BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033086
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C VCM+DF+ + KQ+PC H++H C+ W+ L NSCPVCR
Sbjct: 224 CAVCMDDFE-EGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCR 265
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 62 VASDLPT---GAGSGTTEGV-CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSC 117
V LP GA SG +G+ C VC+ F+P E C H FH +C+ TW+ ++C
Sbjct: 125 VIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTC 184
Query: 118 PVCRSR 123
P+CR R
Sbjct: 185 PLCRYR 190
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ C++C E+ + P K++PC HVFHA C+ +W +CP CR+
Sbjct: 289 DATCIICREEMTVESSP-KRLPCSHVFHAHCLRSWFQRQQTCPTCRT 334
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 69 GAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125
G G E C+VC+ +F E PC HVFHA C+ W+S S++CP+CR++ +
Sbjct: 75 GIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVV 131
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C VCM++F+ KQ+PC HVFH C+ W+ L NSCPVCR
Sbjct: 216 CAVCMDEFEDGS-DVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ C++C E+ P K++PC HVFHA C+ +W +CP CR+
Sbjct: 289 DATCIICREEMTVDASP-KRLPCSHVFHAHCLRSWFQRQQTCPTCRT 334
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
++ +C++C ED K++PCGH+FH C+ +W +CP CR
Sbjct: 285 SDNICIICREDMVNHS---KKLPCGHIFHTTCLRSWFQRQQTCPTCR 328
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
G G E C +C+ +F+ QE PC H FHA CI W+S ++CPVCR+
Sbjct: 117 GKGGVE--CAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRA 166
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VC DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 391 SEQTLCVVCFSDFESRQLL-RVLPCNHEFHAKCVDKWLKTNRTCPICRA 438
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 70 AGSGTTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLSNSCPVCRS 122
A TT C +C+ D+ + +Q+P C H+FH KCI TW+ L+ +CPVCR+
Sbjct: 138 AKGPTTASCCAICLGDYKGKHL-LRQLPDCNHLFHLKCIDTWLRLNPTCPVCRT 190
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
G G E C +C+ +F+ +E PC H FHA CI W+S ++CPVCR+
Sbjct: 122 GKGGVE--CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRA 171
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VC DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 293 SEQTLCVVCFSDFEVRQL-LRVLPCNHEFHAKCVDKWLKANRTCPICRA 340
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VCM DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 458 SEQTLCVVCMCDFESRQL-LRVLPCNHEFHAKCVDKWLKANRTCPICRA 505
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
C VC ED+ +E +Q+PC H FH+ CI W+ L ++CPVCR
Sbjct: 229 CPVCKEDYTVEE-KVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 271
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VC DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 350 SEQTLCVVCFSDFEVRQL-LRVLPCNHEFHAKCVDKWLKANRTCPICRA 397
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
C VC ED+ +E +Q+PC H FH+ CI W+ L ++CPVCR
Sbjct: 228 CPVCKEDYTVEE-EVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 270
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 67 PTGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
P A G C VC+ +F+ QE +++PC H+FH CI W++ +NSCP+CR
Sbjct: 70 PEQADKGVK---CPVCLLEFEEQE-SVREMPCKHLFHTGCILPWLNKTNSCPLCR 120
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 79 CMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLSNSCPVCRSRCIIS 127
C++C+ DF+ E K +P CGHVFH C+ TW+S +CP+CRS + S
Sbjct: 140 CVICLSDFEEGE-TVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFS 188
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCIISG 128
GT + +C VC+ +F+ +E + C H+FH CI W+ N+CP+CRS IS
Sbjct: 99 GTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISS 154
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VCM DF+ ++ + +PC H FHAKC+ W+ + +CP+CR+
Sbjct: 461 SEQTLCVVCMCDFESRQL-LRVLPCNHEFHAKCVDKWLKGNRTCPICRA 508
