3e+02 Score=22.16 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=28.7
Q ss_pred CCCeEEEecccCChHHHHH---hhcC-CEEEEEecCChHHHHHHHHHHHHH
Q 033085 70 SGANVVELGAGTSLPGLVA---AKVG-SNVTLTDDSNRIEVLKNMRRVCEM 116 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~---a~~~-~~v~~tD~~~~~~~l~~~~~n~~~ 116 (128)
.+++||=.|+..|+-.-++ ++.| .+|++++-++. ..++.+.+.+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~-~~~~~~~~~l~~ 56 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD-PRRDAAVAQMKA 56 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc-hhHHHHHHHHHh
Confidence 4568999998776655544 3454 79999988763 224444444444
No 423
>PRK07890 short chain dehydrogenase; Provisional
Probab=43.71 E-value=1.2e+02 Score=21.88 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
+++++|=.|++.|+-.-+ +++.|.+|++++.++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567888888766655443 344678899888765
No 424
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=43.43 E-value=50 Score=25.50 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCCE-EEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~~-v~~tD~~~ 102 (128)
..+.+||=+|+| .|++.+.+++ .|++ |++++.++
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 357788888876 5555555555 5775 78888765
No 425
>PRK07062 short chain dehydrogenase; Provisional
Probab=43.00 E-value=1.3e+02 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCCeEEEecccCChHHHHH---hhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~~~~v~~tD~~~ 102 (128)
.+++++|=.|++.|+-.-++ ++.|++|++++-++
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46788888888776655433 34577888888765
No 426
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.67 E-value=64 Score=24.60 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=24.4
Q ss_pred eEEEeccc--CChHHHHHhhcCCEEEEEecCChHHHHHHHHHH
Q 033085 73 NVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (128)
Q Consensus 73 ~vLELG~G--tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~n 113 (128)
+|.=+|+| -+-++..+++.|.+|++.|.++ +.++.+...
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~--~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ--EQLESAQQE 43 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH--HHHHHHHHH
Confidence 45566665 1122334456688999999987 477666543
No 427
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=42.63 E-value=96 Score=23.55 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=24.5
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh--cCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK--VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~--~~~~v~~tD~~~ 102 (128)
...+.+||=.|+| .|.+.+.+++ .|.+|++++-++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~ 197 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDIND 197 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 3457788888865 5555555666 388999997765
No 428
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.33 E-value=99 Score=24.98 Aligned_cols=32 Identities=41% Similarity=0.734 Sum_probs=24.1
Q ss_pred CCCCeEEEecccCChHHHH----HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~----~a~~~~~v~~tD~~~ 102 (128)
.++++|+=+|+|. .|+. +++.|++|+++|.+.
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578899999885 4443 445799999999986
No 429
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=42.33 E-value=1.2e+02 Score=23.47 Aligned_cols=33 Identities=42% Similarity=0.560 Sum_probs=21.6
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
.+.+||=.|+| .|.+.+.+++ .|. +|++++-++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 67778888865 4444444444 577 899887654
No 430
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.11 E-value=98 Score=20.85 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=24.8
Q ss_pred cCCCCeEEEeccc-CChHHH-HHhhcCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l-~~a~~~~-~v~~tD~~~ 102 (128)
.++++++|=+|+| +|-..+ .++..|. +|+++.-+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5689999999998 333332 4455677 699988875
No 431
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.07 E-value=60 Score=26.91 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCeEEEeccc-CChHH-HHHhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~ 102 (128)
++++|+=+|.| +|+.. .++.+.|.+|++.|...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 46778889888 66542 24556789999999865
No 432
>PRK06138 short chain dehydrogenase; Provisional
Probab=42.06 E-value=1.3e+02 Score=21.63 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.||..|+-.-+ +++.|++|++++-+.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 3567888888865555443 344577888888765
No 433
>PRK05650 short chain dehydrogenase; Provisional
Probab=41.87 E-value=1.4e+02 Score=21.98 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=17.7
Q ss_pred eEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 73 NVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 73 ~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++|=.|+..|+-.-+ +++.|.+|++++.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~ 34 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNE 34 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 466667655543332 334577888887665
No 434
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=41.80 E-value=96 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++-++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678899999877664432 345688898888765
No 435
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=41.66 E-value=31 Score=23.15 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCeEEEeccc-CCh-HHHHHhhcCC-EEEEEecCC
Q 033085 71 GANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (128)
Q Consensus 71 ~~~vLELG~G-tGl-~~l~~a~~~~-~v~~tD~~~ 102 (128)
.++|+=+||| .|. +...+++.|. ++++.|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4588899998 443 3346677787 899999875
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=41.59 E-value=35 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=16.9
Q ss_pred HhhcCCEEEEEecCChHHHHHHHHHHHHHh
Q 033085 88 AAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (128)
Q Consensus 88 ~a~~~~~v~~tD~~~~~~~l~~~~~n~~~N 117 (128)
++..|.+|.++|-+|.. -+..=++|...+
T Consensus 26 la~~G~~V~lIDaDpn~-pl~~W~~~a~~~ 54 (231)
T PF07015_consen 26 LAARGARVALIDADPNQ-PLAKWAENAQRP 54 (231)
T ss_pred HHHCCCeEEEEeCCCCC-cHHHHHHhcccc
Confidence 34567788888888763 343334444333
No 437
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=41.37 E-value=91 Score=24.17 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=32.4
Q ss_pred ccccCCCCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHHH
Q 033085 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 65 ~~~~~~~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
+...+....|+|+|-|.|-+.-.+...+. +..+++.+.. .+.-++....
