Query 033086
Match_columns 128
No_of_seqs 175 out of 1535
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.6 3.7E-17 8E-22 87.5 1.5 43 78-121 2-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.5 7.3E-15 1.6E-19 108.3 2.3 47 77-124 230-277 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.5 4.8E-14 1E-18 83.2 3.8 46 76-121 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.4 7.1E-14 1.5E-18 98.9 4.0 52 74-125 172-227 (238)
5 COG5243 HRD1 HRD ubiquitin lig 99.4 1.5E-13 3.3E-18 101.3 3.3 52 73-124 284-344 (491)
6 KOG0317 Predicted E3 ubiquitin 99.4 2.7E-13 5.9E-18 96.9 3.2 50 73-126 236-285 (293)
7 PF13920 zf-C3HC4_3: Zinc fing 99.4 3.3E-13 7.1E-18 74.0 2.6 46 76-125 2-48 (50)
8 PLN03208 E3 ubiquitin-protein 99.4 4.9E-13 1.1E-17 91.4 4.0 48 74-125 16-79 (193)
9 PF15227 zf-C3HC4_4: zinc fing 99.3 1.2E-12 2.6E-17 69.1 2.8 38 79-120 1-42 (42)
10 COG5540 RING-finger-containing 99.3 7.1E-13 1.5E-17 95.4 2.4 51 74-125 321-372 (374)
11 PF12861 zf-Apc11: Anaphase-pr 99.3 2.8E-12 6E-17 76.7 3.9 52 76-127 21-84 (85)
12 KOG0823 Predicted E3 ubiquitin 99.3 1.5E-12 3.3E-17 90.6 3.1 50 73-126 44-96 (230)
13 KOG0320 Predicted E3 ubiquitin 99.3 1.2E-12 2.5E-17 87.8 2.2 52 73-126 128-179 (187)
14 PF13923 zf-C3HC4_2: Zinc fing 99.3 1.7E-12 3.7E-17 67.5 2.1 39 79-120 1-39 (39)
15 cd00162 RING RING-finger (Real 99.2 1.1E-11 2.4E-16 65.6 2.8 44 78-124 1-45 (45)
16 PHA02926 zinc finger-like prot 99.2 1.3E-11 2.8E-16 85.7 3.4 52 74-125 168-230 (242)
17 PF14634 zf-RING_5: zinc-RING 99.2 1.8E-11 3.8E-16 65.3 3.1 44 78-122 1-44 (44)
18 smart00504 Ubox Modified RING 99.2 2.1E-11 4.6E-16 69.6 3.2 45 77-125 2-46 (63)
19 PF00097 zf-C3HC4: Zinc finger 99.2 2.1E-11 4.6E-16 63.9 2.5 39 79-120 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 99.1 6.7E-11 1.5E-15 89.3 3.1 49 73-125 23-71 (397)
21 KOG0802 E3 ubiquitin ligase [P 99.1 3.8E-11 8.2E-16 94.6 1.5 51 74-124 289-340 (543)
22 PF13445 zf-RING_UBOX: RING-ty 99.1 9.4E-11 2E-15 62.0 2.4 39 79-118 1-43 (43)
23 smart00184 RING Ring finger. E 99.0 2.2E-10 4.7E-15 58.5 2.8 38 79-120 1-39 (39)
24 COG5194 APC11 Component of SCF 99.0 3.5E-10 7.7E-15 66.2 3.3 33 94-126 50-82 (88)
25 COG5574 PEX10 RING-finger-cont 99.0 3.8E-10 8.2E-15 80.1 2.9 49 74-126 213-263 (271)
26 KOG1493 Anaphase-promoting com 98.9 9.1E-10 2E-14 64.0 1.4 51 77-127 21-83 (84)
27 KOG0287 Postreplication repair 98.9 8.7E-10 1.9E-14 80.8 1.5 48 74-125 21-68 (442)
28 KOG2164 Predicted E3 ubiquitin 98.8 1.4E-09 2.9E-14 83.4 2.3 47 76-126 186-237 (513)
29 KOG1734 Predicted RING-contain 98.8 1.1E-09 2.4E-14 78.0 1.4 61 64-127 215-283 (328)
30 PF04564 U-box: U-box domain; 98.8 4.3E-09 9.4E-14 62.0 2.7 48 75-126 3-51 (73)
31 PF11793 FANCL_C: FANCL C-term 98.8 1.5E-09 3.2E-14 63.5 0.3 52 76-127 2-68 (70)
32 COG5432 RAD18 RING-finger-cont 98.8 3.5E-09 7.6E-14 76.3 2.2 47 74-124 23-69 (391)
33 KOG0804 Cytoplasmic Zn-finger 98.7 9.3E-09 2E-13 77.8 1.9 48 74-123 173-220 (493)
34 TIGR00570 cdk7 CDK-activating 98.7 2E-08 4.3E-13 73.5 3.4 50 76-125 3-54 (309)
35 KOG2177 Predicted E3 ubiquitin 98.6 1.1E-08 2.3E-13 73.9 1.8 44 74-121 11-54 (386)
36 smart00744 RINGv The RING-vari 98.6 5.8E-08 1.2E-12 52.8 2.6 42 78-121 1-49 (49)
37 KOG0828 Predicted E3 ubiquitin 98.5 2.4E-08 5.2E-13 76.4 1.3 52 74-125 569-634 (636)
38 COG5219 Uncharacterized conser 98.5 3.1E-08 6.8E-13 80.8 0.6 53 73-125 1466-1523(1525)
39 KOG2930 SCF ubiquitin ligase, 98.5 7.3E-08 1.6E-12 59.3 1.8 31 96-126 79-109 (114)
40 KOG4265 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 69.7 2.5 48 74-125 288-336 (349)
41 KOG0311 Predicted E3 ubiquitin 98.3 4E-08 8.7E-13 72.5 -1.8 50 73-125 40-90 (381)
42 KOG0825 PHD Zn-finger protein 98.3 1.8E-07 4E-12 75.1 1.3 52 73-125 120-171 (1134)
43 KOG0824 Predicted E3 ubiquitin 98.3 2.3E-07 5E-12 67.2 1.5 48 75-126 6-54 (324)
44 PF14835 zf-RING_6: zf-RING of 98.3 2.2E-07 4.8E-12 52.6 0.5 45 75-124 6-50 (65)
45 KOG4172 Predicted E3 ubiquitin 98.3 2.3E-07 5E-12 50.7 0.4 46 75-124 6-53 (62)
46 KOG0827 Predicted E3 ubiquitin 98.2 5.4E-07 1.2E-11 67.4 1.9 44 77-121 5-52 (465)
47 KOG0978 E3 ubiquitin ligase in 98.2 2.8E-07 6E-12 73.8 0.2 48 74-125 641-689 (698)
48 KOG4159 Predicted E3 ubiquitin 98.2 1E-06 2.2E-11 66.9 2.1 48 74-125 82-129 (398)
49 KOG1785 Tyrosine kinase negati 98.1 6.6E-07 1.4E-11 67.3 0.6 49 74-128 367-417 (563)
50 KOG1039 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 65.1 2.1 52 74-125 159-221 (344)
51 PF14570 zf-RING_4: RING/Ubox 98.1 3.6E-06 7.9E-11 45.2 2.7 47 79-125 1-48 (48)
52 KOG1645 RING-finger-containing 98.0 3.8E-06 8.2E-11 63.3 2.5 49 75-123 3-54 (463)
53 KOG1941 Acetylcholine receptor 98.0 2.2E-06 4.9E-11 64.3 0.7 49 74-122 363-413 (518)
54 KOG2879 Predicted E3 ubiquitin 97.9 1.1E-05 2.3E-10 58.1 3.6 51 72-125 235-287 (298)
55 PF11789 zf-Nse: Zinc-finger o 97.9 1E-05 2.3E-10 45.2 2.3 43 74-119 9-53 (57)
56 KOG0297 TNF receptor-associate 97.8 1.1E-05 2.4E-10 61.5 2.3 49 73-125 18-67 (391)
57 KOG4445 Uncharacterized conser 97.6 2.1E-05 4.5E-10 57.3 1.1 37 74-111 113-149 (368)
58 KOG4185 Predicted E3 ubiquitin 97.6 6.2E-05 1.3E-09 55.3 3.0 50 77-126 4-56 (296)
59 KOG2660 Locus-specific chromos 97.6 1.3E-05 2.8E-10 59.0 -0.7 47 74-123 13-59 (331)
60 PHA02825 LAP/PHD finger-like p 97.5 0.0001 2.2E-09 49.2 3.5 49 73-126 5-60 (162)
61 COG5152 Uncharacterized conser 97.5 3.4E-05 7.3E-10 53.2 1.1 46 74-123 194-239 (259)
62 PHA02862 5L protein; Provision 97.5 9.5E-05 2.1E-09 48.5 3.1 45 77-126 3-54 (156)
63 KOG3268 Predicted E3 ubiquitin 97.3 0.00014 3.1E-09 49.4 2.3 53 75-127 164-230 (234)
64 COG5175 MOT2 Transcriptional r 97.3 0.00016 3.5E-09 53.7 2.5 53 73-125 11-64 (480)
65 KOG1428 Inhibitor of type V ad 97.3 0.00014 3E-09 62.7 2.2 54 73-127 3483-3546(3738)
66 KOG1813 Predicted E3 ubiquitin 97.3 9.5E-05 2E-09 53.8 1.0 45 76-124 241-285 (313)
67 KOG3039 Uncharacterized conser 97.2 0.00028 6.1E-09 50.2 2.8 51 74-124 219-269 (303)
68 PF04641 Rtf2: Rtf2 RING-finge 97.1 0.00039 8.4E-09 50.4 3.0 52 73-125 110-161 (260)
69 KOG4275 Predicted E3 ubiquitin 97.1 7.1E-05 1.5E-09 54.4 -0.8 41 76-124 300-341 (350)
70 KOG1002 Nucleotide excision re 97.1 0.0002 4.2E-09 56.1 1.5 53 70-126 530-587 (791)
71 KOG4692 Predicted E3 ubiquitin 97.1 0.00033 7.1E-09 52.3 2.4 48 74-125 420-467 (489)
72 COG5222 Uncharacterized conser 97.0 0.00034 7.4E-09 51.2 1.6 47 77-126 275-323 (427)
73 PF12906 RINGv: RING-variant d 97.0 0.00063 1.4E-08 36.5 2.1 40 79-120 1-47 (47)
74 KOG1814 Predicted E3 ubiquitin 96.9 0.00045 9.7E-09 52.4 1.8 37 75-112 183-219 (445)
75 PF10367 Vps39_2: Vacuolar sor 96.9 0.00034 7.3E-09 43.6 0.6 33 74-108 76-108 (109)
76 KOG1940 Zn-finger protein [Gen 96.8 0.0007 1.5E-08 49.2 2.1 46 77-122 159-204 (276)
77 KOG3970 Predicted E3 ubiquitin 96.8 0.00095 2.1E-08 47.0 2.6 51 74-126 48-106 (299)
78 PF14447 Prok-RING_4: Prokaryo 96.8 0.00055 1.2E-08 37.6 1.1 45 76-126 7-51 (55)
79 KOG1952 Transcription factor N 96.7 0.00071 1.5E-08 55.5 1.7 50 74-123 189-245 (950)
80 PF05883 Baculo_RING: Baculovi 96.7 0.00082 1.8E-08 43.7 1.6 45 76-121 26-76 (134)
81 KOG4739 Uncharacterized protei 96.7 0.00071 1.5E-08 48.0 1.0 45 77-125 4-48 (233)
82 KOG0826 Predicted E3 ubiquitin 96.7 0.0012 2.7E-08 48.7 2.3 48 73-123 297-344 (357)
83 KOG2114 Vacuolar assembly/sort 96.6 0.00088 1.9E-08 54.9 1.5 41 76-122 840-880 (933)
84 COG5236 Uncharacterized conser 96.6 0.0019 4.1E-08 48.3 2.8 49 73-125 58-108 (493)
85 PF08746 zf-RING-like: RING-li 96.5 0.0036 7.7E-08 32.9 2.9 41 79-120 1-43 (43)
86 KOG1571 Predicted E3 ubiquitin 96.3 0.0025 5.4E-08 47.7 1.8 46 73-125 302-347 (355)
87 KOG0801 Predicted E3 ubiquitin 96.2 0.0015 3.2E-08 43.8 0.3 31 73-104 174-204 (205)
88 KOG3053 Uncharacterized conser 96.1 0.0026 5.7E-08 45.6 1.3 53 73-125 17-82 (293)
89 KOG2817 Predicted E3 ubiquitin 96.0 0.0061 1.3E-07 46.2 2.9 47 74-121 332-381 (394)
90 KOG2932 E3 ubiquitin ligase in 96.0 0.0029 6.3E-08 46.6 1.1 43 77-124 91-133 (389)
91 KOG3800 Predicted E3 ubiquitin 95.8 0.0069 1.5E-07 44.2 2.4 47 78-124 2-50 (300)
92 PF10272 Tmpp129: Putative tra 95.8 0.0048 1E-07 46.6 1.6 28 98-125 311-351 (358)
93 PHA03096 p28-like protein; Pro 95.4 0.0094 2E-07 43.8 1.9 46 77-122 179-231 (284)
94 KOG1001 Helicase-like transcri 95.2 0.0082 1.8E-07 49.0 1.1 43 77-124 455-499 (674)
95 PF03854 zf-P11: P-11 zinc fin 95.2 0.022 4.7E-07 30.4 2.3 42 78-125 4-46 (50)
96 PF05290 Baculo_IE-1: Baculovi 95.0 0.015 3.2E-07 37.8 1.7 50 75-127 79-134 (140)
97 KOG2034 Vacuolar sorting prote 95.0 0.013 2.7E-07 48.6 1.5 37 73-111 814-850 (911)
98 KOG4367 Predicted Zn-finger pr 94.8 0.018 4E-07 44.5 1.9 36 74-113 2-37 (699)
99 KOG0827 Predicted E3 ubiquitin 94.7 0.001 2.2E-08 50.2 -4.8 53 74-126 194-246 (465)
100 KOG3002 Zn finger protein [Gen 94.7 0.026 5.5E-07 41.8 2.4 44 73-124 45-90 (299)
101 PF02891 zf-MIZ: MIZ/SP-RING z 94.6 0.01 2.3E-07 32.1 0.2 43 77-123 3-50 (50)
102 COG5220 TFB3 Cdk activating ki 94.6 0.0096 2.1E-07 42.5 -0.1 48 75-122 9-61 (314)
103 KOG3899 Uncharacterized conser 94.2 0.025 5.4E-07 41.5 1.5 29 98-126 325-366 (381)
104 PF07800 DUF1644: Protein of u 94.2 0.043 9.3E-07 36.8 2.4 32 76-111 2-46 (162)
105 KOG1100 Predicted E3 ubiquitin 94.0 0.021 4.6E-07 40.1 0.7 38 79-124 161-199 (207)
106 KOG0298 DEAD box-containing he 93.9 0.016 3.5E-07 49.8 -0.1 45 74-122 1151-1196(1394)
107 KOG1609 Protein involved in mR 93.8 0.06 1.3E-06 39.6 2.9 52 75-126 77-135 (323)
108 PF14446 Prok-RING_1: Prokaryo 92.6 0.16 3.4E-06 27.9 2.6 46 75-124 4-51 (54)
109 KOG0309 Conserved WD40 repeat- 92.4 0.08 1.7E-06 43.6 1.8 28 92-119 1042-1069(1081)
110 KOG4362 Transcriptional regula 92.1 0.036 7.8E-07 45.1 -0.4 47 74-124 19-68 (684)
111 KOG1812 Predicted E3 ubiquitin 92.1 0.058 1.3E-06 41.4 0.7 38 75-112 145-182 (384)
112 KOG2068 MOT2 transcription fac 91.7 0.14 2.9E-06 38.3 2.2 49 76-124 249-297 (327)
113 KOG3161 Predicted E3 ubiquitin 91.6 0.068 1.5E-06 43.3 0.6 41 76-118 11-51 (861)
114 COG5183 SSM4 Protein involved 91.2 0.28 6.1E-06 40.9 3.7 52 73-126 9-67 (1175)
115 KOG3113 Uncharacterized conser 88.6 0.36 7.8E-06 34.9 2.1 50 74-125 109-158 (293)
116 COG5109 Uncharacterized conser 88.1 0.46 9.9E-06 35.5 2.5 48 73-121 333-383 (396)
117 KOG0825 PHD Zn-finger protein 87.8 0.31 6.7E-06 40.6 1.6 47 76-122 96-151 (1134)
118 PF06906 DUF1272: Protein of u 87.0 1.1 2.3E-05 24.8 2.9 45 77-125 6-52 (57)
119 PF13901 DUF4206: Domain of un 86.4 0.46 1E-05 33.2 1.7 42 74-121 150-196 (202)
120 KOG3005 GIY-YIG type nuclease 86.0 0.94 2E-05 33.0 3.1 48 77-124 183-242 (276)
121 PF07975 C1_4: TFIIH C1-like d 84.9 0.49 1.1E-05 25.7 1.0 43 79-121 2-50 (51)
122 PF07191 zinc-ribbons_6: zinc- 83.5 0.17 3.7E-06 29.3 -1.3 41 77-126 2-42 (70)
123 KOG1812 Predicted E3 ubiquitin 82.7 0.68 1.5E-05 35.6 1.3 46 75-120 305-351 (384)
124 PF06844 DUF1244: Protein of u 82.3 0.73 1.6E-05 26.3 1.0 12 101-112 11-22 (68)
125 KOG1815 Predicted E3 ubiquitin 82.1 0.89 1.9E-05 35.5 1.8 37 73-112 67-103 (444)
126 KOG4718 Non-SMC (structural ma 80.8 0.87 1.9E-05 32.1 1.2 46 74-122 179-224 (235)
127 KOG2066 Vacuolar assembly/sort 80.5 0.6 1.3E-05 38.8 0.3 38 74-111 782-822 (846)
128 PF04710 Pellino: Pellino; In 79.7 0.58 1.3E-05 35.9 0.0 45 76-123 277-337 (416)