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 75 TEGVCMVCMEDFDP------QEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
T+ +C++CM+D P K +PCGH+ H C+ +W+ S +CP+CR
Sbjct: 316 TDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPICR 368
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 41 PSDDQDQQKIEVTGTNGGLLMVAS------DLPTGAGSGTTEG------------VCMVC 82
P + ++K G N AS D + GS T EG C++C
Sbjct: 1088 PKKSESEEKSAQDGNNASPSHTASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVIC 1147
Query: 83 MEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
E+ P+ +PC H FH++CI W+ +CP CR
Sbjct: 1148 HENLSPENL--SVLPCAHKFHSQCIRPWLMQQGTCPTCR 1184
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+ + +C+VC DF+ ++ + +PC H FH KC+ W+ + +CP+CR+
Sbjct: 375 SEQTLCVVCFSDFEARQL-LRVLPCNHEFHTKCVDKWLKANRTCPICRA 422
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 38 PSTPSDDQDQQKIEVTGTNGGLLMVASDLPTGAGSGTTEGVCMVCMEDFDPQEFPGKQVP 97
P+ S + + EV+ + G ++MV + G G T GK++P
Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGET-----------------GKKLP 274
Query: 98 CGHVFHAKCISTWISLSNSCPVCR 121
CGH +H CI W+ NSCPVCR
Sbjct: 275 CGHCYHGDCIVPWLGTRNSCPVCR 298
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 72 SGTTEGVCMVCMEDF----DPQEFPGK-----QVPCGHVFHAKCISTWISLSNSCPVCR 121
S + +C++CM++ + Q + K ++PCGH+ H C+ W+ S +CP+CR
Sbjct: 342 SANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICR 400
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123
E C+VC + F ++ CGHVFH KC+ TW+ +++CP+CR+R
Sbjct: 107 ESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRAR 154
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 62 VASDLP-TGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120
V LP T S + C VC+ +F+ +E ++PC H+FH+ CI W+S +NSCP+C
Sbjct: 70 VVESLPRTVISSAKADLKCPVCLLEFEAEE-TVIEMPCHHLFHSNCILPWLSKTNSCPLC 128
Query: 121 R 121
R
Sbjct: 129 R 129
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
T+ VC++C E+ K++PC H+FH+ C+ +W +CP CR
Sbjct: 287 TDNVCIICREEMVTG---AKKLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 65 DLPTGAG----SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS-NSCPV 119
DL G SGT E C+VC+ +F+ + + C H FH +CI W++ S NSCP+
Sbjct: 508 DLEKAGGVFPFSGTDER-CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPL 566
Query: 120 CRSRCIISG 128
CR++ + S
Sbjct: 567 CRTKGVASA 575
>sp|Q5Z5F2|ATL61_ORYSJ E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp.
japonica GN=Os06g0535400 PE=2 SV=1
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 68 TGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
+G+G G E C VC+ + CGH FHAKCI W++ +CPVCR+
Sbjct: 174 SGSGHGAAEDKCCVCLAGMREAQALRDLPRCGHRFHAKCIGKWLTAHPTCPVCRT 228
>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
Length = 1208
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C++C E+ P+ +PC H FHA+CI W+ +CP CR
Sbjct: 1148 CVICHENLSPENL--SVLPCAHKFHAQCIRPWLMQQGTCPTCR 1188
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 64 SDLPTGAGSGTTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLSN--SCPVC 120
SDLPT E C VC+ DF+ + +Q+P CGHVFH C+ WI N CPVC
Sbjct: 76 SDLPTDP-----EDCCTVCLSDFESDD-KVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVC 129
Query: 121 RSRCI 125
R R +
Sbjct: 130 RHRFL 134
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
G+G E C +C+ +F+ +E PC H FHA CI W+S ++CPVCR+
Sbjct: 114 GNGGVE--CAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRA 163
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123
C+VC++ F ++ K CGHVFH KC+ W+ ++CP+CR R
Sbjct: 115 CVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDR 159
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 15 LRCPIIDLSFDLDEALTMTTTDTPSTPSDDQDQQKIEVTGTNGGLLMVASDLPTGA---- 70
L C +I + L+ AL T SDDQ N G L A+ L A
Sbjct: 40 LLCALI-CALSLNSALRCVLRITRRFTSDDQVSNASNANA-NLGRLAAATGLKKQALKQI 97
Query: 71 -----GSGTTEGV---CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
GSG + C++C+ DF+ E C H FH +CI TW+ +SCP CR
Sbjct: 98 PVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQ 157