T Consensus 45 ~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R--Fip~LQ~L~E 94 (326)
T KOG0821|consen 45 KAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR--FIPGLQMLSE 94 (326)
T ss_pred hccccccceeEEecCCCCchhHHHHhcchhheeeeeeccc--cChHHHHHhh
Confidence 34455667899999999988877777765 5566665542 5544444443
No 438
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=41.31 E-value=50 Score=27.57 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=28.8
Q ss_pred CCCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCChH
Q 033085 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRI 104 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~~ 104 (128)
+.+++|+=+|=| ||+... ++.+.|++|++.|..+.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 347889999988 887666 566779999999988753
No 439
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=41.29 E-value=1.3e+02 Score=22.94 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
++.+||-.|+| .|...+.+++ .|. +|++++.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~ 200 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 67788888876 2445544444 577 799998765
No 440
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.26 E-value=69 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=22.4
Q ss_pred eEEEeccc--CChHHHHHhhcCCEEEEEecCChHHHHHHHH
Q 033085 73 NVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 73 ~vLELG~G--tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~ 111 (128)
+|-=+|+| -+-++..+++.|.+|++.|.++. .++.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~--~~~~~~ 43 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA--AVDRGL 43 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH--HHHHHH
Confidence 45556665 22233345566789999999873 665433
No 441
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=1.5e+02 Score=23.37 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccccCCCCeEEEecccCChHHHH----HhhcCC--EEEEEecCChHHHHHHHHHHHH
Q 033085 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLV----AAKVGS--NVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 55 s~~l~~~i~~~~~~~~~~~vLELG~GtGl~~l~----~a~~~~--~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
+.+|..+..+-.........+|||+|+.-=.-. ++..+. +.+-+|++.. +++....-+.
T Consensus 63 aaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~--iL~~ta~ai~ 127 (321)
T COG4301 63 AAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSAS--ILRATATAIL 127 (321)
T ss_pred HHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHH--HHHHHHHHHH
Confidence 344444443333344567899999996544433 334444 7899999874 6655444443
No 442
>PRK07236 hypothetical protein; Provisional
Probab=41.00 E-value=37 Score=26.79 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CeEEEeccc-CChH-HHHHhhcCCEEEEEecCC
Q 033085 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 72 ~~vLELG~G-tGl~-~l~~a~~~~~v~~tD~~~ 102 (128)
.+|+=+|+| .|+. ++.+++.|.+|++.|..+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 578889998 4543 345667788999998765
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=40.86 E-value=64 Score=28.43 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred CeEEEecccCChHHH--HHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGL--VAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 72 ~~vLELG~GtGl~~l--~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++|-=+|+|+=-.+| .++..|.+|++.|.++ +.++.++..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~~ 357 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ--HSLDLGLTEAA 357 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHH
Confidence 367888888433333 4556788999999997 47776665543
No 444
>PRK08703 short chain dehydrogenase; Provisional
Probab=40.84 E-value=1.4e+02 Score=21.51 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|.+|++++-++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4677899999654443332 234577899998876
No 445
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=40.64 E-value=29 Score=28.33 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.5
Q ss_pred cCChHHH--HHhhcCCEEEEEecCCh
Q 033085 80 GTSLPGL--VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 80 GtGl~~l--~~a~~~~~v~~tD~~~~ 103 (128)
|+|+.++ ++.+.|..|+++|..+.