129 PF04423 Rad50_zn_hook: Rad50 79.0 1.1 2.4E-05 24.3 1.0 12 114-125 20-31 (54)
130 PF14569 zf-UDP: Zinc-binding 78.5 2.9 6.2E-05 24.7 2.7 51 75-125 8-62 (80)
131 KOG1829 Uncharacterized conser 78.1 0.71 1.5E-05 37.3 0.1 43 74-120 509-556 (580)
132 KOG4185 Predicted E3 ubiquitin 78.0 0.34 7.4E-06 35.6 -1.7 48 75-122 206-264 (296)
133 PF01363 FYVE: FYVE zinc finge 77.9 0.74 1.6E-05 26.1 0.1 38 74-111 7-44 (69)
134 PF10497 zf-4CXXC_R1: Zinc-fin 77.8 1.8 3.8E-05 27.1 1.8 47 75-123 6-70 (105)
135 KOG3039 Uncharacterized conser 77.5 2.5 5.4E-05 30.6 2.6 35 74-112 41-75 (303)
136 cd00065 FYVE FYVE domain; Zinc 77.3 2 4.3E-05 23.2 1.8 36 77-112 3-38 (57)
137 KOG2807 RNA polymerase II tran 77.0 1.7 3.7E-05 32.7 1.7 44 77-121 331-374 (378)
138 TIGR00622 ssl1 transcription f 76.1 3 6.6E-05 26.4 2.5 46 77-122 56-111 (112)
139 KOG0269 WD40 repeat-containing 76.0 1.9 4.2E-05 35.8 2.0 40 78-119 781-820 (839)
140 smart00249 PHD PHD zinc finger 75.3 1.5 3.3E-05 22.1 0.9 30 79-109 2-31 (47)
141 smart00064 FYVE Protein presen 74.1 3.6 7.8E-05 23.1 2.3 37 76-112 10-46 (68)
142 PF04216 FdhE: Protein involve 74.0 0.7 1.5E-05 34.0 -0.9 46 73-122 169-219 (290)
143 PF00628 PHD: PHD-finger; Int 73.8 1.2 2.6E-05 23.6 0.2 44 78-122 1-50 (51)
144 KOG3842 Adaptor protein Pellin 73.3 4.2 9.2E-05 30.6 3.0 50 75-124 340-413 (429)
145 PF14353 CpXC: CpXC protein 73.3 4 8.7E-05 26.1 2.6 46 77-126 2-50 (128)
146 KOG3799 Rab3 effector RIM1 and 71.8 0.76 1.6E-05 30.1 -1.0 52 73-124 62-117 (169)
147 PF05605 zf-Di19: Drought indu 71.7 2 4.2E-05 23.3 0.8 13 76-88 2-14 (54)
148 KOG0802 E3 ubiquitin ligase [P 70.8 2 4.4E-05 34.5 1.0 44 74-125 477-520 (543)
149 KOG3579 Predicted E3 ubiquitin 69.3 3.5 7.7E-05 30.5 1.8 38 73-114 265-306 (352)
150 KOG0824 Predicted E3 ubiquitin 68.2 1.7 3.8E-05 32.2 0.1 50 72-124 101-150 (324)
151 COG3813 Uncharacterized protei 68.0 5.4 0.00012 23.3 2.1 44 79-124 8-51 (84)
152 smart00132 LIM Zinc-binding do 66.6 3.5 7.6E-05 19.9 1.0 36 79-124 2-37 (39)
153 COG3492 Uncharacterized protei 65.2 3 6.5E-05 25.4 0.7 12 101-112 42-53 (104)
154 PF13240 zinc_ribbon_2: zinc-r 64.0 1.1 2.4E-05 20.0 -1.0 7 116-122 15-21 (23)
155 KOG2231 Predicted E3 ubiquitin 63.9 5.5 0.00012 32.9 2.1 44 78-125 2-52 (669)
156 PLN02638 cellulose synthase A 61.7 6.8 0.00015 34.1 2.4 51 75-125 16-70 (1079)
157 KOG1245 Chromatin remodeling c 60.6 3.1 6.8E-05 37.2 0.3 49 74-123 1106-1158(1404)
158 PF00412 LIM: LIM domain; Int 60.6 3.2 6.9E-05 22.3 0.2 9 98-106 18-26 (58)
159 PLN02189 cellulose synthase 59.3 6.9 0.00015 33.9 2.0 51 75-125 33-87 (1040)
160 PF14311 DUF4379: Domain of un 58.1 6.8 0.00015 21.2 1.3 22 98-120 34-55 (55)
161 TIGR01562 FdhE formate dehydro 57.9 2.6 5.6E-05 31.5 -0.6 47 74-122 182-232 (305)
162 PF10146 zf-C4H2: Zinc finger- 57.7 7.2 0.00016 27.9 1.7 24 101-124 195-218 (230)
163 PF02318 FYVE_2: FYVE-type zin 57.0 7.2 0.00016 24.7 1.4 47 75-122 53-102 (118)
164 PLN02436 cellulose synthase A 56.1 8.2 0.00018 33.6 2.0 51 75-125 35-89 (1094)
165 KOG4218 Nuclear hormone recept 56.1 8.9 0.00019 29.3 1.9 16 73-88 12-27 (475)
166 PRK01343 zinc-binding protein; 55.8 6.1 0.00013 22.0 0.8 11 114-124 9-19 (57)
167 PLN02400 cellulose synthase 54.2 8.3 0.00018 33.6 1.7 51 75-125 35-89 (1085)
168 PF09943 DUF2175: Uncharacteri 53.4 12 0.00026 23.3 1.9 34 77-112 3-36 (101)
169 PRK03564 formate dehydrogenase 53.2 7.2 0.00016 29.2 1.1 48 74-122 185-234 (309)
170 KOG3726 Uncharacterized conser 53.0 7.6 0.00016 32.1 1.3 43 76-121 654-696 (717)
171 PF10571 UPF0547: Uncharacteri 52.3 2.7 5.9E-05 19.4 -0.8 8 79-86 3-10 (26)
172 smart00647 IBR In Between Ring 51.7 4.5 9.7E-05 22.1 -0.2 14 97-110 45-58 (64)
173 PLN02248 cellulose synthase-li 51.1 10 0.00022 33.2 1.7 29 97-125 149-177 (1135)
174 PF14169 YdjO: Cold-inducible 50.7 7.5 0.00016 21.8 0.6 12 114-125 39-50 (59)
175 KOG4451 Uncharacterized conser 49.7 11 0.00023 27.1 1.4 24 101-124 250-273 (286)
176 KOG1815 Predicted E3 ubiquitin 49.4 5.2 0.00011 31.3 -0.2 38 77-114 227-268 (444)
177 KOG1729 FYVE finger containing 49.3 3.6 7.8E-05 30.5 -1.0 37 77-114 215-251 (288)
178 PF13719 zinc_ribbon_5: zinc-r 47.7 9.9 0.00021 18.9 0.8 12 116-127 4-15 (37)
179 PF13717 zinc_ribbon_4: zinc-r 46.9 10 0.00022 18.8 0.7 12 116-127 4-15 (36)
180 PLN02195 cellulose synthase A 45.1 22 0.00049 30.8 2.9 51 75-125 5-59 (977)
181 KOG1512 PHD Zn-finger protein 44.9 8.5 0.00018 28.6 0.4 31 77-108 315-345 (381)
182 KOG1074 Transcriptional repres 44.4 14 0.00031 31.4 1.6 15 73-87 602-616 (958)
183 PF13834 DUF4193: Domain of un 44.2 13 0.00028 23.0 1.0 35 70-106 64-98 (99)
184 COG4847 Uncharacterized protei 44.2 22 0.00047 21.9 2.0 36 76-113 6-41 (103)
185 PF12756 zf-C2H2_2: C2H2 type 43.4 11 0.00023 22.3 0.6 48 78-125 1-61 (100)
186 PF06750 DiS_P_DiS: Bacterial 43.3 15 0.00032 22.4 1.2 38 76-126 33-70 (92)
187 PF07649 C1_3: C1-like domain; 42.9 14 0.0003 17.3 0.8 29 78-107 2-30 (30)
188 KOG2169 Zn-finger transcriptio 42.4 19 0.00041 29.7 2.0 47 77-126 307-357 (636)
189 PF11023 DUF2614: Protein of u 41.8 17 0.00036 23.1 1.3 19 109-127 80-98 (114)
190 PF09297 zf-NADH-PPase: NADH p 41.1 6 0.00013 18.9 -0.6 23 100-122 3-29 (32)
191 smart00734 ZnF_Rad18 Rad18-lik 40.6 12 0.00027 17.0 0.4 9 116-124 3-11 (26)
192 cd00350 rubredoxin_like Rubred 39.8 16 0.00034 17.6 0.8 8 115-122 18-25 (33)
193 KOG2979 Protein involved in DN 39.8 17 0.00037 26.5 1.2 42 76-120 176-219 (262)
194 PLN02915 cellulose synthase A 39.5 31 0.00068 30.2 2.9 51 75-125 14-68 (1044)
195 PF01485 IBR: IBR domain; Int 39.4 3.1 6.8E-05 22.7 -2.1 34 77-110 19-58 (64)
196 TIGR02098 MJ0042_CXXC MJ0042 f 39.3 17 0.00038 17.8 0.9 11 116-126 4-14 (38)
197 PF10235 Cript: Microtubule-as 38.7 15 0.00033 22.3 0.8 36 76-124 44-79 (90)
198 PF04710 Pellino: Pellino; In 38.0 11 0.00023 29.3 0.0 50 76-125 328-401 (416)
199 PF13913 zf-C2HC_2: zinc-finge 37.1 16 0.00035 16.4 0.5 10 116-125 4-13 (25)
200 COG0068 HypF Hydrogenase matur 36.9 27 0.00058 29.3 2.0 52 73-124 98-183 (750)
201 COG5627 MMS21 DNA repair prote 36.8 17 0.00036 26.3 0.8 41 76-119 189-231 (275)
202 PF09723 Zn-ribbon_8: Zinc rib 36.8 7.5 0.00016 19.9 -0.7 28 94-122 7-34 (42)
203 PF09237 GAGA: GAGA factor; I 36.7 13 0.00029 20.2 0.2 9 116-124 26-34 (54)
204 PF13832 zf-HC5HC2H_2: PHD-zin 35.9 32 0.00069 21.1 1.9 33 75-110 54-88 (110)
205 PF00096 zf-C2H2: Zinc finger, 35.0 15 0.00032 15.6 0.2 10 116-125 2-11 (23)
206 KOG0956 PHD finger protein AF1 34.8 41 0.00088 28.3 2.7 28 94-121 42-69 (900)
207 PF03119 DNA_ligase_ZBD: NAD-d 33.5 22 0.00047 16.6 0.7 10 116-125 1-10 (28)
208 PF13248 zf-ribbon_3: zinc-rib 33.3 7.8 0.00017 17.6 -0.9 7 116-122 18-24 (26)
209 PF10083 DUF2321: Uncharacteri 33.3 20 0.00044 24.1 0.7 23 99-124 27-49 (158)
210 COG2835 Uncharacterized conser 33.0 21 0.00047 20.0 0.7 11 116-126 10-20 (60)
211 KOG2071 mRNA cleavage and poly 32.6 27 0.00058 28.5 1.4 37 74-110 511-556 (579)
212 PRK11595 DNA utilization prote 32.3 37 0.00081 23.9 2.0 7 79-85 8-14 (227)
213 PF10013 DUF2256: Uncharacteri 31.9 22 0.00048 18.4 0.6 11 114-124 8-18 (42)
214 PRK11827 hypothetical protein; 31.5 15 0.00033 20.5 -0.0 13 113-125 7-19 (60)
215 PRK11088 rrmA 23S rRNA methylt 31.3 33 0.00072 24.7 1.7 25 77-102 3-27 (272)
216 KOG1818 Membrane trafficking a 31.3 20 0.00044 29.5 0.6 44 77-120 166-217 (634)
217 COG4647 AcxC Acetone carboxyla 31.1 26 0.00056 22.9 0.9 16 90-105 67-82 (165)
218 smart00109 C1 Protein kinase C 30.6 49 0.0011 16.6 1.9 35 76-110 11-45 (49)
219 PF11290 DUF3090: Protein of u 29.8 28 0.00061 23.8 1.0 16 113-128 153-168 (171)
220 PRK00398 rpoP DNA-directed RNA 29.2 32 0.00069 17.7 1.0 12 115-126 22-33 (46)
221 KOG1244 Predicted transcriptio 28.4 13 0.00028 27.5 -0.9 46 78-124 283-332 (336)
222 PF13894 zf-C2H2_4: C2H2-type 28.3 26 0.00056 14.5 0.4 9 116-124 2-10 (24)
223 KOG2462 C2H2-type Zn-finger pr 28.1 23 0.00049 26.1 0.3 29 96-124 186-225 (279)
224 PF09538 FYDLN_acid: Protein o 27.6 23 0.00049 22.3 0.2 9 116-124 28-36 (108)
225 PF13465 zf-H2C2_2: Zinc-finge 27.2 26 0.00056 15.7 0.3 9 116-124 16-24 (26)
226 PF06937 EURL: EURL protein; 26.7 58 0.0013 24.0 2.2 46 74-119 28-75 (285)
227 COG2816 NPY1 NTP pyrophosphohy 26.6 17 0.00036 26.9 -0.6 27 98-124 109-139 (279)
228 COG4306 Uncharacterized protei 26.0 33 0.00071 22.4 0.7 21 101-124 29-49 (160)
229 PF12292 DUF3624: Protein of u 25.7 19 0.0004 21.3 -0.4 21 103-123 3-24 (77)
230 COG3809 Uncharacterized protei 25.6 32 0.0007 20.4 0.6 10 116-125 23-32 (88)
231 PF13771 zf-HC5HC2H: PHD-like 25.6 34 0.00074 20.1 0.7 34 75-109 35-68 (90)
232 TIGR03847 conserved hypothetic 25.2 38 0.00082 23.3 1.0 17 112-128 154-170 (177)
233 PF06677 Auto_anti-p27: Sjogre 24.7 55 0.0012 16.8 1.3 18 108-125 11-28 (41)
234 PF15353 HECA: Headcase protei 24.7 50 0.0011 20.8 1.3 15 97-111 39-53 (107)
235 KOG1538 Uncharacterized conser 24.5 33 0.00072 28.8 0.7 14 112-125 1064-1077(1081)
236 COG4357 Zinc finger domain con 24.1 52 0.0011 20.4 1.3 13 114-126 80-92 (105)
237 COG3357 Predicted transcriptio 23.9 33 0.00071 21.0 0.4 27 94-124 60-86 (97)
238 KOG4443 Putative transcription 23.9 46 0.00099 27.7 1.3 47 76-122 18-70 (694)
239 KOG1356 Putative transcription 23.6 28 0.0006 29.7 0.1 48 73-122 226-279 (889)
240 PF05353 Atracotoxin: Delta At 23.5 5.7 0.00012 20.2 -2.4 15 104-118 18-32 (42)
241 PF12088 DUF3565: Protein of u 23.4 41 0.00088 18.9 0.7 13 93-105 12-24 (61)
242 KOG3623 Homeobox transcription 23.1 51 0.0011 28.0 1.5 32 97-128 286-323 (1007)
243 KOG4021 Mitochondrial ribosoma 23.0 49 0.0011 23.3 1.2 21 104-124 97-118 (239)
244 KOG1973 Chromatin remodeling p 22.8 21 0.00045 26.2 -0.7 28 98-125 240-270 (274)
245 PF12660 zf-TFIIIC: Putative z 22.4 20 0.00044 22.0 -0.7 48 77-124 15-65 (99)
246 KOG2113 Predicted RNA binding 22.4 25 0.00054 26.6 -0.3 47 73-123 133-181 (394)
247 PF05191 ADK_lid: Adenylate ki 22.0 29 0.00062 17.2 -0.1 28 96-125 5-32 (36)
248 PF10764 Gin: Inhibitor of sig 22.0 1.2E+02 0.0026 15.9 2.3 32 78-114 1-32 (46)
249 COG5082 AIR1 Arginine methyltr 21.7 80 0.0017 22.0 2.0 32 72-111 56-87 (190)
250 KOG2272 Focal adhesion protein 21.6 48 0.001 24.3 1.0 52 69-124 176-231 (332)
251 PF05417 Peptidase_C41: Hepati 21.5 39 0.00084 22.2 0.4 16 100-117 37-52 (161)
252 PRK08351 DNA-directed RNA poly 21.1 36 0.00077 19.2 0.2 10 113-122 14-23 (61)
253 PRK00241 nudC NADH pyrophospha 20.9 65 0.0014 23.3 1.6 18 107-124 92-109 (256)
254 KOG4323 Polycomb-like PHD Zn-f 20.8 51 0.0011 26.2 1.0 47 76-122 168-223 (464)
255 COG4338 Uncharacterized protei 20.6 34 0.00073 18.3 0.0 9 116-124 14-22 (54)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=3.7e-17 Score=87.50 Aligned_cols=43 Identities=49% Similarity=1.211 Sum_probs=38.3
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
+|+||++.+.. +..+..++|||.||.+||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999987 55667889999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.3e-15 Score=108.32 Aligned_cols=47 Identities=34% Similarity=1.029 Sum_probs=41.2
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCcc-ccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNS-CPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~-CP~Cr~~~ 124 (128)
..|+||+++|.. ++.++.|||+|.||..||++||.+.++ ||+||...
