Query 033086
Match_columns 128
No_of_seqs 175 out of 1535
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.7 1.5E-17 5E-22 92.1 4.1 52 74-126 3-55 (55)
2 1x4j_A Ring finger protein 38; 99.7 2.6E-17 8.8E-22 96.7 4.0 54 73-127 20-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.7 6.8E-17 2.3E-21 93.3 5.2 53 73-126 11-63 (69)
4 2ecm_A Ring finger and CHY zin 99.7 4.1E-17 1.4E-21 90.2 3.6 51 74-124 3-53 (55)
5 2l0b_A E3 ubiquitin-protein li 99.7 6.5E-17 2.2E-21 98.5 4.2 53 73-126 37-89 (91)
6 2ecl_A Ring-box protein 2; RNF 99.6 9.8E-17 3.4E-21 95.7 4.4 52 75-126 14-76 (81)
7 2ep4_A Ring finger protein 24; 99.6 1.1E-16 3.8E-21 93.7 4.3 51 74-125 13-63 (74)
8 2ect_A Ring finger protein 126 99.6 1.4E-16 4.6E-21 94.2 4.4 52 74-126 13-64 (78)
9 3ng2_A RNF4, snurf, ring finge 99.6 1.7E-16 5.7E-21 92.1 3.0 53 74-126 8-63 (71)
10 2ea6_A Ring finger protein 4; 99.6 2.6E-16 8.8E-21 90.7 3.4 52 74-125 13-67 (69)
11 2d8t_A Dactylidin, ring finger 99.6 5E-16 1.7E-20 90.2 4.3 48 74-125 13-60 (71)
12 3dpl_R Ring-box protein 1; ubi 99.6 5.2E-16 1.8E-20 96.9 4.6 52 75-126 36-101 (106)
13 1v87_A Deltex protein 2; ring- 99.6 7.7E-16 2.6E-20 97.1 4.7 50 76-125 25-93 (114)
14 2ysl_A Tripartite motif-contai 99.6 1.8E-15 6.1E-20 88.1 5.6 50 73-126 17-69 (73)
15 2djb_A Polycomb group ring fin 99.6 1.2E-15 4.1E-20 88.9 4.4 50 73-126 12-62 (72)
16 2ct2_A Tripartite motif protei 99.6 2.3E-15 7.8E-20 90.6 5.6 54 73-126 12-68 (88)
17 2csy_A Zinc finger protein 183 99.6 2E-15 6.7E-20 89.8 4.3 48 74-125 13-60 (81)
18 4ayc_A E3 ubiquitin-protein li 99.6 9.1E-16 3.1E-20 100.0 3.0 47 75-125 52-98 (138)
19 2xeu_A Ring finger protein 4; 99.6 1.3E-15 4.4E-20 86.4 3.2 51 75-125 2-55 (64)
20 2yur_A Retinoblastoma-binding 99.6 3E-15 1E-19 87.6 4.5 49 73-125 12-63 (74)
21 1chc_A Equine herpes virus-1 r 99.6 1.5E-15 5.3E-20 87.3 2.7 49 74-125 3-51 (68)
22 2ecy_A TNF receptor-associated 99.5 4.9E-15 1.7E-19 84.8 4.7 49 74-126 13-62 (66)
23 2ecn_A Ring finger protein 141 99.5 2.2E-15 7.5E-20 87.2 2.7 47 74-125 13-59 (70)
24 1t1h_A Gspef-atpub14, armadill 99.5 5.8E-15 2E-19 87.1 4.1 49 74-126 6-55 (78)
25 3lrq_A E3 ubiquitin-protein li 99.5 2.4E-15 8.1E-20 93.0 2.5 49 74-126 20-70 (100)
26 2egp_A Tripartite motif-contai 99.5 4E-15 1.4E-19 87.9 2.3 49 74-126 10-65 (79)
27 3ztg_A E3 ubiquitin-protein li 99.5 1.3E-14 4.5E-19 88.1 4.6 48 73-124 10-60 (92)
28 2ecw_A Tripartite motif-contai 99.5 1.9E-14 6.6E-19 85.8 5.3 49 74-126 17-71 (85)
29 2ysj_A Tripartite motif-contai 99.5 2.8E-14 9.5E-19 80.9 5.7 44 73-120 17-63 (63)
30 1g25_A CDK-activating kinase a 99.5 1.1E-14 3.7E-19 83.1 3.8 52 75-126 2-55 (65)
31 4a0k_B E3 ubiquitin-protein li 99.5 1.8E-15 6.3E-20 95.8 0.2 52 75-126 47-112 (117)
32 2y43_A E3 ubiquitin-protein li 99.5 1.2E-14 4.3E-19 89.4 3.1 49 74-126 20-69 (99)
33 2ecv_A Tripartite motif-contai 99.5 2.8E-14 9.5E-19 85.1 4.5 49 74-126 17-71 (85)
34 2ckl_A Polycomb group ring fin 99.5 1.8E-14 6.2E-19 90.0 3.7 48 74-125 13-61 (108)
35 3fl2_A E3 ubiquitin-protein li 99.5 1.6E-14 5.3E-19 92.4 2.9 49 74-126 50-99 (124)
36 4ap4_A E3 ubiquitin ligase RNF 99.5 2E-14 6.7E-19 92.4 3.2 52 74-125 5-59 (133)
37 2d8s_A Cellular modulator of i 99.5 4.7E-14 1.6E-18 83.8 4.3 51 74-126 13-70 (80)
38 2ecj_A Tripartite motif-contai 99.5 9.3E-14 3.2E-18 77.2 4.9 43 74-120 13-58 (58)
39 1e4u_A Transcriptional repress 99.4 1E-13 3.5E-18 82.0 5.0 53 73-125 8-61 (78)
40 3l11_A E3 ubiquitin-protein li 99.4 2.8E-14 9.5E-19 90.1 1.6 49 73-125 12-61 (115)
41 2ckl_B Ubiquitin ligase protei 99.4 5.8E-14 2E-18 93.8 2.5 48 74-125 52-101 (165)
42 3hct_A TNF receptor-associated 99.4 8.7E-14 3E-18 88.3 3.0 50 73-126 15-65 (118)
43 1wgm_A Ubiquitin conjugation f 99.4 4.3E-13 1.5E-17 82.5 6.0 49 74-126 20-69 (98)
44 2kr4_A Ubiquitin conjugation f 99.4 2.6E-13 8.9E-18 81.4 4.7 49 74-126 12-60 (85)
45 1z6u_A NP95-like ring finger p 99.4 9E-14 3.1E-18 91.8 2.9 49 74-126 76-125 (150)
46 1jm7_A BRCA1, breast cancer ty 99.4 7E-14 2.4E-18 87.6 2.2 48 75-126 20-70 (112)
47 2ct0_A Non-SMC element 1 homol 99.4 2.9E-13 1E-17 79.0 3.6 49 74-125 13-63 (74)
48 2kre_A Ubiquitin conjugation f 99.4 7E-13 2.4E-17 81.9 5.4 49 74-126 27-75 (100)
49 1rmd_A RAG1; V(D)J recombinati 99.4 1.8E-13 6.2E-18 86.4 2.5 48 74-125 21-69 (116)
50 1bor_A Transcription factor PM 99.3 1.3E-13 4.4E-18 76.5 1.0 47 74-127 4-50 (56)
51 4ap4_A E3 ubiquitin ligase RNF 99.3 2.6E-13 8.9E-18 87.1 2.4 52 74-125 70-124 (133)
52 3knv_A TNF receptor-associated 99.3 3.4E-13 1.2E-17 88.1 2.3 47 74-124 29-76 (141)
53 2vje_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 76.4 2.1 48 74-125 6-56 (64)
54 1jm7_B BARD1, BRCA1-associated 99.3 3.5E-13 1.2E-17 85.3 1.2 47 74-126 20-67 (117)
55 2vje_B MDM4 protein; proto-onc 99.3 1E-12 3.4E-17 74.6 2.1 48 74-125 5-55 (63)
56 2y1n_A E3 ubiquitin-protein li 99.3 2.3E-12 8E-17 96.1 4.2 46 76-125 332-378 (389)
57 4ic3_A E3 ubiquitin-protein li 99.3 9.3E-13 3.2E-17 77.0 1.3 43 75-125 23-66 (74)
58 3hcs_A TNF receptor-associated 99.2 5.4E-12 1.8E-16 84.6 3.0 49 73-125 15-64 (170)
59 2yu4_A E3 SUMO-protein ligase 99.2 6.2E-12 2.1E-16 76.7 2.9 46 74-123 5-59 (94)
60 2c2l_A CHIP, carboxy terminus 99.2 8.8E-12 3E-16 88.9 3.4 50 73-126 205-255 (281)
61 3k1l_B Fancl; UBC, ring, RWD, 99.1 1.2E-11 4.1E-16 90.6 2.2 55 73-127 305-374 (381)
62 2ecg_A Baculoviral IAP repeat- 99.1 1.3E-11 4.4E-16 72.2 1.6 43 75-125 24-67 (75)
63 2f42_A STIP1 homology and U-bo 99.1 3.9E-11 1.3E-15 81.0 3.6 49 74-126 104-153 (179)
64 1vyx_A ORF K3, K3RING; zinc-bi 99.1 9.5E-11 3.2E-15 65.7 3.5 49 74-126 4-59 (60)
65 2ea5_A Cell growth regulator w 99.0 2.2E-10 7.5E-15 65.8 4.1 44 74-125 13-57 (68)
66 2yho_A E3 ubiquitin-protein li 99.0 4.3E-11 1.5E-15 70.7 0.9 43 75-125 17-60 (79)
67 3htk_C E3 SUMO-protein ligase 99.0 3.3E-10 1.1E-14 80.3 4.1 50 73-126 178-232 (267)
68 1wim_A KIAA0161 protein; ring 98.9 3.7E-10 1.3E-14 68.6 2.5 49 74-123 3-61 (94)
69 3t6p_A Baculoviral IAP repeat- 98.9 2.4E-10 8.2E-15 84.4 1.3 44 74-125 293-337 (345)
70 2bay_A PRE-mRNA splicing facto 98.9 4.6E-10 1.6E-14 63.1 1.8 47 76-126 3-50 (61)
71 3vk6_A E3 ubiquitin-protein li 98.7 6.4E-09 2.2E-13 63.2 2.8 45 78-125 3-48 (101)
72 3nw0_A Non-structural maintena 98.3 5.6E-07 1.9E-11 63.3 4.0 49 74-125 178-228 (238)
73 2ko5_A Ring finger protein Z; 97.1 0.00056 1.9E-08 40.9 4.0 48 73-125 25-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0016 5.6E-08 39.2 2.2 36 75-111 2-38 (101)
75 2lri_C Autoimmune regulator; Z 96.0 0.0052 1.8E-07 34.5 2.9 45 75-123 11-59 (66)
76 1wil_A KIAA1045 protein; ring 95.4 0.024 8.1E-07 33.2 3.9 35 74-110 13-47 (89)
77 1we9_A PHD finger family prote 94.9 0.0045 1.6E-07 34.3 0.0 50 73-122 3-57 (64)
78 2l5u_A Chromodomain-helicase-D 94.6 0.02 6.9E-07 31.4 2.2 47 73-123 8-58 (61)