T Consensus 9 G~gm~~la~~l~~~G~~V~~~D~~~~ 34 (448)
T TIGR01081 9 GTFMGGLAMIAKQLGHEVTGSDANVY 34 (448)
T ss_pred HHhHHHHHHHHHhCCCEEEEECCCCC
Confidence 4666666 66778999999998763
No 446
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.37 E-value=83 Score=24.93 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=24.3
Q ss_pred CeEEEecccC--ChHHHHHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 72 ~~vLELG~Gt--Gl~~l~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
++|-=+|+|+ .-++..++..|.+|++.|.++ +.++.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~--~~~~~~~~ 48 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP--GAEAALRA 48 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHH
Confidence 3566777762 112223456789999999987 35555444
No 447
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=40.11 E-value=1.9e+02 Score=23.05 Aligned_cols=69 Identities=14% Similarity=-0.053 Sum_probs=42.4
Q ss_pred echHHHHHHHH--HhccccC-CCCeEEEecccCC---------hHHHHHhhcCCEEEEEec----CChHHHHHHHHHHHH
Q 033085 52 WPCSVILAEYV--WQQRYRF-SGANVVELGAGTS---------LPGLVAAKVGSNVTLTDD----SNRIEVLKNMRRVCE 115 (128)
Q Consensus 52 W~~s~~l~~~i--~~~~~~~-~~~~vLELG~GtG---------l~~l~~a~~~~~v~~tD~----~~~~~~l~~~~~n~~ 115 (128)
...++.|++++ .++...+ +|.+|.=.+.|-| -+..++++.|.+|++.-- .+.++.++.++.+++
T Consensus 147 ~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 226 (335)
T PRK04523 147 THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAA 226 (335)
T ss_pred CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHH
Confidence 55678888854 3343446 6877755555544 222355677887655543 343467888888887
Q ss_pred HhCCC
Q 033085 116 MNKLN 120 (128)
Q Consensus 116 ~N~l~ 120 (128)
.++.+
T Consensus 227 ~~g~~ 231 (335)
T PRK04523 227 ESGGS 231 (335)
T ss_pred HcCCe
Confidence 77743
No 448
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=39.99 E-value=78 Score=24.44 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=23.4
Q ss_pred eEEEecccCChHHH----HHhhcCCEEEEEecCChHHHHHHHHH
Q 033085 73 NVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRR 112 (128)
Q Consensus 73 ~vLELG~GtGl~~l----~~a~~~~~v~~tD~~~~~~~l~~~~~ 112 (128)
+|.=+|+| ++|. .+++.|.+|++.|.++ +.++.+..
T Consensus 4 ~V~VIG~G--~mG~~iA~~la~~G~~V~v~d~~~--~~~~~~~~ 43 (308)
T PRK06129 4 SVAIIGAG--LIGRAWAIVFARAGHEVRLWDADP--AAAAAAPA 43 (308)
T ss_pred EEEEECcc--HHHHHHHHHHHHCCCeeEEEeCCH--HHHHHHHH
Confidence 46667755 4443 4456688999999987 35555443
No 449
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=39.91 E-value=35 Score=24.98 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=25.3
Q ss_pred cCCCCeEEEeccc-CC-hHHHHHhhcCC-EEEEEecC
Q 033085 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (128)
Q Consensus 68 ~~~~~~vLELG~G-tG-l~~l~~a~~~~-~v~~tD~~ 101 (128)
.++..+|+=+||| .| -++..+++.|. ++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4467789999998 23 24446677787 79999998
No 450
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=39.51 E-value=36 Score=27.46 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEeccc-CChHHH--HHhhcCCEEEEEecCCh
Q 033085 74 VVELGAG-TSLPGL--VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 74 vLELG~G-tGl~~l--~~a~~~~~v~~tD~~~~ 103 (128)
++=+|.| +|. ++ ++.+.|.+|+++|..+.