Query: 123 RCII 126
++
Sbjct: 158 SLLL 161
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCIIS 127
G G E C VC+ +F+ E PC HVFHA C+ W+S ++CP+CR+ +++
Sbjct: 129 GKGGVE--CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLN 183
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 71 GSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
G G E C +C+ +F +E PC H FHA CI W+S ++CP CR+
Sbjct: 117 GKGGVE--CAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRA 166
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C VC+ +F+ E +Q+PC H+FH+ CI W+ +NSCP+CR
Sbjct: 79 CPVCLLEFEEGET-VRQLPCEHLFHSSCILPWLGKTNSCPLCR 120
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 71 GSGTTEGV--CMVCMEDFDP--QEFPGKQ---------VPCGHVFHAKCISTWISLSNSC 117
G GT E C +CM D +E P PC HVFH C+ W++ C
Sbjct: 689 GGGTAEHTVDCAICMSDVPIYIEEIPETHKVDQHSYMVTPCNHVFHTSCLENWMNYKLQC 748
Query: 118 PVCRS 122
PVCRS
Sbjct: 749 PVCRS 753
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C VC+ +F+ E +Q+PC H+FH+ CI W+ +NSCP+CR
Sbjct: 79 CPVCLLEFEEGET-VRQLPCEHLFHSACILPWLGKTNSCPLCR 120
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 79 CMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLSNSCPVCRS 122
C VC+ +F+ ++ G+ +P CGHVFH CI TW +SCP+CR+
Sbjct: 113 CSVCLSEFE-EDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 66 LPTGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120
L +C VC+EDF P++ G PC H FH KC+ W+ + CP+C
Sbjct: 65 LKEKVKELNLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLVKWLEVRKVCPLC 118
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 72 SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124
SGT VC +C+ ++ +E C H FH +CI W+ + SCP+CR+ C
Sbjct: 313 SGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCRNSC 365
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 66 LPTGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
LPTG+ + VC +C+ ++ +E C H FH +CI W+ L +SCPVCRS
Sbjct: 318 LPTGSN----DVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRS 370
>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2
SV=1
Length = 302
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 41 PSDDQD-QQKIEVTGTNGGLLMVASDLPTGAGSGTTE------GV-CMVCMEDFDPQEFP 92
P D D + + +T G + + PT S E GV C VC+ +F+ E
Sbjct: 50 PFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETL 109
Query: 93 GKQVPCGHVFHAKCISTWISLSNSCPVCR 121
C HVFHA C+S W+S ++CP+CR
Sbjct: 110 RLMPECCHVFHADCVSVWLSDHSTCPLCR 138
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 60 LMVASDLPTGAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPV 119
L+ +SDL E C +C+ +F+ E C H FH KCI W+S +SCP
Sbjct: 92 LVYSSDLELAGA----EAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPT 147
Query: 120 CRS 122
CR+
Sbjct: 148 CRT 150
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
C++C+ ++ +F K CGH FH +CI W+S ++CP+CRS
Sbjct: 138 CVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRS 181
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122
C VC ED+ E +Q+PC H+FH CI W+ +SCPVCR
Sbjct: 231 CPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLEQHDSCPVCRK 273
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 64 SDLPTGAGSGTTE--GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
+ LP GS E VC +C +F + PC H FHA C+ W+ + ++CP+C
Sbjct: 530 NSLPEIKGSHLQEIDDVCAICYHEFTTS---ARITPCNHYFHALCLRKWLYIQDTCPMCH 586
Query: 122 SRCII 126
+ I
Sbjct: 587 QKVYI 591
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121
+ VC++C E+ K++PC H+FH C+ +W +CP CR
Sbjct: 288 DNVCIICREEMVTG---AKRLPCNHIFHTSCLRSWFQRQQTCPTCR 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,363,353
Number of Sequences: 539616
Number of extensions: 2192784
Number of successful extensions: 6134
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 266
Number of HSP's that attempted gapping in prelim test: 5683
Number of HSP's gapped (non-prelim): 674
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)