T Consensus 230 ~~CaIClEdY~~-GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEK-GDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeeccccc-CCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 489999999999 556677999999999999999987765 99998754
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.47 E-value=4.8e-14 Score=83.16 Aligned_cols=46 Identities=43% Similarity=1.099 Sum_probs=36.5
Q ss_pred ccccccccccccCC---------CCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 76 EGVCMVCMEDFDPQ---------EFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 76 ~~~C~IC~~~~~~~---------~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
+..|+||++.+..+ +..+...+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999432 23445668999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.45 E-value=7.1e-14 Score=98.92 Aligned_cols=52 Identities=38% Similarity=0.892 Sum_probs=42.6
Q ss_pred CCccccccccccccCCC----CCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQE----FPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..+.+|+||++.+..+. ....+++|+|.||..||.+|++.+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 44678999999986532 12356689999999999999999999999998764
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.5e-13 Score=101.29 Aligned_cols=52 Identities=29% Similarity=0.991 Sum_probs=44.3
Q ss_pred CCCccccccccccccCC---------CCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 73 GTTEGVCMVCMEDFDPQ---------EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~---------~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
...+..|.|||+++-.+ +...+++||||.+|..|++.|+.++.+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46778999999995332 24558999999999999999999999999999985
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.7e-13 Score=96.92 Aligned_cols=50 Identities=32% Similarity=0.811 Sum_probs=44.6
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+....|.+|++....| ..+||||.||+.||..|...+..||+||.++..
T Consensus 236 ~~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 35668899999998776 789999999999999999999999999998764
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.37 E-value=3.3e-13 Score=73.99 Aligned_cols=46 Identities=28% Similarity=0.779 Sum_probs=39.2
Q ss_pred ccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+..|.||++.... ...+||||. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998665 488899999 999999999999999999999874
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.37 E-value=4.9e-13 Score=91.40 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc----------------CccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL----------------SNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----------------~~~CP~Cr~~~~ 125 (128)
.+..+|+||++.+..+ ..++|||.||+.||..|+.. ...||+||+.+.
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4568899999998775 77899999999999999842 247999998774
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.32 E-value=1.2e-12 Score=69.07 Aligned_cols=38 Identities=34% Similarity=0.923 Sum_probs=30.1
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----cccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~C 120 (128)
|+||++.|..| +.++|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 999999999999999999644 369987
No 10
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.1e-13 Score=95.44 Aligned_cols=51 Identities=35% Similarity=0.851 Sum_probs=43.8
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
....+|+|||+.|.. .+..+.+||.|.||..|+.+|+. .+..||+||.++.
T Consensus 321 ~~GveCaICms~fiK-~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIK-NDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcc-cceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 344789999999976 45578999999999999999997 6778999998764
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.30 E-value=2.8e-12 Score=76.71 Aligned_cols=52 Identities=35% Similarity=0.793 Sum_probs=40.2
Q ss_pred ccccccccccccCC--------C-CCCeEcCCCCcccHhhHHHHhcc---CccccccCcceeeC
Q 033086 76 EGVCMVCMEDFDPQ--------E-FPGKQVPCGHVFHAKCISTWISL---SNSCPVCRSRCIIS 127 (128)
Q Consensus 76 ~~~C~IC~~~~~~~--------~-~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~~~ 127 (128)
+..|.||...|... + ..+..-.|+|.||..||.+|+.. +.+||+||+++.+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 66799998888621 1 23345579999999999999974 35899999998764
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-12 Score=90.59 Aligned_cols=50 Identities=28% Similarity=0.683 Sum_probs=41.8
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc---CccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL---SNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~~ 126 (128)
....++|.|||+.-+++ +++.|||.||+.||.+|+.. ++.||+|+..+..
T Consensus 44 ~~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 46778999999997776 88889999999999999963 3469999987643
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.2e-12 Score=87.81 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=43.8
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+..+.|+|||+.+... ....+.|||+||..||+..++....||+||+++..
T Consensus 128 ~~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 35567899999999763 33557899999999999999999999999987653
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.28 E-value=1.7e-12 Score=67.51 Aligned_cols=39 Identities=33% Similarity=1.010 Sum_probs=33.1
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccCcccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~C 120 (128)
|+||++.+..+ ...++|||.||..|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998774 3689999999999999999888899997
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.20 E-value=1.1e-11 Score=65.59 Aligned_cols=44 Identities=43% Similarity=1.160 Sum_probs=36.0
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-CccccccCcce
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SNSCPVCRSRC 124 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 124 (128)
+|+||++.+.. .....+|||.||..|+..|+.. ...||+||+.+
T Consensus 1 ~C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC---ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999843 2355569999999999999987 67899999753
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=99.19 E-value=1.3e-11 Score=85.67 Aligned_cols=52 Identities=31% Similarity=0.793 Sum_probs=39.6
Q ss_pred CCccccccccccccCC---C--CCCeEcCCCCcccHhhHHHHhccC------ccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQ---E--FPGKQVPCGHVFHAKCISTWISLS------NSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~--~~~~~~~C~H~f~~~Ci~~w~~~~------~~CP~Cr~~~~ 125 (128)
+.+.+|+|||+....+ . .-..+.+|+|.||..||..|.+.+ ++||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568899999986331 1 123567899999999999999643 36999998764
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.19 E-value=1.8e-11 Score=65.31 Aligned_cols=44 Identities=34% Similarity=0.884 Sum_probs=37.5
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
.|+||++.+.. .....+++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999933 456789999999999999999866678999985
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.18 E-value=2.1e-11 Score=69.64 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..|+||.+.+..| ..++|||+|++.||.+|++.+.+||+|++++.
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999886 78899999999999999988889999998774
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.16 E-value=2.1e-11 Score=63.93 Aligned_cols=39 Identities=38% Similarity=1.100 Sum_probs=33.8
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhc--cCcccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS--LSNSCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~C 120 (128)
|+||++.+..+ ...++|||.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~---~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP---VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE---EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC---CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998875 24899999999999999998 55589987
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=6.7e-11 Score=89.30 Aligned_cols=49 Identities=31% Similarity=0.625 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+....|+||++.|..+ ++++|||.||..||..|+.....||+||..+.
T Consensus 23 Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 35678999999999876 67899999999999999988889999998764
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.8e-11 Score=94.56 Aligned_cols=51 Identities=31% Similarity=1.057 Sum_probs=43.1
Q ss_pred CCccccccccccccCCC-CCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQE-FPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
..+..|+||++.+..+. ....+++|+|.||..|+..|++++.+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 44778999999997631 2358899999999999999999999999999743
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.07 E-value=9.4e-11 Score=61.96 Aligned_cols=39 Identities=41% Similarity=0.939 Sum_probs=23.9
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----cccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCP 118 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP 118 (128)
|+||.+ |..++...++|+|||+||.+||.+|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 87656667899999999999999999743 3676
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.03 E-value=2.2e-10 Score=58.54 Aligned_cols=38 Identities=39% Similarity=1.196 Sum_probs=32.0
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCcccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~C 120 (128)
|+||++.... ...++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988443 47889999999999999998 55679987
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.00 E-value=3.5e-10 Score=66.24 Aligned_cols=33 Identities=30% Similarity=0.790 Sum_probs=29.6
Q ss_pred eEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 94 KQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.--.|.|.||..||.+||..++.||++|+++.+
T Consensus 50 ~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred EEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 344699999999999999999999999999875
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.8e-10 Score=80.07 Aligned_cols=49 Identities=29% Similarity=0.845 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHH-HhccCcc-ccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST-WISLSNS-CPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~-w~~~~~~-CP~Cr~~~~~ 126 (128)
..+..|.||++....+ ..++|||+||..||.. |-+++.- ||+||+...+
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 5678899999997765 8899999999999998 8877765 9999997764
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.1e-10 Score=64.00 Aligned_cols=51 Identities=33% Similarity=0.729 Sum_probs=37.8
Q ss_pred cccccccccccC--------CCC-CCeEcCCCCcccHhhHHHHhc---cCccccccCcceeeC
Q 033086 77 GVCMVCMEDFDP--------QEF-PGKQVPCGHVFHAKCISTWIS---LSNSCPVCRSRCIIS 127 (128)
Q Consensus 77 ~~C~IC~~~~~~--------~~~-~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~~~~~ 127 (128)
.+|.||.-.|.. ++. ....-.|.|.||..||.+|+. ++..||+||+.+.+.
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 378999888853 122 223335999999999999996 334799999998764
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.85 E-value=8.7e-10 Score=80.82 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=43.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+.-..|.||.+.|..+ .++||+|.||..||...|..+..||.|+.++.
T Consensus 21 D~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 4567899999999987 88999999999999999999999999997664
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-09 Score=83.40 Aligned_cols=47 Identities=34% Similarity=0.810 Sum_probs=38.5
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC-----ccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS-----NSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~~ 126 (128)
+..||||+++...+ .++.|||+||..||...+... ..||+||..+.+
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 77899999997664 677799999999998877533 479999987754
No 29
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-09 Score=78.01 Aligned_cols=61 Identities=33% Similarity=0.749 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCccccccccccccCCC------CCCeEcCCCCcccHhhHHHHh--ccCccccccCcceeeC
Q 033086 64 SDLPTGAGSGTTEGVCMVCMEDFDPQE------FPGKQVPCGHVFHAKCISTWI--SLSNSCPVCRSRCIIS 127 (128)
Q Consensus 64 ~~l~~~~~~~~~~~~C~IC~~~~~~~~------~~~~~~~C~H~f~~~Ci~~w~--~~~~~CP~Cr~~~~~~ 127 (128)
+.+|+.. .++..|+||-..+.... +....+.|+|+||..||..|. .++.+||.|+++++++
T Consensus 215 ~glPtkh---l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 215 SGLPTKH---LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCCC---CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 4455444 56778999998885421 244688999999999999997 4666999999988764
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.78 E-value=4.3e-09 Score=61.97 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=38.5
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-CccccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~ 126 (128)
+.+.|+|+.+.|..| +++++||+|.+.+|..|+.. ..+||++++++..
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 467899999999997 88999999999999999988 7899999987653
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.77 E-value=1.5e-09 Score=63.46 Aligned_cols=52 Identities=31% Similarity=0.538 Sum_probs=25.1
Q ss_pred ccccccccccccCCCCCC--e--EcCCCCcccHhhHHHHhcc---C--------ccccccCcceeeC
Q 033086 76 EGVCMVCMEDFDPQEFPG--K--QVPCGHVFHAKCISTWISL---S--------NSCPVCRSRCIIS 127 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~--~--~~~C~H~f~~~Ci~~w~~~---~--------~~CP~Cr~~~~~~ 127 (128)
+..|.||+..+...+... . ...|+..||..||..||.. . +.||.|++++.++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 457999999876322221 1 1268999999999999952 1 2699999998764
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.76 E-value=3.5e-09 Score=76.29 Aligned_cols=47 Identities=28% Similarity=0.610 Sum_probs=42.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
+.-..|.||-+.|..+ ..++|||.||..||...|..+..||+||.++
T Consensus 23 Ds~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 4556799999999887 8899999999999999999999999999865
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.66 E-value=9.3e-09 Score=77.76 Aligned_cols=48 Identities=38% Similarity=0.836 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 123 (128)
.+..+|+||++.+.....-+..+.|.|.||..|+.+| ...+||+||.-
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~ 220 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYC 220 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhh
Confidence 5667899999999875455677789999999999999 45689999953
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=2e-08 Score=73.49 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=36.4
Q ss_pred ccccccccccc-cCCCCCCeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 76 EGVCMVCMEDF-DPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 76 ~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
+..||+|...- ..+.....+.+|||.||..|+...+ .....||.|++++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 45799999963 2323233333899999999999966 45568999998764
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-08 Score=73.93 Aligned_cols=44 Identities=39% Similarity=0.831 Sum_probs=39.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
.+...|+||++.|..+ .+++|+|.||..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 5678899999999987 8899999999999999988555899999
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.55 E-value=5.8e-08 Score=52.77 Aligned_cols=42 Identities=29% Similarity=0.825 Sum_probs=31.7
Q ss_pred ccccccccccCCCCCCeEcCCC-----CcccHhhHHHHhccC--ccccccC
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCG-----HVFHAKCISTWISLS--NSCPVCR 121 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr 121 (128)
.|.||++ ... +......||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889998 322 3344678985 789999999999544 4899995
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.4e-08 Score=76.45 Aligned_cols=52 Identities=31% Similarity=0.793 Sum_probs=39.8
Q ss_pred CCccccccccccccCCC----C---------CCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQE----F---------PGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~----~---------~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
+....|+|||.++.... . ....+||.|+||..|+..|+. .+-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45668999999985321 0 124569999999999999998 4558999998763
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.48 E-value=3.1e-08 Score=80.79 Aligned_cols=53 Identities=26% Similarity=0.707 Sum_probs=39.3
Q ss_pred CCCccccccccccccCCCC---CCeEcCCCCcccHhhHHHHhccC--ccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEF---PGKQVPCGHVFHAKCISTWISLS--NSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~---~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 125 (128)
-++..+|+||...+..-+. .-+...|.|.||..|+.+|++.+ .+||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3567789999988862111 11334599999999999999754 48999998764
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.3e-08 Score=59.25 Aligned_cols=31 Identities=35% Similarity=0.878 Sum_probs=28.4
Q ss_pred cCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 96 VPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 96 ~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
-.|.|.||..||.+|++++..||+|.+++.+
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3599999999999999999999999988765
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-07 Score=69.70 Aligned_cols=48 Identities=23% Similarity=0.675 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+...+|.||+.+... ..+|||.|. .|..|.+...-+++.||+||+++.
T Consensus 288 ~~gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 446789999999665 389999995 899999888778889999999764
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4e-08 Score=72.45 Aligned_cols=50 Identities=24% Similarity=0.542 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
...+..|+||++.++.- .....|.|.||.+||...++ ..+.||.||+.+.
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 35677899999998763 45667999999999998886 5558999999764
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.32 E-value=1.8e-07 Score=75.12 Aligned_cols=52 Identities=21% Similarity=0.564 Sum_probs=43.7
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
......|++|+..+.. .......+|+|.||..||..|-+...+||+||..|.
T Consensus 120 ~~~~~~CP~Ci~s~~D-qL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCND-QLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhhHHHHHHHH-HhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 4566789999999866 444566789999999999999999999999998763
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.3e-07 Score=67.21 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=39.0
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 126 (128)
...+|+||+...--| ..++|+|.||+.||+.-....+ +|++||.+++.
T Consensus 6 ~~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 345799999886554 8899999999999987765554 69999998753
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.27 E-value=2.2e-07 Score=52.62 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=23.4
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
....|++|.+.+..| +.+..|.|.||..||..-+.. .||+|+.+-
T Consensus 6 ~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-
T ss_pred HhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCC--CCCCcCChH
Confidence 345699999999886 356789999999999775543 499998764
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.3e-07 Score=50.65 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=36.0
Q ss_pred CccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhc-cCccccccCcce
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWIS-LSNSCPVCRSRC 124 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~-~~~~CP~Cr~~~ 124 (128)
...+|-||++..... ++-.|||. .|..|-.+.++ .+..||+||+++
T Consensus 6 ~~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 347899999886553 55679995 89999777665 777999999875
No 46
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.4e-07 Score=67.36 Aligned_cols=44 Identities=27% Similarity=0.908 Sum_probs=32.4
Q ss_pred cccccccccccCCCCCC-eEcCCCCcccHhhHHHHhccC---ccccccC
Q 033086 77 GVCMVCMEDFDPQEFPG-KQVPCGHVFHAKCISTWISLS---NSCPVCR 121 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr 121 (128)
..|.||-+.+.. +... .+-.|||+||..|+..|+... ++||+||
T Consensus 5 A~C~Ic~d~~p~-~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPN-DHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCcc-ccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 469999544443 3333 344599999999999999643 5799998
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.8e-07 Score=73.77 Aligned_cols=48 Identities=27% Similarity=0.590 Sum_probs=39.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
.+-..|++|...+..- ++..|+|.||..|+...+. +.+.||.|.+.|-
T Consensus 641 K~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3456799999877663 7778999999999999885 6678999998774
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=66.91 Aligned_cols=48 Identities=31% Similarity=0.800 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..++.|.||+..+..+ +.+||||.||..||++-+.....||.||..+.