T Consensus 2 ~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 2 ILILGLGKTGR-AVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred EEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCC
Confidence 3445655 777 54 45667899999998763
No 451
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.50 E-value=1.4e+02 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCCeEEEecccC--ChH---HHHHhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGT--SLP---GLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~Gt--Gl~---~l~~a~~~~~v~~tD~~~ 102 (128)
++++++|=-|++. |+- +..+++.|++|++++.+.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence 4678888889876 542 234566788998887653
No 452
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.40 E-value=1.4e+02 Score=21.35 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|+..|+-.-+ +++.|.+|++++-++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4567888888765554433 344688999999886
No 453
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=39.14 E-value=35 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=20.2
Q ss_pred CeEEEeccc-CChHHHHH-hhcCCEEEEEecCC
Q 033085 72 ANVVELGAG-TSLPGLVA-AKVGSNVTLTDDSN 102 (128)
Q Consensus 72 ~~vLELG~G-tGl~~l~~-a~~~~~v~~tD~~~ 102 (128)
|+|+=+|+| +||.++-. ...|..+++.|.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 578899999 78877744 34677888888765
No 454
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.07 E-value=29 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=14.0
Q ss_pred hHHHHHhhcCCEEEEEecCCh
Q 033085 83 LPGLVAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 83 l~~l~~a~~~~~v~~tD~~~~ 103 (128)
.++..+++.|.+|.++|.++.
T Consensus 20 nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 20 NLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred HHHHHHHhCCCeEEEEEcCCC
Confidence 344455667778888888763
No 455
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=38.98 E-value=35 Score=27.83 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=23.0
Q ss_pred cCCCCeEEEeccc--CChHHHHHhhcCCEEEEEe
Q 033085 68 RFSGANVVELGAG--TSLPGLVAAKVGSNVTLTD 99 (128)
Q Consensus 68 ~~~~~~vLELG~G--tGl~~l~~a~~~~~v~~tD 99 (128)
.+.|.+|||++.. .-+++.+++.+|+.||=++
T Consensus 11 pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE 44 (405)
T PRK03525 11 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIE 44 (405)
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHcCCcEEEEC
Confidence 4578888888766 2456667777888777776
No 456
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.95 E-value=60 Score=26.39 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=24.6
Q ss_pred CC-CeEEEeccc-CChHHHHHhh-c-C-CEEEEEecCCh
Q 033085 70 SG-ANVVELGAG-TSLPGLVAAK-V-G-SNVTLTDDSNR 103 (128)
Q Consensus 70 ~~-~~vLELG~G-tGl~~l~~a~-~-~-~~v~~tD~~~~ 103 (128)
++ ++|+=+|.| +|..++.... . + .+|++.|..+.
T Consensus 5 ~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~ 43 (438)
T PRK04663 5 QGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET 43 (438)
T ss_pred cCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 44 678888888 8888874443 3 3 78999998763
No 457
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.64 E-value=36 Score=29.01 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEecccCChH-HHHHhhcCCEEEEEecC
Q 033085 73 NVVELGAGTSLP-GLVAAKVGSNVTLTDDS 101 (128)
Q Consensus 73 ~vLELG~GtGl~-~l~~a~~~~~v~~tD~~ 101 (128)
-|+=+|+|.|+. ++.+++.|.+|++++..
T Consensus 18 DvvvvG~G~G~~aA~~a~~~G~~v~v~Ek~ 47 (564)
T PRK12845 18 DLLVVGSGTGMAAALAAHELGLSVLIVEKS 47 (564)
T ss_pred CEEEECCcHHHHHHHHHHHCCCcEEEEecC
Confidence 466788886653 34556677788777764
No 458
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=38.63 E-value=43 Score=26.58 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCCeEEEecccCChHHHHHhhc-C-CEEEEEecCChHHHHHHHHHHHHHhCCCCceEe
Q 033085 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVNY 125 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-~-~~v~~tD~~~~~~~l~~~~~n~~~N~l~~~v~~ 125 (128)
.+..+||.--|.|--+..+.+. . .++++.|.++ ++++.+++++... .+++..