79 2yql_A PHD finger protein 21A; 93.3 0.012 4.1E-07 31.7 -0.4 46 73-122 6-55 (56)
80 1mm2_A MI2-beta; PHD, zinc fin 93.1 0.022 7.5E-07 31.3 0.5 46 74-123 7-56 (61)
81 3m62_A Ubiquitin conjugation f 93.0 0.079 2.7E-06 43.9 3.7 48 74-125 889-937 (968)
82 1f62_A Transcription factor WS 92.8 0.053 1.8E-06 28.4 1.8 44 78-122 2-49 (51)
83 3o36_A Transcription intermedi 92.6 0.027 9.2E-07 37.6 0.5 45 75-123 3-51 (184)
84 1fp0_A KAP-1 corepressor; PHD 91.4 0.095 3.3E-06 31.0 1.8 47 73-123 22-72 (88)
85 2k16_A Transcription initiatio 91.1 0.042 1.4E-06 31.3 0.1 50 74-124 16-69 (75)
86 3u5n_A E3 ubiquitin-protein li 90.9 0.031 1.1E-06 38.1 -0.7 46 74-123 5-54 (207)
87 1xwh_A Autoimmune regulator; P 90.6 0.042 1.4E-06 30.6 -0.2 45 74-122 6-54 (66)
88 2lbm_A Transcriptional regulat 90.3 0.29 9.8E-06 31.5 3.5 45 74-122 61-116 (142)
89 2puy_A PHD finger protein 21A; 90.2 0.037 1.2E-06 30.2 -0.7 45 75-123 4-52 (60)
90 2ku3_A Bromodomain-containing 89.5 0.1 3.4E-06 29.5 0.8 50 73-122 13-65 (71)
91 2xb1_A Pygopus homolog 2, B-ce 89.3 0.03 1E-06 34.2 -1.7 51 76-126 3-64 (105)
92 3v43_A Histone acetyltransfera 89.3 0.1 3.5E-06 32.0 0.8 45 78-122 63-111 (112)
93 2lv9_A Histone-lysine N-methyl 89.2 0.13 4.5E-06 30.9 1.2 46 75-122 27-75 (98)
94 1wep_A PHF8; structural genomi 88.5 0.25 8.7E-06 28.3 2.0 49 74-123 10-63 (79)
95 3lqh_A Histone-lysine N-methyl 88.2 0.14 4.9E-06 34.3 1.0 47 77-123 3-63 (183)
96 2vpb_A Hpygo1, pygopus homolog 88.1 0.28 9.7E-06 27.1 2.0 35 74-108 6-41 (65)
97 2ro1_A Transcription intermedi 88.0 0.13 4.4E-06 34.6 0.6 43 77-123 3-49 (189)
98 2ysm_A Myeloid/lymphoid or mix 87.9 0.19 6.5E-06 30.6 1.3 38 74-112 5-42 (111)
99 1weo_A Cellulose synthase, cat 87.7 1.1 3.8E-05 26.3 4.4 51 75-125 15-69 (93)
100 2kgg_A Histone demethylase jar 87.1 0.31 1.1E-05 25.6 1.7 44 78-121 4-52 (52)
101 1y02_A CARP2, FYVE-ring finger 86.8 0.066 2.3E-06 33.5 -1.3 47 75-121 18-64 (120)
102 1wfk_A Zinc finger, FYVE domai 86.0 0.5 1.7E-05 27.7 2.4 38 73-110 6-43 (88)
103 2ri7_A Nucleosome-remodeling f 86.0 0.29 9.9E-06 32.1 1.4 48 74-122 6-58 (174)
104 1z60_A TFIIH basal transcripti 85.4 0.31 1E-05 26.5 1.1 42 78-120 17-58 (59)
105 2e6r_A Jumonji/ARID domain-con 85.3 0.096 3.3E-06 31.1 -1.1 48 74-122 14-65 (92)
106 1joc_A EEA1, early endosomal a 84.8 0.55 1.9E-05 29.4 2.2 36 75-110 68-103 (125)
107 3i2d_A E3 SUMO-protein ligase 84.2 0.65 2.2E-05 34.5 2.7 47 76-126 249-300 (371)
108 3t7l_A Zinc finger FYVE domain 84.0 0.66 2.2E-05 27.3 2.2 37 75-111 19-55 (90)
109 2l43_A N-teminal domain from h 83.9 0.23 7.7E-06 29.2 0.2 49 74-122 23-74 (88)
110 1z2q_A LM5-1; membrane protein 83.9 0.87 3E-05 26.3 2.7 37 74-110 19-55 (84)
111 2yw8_A RUN and FYVE domain-con 83.8 0.71 2.4E-05 26.5 2.3 37 74-110 17-53 (82)
112 4fo9_A E3 SUMO-protein ligase 83.6 0.73 2.5E-05 34.1 2.8 47 76-126 215-266 (360)
113 3v43_A Histone acetyltransfera 82.9 2.1 7.3E-05 26.0 4.4 34 75-108 4-42 (112)
114 1weu_A Inhibitor of growth fam 81.7 1.3 4.6E-05 26.1 3.0 47 74-123 34-85 (91)
115 1x4u_A Zinc finger, FYVE domai 81.7 1 3.5E-05 26.0 2.4 36 74-109 12-47 (84)
116 2yt5_A Metal-response element- 81.4 0.57 1.9E-05 25.6 1.2 50 74-123 4-61 (66)
117 1wem_A Death associated transc 81.3 0.53 1.8E-05 26.6 1.1 46 76-123 16-70 (76)
118 3ql9_A Transcriptional regulat 81.2 1.4 4.9E-05 27.7 3.1 45 74-122 55-110 (129)
119 1wee_A PHD finger family prote 81.0 0.2 6.9E-06 28.2 -0.8 49 74-123 14-66 (72)
120 3asl_A E3 ubiquitin-protein li 80.7 0.19 6.4E-06 28.3 -1.0 45 78-123 20-69 (70)
121 1vfy_A Phosphatidylinositol-3- 80.7 1.1 3.6E-05 25.2 2.2 33 77-109 12-44 (73)
122 3mpx_A FYVE, rhogef and PH dom 79.9 0.36 1.2E-05 36.0 0.0 51 75-125 374-431 (434)
123 3mjh_B Early endosome antigen 79.7 0.51 1.7E-05 22.7 0.5 15 74-88 3-17 (34)
124 1x64_A Alpha-actinin-2 associa 79.5 2.7 9.2E-05 24.1 3.8 28 75-106 24-51 (89)
125 2e6s_A E3 ubiquitin-protein li 79.5 0.24 8.1E-06 28.4 -0.8 44 78-122 28-76 (77)
126 1x62_A C-terminal LIM domain p 79.4 1.5 5.3E-05 24.5 2.7 29 75-107 14-42 (79)
127 3shb_A E3 ubiquitin-protein li 79.3 0.2 6.8E-06 28.8 -1.2 44 78-122 28-76 (77)
128 2cs3_A Protein C14ORF4, MY039 78.8 1.1 3.9E-05 25.8 1.9 36 74-113 13-52 (93)
129 2a20_A Regulating synaptic mem 78.5 0.19 6.5E-06 27.3 -1.4 50 73-122 6-59 (62)
130 1dvp_A HRS, hepatocyte growth 78.4 0.98 3.4E-05 30.8 1.9 35 76-110 161-195 (220)
131 3o70_A PHD finger protein 13; 78.3 0.36 1.2E-05 26.9 -0.3 47 74-122 17-66 (68)
132 3ask_A E3 ubiquitin-protein li 77.2 0.62 2.1E-05 32.2 0.6 44 78-122 176-224 (226)
133 1wew_A DNA-binding family prot 77.2 0.64 2.2E-05 26.5 0.5 47 74-122 14-71 (78)
134 2o35_A Hypothetical protein DU 77.1 0.88 3E-05 27.3 1.1 12 101-112 42-53 (105)
135 3fyb_A Protein of unknown func 76.9 0.89 3.1E-05 27.2 1.1 12 101-112 41-52 (104)
136 3zyq_A Hepatocyte growth facto 75.9 1.2 4.2E-05 30.5 1.8 35 76-110 164-198 (226)
137 2gmg_A Hypothetical protein PF 75.7 0.68 2.3E-05 28.1 0.4 26 94-124 69-94 (105)
138 1zbd_B Rabphilin-3A; G protein 75.5 1.1 3.9E-05 28.3 1.4 49 74-122 53-106 (134)
139 1wen_A Inhibitor of growth fam 74.3 1.5 5E-05 24.6 1.5 45 74-123 14-65 (71)
140 2dar_A PDZ and LIM domain prot 74.3 2.1 7.3E-05 24.6 2.3 29 75-107 24-52 (90)
141 2kwj_A Zinc finger protein DPF 73.5 2.2 7.4E-05 26.0 2.3 33 78-110 3-41 (114)
142 1wev_A Riken cDNA 1110020M19; 72.9 0.34 1.1E-05 28.4 -1.5 49 75-123 15-72 (88)
143 4gne_A Histone-lysine N-methyl 72.9 1.5 5.1E-05 26.7 1.4 31 74-108 13-45 (107)
144 2co8_A NEDD9 interacting prote 70.3 3.5 0.00012 23.2 2.6 31 74-107 13-43 (82)
145 2zet_C Melanophilin; complex, 69.1 3.3 0.00011 26.8 2.5 48 74-122 66-116 (153)
146 2pv0_B DNA (cytosine-5)-methyl 67.8 4.8 0.00016 30.0 3.4 33 76-112 93-127 (386)
147 1wd2_A Ariadne-1 protein homol 67.1 1 3.5E-05 24.4 -0.2 38 77-114 7-48 (60)
148 3a1b_A DNA (cytosine-5)-methyl 65.9 4 0.00014 26.6 2.4 35 75-113 78-114 (159)
149 2d8z_A Four and A half LIM dom 65.6 4.5 0.00016 21.7 2.4 31 77-110 32-62 (70)
150 1nyp_A Pinch protein; LIM doma 64.5 3.2 0.00011 22.1 1.6 26 77-106 6-31 (66)
151 2d8x_A Protein pinch; LIM doma 64.3 2.7 9.2E-05 22.8 1.2 12 99-110 51-62 (70)
152 2cor_A Pinch protein; LIM doma 64.2 5.1 0.00018 22.3 2.5 11 77-87 16-26 (79)
153 2jmo_A Parkin; IBR, E3 ligase, 61.6 0.61 2.1E-05 26.7 -1.9 15 97-111 55-69 (80)
154 2d8v_A Zinc finger FYVE domain 61.4 5.5 0.00019 22.0 2.0 33 73-110 5-38 (67)
155 1x4l_A Skeletal muscle LIM-pro 61.2 5.7 0.00019 21.5 2.2 10 78-87 7-16 (72)
156 2cur_A Skeletal muscle LIM-pro 60.0 4 0.00014 21.9 1.4 31 77-110 32-62 (69)
157 2rsd_A E3 SUMO-protein ligase 59.3 0.83 2.9E-05 25.3 -1.6 47 74-122 8-64 (68)
158 2xjy_A Rhombotin-2; oncoprotei 58.4 11 0.00037 23.0 3.4 47 77-124 30-76 (131)
159 3kqi_A GRC5, PHD finger protei 57.4 2.8 9.6E-05 23.5 0.5 45 79-123 12-61 (75)