T Consensus 82 ~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 5678999999998886 77899999999999998888889999998764
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.12 E-value=6.6e-07 Score=67.27 Aligned_cols=49 Identities=37% Similarity=0.984 Sum_probs=39.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--CccccccCcceeeCC
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--SNSCPVCRSRCIISG 128 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~~~g 128 (128)
..-..|.||-+. +..+++-||||..|..|+..|-.. ..+||.|| ..++|
T Consensus 367 sTFeLCKICaen----dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCR--cEIKG 417 (563)
T KOG1785|consen 367 STFELCKICAEN----DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCR--CEIKG 417 (563)
T ss_pred chHHHHHHhhcc----CCCcccccccchHHHHHHHhhcccCCCCCCCcee--eEecc
Confidence 444569999877 556788999999999999999743 45899999 55554
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=65.13 Aligned_cols=52 Identities=35% Similarity=0.758 Sum_probs=38.8
Q ss_pred CCccccccccccccCCC-C---CCeEcCCCCcccHhhHHHHh--cc-----CccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQE-F---PGKQVPCGHVFHAKCISTWI--SL-----SNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~-~---~~~~~~C~H~f~~~Ci~~w~--~~-----~~~CP~Cr~~~~ 125 (128)
..+.+|.|||+...... . -....+|.|.||..||..|- ++ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56789999999985531 0 11235699999999999998 34 468999996543
No 51
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=98.08 E-value=3.6e-06 Score=45.17 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=24.8
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
|++|.+++...+....-=+||..+|..|....+. ..+.||-||+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 7899999966554444456899999999999886 5779999998863
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.8e-06 Score=63.30 Aligned_cols=49 Identities=24% Similarity=0.848 Sum_probs=38.6
Q ss_pred CccccccccccccCCC-CCCeEcCCCCcccHhhHHHHhcc--CccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQE-FPGKQVPCGHVFHAKCISTWISL--SNSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~ 123 (128)
...+|+||++.+..++ ..+..+.|||.|...||.+|+.+ ...||.|..+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 4568999999996554 44567789999999999999952 2369999653
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.96 E-value=2.2e-06 Score=64.28 Aligned_cols=49 Identities=33% Similarity=0.747 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC--ccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS--NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~ 122 (128)
+.+..|..|-+.+...++....+||.|+||..|+...+.++ ++||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34567999999997767777899999999999999998544 48999995
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-05 Score=58.05 Aligned_cols=51 Identities=31% Similarity=0.568 Sum_probs=40.4
Q ss_pred CCCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--CccccccCccee
Q 033086 72 SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--SNSCPVCRSRCI 125 (128)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 125 (128)
......+|++|-+....| ....+|+|+||+.|+..-+.. ..+||.|.....
T Consensus 235 ~~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 356778999999887665 456679999999999877653 479999987654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.88 E-value=1e-05 Score=45.22 Aligned_cols=43 Identities=33% Similarity=0.653 Sum_probs=29.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--Cccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--SNSCPV 119 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~ 119 (128)
.....|||.+..|..| +....|+|+|-+..|..|++. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4457899999999886 455689999999999999943 447998
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.81 E-value=1.1e-05 Score=61.51 Aligned_cols=49 Identities=33% Similarity=0.672 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCCCCCeE-cCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQ-VPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.++...|++|...+..+ .. ..|||.||..|+..|+..+..||.|+....
T Consensus 18 ~~~~l~C~~C~~vl~~p----~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP----VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC----CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 46778999999999886 33 589999999999999999999999987654
No 57
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.61 E-value=2.1e-05 Score=57.32 Aligned_cols=37 Identities=22% Similarity=0.673 Sum_probs=30.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
....+|.|||--|.. .....+++|-|.||..|+.+.|
T Consensus 113 ~p~gqCvICLygfa~-~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 113 HPNGQCVICLYGFAS-SPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCCCceEEEEEeecC-CCceeeehhHHHHHHHHHHHHH
Confidence 455679999999987 4556788999999999997654
No 58
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=6.2e-05 Score=55.26 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=40.7
Q ss_pred cccccccccccCC--CCCCeEcCCCCcccHhhHHHHhccCc-cccccCcceee
Q 033086 77 GVCMVCMEDFDPQ--EFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 126 (128)
..|-||-++|... +...+.+.|||.||..|+.+.+.... .||.||.+..+
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 5699999999654 45668889999999999988876554 79999987544
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.56 E-value=1.3e-05 Score=58.97 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=39.2
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 123 (128)
....+|.+|-..|... -.+..|-|.||..||.+.+....+||+|.-.
T Consensus 13 n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ 59 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIV 59 (331)
T ss_pred ccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCcccee
Confidence 3556899999998764 2455799999999999999999999999843
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.54 E-value=0.0001 Score=49.17 Aligned_cols=49 Identities=27% Similarity=0.777 Sum_probs=36.1
Q ss_pred CCCccccccccccccCCCCCCeEcCCCC-----cccHhhHHHHhccCc--cccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGH-----VFHAKCISTWISLSN--SCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H-----~f~~~Ci~~w~~~~~--~CP~Cr~~~~~ 126 (128)
...+..|-||.+.-.. ...||.. ..|+.|+.+|+..++ .|++|+.++.+
T Consensus 5 s~~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3566789999887432 2246644 569999999997544 79999998865
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.53 E-value=3.4e-05 Score=53.19 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=39.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 123 (128)
.-.+.|.||-.+|..| +...|||.||..|..+-++....|-+|-+.
T Consensus 194 ~IPF~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 194 KIPFLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred CCceeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 3456899999999887 788899999999999888888899999653
No 62
>PHA02862 5L protein; Provisional
Probab=97.52 E-value=9.5e-05 Score=48.46 Aligned_cols=45 Identities=33% Similarity=0.909 Sum_probs=33.8
Q ss_pred cccccccccccCCCCCCeEcCCC-----CcccHhhHHHHhccC--ccccccCcceee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCG-----HVFHAKCISTWISLS--NSCPVCRSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~~ 126 (128)
..|-||.+.-.+. .-||. ...|+.|+.+|++.+ ..|++|+.++.+
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4699999885331 35664 358999999999744 479999998865
No 63
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00014 Score=49.35 Aligned_cols=53 Identities=25% Similarity=0.666 Sum_probs=36.9
Q ss_pred CccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhcc------C-----ccccccCcceeeC
Q 033086 75 TEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISL------S-----NSCPVCRSRCIIS 127 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~------~-----~~CP~Cr~~~~~~ 127 (128)
+...|.||+..--.+ +++--...||..||+-|+..||+. + +.||.|.+++.++
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 445677777654222 333345679999999999999962 2 2699999987653
No 64
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.31 E-value=0.00016 Score=53.71 Aligned_cols=53 Identities=26% Similarity=0.555 Sum_probs=40.6
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
.+++..|+.|++++...+....--+||-..|+-|....-. -+++||-||+.++
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3555669999999988666667778999889888765542 3568999998764
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.29 E-value=0.00014 Score=62.70 Aligned_cols=54 Identities=28% Similarity=0.808 Sum_probs=40.5
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHH-----HhccC-----ccccccCcceeeC
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST-----WISLS-----NSCPVCRSRCIIS 127 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~-----w~~~~-----~~CP~Cr~~~~~~ 127 (128)
.+.+..|.||+.+--. ......+.|+|.||..|..+ |+... -.||+|+.++...
T Consensus 3483 QD~DDmCmICFTE~L~-AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS-AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cccCceEEEEehhhhC-CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 5677889999988644 44567889999999999975 44322 2799999887543
No 66
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=9.5e-05 Score=53.77 Aligned_cols=45 Identities=24% Similarity=0.520 Sum_probs=39.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.+.|-||..+|..| ++..|+|.||..|...-++....|.+|-+..
T Consensus 241 Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccc
Confidence 35699999999987 8889999999999988888888999997654
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00028 Score=50.23 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
+..+.|+||.+.+..-...+.+.+|||+|+.+|+.+.++....||+|-+++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 356789999999987556677889999999999999999999999998765
No 68
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.14 E-value=0.00039 Score=50.37 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
....+.|||....|.....-+.+.+|||+|...++...- ....||+|-++|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 466789999999995533455677999999999999873 3567999998875
No 69
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=7.1e-05 Score=54.41 Aligned_cols=41 Identities=32% Similarity=0.734 Sum_probs=32.4
Q ss_pred ccccccccccccCCCCCCeEcCCCC-cccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGH-VFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
...|.|||+.... -+.|+||| +-|.+|-.++- .||+||+.+
T Consensus 300 ~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm~----eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRD----CVFLECGHMVTCTKCGKRMN----ECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcc----eEEeecCcEEeehhhccccc----cCchHHHHH
Confidence 6789999988655 37899999 57889975542 799999854
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.13 E-value=0.0002 Score=56.09 Aligned_cols=53 Identities=25% Similarity=0.536 Sum_probs=40.7
Q ss_pred CCCCCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-----cCccccccCcceee
Q 033086 70 AGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-----LSNSCPVCRSRCII 126 (128)
Q Consensus 70 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~~ 126 (128)
.....+...|.+|-++-+. .....|.|.||+.|+..++. .+-+||+|-..+.+
T Consensus 530 ~~enk~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CccccCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3445677889999988555 37789999999999988764 33489999876644
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00033 Score=52.34 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.++..|+||...... +...||+|.-|+.||.+.+.+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 577889999876544 377899999999999999999999999987553
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.01 E-value=0.00034 Score=51.19 Aligned_cols=47 Identities=30% Similarity=0.611 Sum_probs=36.0
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHh-ccCcccccc-Ccceee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SLSNSCPVC-RSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~C-r~~~~~ 126 (128)
..|+.|-..+..+ ..+..|+|.||.+||...| ...+.||.| |+.+.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 6799999888775 2334689999999998766 577899999 444443
No 73
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.97 E-value=0.00063 Score=36.45 Aligned_cols=40 Identities=30% Similarity=0.860 Sum_probs=26.0
Q ss_pred cccccccccCCCCCCeEcCCCC-----cccHhhHHHHhc--cCcccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGH-----VFHAKCISTWIS--LSNSCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H-----~f~~~Ci~~w~~--~~~~CP~C 120 (128)
|-||++.-...+ ....||.- ..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678988876532 46677742 579999999996 44579887
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00045 Score=52.44 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=31.2
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
....|.||++.... ......+||+|+||..|+...+.
T Consensus 183 slf~C~ICf~e~~G-~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMG-QHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcC-cceeeecccchHHHHHHHHHHHH
Confidence 34679999999765 56778999999999999998874
No 75
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.88 E-value=0.00034 Score=43.59 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=27.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIS 108 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 108 (128)
.....|++|-..+..+ .....||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~--~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS--VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc--eEEEeCCCeEEeccccc
Confidence 5567799999998763 56788999999999975
No 76
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.0007 Score=49.23 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=39.8
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
.-||||.+.+......+..++|||..|..|+.......-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3399999999776667788999999999999998877789999977
No 77
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00095 Score=47.04 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=38.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--------CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--------SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~Cr~~~~~ 126 (128)
+...-|..|-..+..+ + ...+.|-|.||++|+..|-.+ .-.||.|..++..
T Consensus 48 DY~pNC~LC~t~La~g-d-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASG-D-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCCceeCCccccC-c-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4455699999888774 2 356779999999999999742 1269999877653
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.81 E-value=0.00055 Score=37.64 Aligned_cols=45 Identities=29% Similarity=0.650 Sum_probs=32.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
...|..|... +.+..+++|||..|..|..-+ .-+-||+|-++++.
T Consensus 7 ~~~~~~~~~~----~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV----GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc----ccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 3446666554 234488999999999996554 44579999988864
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.75 E-value=0.00071 Score=55.46 Aligned_cols=50 Identities=34% Similarity=0.688 Sum_probs=37.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC-------ccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS-------NSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-------~~CP~Cr~~ 123 (128)
...++|.||.+.+.....+-.-..|-|+||..||..|-+.. -.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 45678999999986533333344588999999999998632 169999843
No 80
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.73 E-value=0.00082 Score=43.71 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=31.5
Q ss_pred ccccccccccccCCCCCCeEcCCC------CcccHhhHHHHhccCccccccC
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCG------HVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~------H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
..+|.||++.+... .-++.++|| |.||..|+.+|-+..++=|.=|
T Consensus 26 ~~EC~IC~~~I~~~-~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNN-DGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcC-CCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 56799999999772 223444554 7899999999965555555443
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00071 Score=47.99 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=31.9
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..|..|..--. .....++.|+|+||..|...- ....||+||+++.
T Consensus 4 VhCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPS--QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCC--CCceeeeechhhhhhhhcccC--Cccccccccceee
Confidence 35777765544 345678899999999997543 2228999998753
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0012 Score=48.73 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSR 123 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 123 (128)
......|+||+.....+ -+...-|-+||+.|+...+++.+.||+=..+
T Consensus 297 ~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34567899999998876 2334469999999999999999999985443
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.00088 Score=54.94 Aligned_cols=41 Identities=27% Similarity=0.724 Sum_probs=34.3
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
...|..|-..++.| .+...|||.||+.|+. .+...||.|+-
T Consensus 840 ~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP---FVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccc---eeeeecccHHHHHhhc---cCcccCCccch
Confidence 46799999998886 4677899999999997 45668999985
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.58 E-value=0.0019 Score=48.32 Aligned_cols=49 Identities=22% Similarity=0.610 Sum_probs=38.7
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHH--HhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST--WISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~--w~~~~~~CP~Cr~~~~ 125 (128)
.++...|.||.+.+.-. .++||+|..|--|..+ .|..++.||+||..+.
T Consensus 58 DEen~~C~ICA~~~TYs----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYS----ARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEE----EeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34556799999887653 7899999999999764 4567889999998763
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.53 E-value=0.0036 Score=32.88 Aligned_cols=41 Identities=22% Similarity=0.621 Sum_probs=21.6
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc--ccccc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN--SCPVC 120 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~C 120 (128)
|.+|.+....+. .-....|+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~-~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQ-RCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSE-E-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeec-cCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766541 101124888999999999997665 79987
No 86
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0025 Score=47.67 Aligned_cols=46 Identities=35% Similarity=0.750 Sum_probs=32.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
......|.||++.... ...+||||.-| |..-- +....||+||+.+.
T Consensus 302 ~~~p~lcVVcl~e~~~----~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS----AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc----eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 4556679999998655 47889999865 54322 23345999998764
No 87
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0015 Score=43.80 Aligned_cols=31 Identities=26% Similarity=0.742 Sum_probs=26.8
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccH
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHA 104 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 104 (128)
.+...+|.||++++.. +..+.+|||-.++|.
T Consensus 174 ~ddkGECvICLEdL~~-GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEA-GDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccC-CCceeccceEEEeec
Confidence 4667899999999998 678899999999885
No 88
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0026 Score=45.59 Aligned_cols=53 Identities=28% Similarity=0.702 Sum_probs=37.4
Q ss_pred CCCccccccccccccCCCCCCeEcCC-----CCcccHhhHHHHhccC--------ccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPC-----GHVFHAKCISTWISLS--------NSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C-----~H~f~~~Ci~~w~~~~--------~~CP~Cr~~~~ 125 (128)
.+.+..|-||+..-++.....-+-|| .|-.|..|+.+|+..+ -.||.|+..+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45667899999886553222245576 3668999999999532 16999998764
No 89
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0061 Score=46.20 Aligned_cols=47 Identities=26% Similarity=0.463 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC---ccccccC
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS---NSCPVCR 121 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr 121 (128)
...+.|||=.+.-.. +..+..+.|||+.+.+-+.+..++. ..||+|=
T Consensus 332 HSvF~CPVlKeqtsd-eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSD-ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred cceeecccchhhccC-CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 456789997777665 5677999999999999999998644 4799994
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0029 Score=46.59 Aligned_cols=43 Identities=30% Similarity=0.753 Sum_probs=31.4
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
-.|.-|--.+..- .+++||.|+||.+|... ...+.||.|-.++
T Consensus 91 HfCd~Cd~PI~IY---GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIY---GRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceee---ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 4577787666542 37889999999999643 3567899996544
No 91
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0069 Score=44.17 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=35.5
Q ss_pred ccccccccc-cCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCcce
Q 033086 78 VCMVCMEDF-DPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRC 124 (128)
Q Consensus 78 ~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~ 124 (128)
.|++|-... ..++-....-+|+|..|..|++..+. +...||-|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 488887665 34444555569999999999999985 555899997654
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.80 E-value=0.0048 Score=46.59 Aligned_cols=28 Identities=25% Similarity=0.927 Sum_probs=21.0
Q ss_pred CCCcccHhhHHHHhcc-------------CccccccCccee
Q 033086 98 CGHVFHAKCISTWISL-------------SNSCPVCRSRCI 125 (128)
Q Consensus 98 C~H~f~~~Ci~~w~~~-------------~~~CP~Cr~~~~ 125 (128)
|....|.+|+.+|+.. +-.||+||++|=
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4556788999998842 237999999874
No 93
>PHA03096 p28-like protein; Provisional
Probab=95.43 E-value=0.0094 Score=43.77 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=31.4
Q ss_pred cccccccccccCCC----CCCeEcCCCCcccHhhHHHHhccC---ccccccCc
Q 033086 77 GVCMVCMEDFDPQE----FPGKQVPCGHVFHAKCISTWISLS---NSCPVCRS 122 (128)
Q Consensus 77 ~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr~ 122 (128)
..|.||++...... .-..+..|.|.||..|+..|-... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56999999875421 111344699999999999998532 34555553
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.19 E-value=0.0082 Score=48.98 Aligned_cols=43 Identities=33% Similarity=0.763 Sum_probs=34.0
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc--cccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN--SCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~~~ 124 (128)
..|.||++ .. .....+|+|.||..|+..-+.... .||.||..+
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 22 247788999999999988775433 699999754
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.19 E-value=0.022 Score=30.37 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCeEcCC-CCcccHhhHHHHhccCccccccCccee
Q 033086 78 VCMVCMEDFDPQEFPGKQVPC-GHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
-|.-|+-.... ...| .|..|..|+..++..+..||+|.+++.