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~--~a~~~a~~~l~~~--~~r~~~ 73 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDP--EALERAKERLKKF--DDRFIF 73 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-H--HHHHHHHCCTCCC--CTTEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCH--HHHHHHHHHHhhc--cceEEE
Confidence 5668999999988777766654 3 5899999997 5888887655432 444443
No 459
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=38.60 E-value=51 Score=27.13 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=25.6
Q ss_pred cccCCCCeEEEecccCChHHH--HHhhcCCEEEEEecCC
Q 033085 66 RYRFSGANVVELGAGTSLPGL--VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l--~~a~~~~~v~~tD~~~ 102 (128)
...++||+|+-+|+|.=-+-+ .+++.+++|++.=-++
T Consensus 170 ~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 170 PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 456799999999999444333 4556667787765554
No 460
>PRK10037 cell division protein; Provisional
Probab=38.52 E-value=27 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=15.7
Q ss_pred hHHHHHhhcCCEEEEEecCC
Q 033085 83 LPGLVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 83 l~~l~~a~~~~~v~~tD~~~ 102 (128)
.++..+++.|.+|.++|.++
T Consensus 21 nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 21 ALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred HHHHHHHhcCCcEEEEeCCh
Confidence 34456677888999999987
No 461
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=38.45 E-value=88 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=34.4
Q ss_pred CeEEEecccCChHHHHHhhcCCE-EEEEecCChHHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~~~~-v~~tD~~~~~~~l~~~~~n~~ 115 (128)
.+++||=||.|-+.+.+...|.+ +.+.|+++ ..++.-+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCC
Confidence 47999999999999999999974 88899987 37666666654
No 462
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=38.23 E-value=83 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.131 Sum_probs=25.1
Q ss_pred cCCCCeEEEecc-c-CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~-G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...+.+||=.|+ | .|.+.+.+++ .|++|++++-++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 346788988885 3 6777776666 477899888765
No 463
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.15 E-value=86 Score=25.42 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=27.2
Q ss_pred CCCeEEEeccc-CChHHHHHhhc-CCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~~-~~~v~~tD~~~ 102 (128)
.|+++-=.|.| .|-+++..||. |.+|+++|-..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 78888778876 88899988874 78999999884
No 464
>PRK05872 short chain dehydrogenase; Provisional
Probab=38.14 E-value=1.3e+02 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=23.8
Q ss_pred cCCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
.++++++|=.|++.|+-..+ +++.|++|++++.+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE 43 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678888888776654443 344677888888765
No 465
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=38.06 E-value=68 Score=28.33 Aligned_cols=35 Identities=23% Similarity=0.004 Sum_probs=27.3
Q ss_pred cCCCCeEEEecccCChHHHHHhhc---CCEEEEEecCC
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~---~~~v~~tD~~~ 102 (128)
.-++..||||||..|-..=.+++. |.-|+++|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 446789999999998887766663 44699999876
No 466
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=37.98 E-value=74 Score=24.11 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=21.1
Q ss_pred eEEEeccc-CChHH-HHHhhcCCEEEEEecCC
Q 033085 73 NVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 73 ~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~ 102 (128)
.|+=+|+| .|+.+ +.+++.|.+|++.|...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 47778888 55543 35567788999999764
No 467
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.82 E-value=55 Score=20.29 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=30.0
Q ss_pred CCCeEEEeccc--CChHHHHHhhcC-CEEEEEecCChHHHHHHHHHHHHHhCC
Q 033085 70 SGANVVELGAG--TSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (128)
Q Consensus 70 ~~~~vLELG~G--tGl~~l~~a~~~-~~v~~tD~~~~~~~l~~~~~n~~~N~l 119 (128)
...-|||.||= +|+++--+..+- ..|+.-+-.. ++++++-.-++.|-+
T Consensus 27 p~lDvlEYgCLt~Cg~Ca~~lfALVnGevV~Get~e--eLv~NIY~~i~Enp~ 77 (78)
T COG4844 27 PNLDVLEYGCLTHCGICAASLFALVNGEVVEGETPE--ELVENIYTFIEENPM 77 (78)
T ss_pred CCccchhhhhHhhhhhHHHhHHHHhcCceecCCCHH--HHHHHHHHHHhccCC
Confidence 34579999986 566655333332 2454444443 688888888877754
No 468
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=37.73 E-value=1.9e+02 Score=22.26 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHhccccCCCCeEEEecccCChHHHH---HhhcCC-EEEEEecCC
Q 033085 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV---AAKVGS-NVTLTDDSN 102 (128)
Q Consensus 58 l~~~i~~~~~~~~~~~vLELG~GtGl~~l~---~a~~~~-~v~~tD~~~ 102 (128)
+...+.......+++++|=+|+| |..--. +++.|+ +|++.+-+.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344333234578899999998 544332 345677 599998874
No 469
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.71 E-value=1.1e+02 Score=22.82 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=27.3
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecCCh
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~~ 103 (128)
..|++||--|+|.|+--- .+++.|++|++.--++.