160 2cu8_A Cysteine-rich protein 2 57.4 4.5 0.00015 22.2 1.3 28 76-106 9-36 (76)
161 1wig_A KIAA1808 protein; LIM d 57.3 5.8 0.0002 21.7 1.8 33 77-111 32-64 (73)
162 2l4z_A DNA endonuclease RBBP8, 57.1 7.3 0.00025 23.9 2.4 41 74-125 59-99 (123)
163 2dj7_A Actin-binding LIM prote 56.6 6 0.00021 22.1 1.8 39 75-124 14-52 (80)
164 2jvx_A NF-kappa-B essential mo 55.6 3.5 0.00012 18.8 0.5 10 114-123 3-12 (28)
165 1wyh_A SLIM 2, skeletal muscle 55.5 6.5 0.00022 21.2 1.8 10 99-108 53-62 (72)
166 3kv5_D JMJC domain-containing 55.2 2.6 9E-05 32.4 0.1 48 75-123 36-88 (488)
167 1g47_A Pinch protein; LIM doma 53.9 7.8 0.00027 21.1 2.0 29 76-106 11-39 (77)
168 1x6a_A LIMK-2, LIM domain kina 53.8 5.9 0.0002 22.0 1.5 13 99-111 63-75 (81)
169 2fiy_A Protein FDHE homolog; F 52.9 1.4 4.9E-05 31.8 -1.6 45 74-122 180-230 (309)
170 1x68_A FHL5 protein; four-and- 52.9 5.3 0.00018 22.0 1.1 30 77-106 6-35 (76)
171 2jne_A Hypothetical protein YF 50.8 5.7 0.00019 23.7 1.0 42 76-126 32-73 (101)
172 1m3v_A FLIN4, fusion of the LI 50.4 9.4 0.00032 23.1 2.1 48 77-125 33-80 (122)
173 2cuq_A Four and A half LIM dom 49.9 7.2 0.00025 21.5 1.4 9 78-86 17-25 (80)
174 1v6g_A Actin binding LIM prote 49.0 5.4 0.00018 22.2 0.8 26 78-107 17-42 (81)
175 2vnf_A ING 4, P29ING4, inhibit 48.9 2.6 8.8E-05 22.6 -0.6 43 75-122 9-58 (60)
176 2l3k_A Rhombotin-2, linker, LI 48.6 7.4 0.00025 23.7 1.4 34 76-111 36-69 (123)
177 3c6w_A P28ING5, inhibitor of g 48.3 2.7 9.2E-05 22.5 -0.6 46 74-122 7-57 (59)
178 2jrp_A Putative cytoplasmic pr 48.3 1.1 3.9E-05 25.8 -2.2 12 77-88 3-14 (81)
179 2dlo_A Thyroid receptor-intera 46.8 6.3 0.00021 21.9 0.8 9 78-86 43-51 (81)
180 1x63_A Skeletal muscle LIM-pro 46.6 10 0.00034 21.0 1.7 28 77-106 16-43 (82)
181 3o7a_A PHD finger protein 13 v 46.3 2.2 7.6E-05 22.1 -1.1 41 81-122 8-51 (52)
182 1x3h_A Leupaxin; paxillin fami 44.9 6.9 0.00024 21.6 0.8 10 78-87 17-26 (80)
183 1loi_A Cyclic 3',5'-AMP specif 44.6 1.2 4.3E-05 19.2 -1.8 12 101-112 6-17 (26)
184 1iml_A CRIP, cysteine rich int 44.0 6.4 0.00022 21.6 0.5 44 76-124 27-71 (76)
185 2ct7_A Ring finger protein 31; 43.8 1.5 5.1E-05 25.3 -2.3 32 79-110 28-61 (86)
186 2g6q_A Inhibitor of growth pro 43.5 3.5 0.00012 22.3 -0.6 45 75-122 10-59 (62)
187 2d8y_A Eplin protein; LIM doma 43.4 14 0.00048 21.0 2.0 12 99-110 62-73 (91)
188 1rut_X Flinc4, fusion protein 42.9 11 0.00038 24.6 1.7 47 77-124 33-79 (188)
189 1x4k_A Skeletal muscle LIM-pro 42.8 9.1 0.00031 20.5 1.1 10 78-87 7-16 (72)
190 2lcq_A Putative toxin VAPC6; P 42.5 11 0.00038 24.1 1.6 26 93-124 133-158 (165)
191 1a7i_A QCRP2 (LIM1); LIM domai 42.5 6.4 0.00022 21.9 0.4 8 79-86 10-17 (81)
192 1zfo_A LAsp-1; LIM domain, zin 42.4 11 0.00038 17.1 1.2 27 77-106 4-30 (31)
193 2jny_A Uncharacterized BCR; st 42.4 5.5 0.00019 22.0 0.1 10 115-124 11-20 (67)
194 1l8d_A DNA double-strand break 42.2 6.9 0.00024 23.4 0.5 12 114-125 47-58 (112)
195 2csz_A Synaptotagmin-like prot 39.3 24 0.00084 19.9 2.5 35 73-107 22-57 (76)
196 2egq_A FHL1 protein; LIM domai 37.4 11 0.00038 20.5 0.9 40 77-124 16-56 (77)
197 1lv3_A Hypothetical protein YA 37.4 11 0.00036 21.0 0.7 12 114-125 9-20 (68)
198 2kpi_A Uncharacterized protein 36.2 4.6 0.00016 21.5 -0.9 11 115-125 11-21 (56)
199 2ehe_A Four and A half LIM dom 36.2 16 0.00056 20.1 1.5 28 77-106 16-43 (82)
200 3kv4_A PHD finger protein 8; e 33.8 6.2 0.00021 30.0 -0.8 46 78-123 6-56 (447)
201 2xqn_T Testin, TESS; metal-bin 32.5 39 0.0013 20.2 2.9 44 77-125 31-74 (126)
202 1j2o_A FLIN2, fusion of rhombo 31.4 26 0.00088 20.8 1.9 38 76-114 30-67 (114)
203 3f6q_B LIM and senescent cell 31.2 16 0.00056 19.3 0.9 39 76-124 11-49 (72)
204 2cup_A Skeletal muscle LIM-pro 28.5 24 0.00081 20.2 1.3 44 77-125 34-77 (101)
205 2iyb_E Testin, TESS, TES; LIM 28.0 17 0.00058 19.1 0.6 10 78-87 4-13 (65)
206 2jrr_A Uncharacterized protein 27.4 21 0.00071 19.7 0.8 12 116-127 42-53 (67)
207 2kdx_A HYPA, hydrogenase/ureas 25.9 26 0.00088 21.2 1.2 24 94-123 75-99 (119)
208 2roo_A Neurotoxin MAGI-4; spid 25.4 3.2 0.00011 20.5 -2.4 16 104-119 18-33 (43)
209 4g9i_A Hydrogenase maturation 25.3 33 0.0011 27.9 2.0 52 74-125 104-189 (772)
210 2jz8_A Uncharacterized protein 24.8 27 0.00094 20.3 1.1 14 115-128 49-62 (87)
211 3ttc_A HYPF, transcriptional r 24.4 31 0.0011 27.5 1.7 51 74-124 15-99 (657)
212 1wvk_A AT2G23090/F21P24.15; st 24.2 19 0.00064 20.9 0.3 12 74-85 43-54 (86)
213 2lq6_A Bromodomain-containing 24.0 50 0.0017 18.9 2.1 35 74-110 15-51 (87)
214 2rgt_A Fusion of LIM/homeobox 23.8 83 0.0028 19.9 3.4 43 76-124 33-75 (169)
215 1qdp_A Robustoxin; neurotoxin, 22.4 3.4 0.00011 20.3 -2.7 15 104-118 18-32 (42)
216 3vhs_A ATPase wrnip1; zinc fin 22.2 21 0.00072 15.7 0.2 11 76-86 6-16 (29)
217 4ayb_P DNA-directed RNA polyme 21.6 12 0.0004 19.2 -0.9 10 115-124 24-33 (48)
218 4gut_A Lysine-specific histone 21.5 50 0.0017 26.7 2.3 38 76-113 13-56 (776)
219 1wfh_A Zinc finger (AN1-like) 21.4 36 0.0012 18.6 1.0 7 117-123 18-24 (64)
220 3vth_A Hydrogenase maturation 21.0 38 0.0013 27.5 1.5 51 74-124 109-193 (761)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.69 E-value=1.5e-17 Score=92.07 Aligned_cols=52 Identities=31% Similarity=0.924 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCCCCeEcC-CCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
++...|+||++.+..+ .....++ |||.||..||.+|++.+.+||+||+++.+
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 4567899999999873 3456666 99999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=96.71 Aligned_cols=54 Identities=37% Similarity=0.941 Sum_probs=46.3
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceeeC
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCIIS 127 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 127 (128)
..+...|+||++.|..+ ..+..++|+|.||..||.+|++.+.+||+||+.+..+
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 35677899999999873 4557789999999999999999999999999988653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=93.35 Aligned_cols=53 Identities=28% Similarity=0.797 Sum_probs=45.2
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
......|+||++.+.. ......++|||.||..||..|+..+.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3566789999999976 3456788999999999999999988999999998753
No 4
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.66 E-value=4.1e-17 Score=90.20 Aligned_cols=51 Identities=25% Similarity=0.757 Sum_probs=44.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.....|+||++.+..++.....++|+|.||..||.+|++.+.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 456789999999976556678899999999999999999889999999765
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=98.46 Aligned_cols=53 Identities=32% Similarity=0.761 Sum_probs=45.7
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
......|+||++.|.. +.....++|||.||..||..|++.+.+||+||+++..