T Consensus 4 nCKsCWf~~k~------Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKG------LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SS------EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhcCCC------eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 35566644322 3346 689999999999999999999998764
No 96
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.04 E-value=0.015 Score=37.80 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=36.9
Q ss_pred CccccccccccccCCCCCCeEcC---CCCcccHhhHHHHhcc---CccccccCcceeeC
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVP---CGHVFHAKCISTWISL---SNSCPVCRSRCIIS 127 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~---C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~~~ 127 (128)
...+|.||.+...+. ..+-| ||-..|..|-...++. ...||.|+.+|..+
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 567899999886553 23333 8999999998776654 44799999888654
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.013 Score=48.63 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
.+....|.+|...+... .-.+.+|||.||+.|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC--cceeeeccchHHHHHHHHHH
Confidence 46677899999998652 44678999999999997654
No 98
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.78 E-value=0.018 Score=44.47 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=31.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL 113 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~ 113 (128)
+++..|+||..-|.+| ++++|+|..|+.|....+.+
T Consensus 2 eeelkc~vc~~f~~ep----iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP----IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc----eEeecccHHHHHHHHhhccc
Confidence 4677899999999887 99999999999998876643
No 99
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.001 Score=50.24 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.....|.||...+...-.....+.|||..|..||.+|+.....||.||+.+..
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45567999999986631233456799999999999999888899999987754
No 100
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.65 E-value=0.026 Score=41.82 Aligned_cols=44 Identities=32% Similarity=0.725 Sum_probs=34.0
Q ss_pred CCCccccccccccccCCCCCCeEcCC--CCcccHhhHHHHhccCccccccCcce
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPC--GHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
..+-.+||||...+..| ...| ||..|..|-.+ ....||.||.++
T Consensus 45 ~~~lleCPvC~~~l~~P-----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP-----IFQCDNGHLACSSCRTK---VSNKCPTCRLPI 90 (299)
T ss_pred chhhccCchhhccCccc-----ceecCCCcEehhhhhhh---hcccCCcccccc
Confidence 35667899999999886 3456 89999998653 466799999765
No 101
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.62 E-value=0.01 Score=32.12 Aligned_cols=43 Identities=14% Similarity=0.409 Sum_probs=21.4
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-----CccccccCcc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-----SNSCPVCRSR 123 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 123 (128)
..|+|....+..| ++...|.|.-|.+ +..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P---~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP---VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE---EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC---ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3588888888775 5777899987665 4445431 1269999864
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.55 E-value=0.0096 Score=42.49 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=35.3
Q ss_pred Ccccccccccccc-CCCCCCeEcC-CCCcccHhhHHHHhccCc-ccc--ccCc
Q 033086 75 TEGVCMVCMEDFD-PQEFPGKQVP-CGHVFHAKCISTWISLSN-SCP--VCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~-~~~~~~~~~~-C~H~f~~~Ci~~w~~~~~-~CP--~Cr~ 122 (128)
.+..||||..+.- .|+-...+-| |-|..|..|+++.+.... .|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4557999988763 3444444456 999999999999997555 799 6654
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.025 Score=41.53 Aligned_cols=29 Identities=28% Similarity=0.705 Sum_probs=22.1
Q ss_pred CCCcccHhhHHHHhc-------------cCccccccCcceee
Q 033086 98 CGHVFHAKCISTWIS-------------LSNSCPVCRSRCII 126 (128)
Q Consensus 98 C~H~f~~~Ci~~w~~-------------~~~~CP~Cr~~~~~ 126 (128)
|....|..|+-+|+. ++-+||+||+.|-+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 566788999988873 33489999998743
No 104
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.20 E-value=0.043 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=21.0
Q ss_pred ccccccccccccCCCCCCeEcC------------CCCc-ccHhhHHHHh
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVP------------CGHV-FHAKCISTWI 111 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~------------C~H~-f~~~Ci~~w~ 111 (128)
+..|+|||+..... ++|- |+.. -|..|+++.-
T Consensus 2 d~~CpICme~PHNA----VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA----VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce----EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 56799999987653 4443 4443 3678988654
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.021 Score=40.07 Aligned_cols=38 Identities=34% Similarity=0.715 Sum_probs=28.5
Q ss_pred cccccccccCCCCCCeEcCCCC-cccHhhHHHHhccCccccccCcce
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGH-VFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
|-.|.+. ...+.++||.| .+|..|-.. -..||+|+.+.
T Consensus 161 Cr~C~~~----~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER----EATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC----CceEEeecccceEeccccccc----CccCCCCcChh
Confidence 8888877 44568999999 488899533 44699998643
No 106
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.88 E-value=0.016 Score=49.84 Aligned_cols=45 Identities=29% Similarity=0.764 Sum_probs=38.2
Q ss_pred CCcccccccccccc-CCCCCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 74 TTEGVCMVCMEDFD-PQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
.....|.||++.+. .+ .+..|||.+|..|...|+..+..||+|..
T Consensus 1151 ~~~~~c~ic~dil~~~~----~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG----GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcC----CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34457999999987 33 56679999999999999999999999974
No 107
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.80 E-value=0.06 Score=39.58 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=36.7
Q ss_pred CccccccccccccCCCCCCeEcCCC-----CcccHhhHHHHhc--cCccccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCG-----HVFHAKCISTWIS--LSNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~--~~~~CP~Cr~~~~~ 126 (128)
.+..|-||..+...........||. ...|..|+..|+. .+..|..|...+..
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 3578999999765422113556663 3579999999997 55589999876543
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.57 E-value=0.16 Score=27.95 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=33.8
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccc--cCcce
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPV--CRSRC 124 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~--Cr~~~ 124 (128)
....|++|-+.|..++..++-..||-.+|+.|-.+ ...|-+ |.+.+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCc
Confidence 45669999999986566777778999999999543 445555 55444
No 109
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.42 E-value=0.08 Score=43.65 Aligned_cols=28 Identities=32% Similarity=0.795 Sum_probs=23.9
Q ss_pred CCeEcCCCCcccHhhHHHHhccCccccc
Q 033086 92 PGKQVPCGHVFHAKCISTWISLSNSCPV 119 (128)
Q Consensus 92 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~ 119 (128)
......|+|+.|..|...|+...-.||.
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred chhhccccccccHHHHHHHHhcCCcCCC
Confidence 3456679999999999999998888884
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.14 E-value=0.036 Score=45.07 Aligned_cols=47 Identities=21% Similarity=0.617 Sum_probs=37.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc---CccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL---SNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~ 124 (128)
.-..+|+||+..+..+ ..+.|-|.|+..|+..-+.. ...||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 3456799999999886 78899999999998766543 34799998644
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.058 Score=41.35 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=27.7
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
...+|.||+......+.......|+|.||.+|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46789999944433233334678999999999997775
No 112
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.70 E-value=0.14 Score=38.27 Aligned_cols=49 Identities=29% Similarity=0.546 Sum_probs=39.7
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
...|+||.++....+....--+|++..|..|+......+.+||.||++.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 3679999998855455555667888889999988888999999999765
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.068 Score=43.25 Aligned_cols=41 Identities=27% Similarity=0.664 Sum_probs=31.9
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCcccc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCP 118 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP 118 (128)
...|.||+..|.......+-+.|||+.|..|+.... +.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 346999988886544556788899999999998774 45777
No 114
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.23 E-value=0.28 Score=40.92 Aligned_cols=52 Identities=21% Similarity=0.591 Sum_probs=37.3
Q ss_pred CCCccccccccccccCCCCCCeEcCCCC-----cccHhhHHHHhccC--ccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGH-----VFHAKCISTWISLS--NSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H-----~f~~~Ci~~w~~~~--~~CP~Cr~~~~~ 126 (128)
.+++..|.||..+=.. +.. ..-||.. ..|++|+.+|+..+ ..|-+|..++..
T Consensus 9 N~d~~~CRICr~e~~~-d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIR-DDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCC-CCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 4566889999987544 333 3336643 47999999999744 479999987764
No 115
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.57 E-value=0.36 Score=34.87 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=37.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
...+.|+|---+|...-.-....+|||+|-..-+.+. ....|++|.+.+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 4567899987777553233357789999999888776 4668999988764
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.13 E-value=0.46 Score=35.47 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=35.7
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC---ccccccC
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS---NSCPVCR 121 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr 121 (128)
-...+.||+--+.-.. ...+..+.|||+.-.+-+....++. +.||.|-
T Consensus 333 fHs~FiCPVlKe~~t~-ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 333 FHSLFICPVLKELCTD-ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ccceeeccccHhhhcc-cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3556789986665544 4566899999999999988876543 3799994
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.76 E-value=0.31 Score=40.56 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCCCeEcC---CCCcccHhhHHHHhccC------ccccccCc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVP---CGHVFHAKCISTWISLS------NSCPVCRS 122 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~---C~H~f~~~Ci~~w~~~~------~~CP~Cr~ 122 (128)
...|.+|..++..++.-.-..+ |+|.||..||..|..+- -.|++|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 3468888888876443334445 99999999999998532 25788854
No 118
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=86.97 E-value=1.1 Score=24.78 Aligned_cols=45 Identities=27% Similarity=0.643 Sum_probs=30.8
Q ss_pred cccccccccccCCCCCCeEcCCC--CcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCG--HVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~--H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..|-.|-.++......+.+ |. .+||.+|....| +..||.|...|.
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 3477777777653223333 54 479999999886 668999976654
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=86.40 E-value=0.46 Score=33.20 Aligned_cols=42 Identities=31% Similarity=0.750 Sum_probs=28.9
Q ss_pred CCcccccccccc-----ccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 74 TTEGVCMVCMED-----FDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 74 ~~~~~C~IC~~~-----~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
.....|.+|-.. |+. +.+.+-..|+..||..|.. +..||.|.
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 345678888752 222 3455666799999999964 26799994
No 120
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=85.98 E-value=0.94 Score=33.02 Aligned_cols=48 Identities=19% Similarity=0.515 Sum_probs=32.6
Q ss_pred cccccccccccCCCCCCe---EcCCCCcccHhhHHHHhc---------cCccccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGK---QVPCGHVFHAKCISTWIS---------LSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~---~~~C~H~f~~~Ci~~w~~---------~~~~CP~Cr~~~ 124 (128)
..|.+|...+.+.++.+. ...|.-.+|..|+..-+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 579999999954333222 223888999999988332 124799998743
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=84.85 E-value=0.49 Score=25.69 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=20.7
Q ss_pred cccccccccCCC------CCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 79 CMVCMEDFDPQE------FPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 79 C~IC~~~~~~~~------~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
|.-|+..|..+. ....-..|++.||.+|=.-.-..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666665431 1223446999999999544333445799884
No 122
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=83.49 E-value=0.17 Score=29.31 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=22.3
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
..||.|..++...+ ++.+|..|-.. +.....||-|.+++.+
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHH
Confidence 46999988865521 66677777653 3455579999888754
No 123
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=0.68 Score=35.59 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=31.7
Q ss_pred CccccccccccccCC-CCCCeEcCCCCcccHhhHHHHhccCcccccc
Q 033086 75 TEGVCMVCMEDFDPQ-EFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~C 120 (128)
....|+.|.-.+... +-....=.|||.||+.|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 356799988776432 2223333499999999999998777766443
No 124
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=82.33 E-value=0.73 Score=26.30 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=8.8
Q ss_pred cccHhhHHHHhc
Q 033086 101 VFHAKCISTWIS 112 (128)
Q Consensus 101 ~f~~~Ci~~w~~ 112 (128)
.||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 125
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=0.89 Score=35.53 Aligned_cols=37 Identities=24% Similarity=0.626 Sum_probs=29.9
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
.....+|.||.+.+.. ....+.|||.||..|....+.
T Consensus 67 ~~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CCccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhh
Confidence 3566789999998754 357789999999999988775
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=80.80 E-value=0.87 Score=32.08 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=36.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
+....|.+|-.....+ ++.-.|+-.+|..|+...+.....||.|.-
T Consensus 179 dnlk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 3456799999887664 355668888999999999998889999943
No 127
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.50 E-value=0.6 Score=38.76 Aligned_cols=38 Identities=26% Similarity=0.523 Sum_probs=28.6
Q ss_pred CCccccccccccccCCC---CCCeEcCCCCcccHhhHHHHh
Q 033086 74 TTEGVCMVCMEDFDPQE---FPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
..+..|.-|++.....+ .....+.|||.||..|+.--.
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~ 822 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMES 822 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHH
Confidence 34447999999886544 456788999999999986443
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.68 E-value=0.58 Score=35.92 Aligned_cols=45 Identities=29% Similarity=0.568 Sum_probs=0.0
Q ss_pred ccccccccccccCC----------CCCCeEcCCCCcccHhhHHHHhc------cCccccccCcc
Q 033086 76 EGVCMVCMEDFDPQ----------EFPGKQVPCGHVFHAKCISTWIS------LSNSCPVCRSR 123 (128)
Q Consensus 76 ~~~C~IC~~~~~~~----------~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~ 123 (128)
..+||+=+..+..+ .+.-.-+.|||++.+ ..|-. ..++||+||..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCcccc
Confidence 34566665554322 123356789998764 46753 24589999974
No 129
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=78.96 E-value=1.1 Score=24.34 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=6.1
Q ss_pred CccccccCccee
Q 033086 114 SNSCPVCRSRCI 125 (128)
Q Consensus 114 ~~~CP~Cr~~~~ 125 (128)
+..||+|.++|+
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 338999988875
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=78.48 E-value=2.9 Score=24.73 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=19.8
Q ss_pred CccccccccccccCC---CCCCeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-+..... +.-+....|+--.|+.|..-=. ..++.||.|+.++.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 445699999987431 1112234577778999986443 45668999998764
No 131
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=78.14 E-value=0.71 Score=37.26 Aligned_cols=43 Identities=30% Similarity=0.724 Sum_probs=27.1
Q ss_pred CCcccccccccc-----ccCCCCCCeEcCCCCcccHhhHHHHhccCcccccc
Q 033086 74 TTEGVCMVCMED-----FDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120 (128)
Q Consensus 74 ~~~~~C~IC~~~-----~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~C 120 (128)
.....|.+|... |.. ..+.....|+++||..|+.+ .+..||.|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~-~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFET-RNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCccccccc-ccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 445667787221 111 23445567999999999654 34459999
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.98 E-value=0.34 Score=35.55 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=37.3
Q ss_pred CccccccccccccC--CCCCCeEcC--------CCCcccHhhHHHHhccC-ccccccCc
Q 033086 75 TEGVCMVCMEDFDP--QEFPGKQVP--------CGHVFHAKCISTWISLS-NSCPVCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~~--~~~~~~~~~--------C~H~f~~~Ci~~w~~~~-~~CP~Cr~ 122 (128)
.+..|.||...+.. .....+.+. |||..|..|+..-+.+. ..||.||.
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 34679999999973 234455666 99999999999987655 48999986
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=77.86 E-value=0.74 Score=26.14 Aligned_cols=38 Identities=26% Similarity=0.504 Sum_probs=19.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
.+...|.+|...|..-.....-..||++||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34567999999996532222344699999999987554
No 134
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=77.81 E-value=1.8 Score=27.14 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=28.5
Q ss_pred CccccccccccccCCCCCC------eEcCC---CCcccHhhHHHHhcc---------CccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQEFPG------KQVPC---GHVFHAKCISTWISL---------SNSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~------~~~~C---~H~f~~~Ci~~w~~~---------~~~CP~Cr~~ 123 (128)
....|..|....... .. ....| .-.||..||..++.. .-.||.||..