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a 42 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA 42 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH
Confidence 468889999999887543 56778999999888763
No 470
>PRK07454 short chain dehydrogenase; Provisional
Probab=37.71 E-value=1.5e+02 Score=21.21 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=21.1
Q ss_pred CCCeEEEecccCChHHHHH----hhcCCEEEEEecCC
Q 033085 70 SGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~----a~~~~~v~~tD~~~ 102 (128)
+++++|=.|+ +|.+|..+ ++.|.+|++++.++
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3467888885 45555443 34577899988775
No 471
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=37.54 E-value=44 Score=26.40 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=13.3
Q ss_pred CCCeEEEecccCChHHH
Q 033085 70 SGANVVELGAGTSLPGL 86 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l 86 (128)
....|-|+|||-+-++.
T Consensus 180 ~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS 196 (325)
T ss_pred CceEEEecccchhhhhh
Confidence 34589999999887764
No 472
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=37.46 E-value=1.5e+02 Score=23.02 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCCeEEEeccc-CChHHHHHh-hcCC-EEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAA-KVGS-NVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a-~~~~-~v~~tD~~~ 102 (128)
..+++|+=+|+| .|...+..+ ..+. +|++++.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578899999986 454433332 2354 799999876
No 473
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.44 E-value=1.9e+02 Score=22.35 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCCeEEEecccCChHHHH---HhhcCCEEEEEecCChHHHHHHHHHHH-HHhCCCCceEeec
Q 033085 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRVNYRN 127 (128)
Q Consensus 70 ~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~~~~~l~~~~~n~-~~N~l~~~v~~~~ 127 (128)
.++++|==|+-+|+---+ +|+.|.+++++--+.. -++.+++.+ ...++...+...|
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~--kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARRED--KLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH--HHHHHHHHHHHhhCceEEEEECc
Confidence 567888889888886554 4566788888888763 555555554 4455665555554
No 474
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.22 E-value=62 Score=19.19 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=9.3
Q ss_pred hhcCCEEEEEecCC
Q 033085 89 AKVGSNVTLTDDSN 102 (128)
Q Consensus 89 a~~~~~v~~tD~~~ 102 (128)
++.+.+|++.|..+
T Consensus 16 ~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 16 AKAGYRVTVFEKND 29 (68)
T ss_dssp HHTTSEEEEEESSS
T ss_pred HHCCCcEEEEecCc
Confidence 34566788777665
No 475
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=36.79 E-value=76 Score=28.09 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=28.7
Q ss_pred CeEEEecccCChH--HHHHhhcCCEEEEEecCChHHHHHHHHHHHH
Q 033085 72 ANVVELGAGTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (128)
Q Consensus 72 ~~vLELG~GtGl~--~l~~a~~~~~v~~tD~~~~~~~l~~~~~n~~ 115 (128)
++|-=+|+|+=-. +..++..|.+|++.|.++ +.++.+...+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~i~ 379 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP--AGLDRGQQQVF 379 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH--HHHHHHHHHHH
Confidence 4688889984222 224556789999999997 47777665553
No 476
>PRK09273 hypothetical protein; Provisional
Probab=36.77 E-value=49 Score=24.86 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=18.0
Q ss_pred EEEecccCChHHHHHhhcCCEEEEE
Q 033085 74 VVELGAGTSLPGLVAAKVGSNVTLT 98 (128)
Q Consensus 74 vLELG~GtGl~~l~~a~~~~~v~~t 98 (128)
.-=++||||+-..+++.+-..|.+-
T Consensus 66 ~GIliCGTGiG~siAANK~pGIraa 90 (211)
T PRK09273 66 FVVTGCGTGQGAMLALNSFPGVVCG 90 (211)
T ss_pred EEEEEcCcHHHHHHHHhcCCCeEEE
Confidence 3458999999888888876544433
No 477
>PRK10458 DNA cytosine methylase; Provisional
Probab=36.68 E-value=83 Score=26.38 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCeEEEecccCChHHHHHhhcCC-EEEEEecCChHHHHHHHHHHH
Q 033085 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (128)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~~~-~v~~tD~~~~~~~l~~~~~n~ 114 (128)
.-+++||=||.|-+++.+-..|. .|.+.|.++ .+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 45999999999999999888887 478889987 3666666653
No 478
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=36.63 E-value=82 Score=24.62 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCCeEEEeccc-CChHHHHHhh-cCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
.+.++|=.|+| .|++.+.+++ .|.+|++++..+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~ 214 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD 214 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 57788888776 5666555555 467888887665
No 479
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=36.54 E-value=86 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEec
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDD 100 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~ 100 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~ 41 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADI 41 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4677888888777765543 3445667666544
No 480
>PRK07121 hypothetical protein; Validated
Probab=36.46 E-value=43 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=16.9
Q ss_pred eEEEeccc-CChHH-HHHhhcCCEEEEEecCC
Q 033085 73 NVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (128)
Q Consensus 73 ~vLELG~G-tGl~~-l~~a~~~~~v~~tD~~~ 102 (128)
-||=+|+| .|+.+ +.+++.|++|++++...