T Consensus 37 ~~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3567789999999987 4456778999999999999999999999999998753
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.8e-17 Score=95.69 Aligned_cols=52 Identities=29% Similarity=0.669 Sum_probs=40.7
Q ss_pred CccccccccccccC----------CCCCC-eEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 75 TEGVCMVCMEDFDP----------QEFPG-KQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~----------~~~~~-~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
++..|+||++.|.. .+... ...+|+|.||..||.+|++.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45568888888754 23333 444599999999999999999999999998764
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=93.67 Aligned_cols=51 Identities=35% Similarity=0.952 Sum_probs=43.9
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.....|+||++.+..+ .....++|+|.||..||.+|++.+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 5567899999999874 44566799999999999999998889999998764
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1.4e-16 Score=94.19 Aligned_cols=52 Identities=38% Similarity=0.850 Sum_probs=44.7
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.....|+||++.|..+ .....++|+|.||..||.+|++.+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 5667899999999873 355678999999999999999988999999998753
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.62 E-value=1.7e-16 Score=92.06 Aligned_cols=53 Identities=26% Similarity=0.642 Sum_probs=45.5
Q ss_pred CCccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ +.....++|||.||..||.+|++.+.+||+||+++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 5677899999999653 3455788999999999999999999999999998753
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=90.66 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=44.6
Q ss_pred CCccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+..+ ...+..++|||.||..||..|+..+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 5677899999999764 234478899999999999999998899999998875
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=90.24 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+..+ ..++|||.||..||..|+..+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 5667899999998775 77899999999999999998899999998874
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.61 E-value=5.2e-16 Score=96.91 Aligned_cols=52 Identities=25% Similarity=0.550 Sum_probs=43.6
Q ss_pred CccccccccccccCC--------------CCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQ--------------EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
++..|+||++.|..+ +..+..++|+|.||..||.+|+..+.+||+||++|.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 456799999998753 1235678999999999999999999999999998764
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.60 E-value=7.7e-16 Score=97.09 Aligned_cols=50 Identities=30% Similarity=0.686 Sum_probs=40.8
Q ss_pred ccccccccccccCCC--------------CCCeEcCCCCcccHhhHHHHh-----ccCccccccCccee
Q 033086 76 EGVCMVCMEDFDPQE--------------FPGKQVPCGHVFHAKCISTWI-----SLSNSCPVCRSRCI 125 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~--------------~~~~~~~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~~~~ 125 (128)
+..|+||++.|..+. ..+..++|+|.||..||..|+ ..+.+||+||+.+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999996542 233478999999999999999 45679999999874
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=88.15 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---cCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---LSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~~~~ 126 (128)
..+...|+||++.+..+ ..++|||.||..||..|++ ....||+||+++..
T Consensus 17 ~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 35678899999999875 7789999999999999996 45589999998764
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=88.88 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhccCccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
..+...|+||++.+..+ ..+ +|||.||..||..|+..+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA----TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSSCCSSC----EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred cCCCCCCCCCChHHHCc----CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 35678899999999875 555 999999999999999888899999998753
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=90.60 Aligned_cols=54 Identities=28% Similarity=0.620 Sum_probs=45.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC---ccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS---NSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr~~~~~ 126 (128)
..+...|+||++.|.........++|||.||..|+..|+..+ ..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 356788999999998744445888999999999999999865 689999998754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=89.82 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.....|+||++.+..+ ..++|||.||..||..|+.....||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999775 77999999999999999998889999998763
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.57 E-value=9.1e-16 Score=99.99 Aligned_cols=47 Identities=32% Similarity=0.801 Sum_probs=42.3
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
++..|+||++.|..+ +.++|||.||..||..|+..+.+||+||+++.
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456799999999876 78899999999999999999999999998764
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=86.44 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=43.6
Q ss_pred CccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+...|+||++.+..+ ......++|||.||..|+.+|++.+.+||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 456899999999653 345578899999999999999999899999999875
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=87.64 Aligned_cols=49 Identities=27% Similarity=0.699 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCCCCCeEcC-CCCcccHhhHHHHhccC--ccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLS--NSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 125 (128)
..+...|+||++.|..+ ..++ |||.||..||..|+..+ ..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 35678899999999886 7789 99999999999999755 68999999754
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.55 E-value=1.5e-15 Score=87.30 Aligned_cols=49 Identities=33% Similarity=0.796 Sum_probs=42.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+....|+||++.+..+ ...++|||.||..|+.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4566899999998663 378899999999999999998899999998764
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.9e-15 Score=84.79 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ ..++|||.||..||..|+. ....||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5678899999999876 5579999999999999994 56689999998753
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-15 Score=87.16 Aligned_cols=47 Identities=36% Similarity=0.898 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+.. ..++|||.||..|+.+|+..+.+||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 567789999999765 77899999999999999998899999998764
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.53 E-value=5.8e-15 Score=87.09 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=43.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..+ ..++|||.||..||..|+.. +.+||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 5678899999999886 77899999999999999986 7799999998753
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.53 E-value=2.4e-15 Score=93.00 Aligned_cols=49 Identities=24% Similarity=0.682 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCCCCeE-cCCCCcccHhhHHHHhccC-ccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQ-VPCGHVFHAKCISTWISLS-NSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..+ +. ++|||.||..||..|+... ..||+||+++..
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4567899999999876 66 9999999999999999877 699999998754
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.51 E-value=4e-15 Score=87.87 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-------CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-------SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ ..++|||.||..|+..|+.. ...||+||+++..
T Consensus 10 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 5678899999999876 56899999999999999976 5689999998753
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=88.11 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCCCCCeEcC-CCCcccHhhHHHHhccC--ccccccCcce
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLS--NSCPVCRSRC 124 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~ 124 (128)
..+...|+||++.|..+ ..++ |||.||..||..|+... ..||+||+++
T Consensus 10 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 35678999999999886 7889 99999999999999643 5899999986
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.9e-14 Score=85.76 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc------CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL------SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ ..++|||.||..|+..|+.. ...||+||+++..
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5677899999999876 68899999999999999976 6689999998753
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=80.86 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=38.3
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---cCcccccc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---LSNSCPVC 120 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~C 120 (128)
..+...|+||++.+..+ ..++|||.||..||.+|++ ...+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678899999999876 7789999999999999997 45589998
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.1e-14 Score=83.09 Aligned_cols=52 Identities=17% Similarity=0.439 Sum_probs=41.7
Q ss_pred Cccccccccc-cccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCcceee
Q 033086 75 TEGVCMVCME-DFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~~ 126 (128)
++..|+||++ .+..+......++|||.||..||.+|+. ....||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3567999999 7877544446789999999999999975 44689999998753
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.50 E-value=1.8e-15 Score=95.79 Aligned_cols=52 Identities=25% Similarity=0.550 Sum_probs=0.9
Q ss_pred CccccccccccccCC--------------CCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQ--------------EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+..|+||++.|..+ +..+..++|+|.||..||.+|++.+.+||+||++|.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 346799999999652 1233446899999999999999999999999998764
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=89.41 Aligned_cols=49 Identities=24% Similarity=0.606 Sum_probs=42.4
Q ss_pred CCccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ ..+ +|||.||..|+..|+..+.+||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA----MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc----CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3456899999999875 555 899999999999999988999999987753
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=85.08 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc------CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL------SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.+..+ ..++|||.||..|+..|+.. ...||+||+.+..