T Consensus 6 ~g~~CHqCrqKt~~~--~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDF--KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCchhhcCCCCCC--ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 344577777644321 11 12345 667999999887742 2369999863
No 135
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.52 E-value=2.5 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
..-..|..|+.++..| ++.+=||.|+++||.+.+.
T Consensus 41 K~FdcCsLtLqPc~dP----vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDP----VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCC----ccCCCCeeeeHHHHHHHHH
Confidence 4555689999999887 8889999999999987653
No 136
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=77.32 E-value=2 Score=23.22 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=25.7
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
..|.+|-..|..-.....-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 458889888865333344557999999999876543
No 137
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=77.04 E-value=1.7 Score=32.68 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=29.9
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
..|-.|...... ....+.-.|.+.||.+|-.-.-..-..||.|.
T Consensus 331 ~~Cf~C~~~~~~-~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLS-SGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCC-CCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 348888666554 33445667999999999654433445799996
No 138
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.07 E-value=3 Score=26.44 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=32.4
Q ss_pred cccccccccccCCC----------CCCeEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 77 GVCMVCMEDFDPQE----------FPGKQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 77 ~~C~IC~~~~~~~~----------~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
..|--|...|..+. ....-..|++.||.+|=.-+-..-..||-|-.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 35888888875421 11235579999999997777666668999953
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.02 E-value=1.9 Score=35.79 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=28.7
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPV 119 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~ 119 (128)
.|.+|-..+.. .....-.|||.-|..|+..|+....-||.
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 57777655433 12234469999999999999988877766
No 140
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=74.00 E-value=0.7 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCccccccccccccCCCCCCeEcC-----CCCcccHhhHHHHhccCccccccCc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVP-----CGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~-----C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
......||||-...... .+.. -.+.+|..|-..|--....||.|-.
T Consensus 169 ~w~~g~CPvCGs~P~~s----~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLS----VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -TT-SS-TTT---EEEE----EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CccCCcCCCCCCcCceE----EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 35568999998875432 1111 1345788899999877778999954
No 143
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=73.84 E-value=1.2 Score=23.55 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=28.5
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhc------cCccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS------LSNSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~ 122 (128)
.|.||...... +..+.--.|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 37888883333 34445557889999999864432 2347888864
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.30 E-value=4.2 Score=30.56 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=31.9
Q ss_pred Ccccccccccccc---------------CCCCCCeEcCCCCcccHhhHHHHhc---------cCccccccCcce
Q 033086 75 TEGVCMVCMEDFD---------------PQEFPGKQVPCGHVFHAKCISTWIS---------LSNSCPVCRSRC 124 (128)
Q Consensus 75 ~~~~C~IC~~~~~---------------~~~~~~~~~~C~H~f~~~Ci~~w~~---------~~~~CP~Cr~~~ 124 (128)
.+.+|++|+..=. .+.-.....||||.--.+-..-|.+ .+..||+|-..+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3568999986521 0001223458999877777888875 223699997644
No 145
>PF14353 CpXC: CpXC protein
Probab=73.25 E-value=4 Score=26.11 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=25.5
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC---ccccccCcceee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS---NSCPVCRSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr~~~~~ 126 (128)
.+||-|...|....+... .-....+-..+.+... .+||.|.+.+.+
T Consensus 2 itCP~C~~~~~~~v~~~I----~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSI----NADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEE----cCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 468888888765321111 1122334444555433 479999887754
No 146
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.77 E-value=0.76 Score=30.10 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=28.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-Cc---cccccCcce
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SN---SCPVCRSRC 124 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~---~CP~Cr~~~ 124 (128)
...+.+|.||...-...+.-.....|.-.||..|-.+.... ++ .|-+|++..
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 46778999998654332222223334445566665443322 22 588887643
No 147
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.66 E-value=2 Score=23.29 Aligned_cols=13 Identities=23% Similarity=0.495 Sum_probs=9.3
Q ss_pred ccccccccccccC
Q 033086 76 EGVCMVCMEDFDP 88 (128)
Q Consensus 76 ~~~C~IC~~~~~~ 88 (128)
.+.||.|-..+..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 4679999886554
No 148
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.82 E-value=2 Score=34.47 Aligned_cols=44 Identities=27% Similarity=0.939 Sum_probs=34.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+....|.||+... . .+..+|. |..|+..|+..+..||.|++.+.
T Consensus 477 ~~~~~~~~~~~~~-~----~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S----ARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-H----hcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 4456799999887 2 2556677 88999999999999999987654
No 149
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=3.5 Score=30.47 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=28.1
Q ss_pred CCCccccccccccccCCCCCCeEcCC----CCcccHhhHHHHhccC
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPC----GHVFHAKCISTWISLS 114 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C----~H~f~~~Ci~~w~~~~ 114 (128)
......|-+|.+.+++- -...| .|.||..|-..-++.+
T Consensus 265 ~~apLcCTLC~ERLEDT----HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDT----HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCCceeehhhhhhhccC----ceeecCCCcccceecccCHHHHHhh
Confidence 45557899999998762 22345 7999999998887644
No 150
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.22 E-value=1.7 Score=32.22 Aligned_cols=50 Identities=22% Similarity=0.584 Sum_probs=39.5
Q ss_pred CCCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 72 SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.......|.||...+..++ +.-.|+|.|+..|...|....+.||.|+...
T Consensus 101 ~~~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred ccCCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 3456678999998887653 3345999999999999998888899987643
No 151
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.98 E-value=5.4 Score=23.25 Aligned_cols=44 Identities=23% Similarity=0.567 Sum_probs=26.8
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
|.-|-.++........+-.=.+.||.+|...-| +..||.|-..+
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGel 51 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGEL 51 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchh
Confidence 555666654422222322235789999987653 56899996544
No 152
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=66.58 E-value=3.5 Score=19.87 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=21.6
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
|..|...+... ......=+..||..|. .|..|+.++
T Consensus 2 C~~C~~~i~~~--~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGG--ELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCC--cEEEEeCCccccccCC--------CCcccCCcC
Confidence 66777766552 1123334667887774 677787655
No 153
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.22 E-value=3 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=10.8
Q ss_pred cccHhhHHHHhc
Q 033086 101 VFHAKCISTWIS 112 (128)
Q Consensus 101 ~f~~~Ci~~w~~ 112 (128)
.||+.|+..|.+
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 154
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=64.05 E-value=1.1 Score=20.04 Aligned_cols=7 Identities=43% Similarity=1.241 Sum_probs=3.3
Q ss_pred cccccCc
Q 033086 116 SCPVCRS 122 (128)
Q Consensus 116 ~CP~Cr~ 122 (128)
-||.|.+
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3555543
No 155
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.86 E-value=5.5 Score=32.86 Aligned_cols=44 Identities=34% Similarity=0.635 Sum_probs=32.6
Q ss_pred ccccccccccCCCCCCeEcCCCC-cccHhhHHHHhc--c----CccccccCccee
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGH-VFHAKCISTWIS--L----SNSCPVCRSRCI 125 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~--~----~~~CP~Cr~~~~ 125 (128)
.|+||-...... ..-.||| ..|..|..+... . ...||+||..+.
T Consensus 2 ~c~ic~~s~~~~----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFV----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcccc----ccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 488988776553 5668999 899999987652 3 335799998654
No 156
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.71 E-value=6.8 Score=34.09 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=33.5
Q ss_pred CccccccccccccCC--CC-CCeEcCCCCcccHhhHHH-HhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EF-PGKQVPCGHVFHAKCIST-WISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~-~~~~~~C~H~f~~~Ci~~-w~~~~~~CP~Cr~~~~ 125 (128)
....|.||-++.... ++ =+..-.|+--.|+.|..- .-..++.||.|+..+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 344799999997432 11 123345777799999843 3345668999998764
No 157
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=60.63 E-value=3.1 Score=37.21 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=36.9
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc----cccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN----SCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~----~CP~Cr~~ 123 (128)
.....|.+|....+. .......-|.-.||..|+...+.... .||-||+.
T Consensus 1106 ~~~~~c~~cr~k~~~-~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQD-EKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcccc-hhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 456679999998776 33444556888999999998876443 79999864
No 158
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=60.62 E-value=3.2 Score=22.32 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=3.9
Q ss_pred CCCcccHhh
Q 033086 98 CGHVFHAKC 106 (128)
Q Consensus 98 C~H~f~~~C 106 (128)
-+..||..|
T Consensus 18 ~~~~~H~~C 26 (58)
T PF00412_consen 18 MGKFWHPEC 26 (58)
T ss_dssp TTEEEETTT
T ss_pred CCcEEEccc
Confidence 334444444
No 159
>PLN02189 cellulose synthase
Probab=59.34 E-value=6.9 Score=33.94 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=33.5
Q ss_pred CccccccccccccCC--CCC-CeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EFP-GKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~~-~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-+++... ++. +..-.|+--.|+.|...=- ..++.||.|++.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344799999998531 221 1233477778999985433 35568999998764
No 160
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=58.13 E-value=6.8 Score=21.19 Aligned_cols=22 Identities=32% Similarity=0.900 Sum_probs=11.2
Q ss_pred CCCcccHhhHHHHhccCcccccc
Q 033086 98 CGHVFHAKCISTWISLSNSCPVC 120 (128)
Q Consensus 98 C~H~f~~~Ci~~w~~~~~~CP~C 120 (128)
|||.|-.. +.........||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 45544333 22222455678887
No 161
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=57.90 E-value=2.6 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCccccccccccccCCCCCCeEc--CC--CCcccHhhHHHHhccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PC--GHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C--~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
+....||||-..-... .+... .= .+.+|..|-..|-.....||.|..
T Consensus 182 ~~~~~CPvCGs~P~~s--~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 182 ESRTLCPACGSPPVAS--MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCCcCCCCCChhhhh--hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4456899998775321 00000 11 234666788899777778999964
No 162
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.74 E-value=7.2 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=18.7
Q ss_pred cccHhhHHHHhccCccccccCcce
Q 033086 101 VFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 101 ~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.-|..|-...-++...||+|+.+-
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred chhHhHHHHHhcCCCCCccccccc
Confidence 357788887777888999998653
No 163
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=57.00 E-value=7.2 Score=24.72 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=29.9
Q ss_pred CccccccccccccCC-CCCCeEcCCCCcccHhhHHHHhccCc--cccccCc
Q 033086 75 TEGVCMVCMEDFDPQ-EFPGKQVPCGHVFHAKCISTWISLSN--SCPVCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~ 122 (128)
....|.+|...|..- +.......|+|.+|..|-.. ..+.. .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 556899999887431 23356778999999999644 21222 5888865
No 164
>PLN02436 cellulose synthase A
Probab=56.11 E-value=8.2 Score=33.61 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=33.3
Q ss_pred CccccccccccccCC--CCC-CeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EFP-GKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~~-~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-++.... ++. +..-.|+--.|+.|...=- ..++.||.|++.+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344799999997331 111 1233477778999985433 35568999998764
No 165
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=56.08 E-value=8.9 Score=29.27 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=11.9
Q ss_pred CCCccccccccccccC
Q 033086 73 GTTEGVCMVCMEDFDP 88 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~ 88 (128)
.+.++.||+|-+....
T Consensus 12 edl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccccCcccc
Confidence 3566789999888653
No 166
>PRK01343 zinc-binding protein; Provisional
Probab=55.80 E-value=6.1 Score=21.95 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=7.4
Q ss_pred CccccccCcce
Q 033086 114 SNSCPVCRSRC 124 (128)
Q Consensus 114 ~~~CP~Cr~~~ 124 (128)
...||+|++++
T Consensus 9 ~~~CP~C~k~~ 19 (57)
T PRK01343 9 TRPCPECGKPS 19 (57)
T ss_pred CCcCCCCCCcC
Confidence 34688887764
No 167
>PLN02400 cellulose synthase
Probab=54.23 E-value=8.3 Score=33.61 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=33.1
Q ss_pred CccccccccccccCC--CC-CCeEcCCCCcccHhhHHH-HhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EF-PGKQVPCGHVFHAKCIST-WISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~-~~~~~~C~H~f~~~Ci~~-w~~~~~~CP~Cr~~~~ 125 (128)
....|.||-++.... ++ =+..-.|+--.|+.|..- .-..++.||.|+..+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 344799999997431 11 123345777789999842 2235568999998764
No 168
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=53.37 E-value=12 Score=23.33 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=24.5
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
-.|.||-.++..+ ..++..-+-..|+.|+..-..
T Consensus 3 WkC~iCg~~I~~g--qlFTF~~kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEG--QLFTFTKKGPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeec--ceEEEecCCcEeHHHHHHHHh
Confidence 3699999999874 335555556789999976543
No 169
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=53.22 E-value=7.2 Score=29.22 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=29.9
Q ss_pred CCccccccccccccCCCCCCeEcCC--CCcccHhhHHHHhccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPC--GHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
+....||||-..-... .......= .+.+|..|-..|-.....||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3568899998775321 00000011 234677788899877778999964
No 170
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.01 E-value=7.6 Score=32.09 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=30.3
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
...|.+|..+-.....+...+.|+-.||..| |+.-...||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 3468888877554345556778999888887 444566799994
No 171
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=52.28 E-value=2.7 Score=19.39 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=4.3
Q ss_pred cccccccc
Q 033086 79 CMVCMEDF 86 (128)
Q Consensus 79 C~IC~~~~ 86 (128)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555554
No 172
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=51.70 E-value=4.5 Score=22.13 Aligned_cols=14 Identities=36% Similarity=1.075 Sum_probs=12.6
Q ss_pred CCCCcccHhhHHHH
Q 033086 97 PCGHVFHAKCISTW 110 (128)
Q Consensus 97 ~C~H~f~~~Ci~~w 110 (128)
.|++.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998888
No 173
>PLN02248 cellulose synthase-like protein
Probab=51.12 E-value=10 Score=33.24 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=25.0
Q ss_pred CCCCcccHhhHHHHhccCccccccCccee
Q 033086 97 PCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 97 ~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.|+...|++|....++....||-|+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 36778899999999988889999998774
No 174
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=50.70 E-value=7.5 Score=21.76 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=8.7
Q ss_pred CccccccCccee
Q 033086 114 SNSCPVCRSRCI 125 (128)
Q Consensus 114 ~~~CP~Cr~~~~ 125 (128)
...||+|..+..
T Consensus 39 ~p~CPlC~s~M~ 50 (59)
T PF14169_consen 39 EPVCPLCKSPMV 50 (59)
T ss_pred CccCCCcCCccc
Confidence 347999987653
No 175
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=49.66 E-value=11 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=18.3
Q ss_pred cccHhhHHHHhccCccccccCcce
Q 033086 101 VFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 101 ~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
..|..|-...-++...||+|+.+.
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhcc
Confidence 357778777777888999998653
No 176
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.41 E-value=5.2 Score=31.34 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=26.5
Q ss_pred cccccccccccCCCCC----CeEcCCCCcccHhhHHHHhccC
Q 033086 77 GVCMVCMEDFDPQEFP----GKQVPCGHVFHAKCISTWISLS 114 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~----~~~~~C~H~f~~~Ci~~w~~~~ 114 (128)
..||.|.......+.. ....+|.|.||+.|+..|....
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3499999988653211 1222599999999998887653
No 177
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=49.29 E-value=3.6 Score=30.48 Aligned_cols=37 Identities=30% Similarity=0.752 Sum_probs=27.2
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS 114 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~ 114 (128)
..|.+|++.+.. +.......|...||..|+..|+...
T Consensus 215 rvC~~CF~el~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEK-GARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhc-ccccchhhccccccccccccccccc
Confidence 389999999975 2333455566689999999998643
No 178
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=47.73 E-value=9.9 Score=18.89 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=8.0
Q ss_pred cccccCcceeeC
Q 033086 116 SCPVCRSRCIIS 127 (128)
Q Consensus 116 ~CP~Cr~~~~~~ 127 (128)
+||.|.+.|.++
T Consensus 4 ~CP~C~~~f~v~ 15 (37)
T PF13719_consen 4 TCPNCQTRFRVP 15 (37)
T ss_pred ECCCCCceEEcC
Confidence 577777766553
No 179
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=46.85 E-value=10 Score=18.78 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=8.6
Q ss_pred cccccCcceeeC
Q 033086 116 SCPVCRSRCIIS 127 (128)
Q Consensus 116 ~CP~Cr~~~~~~ 127 (128)
+||.|.+.+.++
T Consensus 4 ~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 4 TCPNCQAKYEID 15 (36)
T ss_pred ECCCCCCEEeCC
Confidence 588888777653
No 180
>PLN02195 cellulose synthase A
Probab=45.13 E-value=22 Score=30.78 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=33.4
Q ss_pred CccccccccccccCC--CC-CCeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EF-PGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~-~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-+..... ++ -+..-.|+--.|+.|..-=- ..++.||.|+..+.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 445799999977432 11 12344588889999984322 35568999987653
No 181
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=44.95 E-value=8.5 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=22.1
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHH
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIS 108 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 108 (128)
..|.||..+..+ ++..+.--|-..||..|+.