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36666666 34433 34455667777766543
No 481
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.45 E-value=1.3e+02 Score=22.04 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3567888888766654433 344678888888765
No 482
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=36.41 E-value=20 Score=18.35 Aligned_cols=9 Identities=56% Similarity=1.014 Sum_probs=6.2
Q ss_pred cccCChHHH
Q 033085 78 GAGTSLPGL 86 (128)
Q Consensus 78 G~GtGl~~l 86 (128)
|+|+|++-+
T Consensus 14 GSGSGlplL 22 (29)
T PF08515_consen 14 GSGSGLPLL 22 (29)
T ss_dssp TSSSSS-HH
T ss_pred CCCCCchhh
Confidence 678888765
No 483
>PRK06153 hypothetical protein; Provisional
Probab=36.37 E-value=40 Score=27.72 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCCCeEEEeccc-CCh-HHHHHhhcCC-EEEEEecCC
Q 033085 69 FSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl-~~l~~a~~~~-~v~~tD~~~ 102 (128)
+++.+|+=+||| +|- +...+++.|. +++++|.+.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 356799999999 665 4557888887 899999874
No 484
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=36.37 E-value=88 Score=23.57 Aligned_cols=35 Identities=29% Similarity=0.144 Sum_probs=24.0
Q ss_pred cCCCCeEEEeccc--CChHHHHHhh-cCCEEEEEecCC
Q 033085 68 RFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G--tGl~~l~~a~-~~~~v~~tD~~~ 102 (128)
...+.+||=.|++ .|.+.+.+++ .|.+|++++-++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3467788888853 6666665555 577998888665
No 485
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.37 E-value=87 Score=24.12 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
..+.+||=.|+| .|.+.+.+++ .|. .|+++|.++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~ 201 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP 201 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 357788888876 5555555555 466 589998875
No 486
>PRK07576 short chain dehydrogenase; Provisional
Probab=36.08 E-value=1.8e+02 Score=21.47 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=23.5
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ ++..|++|++++.++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4677888888755554432 344688999998775
No 487
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=35.97 E-value=1.3e+02 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356788888876665433 2345688888888765
No 488
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=35.71 E-value=66 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=28.9
Q ss_pred ceEeechHHHHHHH---HHhccccCCCCeEEEecccCChHHHHHhh----cC--CEEEEEecCC
Q 033085 48 GLFVWPCSVILAEY---VWQQRYRFSGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSN 102 (128)
Q Consensus 48 G~~~W~~s~~l~~~---i~~~~~~~~~~~vLELG~GtGl~~l~~a~----~~--~~v~~tD~~~ 102 (128)
|..++.....++.| |.+. +-+.|||+|.-.|-..++.|. .+ .+|+++|++.