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5677899999999875 66799999999999999976 6789999988753
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=1.8e-14 Score=90.04 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=42.6
Q ss_pred CCccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+..+ ..+ +|||.||..||..|+..+..||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA----TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc----CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4567899999999875 665 99999999999999998899999998875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=92.43 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..+ ..++|||.||..||..|+..+. .||+||+++..
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4557899999999886 7889999999999999997544 89999998753
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.47 E-value=2e-14 Score=92.37 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=45.2
Q ss_pred CCccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.|..+ +..+..++|||.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4567899999999764 445588999999999999999999999999999875
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-14 Score=83.78 Aligned_cols=51 Identities=29% Similarity=0.822 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCCCCeEcCCC-----CcccHhhHHHHhccC--ccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCG-----HVFHAKCISTWISLS--NSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~~ 126 (128)
.+...|.||++++..+ .. .++||. |.||..||.+|+..+ .+||+||..+.+
T Consensus 13 ~~~~~C~IC~~~~~~~-~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDE-SP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSS-SC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCC-Ce-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 5567899999998753 23 568996 999999999999765 489999998865
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.3e-14 Score=77.22 Aligned_cols=43 Identities=37% Similarity=0.916 Sum_probs=37.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---cCcccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---LSNSCPVC 120 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~C 120 (128)
.+...|+||++.+..+ ..++|||.||..||..|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 5677899999999876 6689999999999999954 55689998
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.45 E-value=1e-13 Score=81.96 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=40.5
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
.+++..|+||++.+...+.....++|||.||..|+..|+. ....||.||+++.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3567889999999865332222345999999999999874 4568999999875
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=90.10 Aligned_cols=49 Identities=31% Similarity=0.683 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-CccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 125 (128)
..++..|+||++.+..+ ..++|||.||..||..|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 35678899999999876 78899999999999999976 568999999864
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.41 E-value=5.8e-14 Score=93.84 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhcc-CccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISL-SNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 125 (128)
.....|+||++.|..+ ..+ +|||.||..||..|+.. ...||+||+++.
T Consensus 52 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT----MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCc----CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567899999999875 554 99999999999999986 678999998873
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.41 E-value=8.7e-14 Score=88.26 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=43.5
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 126 (128)
..+...|+||++.+..+ +.++|||.||..||..|+.... +||+||+++..
T Consensus 15 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 46778999999999876 7789999999999999997665 99999988753
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.40 E-value=4.3e-13 Score=82.54 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCCCCeEcCCC-CcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCG-HVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+.+.|+||++.|..| ++++|| |+||+.||.+|+..+.+||+||+++..
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 5678999999999997 889999 999999999999988899999998753
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.40 E-value=2.6e-13 Score=81.45 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=44.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..| +.++|||+|++.||..|+..+.+||+||+++..
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4678899999999997 889999999999999999988899999988753
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.40 E-value=9e-14 Score=91.78 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=42.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..+ ..++|||.||..||..|+.... .||+||.++..
T Consensus 76 ~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3557899999999886 7799999999999999998654 89999998753
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=7e-14 Score=87.63 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=40.6
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc---cccccCcceee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN---SCPVCRSRCII 126 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~---~CP~Cr~~~~~ 126 (128)
....|+||++.+..+ ..++|||.||..||..|+..+. +||+||+++..
T Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456799999999875 6689999999999999997653 89999987753
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=79.00 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC--ccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS--NSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 125 (128)
+....|+||.+.+..+. ....|+|.||..||.+||+.+ .+||+||+.|.
T Consensus 13 ~~i~~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 55678999999998642 333899999999999999877 78999999875
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.37 E-value=7e-13 Score=81.88 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..| +.++|||+||+.||..|+..+.+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4678899999999997 889999999999999999988899999998753
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=1.8e-13 Score=86.44 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-CccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-SNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+..+ ..++|||.||..||..|+.. ..+||+||+++.
T Consensus 21 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 3467899999999876 77899999999999999986 679999999875
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=1.3e-13 Score=76.47 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceeeC
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCIIS 127 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~~ 127 (128)
.+...|+||++.|..+ ..++|||.||..|+..| ...||+||+.+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 5667899999999876 77899999999999774 56899999987653
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=2.6e-13 Score=87.06 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=44.3
Q ss_pred CCccccccccccccCC---CCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|+||++.+..+ ......++|||.||..||.+|++.+++||+||+++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 5677899999999653 334478899999999999999999999999998875
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.33 E-value=3.4e-13 Score=88.13 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~ 124 (128)
.+...|+||++.+..+ +.++|||.||..||..|+.... +||+||+++
T Consensus 29 ~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5778899999999886 7789999999999999998664 899999864
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.32 E-value=4.2e-13 Score=76.40 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCCCCeEc--CCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.++..|.||++.+... ..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4566899999987663 544 99999 899999999988889999999764
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=3.5e-13 Score=85.35 Aligned_cols=47 Identities=28% Similarity=0.624 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhccCccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
.+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||+++..
T Consensus 20 ~~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 3567799999999876 666 9999999999999987 789999998743
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=1e-12 Score=74.57 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCCCCeEc--CCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.....|.||++.+... ..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG----NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE----EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe----EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4567899999987653 444 99998 999999999988889999999764
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.27 E-value=2.3e-12 Score=96.09 Aligned_cols=46 Identities=30% Similarity=0.837 Sum_probs=40.9
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
...|+||++.+..+ ..++|||.||..|+..|+. ...+||+||+++.
T Consensus 332 ~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46899999998775 8899999999999999998 6789999999764
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.26 E-value=9.3e-13 Score=76.98 Aligned_cols=43 Identities=30% Similarity=0.750 Sum_probs=37.6
Q ss_pred CccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+...|+||++.+..+ ..++|||. ||..|+..| ..||+||+++.
T Consensus 23 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 456799999998775 78899999 999999998 78999998764
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=5.4e-12 Score=84.59 Aligned_cols=49 Identities=29% Similarity=0.570 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc-cccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN-SCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 125 (128)
..+...|+||++.+..+ +.++|||.||..||.+|+..+. +||+||+++.
T Consensus 15 ~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 36778999999999886 7789999999999999997544 9999998765
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.2e-12 Score=76.71 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=39.8
Q ss_pred CCccccccccccccCCCCCCeEcC-CCCcccHhhHHHHhccC------ccccc--cCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVP-CGHVFHAKCISTWISLS------NSCPV--CRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~------~~CP~--Cr~~ 123 (128)
.....|+||++.|..| +.++ |||+||+.||..|+..+ .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 5678899999999987 7885 99999999999999753 48999 9865
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.18 E-value=8.8e-12 Score=88.92 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC-ccccccCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS-NSCPVCRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~ 126 (128)
......|+||++.|..| ++++|||+||+.||..|+..+ .+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34678899999999997 889999999999999999754 459999998753
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.13 E-value=1.2e-11 Score=90.55 Aligned_cols=55 Identities=22% Similarity=0.468 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCCCC----eEcCCCCcccHhhHHHHhccC-----------ccccccCcceeeC
Q 033086 73 GTTEGVCMVCMEDFDPQEFPG----KQVPCGHVFHAKCISTWISLS-----------NSCPVCRSRCIIS 127 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~----~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~~~~ 127 (128)
.+...+|+||++.+...+... ....|+|.||..||.+|++.. ++||+||+++..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 356778999999997633222 235799999999999999642 4799999988643
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-11 Score=72.22 Aligned_cols=43 Identities=30% Similarity=0.762 Sum_probs=35.7
Q ss_pred CccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+...|+||++.+..+ ..++|||. ||..|+.. ...||+||+++.
T Consensus 24 ~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 345799999998775 77899999 99999964 368999998764
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.11 E-value=3.9e-11 Score=81.04 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC-ccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS-NSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~~ 126 (128)
.....|+||++.|..| ++++|||+|++.||..|+... .+||+||.++..
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 5678999999999987 888999999999999999754 479999998753
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.07 E-value=9.5e-11 Score=65.70 Aligned_cols=49 Identities=27% Similarity=0.742 Sum_probs=38.3
Q ss_pred CCccccccccccccCCCCCCeEcCCC--C---cccHhhHHHHhcc--CccccccCcceee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCG--H---VFHAKCISTWISL--SNSCPVCRSRCII 126 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~f~~~Ci~~w~~~--~~~CP~Cr~~~~~ 126 (128)
++...|.||++.... . ..+||. + .||..||.+|+.. +.+||+||.+|.+
T Consensus 4 ~~~~~CrIC~~~~~~---~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGN---E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSC---C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCC---c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456789999998433 2 358865 3 8999999999964 5689999998875
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.2e-10 Score=65.78 Aligned_cols=44 Identities=25% Similarity=0.612 Sum_probs=36.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.+...|.||++.+... ..+||||. ||..|+.. ...||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 4567899999987653 88999999 99999974 468999998764
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.02 E-value=4.3e-11 Score=70.74 Aligned_cols=43 Identities=42% Similarity=0.852 Sum_probs=36.3
Q ss_pred CccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+...|+||++.+... ..+||||. ||..|+..| ..||+||+++.
