BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033086
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VCM DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 72 SGTTEGV-----CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
SGT E V C VC ED+ E +Q+PC H+FH CI W+ +SCPVCR
Sbjct: 6 SGTEEHVGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120
+C VC+EDF P++ G PC H FH KC+ W+ + CP+C
Sbjct: 17 LCAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
G+ E C +C ++ + ++PC H FH C+S W+ S +CPVCR
Sbjct: 35 GAVGQEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C VC+ + + E CGH FHA+C+ W+ ++CP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C +C+ + E +++PC H+FH C+ W+ + CP+CR
Sbjct: 17 CTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 67 PTGAGSGTTEGVCMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLSNSCPVCRSR 123
P GSGT C +CM+ + G+ + CGHVF ++C+ + +N+CP CR +
Sbjct: 65 PIYIGSGTVS--CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 122
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLSNSCPVCRSR 123
GSGT C +CM+ + G+ + CGHVF ++C+ + +N+CP CR +
Sbjct: 4 GSGTVS--CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 57
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 329 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 329 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 331 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 381
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 331 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 381
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C++ W S CP C RC I G
Sbjct: 335 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC--RCEIKG 385
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120
GS + G C +C+ED +PCGH+ H C + CP+C
Sbjct: 1 GSSGSSG-CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
T C +C+ED P + +PC H F CI+ WI + +CP+C+
Sbjct: 2 ATVAERCPICLED--PSNY-SMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 72 SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120
++ C +C+ED +PCGH+ H C + CP+C
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQ---VPCGHVFHAKCISTWISLSNSCPVCR 121
T E C +CM+ G+ +PC H F KCI W +CP+CR
Sbjct: 13 TDEEECCICMD--------GRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 79 CMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLSNSCPVCRSR 123
C +CM+ + G+ + CGHVF ++C+ + +N+CP CR +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 60
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 79 CMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLSNSCPVCRSR 123
C +CM+ + G+ + CGHVF ++C+ + +N+CP CR +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
E C++C E F + C H F + CI+ W+ CP+CR
Sbjct: 52 NELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
E C++C E F + C H F + CI+ W+ CP+CR
Sbjct: 52 NELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 79 CMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLSNSCPVCRSR 123
C +CM+ + G+ + CGHVF ++C+ + +N+CP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 53
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
E C++C E F + C H F + CI+ W+ CP+CR
Sbjct: 63 NELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRK 106
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 97 PCGHVFHAKCISTWISLSNSCPVCRSRCIIS 127
C H FH C+S W+ +N CP+C+ ++
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123
+CMVC E+ E PCGH C + + SCPVCRSR
Sbjct: 20 LCMVCCEE----EINSTFCPCGHTV---CCESCAAQLQSCPVCRSR 58
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNS---CPVC 120
C +CME F ++ K + CGH +C+ ++ S + CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 21 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C+++W S CP C RC I G
Sbjct: 24 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC--RCEIKG 74
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 98 CGHVFHAKCISTWISLSNSCPV 119
C H FH CIS W+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCIISG 128
G+T +C +C E+ + K PCGH+ C++ W S CP C RC I G
Sbjct: 23 GSTFQLCKICAEN----DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC--RCEIKG 73
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 78 VCMVCMEDFDPQEFPGKQVPCG-----HVFHAKCISTWISLSN--SCPVC 120
VC +C E+ + F CG H C+STW+++S +C +C
Sbjct: 8 VCWICNEELGNERFRA----CGCTGELENVHRSCLSTWLTISRNTACQIC 53
>pdb|3ML3|A Chain A, Crystal Structure Of The Icsa Autochaperone Region
Length = 189
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 49 KIEVTGTNGGLLMVASDLPTGAGSGTTEGVCMVCMEDFDPQEF--PGKQVPCGHVFHAK 105
++E+ G G+ VA G+G T EGV ++ + D F G+ V + + K
Sbjct: 94 RLEIAGHASGITYVAVTNEGGSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLK 152
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQV---PCGHVFHAKCISTWISLS 114
GS + GVC +C E++ E P + V CG +H C + I S
Sbjct: 1 GSSGSSGVCTICQEEYS--EAPNEMVICDKCGQGYHQLCHTPHIDSS 45
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW---ISLSNSCPVC 120
E C VC+E + CGH F CI+ W + CPVC
Sbjct: 14 VEASCSVCLEYLKEPVI----IECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 96 VPCGHVFHAKCISTWISLSNSCPVC 120
+ C H F CI ++ S CP+C
Sbjct: 28 IECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 96 VPCGHVFHAKCISTWISLSNSCPVC 120
+ C H F CI ++ S CP+C
Sbjct: 32 IECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 96 VPCGHVFHAKCISTWISLSNSCPVC 120
+ C H F CI ++ S CP+C
Sbjct: 32 IECLHSFCKTCIVRYLETSKYCPIC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,759
Number of Sequences: 62578
Number of extensions: 123161
Number of successful extensions: 259
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 56
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)