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred CeehhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 44444444444443 3332 446899999999888887664 22 4899999964
No 489
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.71 E-value=73 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCeEEEeccc-CChHHH-HHhhcCCEEEEEecCCh
Q 033085 71 GANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 71 ~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~~ 103 (128)
+..|+=+|.| +|.... ++.+.|.+|++.|..+.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3467778877 666422 45567999999998753
No 490
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=35.66 E-value=62 Score=25.07 Aligned_cols=38 Identities=29% Similarity=0.214 Sum_probs=28.6
Q ss_pred CeEEEeccc--CChHHHHHhhcCCEEEEEecCChHHHHHHHH
Q 033085 72 ANVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (128)
Q Consensus 72 ~~vLELG~G--tGl~~l~~a~~~~~v~~tD~~~~~~~l~~~~ 111 (128)
.+|+=+|+| -|+++..+++.|.+|++.+-.. +-++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~--~~~~~i~ 42 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR--QRLAAYQ 42 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech--HHHHHHh
Confidence 468889999 6777888888899999998864 2444444
No 491
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=35.62 E-value=1.8e+02 Score=22.81 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=22.3
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh-cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|++.+.+++ .|. +|++++-++
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 225 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK 225 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 3456778877765 4444444443 577 799998665
No 492
>PRK10083 putative oxidoreductase; Provisional
Probab=35.47 E-value=1.7e+02 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=23.6
Q ss_pred cCCCCeEEEeccc-CChHHHHHhh--cCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAG-TSLPGLVAAK--VGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~--~~~-~v~~tD~~~ 102 (128)
...+.+||=.|+| .|.+.+.+++ .|+ .|++++..+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~ 196 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRID 196 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 3457788888876 5555555666 387 477788765
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=35.33 E-value=1.3e+02 Score=24.89 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=23.8
Q ss_pred CCCeEEEeccc-CChHHH-HHhhcCCEEEEEecCC
Q 033085 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (128)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~~~~v~~tD~~~ 102 (128)
.+++|+=+|+| .|+... .+++.|.+|++.|..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56789999999 454443 4456788999888664
No 494
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=35.32 E-value=44 Score=29.38 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=26.7
Q ss_pred cCCCCeEEEecccC-Ch-HHHHHhhcCC-EEEEEecCC
Q 033085 68 RFSGANVVELGAGT-SL-PGLVAAKVGS-NVTLTDDSN 102 (128)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl-~~l~~a~~~~-~v~~tD~~~ 102 (128)
.++..+||=+|||+ |. ++..++.+|. +++++|.+.
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 34678999999994 54 5557788887 899998764
No 495
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=35.32 E-value=45 Score=26.85 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=18.4
Q ss_pred EEEeccc-CChHH-HHHhhcC-CEEEEEecCC
Q 033085 74 VVELGAG-TSLPG-LVAAKVG-SNVTLTDDSN 102 (128)
Q Consensus 74 vLELG~G-tGl~~-l~~a~~~-~~v~~tD~~~ 102 (128)
||=+|+| .|+.+ +.+++.| ++|++.|..+
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~ 33 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKMP 33 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence 4556777 45533 4556678 7888887654
No 496
>PRK08628 short chain dehydrogenase; Provisional
Probab=35.23 E-value=1.7e+02 Score=21.16 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=20.4
Q ss_pred CCCCeEEEecccCChHHHH---HhhcCCEEEEEecCC
Q 033085 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~~~~v~~tD~~~ 102 (128)
++++++|=.|++.|+-.-+ +++.|++|++++.++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh
Confidence 4567777777665543332 334577777776655
No 497
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.22 E-value=15 Score=24.37 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=9.8
Q ss_pred EEEecccCChHHH
Q 033085 74 VVELGAGTSLPGL 86 (128)
Q Consensus 74 vLELG~GtGl~~l 86 (128)
-||+|||.|..--
T Consensus 6 NIDIGcG~GNTmd 18 (124)
T PF07101_consen 6 NIDIGCGAGNTMD 18 (124)
T ss_pred ccccccCCCcchh
Confidence 3699999987543
No 498
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=35.00 E-value=1.4e+02 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=39.5
Q ss_pred cCCCCeEEEecccCChHHHHHhhcCC--EEEEEecCChHHHHHHHHHHHHHhCCC
Q 033085 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (128)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~~~--~v~~tD~~~~~~~l~~~~~n~~~N~l~ 120 (128)
.+.|+.|+-+| ---+.|+.++..+. +|.++|++. .+++...+.++.-++.
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~ 201 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYN 201 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCcc
Confidence 45778899999 66777777766554 899999998 4999998888877665
No 499
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=34.95 E-value=1.8e+02 Score=21.27 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCCCeEEEecccCChHHH---HHhhcCCEEEEEecC
Q 033085 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (128)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~~~~v~~tD~~ 101 (128)
++++++|=.|++.|+-.- .+++.|++|+++...
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 467889988988776544 344568888887543
No 500
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=34.80 E-value=35 Score=25.81 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=14.5
Q ss_pred hHHHHHhhcCCEEEEEecCCh
Q 033085 83 LPGLVAAKVGSNVTLTDDSNR 103 (128)
Q Consensus 83 l~~l~~a~~~~~v~~tD~~~~ 103 (128)
.++..+++.|.+|.++|.++.
T Consensus 20 nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 20 NIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred HHHHHHHhCCCEEEEEeeCCc
Confidence 344456677778888888773
Done!