T Consensus 17 ~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 445799999997764 88899999 999999877 39999998764
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.3e-10 Score=80.31 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCCCCeE-cCCCCcccHhhHHHHhccC--ccccc--cCcceee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQ-VPCGHVFHAKCISTWISLS--NSCPV--CRSRCII 126 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~w~~~~--~~CP~--Cr~~~~~ 126 (128)
......||||++.|..| +. +.|||+||+.||..|+..+ .+||+ ||+.+..
T Consensus 178 ~~~el~CPIcl~~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45677899999999887 55 5999999999999999754 47999 9987653
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=3.7e-10 Score=68.63 Aligned_cols=49 Identities=20% Similarity=0.635 Sum_probs=37.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc--------Cccccc--cCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL--------SNSCPV--CRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~ 123 (128)
....+|+||++.+..+ ....+.+|||.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567899999998764 22233479999999999998852 237999 9987
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=2.4e-10 Score=84.44 Aligned_cols=44 Identities=32% Similarity=0.793 Sum_probs=38.2
Q ss_pred CCccccccccccccCCCCCCeEcCCCCc-ccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHV-FHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.++..|+||++.+..+ ..+||||. ||..|+..| ..||+||+++.
T Consensus 293 ~~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 3457899999998875 78899999 999999988 68999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.89 E-value=4.6e-10 Score=63.05 Aligned_cols=47 Identities=9% Similarity=0.153 Sum_probs=41.2
Q ss_pred ccccccccccccCCCCCCeEc-CCCCcccHhhHHHHhccCccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
...|+|+++.+..+ +.+ ++||+|.+.||.+|++.+.+||+.++++..
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999999987 777 899999999999999888899999988753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.71 E-value=6.4e-09 Score=63.17 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=37.8
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCccccccCccee
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSNSCPVCRSRCI 125 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 125 (128)
.|.+|--++..- .+++||+|+||.+|+..|.+ ..++||.|+.++.
T Consensus 3 fC~~C~~Pi~iy---gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY---GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE---EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE---eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 588888888663 48899999999999999984 5679999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.28 E-value=5.6e-07 Score=63.28 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=39.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc--cccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN--SCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~~~~ 125 (128)
+....|.||.+....+ .....|+|.||..|+.+|++.+. .||.|+..|.
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3467899999998874 23334999999999999997654 8999998874
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.14 E-value=0.00056 Score=40.87 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=39.1
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
......|..||-.... .+.-..|.+|..|+..++..+..||+|++++-
T Consensus 25 ~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred ccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 3566789999977654 44445799999999999999999999998763
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.38 E-value=0.0016 Score=39.23 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=25.8
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHH-Hh
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST-WI 111 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~-w~ 111 (128)
++..|.||.+.+..+ .+..-+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHhc
Confidence 356799999764331 1223489999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.04 E-value=0.0052 Score=34.48 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=33.1
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCc----cccccCcc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSN----SCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~----~CP~Cr~~ 123 (128)
....|.||.+. +..+.--.|...||..|+...+.... .||.|+..
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44569999753 44555667899999999988775432 79999753
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.36 E-value=0.024 Score=33.18 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
..+..|.||-.-- . +.......|+.+||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~-~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-A-ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-S-SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-c-cceeccccccccccHhhcccc
Confidence 3677899996332 2 222333458999999999986
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.91 E-value=0.0045 Score=34.28 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=34.0
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-----cCccccccCc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-----LSNSCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~ 122 (128)
.++...|+||...+...+..+.--.|..-||..|+.--.. ....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3566779999988754333444456888999999853221 3447999964
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.58 E-value=0.02 Score=31.42 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc----CccccccCcc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL----SNSCPVCRSR 123 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 123 (128)
......|.||... +..+.--.|...||..|+..-+.. .-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456779999863 334444468889999999875432 2269999753
No 79
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.34 E-value=0.012 Score=31.73 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=32.0
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
...+..|.||... +..+.--.|...||..|+.+-+... -.||.|++
T Consensus 6 ~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4566779999864 4445555788999999998654322 25998854
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.07 E-value=0.022 Score=31.26 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 123 (128)
.....|.||... +..+.--.|...||..|+..-+... -.||.|+..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456679999753 4444555688899999998644322 269999754
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.98 E-value=0.079 Score=43.86 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCCCCeEcCCC-CcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCG-HVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
-+...|||-++.+..| ++++-| +++=+..|.+|+..+.+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3677899999999997 889998 58999999999998889999888764
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.85 E-value=0.053 Score=28.40 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=29.0
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
.|.||...-.. +..+.--.|...||..|+.+=+... -.||.|++
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888765322 3344555788999999997544322 26999975
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.61 E-value=0.027 Score=37.64 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=32.0
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 123 (128)
.+..|.+|... +..+..-.|...||..|+.+-+... -.||.|+..
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45669999744 4455555688999999997765432 269999863
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.37 E-value=0.095 Score=30.96 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCcc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRSR 123 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 123 (128)
......|.+|... +..+..-.|...||..|+.+=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566689999864 4455555788899999997755432 269999753
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.09 E-value=0.042 Score=31.26 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc----cCccccccCcce
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS----LSNSCPVCRSRC 124 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~ 124 (128)
.+...|.||...... ...+.--.|...||..|+..-.. ..-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDG-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSS-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCC-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 445569999877532 23334446888999999975443 233699997654
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.90 E-value=0.031 Score=38.08 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 123 (128)
..+..|.+|... +..+..-.|...||..|+.+.+... -.||.|+..
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 345679999744 3333444688899999997765422 269999763
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.59 E-value=0.042 Score=30.56 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
..+..|.||... +..+.--.|...||..|+.+-+... -.||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456779999864 3445555788899999998544322 26999964
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.29 E-value=0.29 Score=31.48 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---------cC--ccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---------LS--NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---------~~--~~CP~Cr~ 122 (128)
..+..|.+|.+. +..+..-.|-..||..||.+-+. .. -.||.|+.
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456779999865 44445557889999999997663 11 26999974
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=90.17 E-value=0.037 Score=30.16 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=31.0
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~ 123 (128)
.+..|.||... +..+.--.|...||..|+.+-+... -.||.|+..
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45679999864 3445555788999999998644322 269999653
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=89.49 E-value=0.1 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCccccccccccc-cCCCCCCeEcCCCCcccHhhHHHHhccC--ccccccCc
Q 033086 73 GTTEGVCMVCMEDF-DPQEFPGKQVPCGHVFHAKCISTWISLS--NSCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~ 122 (128)
......|.||...- ..++..+.--.|...||..|+..-.... -.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35667899998763 1223334444688899999997533222 26998864
No 91
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.32 E-value=0.03 Score=34.19 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=32.1
Q ss_pred ccccccccccccCCCCCCeEc-CCCCcccHhhHHHH------h----ccCccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTW------I----SLSNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w------~----~~~~~CP~Cr~~~~~ 126 (128)
...|.||...+...+..+..- .|..-||..|+.-- + .....||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 346999999975533333332 57888999998411 1 133479999765443
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.30 E-value=0.1 Score=32.03 Aligned_cols=45 Identities=20% Similarity=0.416 Sum_probs=29.2
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
.|.||...-...+..+.--.|...||..|+.+-+... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777875422223344455689999999997655422 26999975
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.18 E-value=0.13 Score=30.85 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=30.1
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---cCccccccCc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---LSNSCPVCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~ 122 (128)
+...| ||...... +..+.--.|...||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44567 88776544 33444556888999999865332 2347999973
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.46 E-value=0.25 Score=28.26 Aligned_cols=49 Identities=20% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh-----ccCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-----SLSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~~ 123 (128)
.+...| ||..........+.--.|..-||..|+.--. .....||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344456 8988775333344455688899999984211 134589999864
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.22 E-value=0.14 Score=34.26 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=32.2
Q ss_pred cccccccccccCCCC---CCeEcCCCCcccHhhHHH------Hhc-----cCccccccCcc
Q 033086 77 GVCMVCMEDFDPQEF---PGKQVPCGHVFHAKCIST------WIS-----LSNSCPVCRSR 123 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~---~~~~~~C~H~f~~~Ci~~------w~~-----~~~~CP~Cr~~ 123 (128)
..|+||...+..++. .+..-.|..-||..|+.- -+. ....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 459999999877432 334456889999999732 111 14589999864
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.10 E-value=0.28 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCccccccccccccCCCCCCeEc-CCCCcccHhhHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV-PCGHVFHAKCIS 108 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~ 108 (128)
+....|++|..++......+.-- .|..-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45567999999976533334444 788899999983
No 97
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.95 E-value=0.13 Score=34.56 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=30.2
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc----CccccccCcc
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL----SNSCPVCRSR 123 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 123 (128)
..|.+|... +..+..-.|...||..|+.+=+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 459999854 445566678899999999764432 2269999753
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.89 E-value=0.19 Score=30.64 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=26.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS 112 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 112 (128)
..+..|.||...=.. ...+.--.|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 466789999876322 22245567899999999987654
No 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.68 E-value=1.1 Score=26.35 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=35.3
Q ss_pred CccccccccccccCC---CCCCeEcCCCCcccHhhHHHHh-ccCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQ---EFPGKQVPCGHVFHAKCISTWI-SLSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~~ 125 (128)
....|.||-+.+... +.-+..--|+--.|+.|..--. ..+..||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 446799999997331 1122334578788999987554 46668999998874
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=87.05 E-value=0.31 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred ccccccccccCCCCCCeEc-CCCCcccHhhHHHH----hccCccccccC
Q 033086 78 VCMVCMEDFDPQEFPGKQV-PCGHVFHAKCISTW----ISLSNSCPVCR 121 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w----~~~~~~CP~Cr 121 (128)