T Consensus 315 ~lC~IC~~P~~E-~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 315 ELCRICLGPVIE-SEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred HhhhccCCcccc-hheeccccccCCCCccccc
Confidence 357888888766 4455556688888888874
No 182
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=44.39 E-value=14 Score=31.42 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=11.2
Q ss_pred CCCcccccccccccc
Q 033086 73 GTTEGVCMVCMEDFD 87 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~ 87 (128)
..+-.+|.||+..+.
T Consensus 602 ~TdPNqCiiC~rVlS 616 (958)
T KOG1074|consen 602 RTDPNQCIICLRVLS 616 (958)
T ss_pred cCCccceeeeeeccc
Confidence 456678999987764
No 183
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=44.22 E-value=13 Score=23.03 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCCCCCccccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 70 AGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 70 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
......+++|.-|+...... .+..-.=|+.+|.+|
T Consensus 64 iP~q~DEFTCssCFLV~HRS--qLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 64 IPKQADEFTCSSCFLVHHRS--QLAREKDGQPICRDC 98 (99)
T ss_pred ecCCCCceeeeeeeeEechh--hhccccCCCEecccc
Confidence 33456889999998775432 112233467777776
No 184
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.15 E-value=22 Score=21.93 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL 113 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~ 113 (128)
...|.||-..+..+ +.-...+ .-..|++|+..-.++
T Consensus 6 ewkC~VCg~~iieG-qkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEG-QKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeec-cEEEEee-CCcchHHHHHHHHhc
Confidence 45799999999874 3433444 556899999775543
No 185
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=43.42 E-value=11 Score=22.30 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=8.2
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHH------Hh-------ccCccccccCccee
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST------WI-------SLSNSCPVCRSRCI 125 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~------w~-------~~~~~CP~Cr~~~~ 125 (128)
+|.+|-..|......+..+.-.|.|....... .+ .....|+.|.+.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~ 61 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFR 61 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EES
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCc
Confidence 47888888766555555555666655431111 11 12357999987663
No 186
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=43.30 E-value=15 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
...|+-|...+..- ...| +..|+..++.|..|++++..
T Consensus 33 rS~C~~C~~~L~~~----~lIP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWW----DLIP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCccc----ccch---------HHHHHHhCCCCcccCCCCCh
Confidence 34577777666542 1122 66888899999999988753
No 187
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=42.93 E-value=14 Score=17.27 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=9.3
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhH
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 107 (128)
.|.+|...... +....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 46777766554 233445567777777774
No 188
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=42.43 E-value=19 Score=29.73 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=26.9
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhc--cCc--cccccCcceee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS--LSN--SCPVCRSRCII 126 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~--~CP~Cr~~~~~ 126 (128)
..|+|+...+..+ .+...|+|.-|.+-+.-.-. +.. .||+|-+...+
T Consensus 307 L~CPl~~~Rm~~P---~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 307 LNCPLSKMRMSLP---ARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred ecCCcccceeecC---CcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 4688877666554 35556777666554321111 222 69999876544
No 189
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=41.84 E-value=17 Score=23.12 Aligned_cols=19 Identities=11% Similarity=0.426 Sum_probs=12.9
Q ss_pred HHhccCccccccCcceeeC
Q 033086 109 TWISLSNSCPVCRSRCIIS 127 (128)
Q Consensus 109 ~w~~~~~~CP~Cr~~~~~~ 127 (128)
+.+.+...|+.|++++.+.
T Consensus 80 KmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred hhhchhhccCcCCCcCccC
Confidence 3455555788998887653
No 190
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=41.10 E-value=6 Score=18.91 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=9.2
Q ss_pred CcccHhhHHHHhc----cCccccccCc
Q 033086 100 HVFHAKCISTWIS----LSNSCPVCRS 122 (128)
Q Consensus 100 H~f~~~Ci~~w~~----~~~~CP~Cr~ 122 (128)
|.||..|-.+... ....||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4555555544332 1235777754
No 191
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=40.55 E-value=12 Score=17.05 Aligned_cols=9 Identities=44% Similarity=1.154 Sum_probs=5.6
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 477776544
No 192
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.76 E-value=16 Score=17.58 Aligned_cols=8 Identities=50% Similarity=1.228 Sum_probs=5.9
Q ss_pred ccccccCc
Q 033086 115 NSCPVCRS 122 (128)
Q Consensus 115 ~~CP~Cr~ 122 (128)
..||+|..
T Consensus 18 ~~CP~Cg~ 25 (33)
T cd00350 18 WVCPVCGA 25 (33)
T ss_pred CcCcCCCC
Confidence 37999864
No 193
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=39.75 E-value=17 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.7
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc--ccccc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN--SCPVC 120 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~C 120 (128)
...|||-..++..| ++-..|||+|=++-|...+.... .||+-
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 35688877777665 45667999999999999886533 58864
No 194
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.45 E-value=31 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=33.7
Q ss_pred CccccccccccccCC--CC-CCeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ--EF-PGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--~~-~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-+..... ++ =+..-.|+--.|+.|..-=. ..+..||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 455699999987432 11 12334577779999985333 35568999998764
No 195
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=39.39 E-value=3.1 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=17.8
Q ss_pred ccccc--ccccccCCCC--C--CeEcCCCCcccHhhHHHH
Q 033086 77 GVCMV--CMEDFDPQEF--P--GKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 77 ~~C~I--C~~~~~~~~~--~--~~~~~C~H~f~~~Ci~~w 110 (128)
..|+- |-..+...+. . +.-..|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 35766 7666644221 1 233348999999998777
No 196
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=39.30 E-value=17 Score=17.79 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=7.0
Q ss_pred cccccCcceee
Q 033086 116 SCPVCRSRCII 126 (128)
Q Consensus 116 ~CP~Cr~~~~~ 126 (128)
.||.|.+.+.+
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 57777666554
No 197
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=38.68 E-value=15 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.543 Sum_probs=25.9
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
...|-||-....+ =||.||..|.. .+..|.+|-+.+
T Consensus 44 ~~~C~~CK~~v~q---------~g~~YCq~CAY----kkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQ---------PGAKYCQTCAY----KKGICAMCGKKI 79 (90)
T ss_pred Ccccccccccccc---------CCCccChhhhc----ccCcccccCCee
Confidence 4469999766544 25679999953 467899997765
No 198
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.02 E-value=11 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=0.0
Q ss_pred ccccccccccccC-C--------------CCCCeEcCCCCcccHhhHHHHhcc---------CccccccCccee
Q 033086 76 EGVCMVCMEDFDP-Q--------------EFPGKQVPCGHVFHAKCISTWISL---------SNSCPVCRSRCI 125 (128)
Q Consensus 76 ~~~C~IC~~~~~~-~--------------~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~Cr~~~~ 125 (128)
..+|++|+..=.- + .-....-||||.--.+...-|-+- +..||.|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 6789999865210 0 011234489999888888889751 236999987664
No 199
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=37.07 E-value=16 Score=16.42 Aligned_cols=10 Identities=30% Similarity=1.065 Sum_probs=6.6
Q ss_pred cccccCccee
Q 033086 116 SCPVCRSRCI 125 (128)
Q Consensus 116 ~CP~Cr~~~~ 125 (128)
.||.|.+.|.
T Consensus 4 ~C~~CgR~F~ 13 (25)
T PF13913_consen 4 PCPICGRKFN 13 (25)
T ss_pred cCCCCCCEEC
Confidence 4777766663
No 200
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=27 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=34.5
Q ss_pred CCCccccccccccccCCCCCCe------EcCCCCcc--------------------cHhhHHHHhc--------cCcccc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGK------QVPCGHVF--------------------HAKCISTWIS--------LSNSCP 118 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~------~~~C~H~f--------------------~~~Ci~~w~~--------~~~~CP 118 (128)
..+..+|.=|++++-.+..... .+.||..| |..|..+.-. +-..||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 3466789999999977655443 33477776 7888876643 112688
Q ss_pred ccCcce
Q 033086 119 VCRSRC 124 (128)
Q Consensus 119 ~Cr~~~ 124 (128)
.|.=.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 885433
No 201
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=36.81 E-value=17 Score=26.28 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--Cccccc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--SNSCPV 119 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~ 119 (128)
...|+|-+.++..| +.-..|.|.|-.+-|...+.. ...||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 45799987776554 456679999999999998873 345764
No 202
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=36.76 E-value=7.5 Score=19.91 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=15.1
Q ss_pred eEcCCCCcccHhhHHHHhccCccccccCc
Q 033086 94 KQVPCGHVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
....|||.|-..--..= .....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 34467777654321111 23347999987
No 203
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=36.67 E-value=13 Score=20.20 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=3.8
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
+||.|...+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 677776544
No 204
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=35.86 E-value=32 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred CccccccccccccCCCCCCeEc--CCCCcccHhhHHHH
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCISTW 110 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w 110 (128)
....|.||.... +..+.-. .|...||..|...+
T Consensus 54 ~~~~C~iC~~~~---G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSG---GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCC---ceeEEcCCCCCCcCCCHHHHHHC
Confidence 466899998872 2122222 27779999998653
No 205
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=35.02 E-value=15 Score=15.56 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=6.6
Q ss_pred cccccCccee
Q 033086 116 SCPVCRSRCI 125 (128)
Q Consensus 116 ~CP~Cr~~~~ 125 (128)
.||.|.+.|.
T Consensus 2 ~C~~C~~~f~ 11 (23)
T PF00096_consen 2 KCPICGKSFS 11 (23)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCccC
Confidence 4777776653
No 206
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=34.77 E-value=41 Score=28.27 Aligned_cols=28 Identities=36% Similarity=0.569 Sum_probs=16.7
Q ss_pred eEcCCCCcccHhhHHHHhccCccccccC
Q 033086 94 KQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
+..|-|..||++|-..=-.....|-+|-
T Consensus 42 vqVPtGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred EecCCCchhhhhhhhhhhhccceeeccc
Confidence 3446677788888654333334677773
No 207
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=33.45 E-value=22 Score=16.55 Aligned_cols=10 Identities=50% Similarity=1.364 Sum_probs=4.8
Q ss_pred cccccCccee
Q 033086 116 SCPVCRSRCI 125 (128)
Q Consensus 116 ~CP~Cr~~~~ 125 (128)
.||.|.+++.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4888877664
No 208
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.27 E-value=7.8 Score=17.62 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=3.2
Q ss_pred cccccCc
Q 033086 116 SCPVCRS 122 (128)
Q Consensus 116 ~CP~Cr~ 122 (128)
-||.|-+
T Consensus 18 fC~~CG~ 24 (26)
T PF13248_consen 18 FCPNCGA 24 (26)
T ss_pred cChhhCC
Confidence 3555543
No 209
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.26 E-value=20 Score=24.12 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=16.0
Q ss_pred CCcccHhhHHHHhccCccccccCcce
Q 033086 99 GHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 99 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.+.||.+|-.+-.. .||.|..++
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~I 49 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPI 49 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCC
Confidence 45699999776543 488887543
No 210
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=32.95 E-value=21 Score=19.98 Aligned_cols=11 Identities=36% Similarity=1.156 Sum_probs=7.8
Q ss_pred cccccCcceee
Q 033086 116 SCPVCRSRCII 126 (128)
Q Consensus 116 ~CP~Cr~~~~~ 126 (128)
.||.||.++.+
T Consensus 10 aCP~~kg~L~~ 20 (60)
T COG2835 10 ACPVCKGPLVY 20 (60)
T ss_pred eccCcCCcceE
Confidence 58888877643
No 211
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=32.62 E-value=27 Score=28.48 Aligned_cols=37 Identities=27% Similarity=0.652 Sum_probs=24.4
Q ss_pred CCccccccccccccCC------CC---CCeEcCCCCcccHhhHHHH
Q 033086 74 TTEGVCMVCMEDFDPQ------EF---PGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~------~~---~~~~~~C~H~f~~~Ci~~w 110 (128)
+....|+||.+.|..- .+ ..+.+.=|.+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 5667899999999531 11 1122224889999998653
No 212
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.33 E-value=37 Score=23.94 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=3.6
Q ss_pred ccccccc
Q 033086 79 CMVCMED 85 (128)
Q Consensus 79 C~IC~~~ 85 (128)
|.+|-..
T Consensus 8 C~~C~~~ 14 (227)
T PRK11595 8 CWLCRMP 14 (227)
T ss_pred CccCCCc
Confidence 5555443
No 213
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.87 E-value=22 Score=18.43 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=6.6
Q ss_pred CccccccCcce
Q 033086 114 SNSCPVCRSRC 124 (128)
Q Consensus 114 ~~~CP~Cr~~~ 124 (128)
.+.||+|..+|
T Consensus 8 ~K~C~~C~rpf 18 (42)
T PF10013_consen 8 SKICPVCGRPF 18 (42)
T ss_pred CCcCcccCCcc
Confidence 34577776655
No 214
>PRK11827 hypothetical protein; Provisional
Probab=31.49 E-value=15 Score=20.55 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=7.0
Q ss_pred cCccccccCccee
Q 033086 113 LSNSCPVCRSRCI 125 (128)
Q Consensus 113 ~~~~CP~Cr~~~~ 125 (128)
.--.||.|+.++.
T Consensus 7 eILaCP~ckg~L~ 19 (60)
T PRK11827 7 EIIACPVCNGKLW 19 (60)
T ss_pred hheECCCCCCcCe
Confidence 3335666665554
No 215
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.31 E-value=33 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=16.1
Q ss_pred cccccccccccCCCCCCeEcCCCCcc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVF 102 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f 102 (128)
..||+|...+...+ ....-..+|.|
T Consensus 3 ~~CP~C~~~l~~~~-~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEE-NSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCC-CEEEcCCCCCC
Confidence 46999999996532 22333447777
No 216
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.30 E-value=20 Score=29.53 Aligned_cols=44 Identities=25% Similarity=0.565 Sum_probs=31.3
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhc--------cCcccccc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS--------LSNSCPVC 120 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--------~~~~CP~C 120 (128)
..|..|...|..-....-...||.+||..|..+-+. ..++|-.|
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
Confidence 689999999965344445667999999999765442 22467666
No 217
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.09 E-value=26 Score=22.94 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=11.3
Q ss_pred CCCCeEcCCCCcccHh
Q 033086 90 EFPGKQVPCGHVFHAK 105 (128)
Q Consensus 90 ~~~~~~~~C~H~f~~~ 105 (128)
+..+..-.|||.|+..
T Consensus 67 ~~rv~rcecghsf~d~ 82 (165)
T COG4647 67 QKRVIRCECGHSFGDY 82 (165)
T ss_pred cccEEEEeccccccCh
Confidence 3345666799999865
No 218
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=30.60 E-value=49 Score=16.57 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=23.2
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
...|.+|.+.+.....-..-..|+-..|..|....
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 44699998887642112334457888899998664
No 219
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.82 E-value=28 Score=23.81 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.2
Q ss_pred cCccccccCcceeeCC
Q 033086 113 LSNSCPVCRSRCIISG 128 (128)
Q Consensus 113 ~~~~CP~Cr~~~~~~g 128 (128)
....||+|..+++..|
T Consensus 153 GRP~CPlCg~PlDP~G 168 (171)
T PF11290_consen 153 GRPPCPLCGEPLDPEG 168 (171)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 5568999999988766
No 220
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=29.17 E-value=32 Score=17.73 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=8.3
Q ss_pred ccccccCcceee
Q 033086 115 NSCPVCRSRCII 126 (128)
Q Consensus 115 ~~CP~Cr~~~~~ 126 (128)
..||.|..++..
T Consensus 22 ~~Cp~CG~~~~~ 33 (46)
T PRK00398 22 VRCPYCGYRILF 33 (46)
T ss_pred eECCCCCCeEEE
Confidence 468888776654
No 221
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=28.35 E-value=13 Score=27.48 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhc----cCccccccCcce
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS----LSNSCPVCRSRC 124 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~ 124 (128)
.|.||-..--. ++..+.-.|-..+|..|+.+=+. .+-+|.+|-..|
T Consensus 283 ~csicgtsend-dqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 283 YCSICGTSEND-DQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred eeccccCcCCC-ceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 36677654333 45556667899999999986553 223788885443
No 222
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=28.27 E-value=26 Score=14.45 Aligned_cols=9 Identities=33% Similarity=1.184 Sum_probs=4.2
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
.|+.|.+.+
T Consensus 2 ~C~~C~~~~ 10 (24)
T PF13894_consen 2 QCPICGKSF 10 (24)
T ss_dssp E-SSTS-EE
T ss_pred CCcCCCCcC
Confidence 467776554
No 223
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.08 E-value=23 Score=26.14 Aligned_cols=29 Identities=28% Similarity=0.683 Sum_probs=18.4
Q ss_pred cCCCCcccHhhH-HHHhccC----------ccccccCcce
Q 033086 96 VPCGHVFHAKCI-STWISLS----------NSCPVCRSRC 124 (128)
Q Consensus 96 ~~C~H~f~~~Ci-~~w~~~~----------~~CP~Cr~~~ 124 (128)
|+|...+|.+-. .+||.+. +.||.|++.|
T Consensus 186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAF 225 (279)
T KOG2462|consen 186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAF 225 (279)
T ss_pred CCcccccccccccchHHhhcccccccCCCCccCCcccchh
Confidence 466666665433 4788432 3799998876
No 224
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.59 E-value=23 Score=22.30 Aligned_cols=9 Identities=33% Similarity=1.036 Sum_probs=4.4
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
.||.|-..|
T Consensus 28 vCP~CG~~~ 36 (108)
T PF09538_consen 28 VCPKCGTEF 36 (108)
T ss_pred cCCCCCCcc
Confidence 355555444
No 225
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=27.21 E-value=26 Score=15.72 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=6.4
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
.||.|.+.|
T Consensus 16 ~C~~C~k~F 24 (26)
T PF13465_consen 16 KCPYCGKSF 24 (26)
T ss_dssp EESSSSEEE
T ss_pred CCCCCcCee
Confidence 688887655
No 226
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.72 E-value=58 Score=24.01 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCccccccccccccCCCCCCeEcCCCC-cccHhhHHHHhc-cCccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGH-VFHAKCISTWIS-LSNSCPV 119 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~-~~~~CP~ 119 (128)
+....|.||++....+.....++.-.- .=|++|..+|-. -+..||.