.|.+|..++..+...+.-- .|..-||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3778888775433233333 57778999997421 12455799885
No 101
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=86.82 E-value=0.066 Score=33.49 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=29.7
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccC
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCR 121 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 121 (128)
....|..|...|..-....-...||.+||..|........+.|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 44579999999865322334557999999999766554455677663
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=86.02 E-value=0.5 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
..+...|.+|...|..-....--..||.+||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 35566899999998753222234569999999997543
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.97 E-value=0.29 Score=32.14 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=31.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh-----ccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI-----SLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----~~~~~CP~Cr~ 122 (128)
++...| +|.......+..+..-.|...||..|+.--. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456678 9988765433344455688899999984211 23447999975
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.35 E-value=0.31 Score=26.53 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=29.0
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCcccccc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVC 120 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~C 120 (128)
.|-.|...|.... ...-..|++.||.+|=.-.-..-..||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4989998885421 12355799999999965443444579988
No 105
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.25 E-value=0.096 Score=31.12 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
.+...|.||...-.. +..+..-.|...||..|+.+=+... -.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345579999876432 3344455688899999997544322 25999964
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.76 E-value=0.55 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=26.4
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
+...|.+|...|..-....-...||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 445799999999753333345579999999997554
No 107
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.21 E-value=0.65 Score=34.47 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=32.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHh---cc--CccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI---SL--SNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~~--~~~CP~Cr~~~~~ 126 (128)
...||+-...+..| ++...|.|.-|.+- ..|+ .+ .-.||+|.+.+.+
T Consensus 249 SL~CPlS~~ri~~P---vRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP---SKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE---EEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc---CcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 45799988888776 57788999866553 2333 22 2379999887643
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=83.99 E-value=0.66 Score=27.25 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=26.9
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
+...|.+|...|..-........||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4567999999996533333455799999999986543
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.91 E-value=0.23 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCcccccccccccc-CCCCCCeEcCCCCcccHhhHHHHhccC--ccccccCc
Q 033086 74 TTEGVCMVCMEDFD-PQEFPGKQVPCGHVFHAKCISTWISLS--NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~ 122 (128)
+++..|.||...-. ..+..+..-.|.-.||..|+..-+... -.||.|+.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 45678999987531 112233344688899999997543222 26999864
No 110
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.88 E-value=0.87 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=27.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
.+...|.+|...|..-....--..||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456799999999763333345579999999997654
No 111
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.76 E-value=0.71 Score=26.55 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=26.5
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
.+...|.+|...|..-....--..||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455799999999753233345579999999997643
No 112
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.64 E-value=0.73 Score=34.07 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHh---ccC--ccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI---SLS--NSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~~~--~~CP~Cr~~~~~ 126 (128)
...||+-...+..| ++...|.|.-|.+- ..|+ .+. -.||+|.+.+.+
T Consensus 215 SL~CPlS~~ri~~P---~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP---CRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE---EEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC---CcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH
Confidence 45699988888776 47788999866552 2333 222 379999987643
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.93 E-value=2.1 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=23.5
Q ss_pred Cccccccccccc-----cCCCCCCeEcCCCCcccHhhHH
Q 033086 75 TEGVCMVCMEDF-----DPQEFPGKQVPCGHVFHAKCIS 108 (128)
Q Consensus 75 ~~~~C~IC~~~~-----~~~~~~~~~~~C~H~f~~~Ci~ 108 (128)
....|.+|+..- ..++..+.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345699998753 1223455566799999999995
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.67 E-value=1.3 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCccccccccccccCCCCCCeEcC--CC-CcccHhhHHHHhc--cCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVP--CG-HVFHAKCISTWIS--LSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~--~~~~CP~Cr~~ 123 (128)
.+...| ||..... +..+..-. |. ..||..|+.---. .+-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 445567 9987643 22333334 54 5799999861111 23379999764
No 115
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.66 E-value=1 Score=25.98 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=25.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST 109 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 109 (128)
.+...|.+|...|..-....--..||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344579999999965322333456999999999754
No 116
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.36 E-value=0.57 Score=25.63 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=32.7
Q ss_pred CCccccccccccccC-CCCCCeEcCCCCcccHhhHHHHhc-------cCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDP-QEFPGKQVPCGHVFHAKCISTWIS-------LSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-------~~~~CP~Cr~~ 123 (128)
.+...|.||...... .+..+.--.|...||..|+..-+. ..-.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999976432 233334446888999999876432 22269998643
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.32 E-value=0.53 Score=26.61 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHH---------hccCccccccCcc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW---------ISLSNSCPVCRSR 123 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w---------~~~~~~CP~Cr~~ 123 (128)
...| ||...... +..+.--.|..-||..|+.-- ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 88877653 333444468889999998421 1245689999754
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=81.17 E-value=1.4 Score=27.73 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc---------cC--ccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS---------LS--NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---------~~--~~CP~Cr~ 122 (128)
..+..|.||.+. ++.+.--.|-..||..||.+-+. .. =.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345569999854 33333446889999999997531 11 27999964
No 119
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.05 E-value=0.2 Score=28.15 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh----ccCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI----SLSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~----~~~~~CP~Cr~~ 123 (128)
.+...| ||......+...+.--.|..-||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 445568 7887654322344444688889999985321 234479999654
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=80.69 E-value=0.19 Score=28.25 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=26.8
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-----CccccccCcc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-----SNSCPVCRSR 123 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 123 (128)
.|.||...-.. +..+.--.|...||..|+.+=+.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677654222 222333357889999999854432 2269999753
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=80.69 E-value=1.1 Score=25.19 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=24.1
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHH
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST 109 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 109 (128)
..|.+|...|..-....--..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 469999999875322334456999999999754
No 122
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=79.89 E-value=0.36 Score=36.01 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-------cCccccccCccee
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-------LSNSCPVCRSRCI 125 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-------~~~~CP~Cr~~~~ 125 (128)
....|.+|...|..-........||++||..|...++. ..+.|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 35679999999865322334557999999999876541 2346888865544
No 123
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.71 E-value=0.51 Score=22.68 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=10.8
Q ss_pred CCccccccccccccC
Q 033086 74 TTEGVCMVCMEDFDP 88 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~ 88 (128)
.+.+.||+|+..+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 345788888887755
No 124
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=79.55 E-value=2.7 Score=24.05 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=15.8
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
....|..|-..+... .+..-+..||..|
T Consensus 24 ~~~~C~~C~~~I~~~----~~~a~~~~~H~~C 51 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA----VVKARDKYRHPEC 51 (89)
T ss_dssp SCCBCTTTCCBCCSC----CEESSSCEECTTT
T ss_pred cCCCcccCCCEeccc----EEEECCceECccC
Confidence 345677777766541 2333556666666
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.54 E-value=0.24 Score=28.41 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=28.1
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-----CccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-----SNSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~ 122 (128)
.|.||...-.. +..+.--.|...||..|+.+=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67888764322 333344468889999999854432 226999864
No 126
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.40 E-value=1.5 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=17.6
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhH
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 107 (128)
....|..|-..+... .+..-+..||..|.
T Consensus 14 ~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV----FVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCSS----CEECSSCEECTTTT
T ss_pred CCCccccCCCCccCc----EEEECcceeCcCcC
Confidence 345688887776542 33345667777664
No 127
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.27 E-value=0.2 Score=28.76 Aligned_cols=44 Identities=30% Similarity=0.598 Sum_probs=25.7
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc----C-ccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL----S-NSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~-~~CP~Cr~ 122 (128)
.|.||...-.. +..+.--.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35566544322 222233357889999999865532 1 26999974
No 128
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.80 E-value=1.1 Score=25.83 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=25.8
Q ss_pred CCccccccccccccCCCCCCeEcCC----CCcccHhhHHHHhcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPC----GHVFHAKCISTWISL 113 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C----~H~f~~~Ci~~w~~~ 113 (128)
.....|.+|.+.++.. . . ..| .|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdt-H--F-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-H--F-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST-T--S-EECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC-c--e-eeCCCccCCeeeccccHHHHHh
Confidence 4456799999998762 1 1 223 799999999887753
No 129
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=78.46 E-value=0.19 Score=27.27 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-cCc---cccccCc
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-LSN---SCPVCRS 122 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~---~CP~Cr~ 122 (128)
..+...|.||...=-..+.-.....|.-.||..|-.+|-. .++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4677889999876433232234445777788888766642 333 4777765
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.38 E-value=0.98 Score=30.79 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
...|.+|...|..-....-...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999753333445679999999997643
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=78.26 E-value=0.36 Score=26.91 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=29.9
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHh---ccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI---SLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~~~~~CP~Cr~ 122 (128)
.+...| ||...... +..+.--.|..-||..|+.--. .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~-~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTT-CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCC-CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455567 99876543 3344444688899999985322 13347999964
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=77.25 E-value=0.62 Score=32.23 Aligned_cols=44 Identities=30% Similarity=0.596 Sum_probs=26.2
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHHHhcc-----CccccccCc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISL-----SNSCPVCRS 122 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~ 122 (128)
.|.+|...-.. +..+..-.|...||..|+.+=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888764322 344455578899999999854432 226999975
No 133
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.22 E-value=0.64 Score=26.49 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCccccccccccccCCCCCCeEc--CCCCcccHhhHHHHh---------ccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCISTWI---------SLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~ 122 (128)
.+...| ||-..... +..+.-- .|..-||..|+.--- ..+..||.|+.