T Consensus 28 ~tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 28 ETLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred cceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 455679999998766422222222222 347899999853 4456773
No 227
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=26.59 E-value=17 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=16.1
Q ss_pred CCCcccHhhHHHHhcc----CccccccCcce
Q 033086 98 CGHVFHAKCISTWISL----SNSCPVCRSRC 124 (128)
Q Consensus 98 C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 124 (128)
=.|.||..|-.+.... +..||.|+..+
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCcc
Confidence 4567777776665432 23588877643
No 228
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=33 Score=22.35 Aligned_cols=21 Identities=33% Similarity=0.847 Sum_probs=12.7
Q ss_pred cccHhhHHHHhccCccccccCcce
Q 033086 101 VFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 101 ~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.||.+|-..-+. .||.|..++
T Consensus 29 afcskcgeati~---qcp~csasi 49 (160)
T COG4306 29 AFCSKCGEATIT---QCPICSASI 49 (160)
T ss_pred HHHhhhchHHHh---cCCccCCcc
Confidence 577777655432 488886543
No 229
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=25.66 E-value=19 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=15.2
Q ss_pred cHhhHHHHhccC-ccccccCcc
Q 033086 103 HAKCISTWISLS-NSCPVCRSR 123 (128)
Q Consensus 103 ~~~Ci~~w~~~~-~~CP~Cr~~ 123 (128)
|..|...|+.++ ++|..|-..
T Consensus 3 C~~C~~~~F~~KiGRC~rCM~Q 24 (77)
T PF12292_consen 3 CNDCQESWFWQKIGRCQRCMWQ 24 (77)
T ss_pred hhhHHHHHHHHHhccHHHHHHH
Confidence 567888998644 588888544
No 230
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.61 E-value=32 Score=20.44 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=7.1
Q ss_pred cccccCccee
Q 033086 116 SCPVCRSRCI 125 (128)
Q Consensus 116 ~CP~Cr~~~~ 125 (128)
.||.||..|.
T Consensus 23 ~CPrCrGVWL 32 (88)
T COG3809 23 YCPRCRGVWL 32 (88)
T ss_pred eCCccccEee
Confidence 5888887664
No 231
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.57 E-value=34 Score=20.08 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=20.5
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHH
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST 109 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 109 (128)
....|.+|....... -.-....|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~-i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGAC-IGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeE-EEEeCCCCCcEEChHHHcc
Confidence 345699998662210 0011235888999999754
No 232
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=25.17 E-value=38 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=13.5
Q ss_pred ccCccccccCcceeeCC
Q 033086 112 SLSNSCPVCRSRCIISG 128 (128)
Q Consensus 112 ~~~~~CP~Cr~~~~~~g 128 (128)
.....||+|-.+++..|
T Consensus 154 AGRP~CPlCg~PldP~G 170 (177)
T TIGR03847 154 AGRPPCPLCGRPIDPDG 170 (177)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 35568999999988766
No 233
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=24.74 E-value=55 Score=16.77 Aligned_cols=18 Identities=28% Similarity=0.829 Sum_probs=9.6
Q ss_pred HHHhccCccccccCccee
Q 033086 108 STWISLSNSCPVCRSRCI 125 (128)
Q Consensus 108 ~~w~~~~~~CP~Cr~~~~ 125 (128)
.-|---...||.|..++.
T Consensus 11 ~G~~ML~~~Cp~C~~PL~ 28 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPLM 28 (41)
T ss_pred HhHhHhcCccCCCCCeeE
Confidence 334444556777765543
No 234
>PF15353 HECA: Headcase protein family homologue
Probab=24.73 E-value=50 Score=20.77 Aligned_cols=15 Identities=33% Similarity=1.021 Sum_probs=12.3
Q ss_pred CCCCcccHhhHHHHh
Q 033086 97 PCGHVFHAKCISTWI 111 (128)
Q Consensus 97 ~C~H~f~~~Ci~~w~ 111 (128)
|.++..|.+|.+.|=
T Consensus 39 p~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 39 PFGQYMHRECFEKWE 53 (107)
T ss_pred CCCCchHHHHHHHHH
Confidence 347889999999883
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=24.46 E-value=33 Score=28.82 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.8
Q ss_pred ccCccccccCccee
Q 033086 112 SLSNSCPVCRSRCI 125 (128)
Q Consensus 112 ~~~~~CP~Cr~~~~ 125 (128)
.+++.||.||.+.+
T Consensus 1064 LqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1064 LQKGHCPFCRTSKD 1077 (1081)
T ss_pred HhcCCCCccccccc
Confidence 36778999998764
No 236
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.14 E-value=52 Score=20.35 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=9.9
Q ss_pred CccccccCcceee
Q 033086 114 SNSCPVCRSRCII 126 (128)
Q Consensus 114 ~~~CP~Cr~~~~~ 126 (128)
...||.|+++|..
T Consensus 80 ~~~Cp~C~spFNp 92 (105)
T COG4357 80 CGSCPYCQSPFNP 92 (105)
T ss_pred cCCCCCcCCCCCc
Confidence 3469999988864
No 237
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=23.91 E-value=33 Score=20.98 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=15.3
Q ss_pred eEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 94 KQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
+.-.||-.|-.+= ++.-..||.|++.+
T Consensus 60 ~CkkCGfef~~~~----ik~pSRCP~CKSE~ 86 (97)
T COG3357 60 RCKKCGFEFRDDK----IKKPSRCPKCKSEW 86 (97)
T ss_pred hhcccCccccccc----cCCcccCCcchhhc
Confidence 3345676665421 22344799998765
No 238
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.85 E-value=46 Score=27.66 Aligned_cols=47 Identities=23% Similarity=0.572 Sum_probs=27.9
Q ss_pred ccccccccccccCC-CCCCeEcCCCCcccHhhHHHHhccC-----ccccccCc
Q 033086 76 EGVCMVCMEDFDPQ-EFPGKQVPCGHVFHAKCISTWISLS-----NSCPVCRS 122 (128)
Q Consensus 76 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~-----~~CP~Cr~ 122 (128)
...|++|-..=... +.....-.|+-.+|..|+.-|+... -.||-||.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34566664332111 1122334588899999999998532 26888874
No 239
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.61 E-value=28 Score=29.70 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh-cc-----CccccccCc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-SL-----SNSCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-~~-----~~~CP~Cr~ 122 (128)
......|..|...... ..-+...|++.+|..|+..|. +. ...|++||.
T Consensus 226 ~g~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred cCcchhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 3455678888766432 122455799999999999995 11 125777764
No 240
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=23.52 E-value=5.7 Score=20.25 Aligned_cols=15 Identities=40% Similarity=0.979 Sum_probs=10.9
Q ss_pred HhhHHHHhccCcccc
Q 033086 104 AKCISTWISLSNSCP 118 (128)
Q Consensus 104 ~~Ci~~w~~~~~~CP 118 (128)
..||..|.+++.+|-
T Consensus 18 mkCiyAWYnqq~sCq 32 (42)
T PF05353_consen 18 MKCIYAWYNQQSSCQ 32 (42)
T ss_dssp EEEEE-SSGSTEEEE
T ss_pred HHHHHHHHccCCchH
Confidence 358999998888774
No 241
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=23.36 E-value=41 Score=18.86 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.0
Q ss_pred CeEcCCCCcccHh
Q 033086 93 GKQVPCGHVFHAK 105 (128)
Q Consensus 93 ~~~~~C~H~f~~~ 105 (128)
+..|.|||.-|..
T Consensus 12 VA~L~CGH~QHvR 24 (61)
T PF12088_consen 12 VAELSCGHTQHVR 24 (61)
T ss_pred EEEeccccccccc
Confidence 4678999987754
No 242
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=23.15 E-value=51 Score=28.02 Aligned_cols=32 Identities=31% Similarity=0.726 Sum_probs=19.7
Q ss_pred CCCCcccHh-hHHHHhccC-----ccccccCcceeeCC
Q 033086 97 PCGHVFHAK-CISTWISLS-----NSCPVCRSRCIISG 128 (128)
Q Consensus 97 ~C~H~f~~~-Ci~~w~~~~-----~~CP~Cr~~~~~~g 128 (128)
-||..|..+ =|+..++-+ .-||.|++.|..+|
T Consensus 286 ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSG 323 (1007)
T KOG3623|consen 286 ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSG 323 (1007)
T ss_pred ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCC
Confidence 355555432 234444322 26999999999888
No 243
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=22.96 E-value=49 Score=23.27 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=13.2
Q ss_pred HhhHHHHhc-cCccccccCcce
Q 033086 104 AKCISTWIS-LSNSCPVCRSRC 124 (128)
Q Consensus 104 ~~Ci~~w~~-~~~~CP~Cr~~~ 124 (128)
..||.+--. ..+-||+||...
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 347765433 344699999754
No 244
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=22.85 E-value=21 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=18.6
Q ss_pred CC-CcccHhhHHHHhccCc--cccccCccee
Q 033086 98 CG-HVFHAKCISTWISLSN--SCPVCRSRCI 125 (128)
Q Consensus 98 C~-H~f~~~Ci~~w~~~~~--~CP~Cr~~~~ 125 (128)
|. --||+.|+.--..... .||.|+...-
T Consensus 240 C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 240 CPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 66 6799999853322222 6999987543
No 245
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=22.44 E-value=20 Score=22.04 Aligned_cols=48 Identities=23% Similarity=0.455 Sum_probs=11.3
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHh--c-cCccccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI--S-LSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--~-~~~~CP~Cr~~~ 124 (128)
..|++|...+...+.....=.=||.|-+=.+.-.. . .-+.|++|...+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 67999988775433222332347876432222111 1 114788886544
No 246
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.42 E-value=25 Score=26.57 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCCccccccccccccCCCCCCeEcCCCC-cccHhhHHHH-hccCccccccCcc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGH-VFHAKCISTW-ISLSNSCPVCRSR 123 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w-~~~~~~CP~Cr~~ 123 (128)
......|.+|+..- ......+|+| +||..|..+- +++...|++|-..
T Consensus 133 ~~~ti~~iqq~tnt----~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta 181 (394)
T KOG2113|consen 133 KGATIKRIQQFTNT----YIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTA 181 (394)
T ss_pred ccCccchheecccc----eEeeeccCCCceEEEecCCcchhhhccccchhhhh
Confidence 34455677877653 3336678998 6999986655 5566679998653
No 247
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=22.05 E-value=29 Score=17.21 Aligned_cols=28 Identities=18% Similarity=0.605 Sum_probs=16.1
Q ss_pred cCCCCcccHhhHHHHhccCccccccCccee
Q 033086 96 VPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 96 ~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..||++||..-.-+ +....|..|..++.
T Consensus 5 ~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 5 PKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp TTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 46888888553221 23457888876553
No 248
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=22.01 E-value=1.2e+02 Score=15.90 Aligned_cols=32 Identities=13% Similarity=0.474 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS 114 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~ 114 (128)
.|.||-..-..+ ..+ .|..+|.+|-.+.++..
T Consensus 1 ~CiiC~~~~~~G----I~I-~~~fIC~~CE~~iv~~~ 32 (46)
T PF10764_consen 1 KCIICGKEKEEG----IHI-YGKFICSDCEKEIVNTE 32 (46)
T ss_pred CeEeCCCcCCCC----EEE-ECeEehHHHHHHhccCC
Confidence 388888776653 433 78889999988877543
No 249
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.71 E-value=80 Score=22.02 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=20.0
Q ss_pred CCCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 72 SGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 72 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
...+...|.+|-+. + .....|-|..|..| .|-
T Consensus 56 ~~~~~~~C~nCg~~----G--H~~~DCP~~iC~~C--~~~ 87 (190)
T COG5082 56 IREENPVCFNCGQN----G--HLRRDCPHSICYNC--SWD 87 (190)
T ss_pred ccccccccchhccc----C--cccccCChhHhhhc--CCC
Confidence 34566678888654 2 23445778888888 554
No 250
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=21.61 E-value=48 Score=24.32 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCCCCCCccccccccccccCCCCCCeEcCCCCcccHhhH----HHHhccCccccccCcce
Q 033086 69 GAGSGTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCI----STWISLSNSCPVCRSRC 124 (128)
Q Consensus 69 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci----~~w~~~~~~CP~Cr~~~ 124 (128)
.+.+...+..|+-|.+.+..| +...|....-..=| +.|-..+..|..|-++|
T Consensus 176 daRevk~eLyClrChD~mgip----iCgaC~rpIeervi~amgKhWHveHFvCa~CekPF 231 (332)
T KOG2272|consen 176 DAREVKGELYCLRCHDKMGIP----ICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPF 231 (332)
T ss_pred hhhhhccceeccccccccCCc----ccccccCchHHHHHHHhccccchhheeehhcCCcc
Confidence 333445566777777766554 32233322211111 23444556676666655
No 251
>PF05417 Peptidase_C41: Hepatitis E cysteine protease; InterPro: IPR008748 This entry represents the cysteine proteinase of hepatitis E virus, which is a papain-like protease that cleaves the viral polyprotein encoded by ORF1 of the hepatitis E virus (Porcine hemagglutinating encephalomyelitis virus) [, , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=21.50 E-value=39 Score=22.20 Aligned_cols=16 Identities=25% Similarity=0.889 Sum_probs=11.8
Q ss_pred CcccHhhHHHHhccCccc
Q 033086 100 HVFHAKCISTWISLSNSC 117 (128)
Q Consensus 100 H~f~~~Ci~~w~~~~~~C 117 (128)
+.|| |..+||.+.=+|
T Consensus 37 ~k~C--CfmrwLgQeCtC 52 (161)
T PF05417_consen 37 KKFC--CFMRWLGQECTC 52 (161)
T ss_pred hCce--ehhhhhcccceE
Confidence 4466 899999876555
No 252
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=21.08 E-value=36 Score=19.16 Aligned_cols=10 Identities=50% Similarity=1.202 Sum_probs=7.1
Q ss_pred cCccccccCc
Q 033086 113 LSNSCPVCRS 122 (128)
Q Consensus 113 ~~~~CP~Cr~ 122 (128)
....||.|..
T Consensus 14 ~~~~CP~Cgs 23 (61)
T PRK08351 14 TEDRCPVCGS 23 (61)
T ss_pred CCCcCCCCcC
Confidence 4457999965
No 253
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=20.88 E-value=65 Score=23.34 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=10.6
Q ss_pred HHHHhccCccccccCcce
Q 033086 107 ISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 107 i~~w~~~~~~CP~Cr~~~ 124 (128)
+..|.+.++-||.|.+++
T Consensus 92 l~~w~~~~~fC~~CG~~~ 109 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPM 109 (256)
T ss_pred HHHHhhcCccccccCCCC
Confidence 455666666666665544
No 254
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.83 E-value=51 Score=26.22 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=29.3
Q ss_pred ccccccccccccCC-CCCCeEcCCCCcccHhhHHHHhc----cC----ccccccCc
Q 033086 76 EGVCMVCMEDFDPQ-EFPGKQVPCGHVFHAKCISTWIS----LS----NSCPVCRS 122 (128)
Q Consensus 76 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~----~~----~~CP~Cr~ 122 (128)
...|.+|....... ...+..-.|+.-||..|.+...+ .. .-|-+|..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 34599999765432 23334446788999999875442 11 25777753
No 255
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=34 Score=18.33 Aligned_cols=9 Identities=44% Similarity=1.176 Sum_probs=5.0
Q ss_pred cccccCcce
Q 033086 116 SCPVCRSRC 124 (128)
Q Consensus 116 ~CP~Cr~~~ 124 (128)
.||+|..+|
T Consensus 14 ICpvCqRPF 22 (54)
T COG4338 14 ICPVCQRPF 22 (54)
T ss_pred hhhhhcCch
Confidence 466665554
Done!