T Consensus 14 ~~~~~C-iC~~~~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 14 EIKVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCEEe-ECCCcCCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 345567 78877433 2233333 688899999985321 13457999964
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=77.09 E-value=0.88 Score=27.32 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=10.7
Q ss_pred cccHhhHHHHhc
Q 033086 101 VFHAKCISTWIS 112 (128)
Q Consensus 101 ~f~~~Ci~~w~~ 112 (128)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 135
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.92 E-value=0.89 Score=27.24 Aligned_cols=12 Identities=25% Similarity=0.947 Sum_probs=10.8
Q ss_pred cccHhhHHHHhc
Q 033086 101 VFHAKCISTWIS 112 (128)
Q Consensus 101 ~f~~~Ci~~w~~ 112 (128)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.91 E-value=1.2 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=25.9
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
...|.+|...|..-....-...||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999999753233345679999999997654
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=75.72 E-value=0.68 Score=28.13 Aligned_cols=26 Identities=35% Similarity=0.818 Sum_probs=17.4
Q ss_pred eEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 94 KQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
....||+.|. .-+.....||.|++..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 5667999991 1223445899998754
No 138
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.47 E-value=1.1 Score=28.30 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCcccccccccccc-CCCCCCeEcCCCCcccHhhHHHHhccC----ccccccCc
Q 033086 74 TTEGVCMVCMEDFD-PQEFPGKQVPCGHVFHAKCISTWISLS----NSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~ 122 (128)
.....|.+|...|. ..+.-.....|.|.+|..|-..-.... -.|-+|++
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 46778999999993 323334566799999999964321111 15777765
No 139
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.34 E-value=1.5 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=26.5
Q ss_pred CCccccccccccccCCCCCCeEcC--CC-CcccHhhHHHHhc----cCccccccCcc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVP--CG-HVFHAKCISTWIS----LSNSCPVCRSR 123 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~----~~~~CP~Cr~~ 123 (128)
.+...| ||..... +..+.--. |. ..||..|+. +. .+-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 455667 8987532 21222223 55 589999996 32 22369999754
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.30 E-value=2.1 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=15.2
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhH
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 107 (128)
....|..|-..+... .+..-+..||..|.
T Consensus 24 ~~~~C~~C~~~I~~~----~v~a~~~~~H~~CF 52 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP----FLVALGKSWHPEEF 52 (90)
T ss_dssp CCCBBSSSCCBCCSC----EEEETTEEECTTTC
T ss_pred CCCCCccCCCEecce----EEEECCccccccCC
Confidence 344577776666431 33334556666553
No 141
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.50 E-value=2.2 Score=26.04 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=22.4
Q ss_pred cccccccccc------CCCCCCeEcCCCCcccHhhHHHH
Q 033086 78 VCMVCMEDFD------PQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 78 ~C~IC~~~~~------~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
.|.||+..-. .++..+.-..|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5888887541 12344555679999999998643
No 142
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.94 E-value=0.34 Score=28.43 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=31.7
Q ss_pred CccccccccccccCC-CCCCeEcCCCCcccHhhHHHHhc--------cCccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQ-EFPGKQVPCGHVFHAKCISTWIS--------LSNSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~--------~~~~CP~Cr~~ 123 (128)
....|.||...-..+ +..+.--.|...||..|+.+-+. ..-.|+.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 455799998764321 23334446889999999986543 12269998653
No 143
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=72.89 E-value=1.5 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=20.5
Q ss_pred CCccccccccccccCCCCCCeEc--CCCCcccHhhHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCIS 108 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~ 108 (128)
..+..|.+|.+. +..+.-- .|-..||..|+.
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc
Confidence 566779999832 3222222 477899999987
No 144
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.28 E-value=3.5 Score=23.23 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=18.4
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 107 (128)
.....|..|-..+.... .+..-+..||..|.
T Consensus 13 ~~~~~C~~C~~~I~~~e---~v~a~~~~wH~~CF 43 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLE---RLCVNGHFFHRSCF 43 (82)
T ss_dssp CSSCBCSSSCCBCCTTT---BCCBTTBCCBTTTC
T ss_pred CCCCCCcccCCCcccce---EEEECCCeeCCCcC
Confidence 34567888888775422 12234566777763
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.13 E-value=3.3 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCccccccccccccC-CCCCCeEcCCCCcccHhhHHHHhccCc--cccccCc
Q 033086 74 TTEGVCMVCMEDFDP-QEFPGKQVPCGHVFHAKCISTWISLSN--SCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~CP~Cr~ 122 (128)
..+..|.+|...|.. .+.-.....|.|.+|..|- .|+.... .|-+|++
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467889999998743 1234456689999999997 2443322 5777754
No 146
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.84 E-value=4.8 Score=30.04 Aligned_cols=33 Identities=15% Similarity=0.449 Sum_probs=21.6
Q ss_pred ccccccccccccCCCCCCeEc--CCCCcccHhhHHHHhc
Q 033086 76 EGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCISTWIS 112 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~ 112 (128)
+..|-+|-+. +..+..- .|...||..||..++.
T Consensus 93 ~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 93 QSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp BCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred cccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 3445555532 3333333 7889999999999884
No 147
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.13 E-value=1 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=24.8
Q ss_pred cccccccccccCCCC--CCeEcC--CCCcccHhhHHHHhccC
Q 033086 77 GVCMVCMEDFDPQEF--PGKQVP--CGHVFHAKCISTWISLS 114 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~--~~~~~~--C~H~f~~~Ci~~w~~~~ 114 (128)
..||-|...++..+. .+.-.. |++.||..|...|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 458888777754321 112223 88999999999987543
No 148
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=65.95 E-value=4 Score=26.61 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=22.3
Q ss_pred CccccccccccccCCCCCCeEc--CCCCcccHhhHHHHhcc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCISTWISL 113 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~~ 113 (128)
.+..|-||-+. +.++.-- .|...||..||..++..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 34557777643 2222222 57789999999998864
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.60 E-value=4.5 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=13.6
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
+.|..|...+... .....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~---~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQ---RFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTS---CCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcC---ceEeeCCeEECHHHHHHH
Confidence 3455555554321 122233445555555443
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=64.54 E-value=3.2 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=12.6
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
..|+.|-..+... .+..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~----~~~a~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIEGR----VVNAMGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECCSC----EECCTTSBEETTT
T ss_pred CCCcccCCEecce----EEEECccccccCc
Confidence 3466666555421 2333445555555
No 151
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.27 E-value=2.7 Score=22.75 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=5.6
Q ss_pred CCcccHhhHHHH
Q 033086 99 GHVFHAKCISTW 110 (128)
Q Consensus 99 ~H~f~~~Ci~~w 110 (128)
+..||..|..+.
T Consensus 51 g~~yC~~c~~~~ 62 (70)
T 2d8x_A 51 GRHLCRPCHNRE 62 (70)
T ss_dssp TEEECHHHHHHH
T ss_pred CeEECHHHhhhh
Confidence 444555554443
No 152
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.22 E-value=5.1 Score=22.33 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 033086 77 GVCMVCMEDFD 87 (128)
Q Consensus 77 ~~C~IC~~~~~ 87 (128)
..|.-|-..+.
T Consensus 16 ~~C~~C~~~I~ 26 (79)
T 2cor_A 16 YICQKCHAIID 26 (79)
T ss_dssp CBCTTTCCBCC
T ss_pred CCCccCCCEec
Confidence 44666665554
No 153
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=61.59 E-value=0.61 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.775 Sum_probs=13.3
Q ss_pred CCCCcccHhhHHHHh
Q 033086 97 PCGHVFHAKCISTWI 111 (128)
Q Consensus 97 ~C~H~f~~~Ci~~w~ 111 (128)
.|++.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999998883
No 154
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.38 E-value=5.5 Score=22.00 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=24.8
Q ss_pred CCCccccccccccccCCCCCCeEcCC-CCcccHhhHHHH
Q 033086 73 GTTEGVCMVCMEDFDPQEFPGKQVPC-GHVFHAKCISTW 110 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Ci~~w 110 (128)
.++..-|.||.++- .++.+.| +-.||..|....
T Consensus 5 ~ee~pWC~ICneDA-----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDA-----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCC-----CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCC-----eEEecCCCCceehHHHHHHH
Confidence 35667799999872 3477788 778999997765
No 155
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.18 E-value=5.7 Score=21.50 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.9
Q ss_pred cccccccccc
Q 033086 78 VCMVCMEDFD 87 (128)
Q Consensus 78 ~C~IC~~~~~ 87 (128)
.|.-|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3555555443
No 156
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.03 E-value=4 Score=21.94 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=13.5
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHH
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTW 110 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (128)
+.|..|...+... .....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~---~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQ---RFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTS---CEEECSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCC---ccEeECCEEECHHHhHHH
Confidence 3455555444321 122233445555555444
No 157
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=59.28 E-value=0.83 Score=25.26 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCccccccccccccCCCCCCeEc--CCCCcccHhhHHHHh---c-----cCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV--PCGHVFHAKCISTWI---S-----LSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~---~-----~~~~CP~Cr~ 122 (128)
++...| ||......+ ..+.-- .|..-||..|+.--- . .+..||.||.
T Consensus 8 e~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344556 786654432 222221 267789999973211 0 1357999974
No 158
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=58.39 E-value=11 Score=22.96 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=26.5
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
+.|..|-..+...+ ......=|..||..|..+.+.....|..|.+++
T Consensus 30 F~C~~C~~~L~~~~-~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLGEVG-RRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCSSTT-CCEEEETTEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred cccCcCCCccccCC-CeEEEECCEEeecCchhhhCCCccChhhcCCcc
Confidence 55677766664211 113334456677777766654444677776655
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=57.39 E-value=2.8 Score=23.49 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=28.4
Q ss_pred cccccccccCCCCCCeEcCCCCcccHhhHHHHhc-----cCccccccCcc
Q 033086 79 CMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-----LSNSCPVCRSR 123 (128)
Q Consensus 79 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 123 (128)
--||...+...+..+.--.|.--||..|+.---. ....||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3488877643333444456888999999953221 23579999753
No 160
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.39 E-value=4.5 Score=22.24 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=14.4
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
...|..|-..+.... .+..-+..||..|
T Consensus 9 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~C 36 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE---KVSSLGKDWHKFC 36 (76)
T ss_dssp CCBCTTTCCBCCTTT---EEEETTEEEETTT
T ss_pred CCCCcCCCCEeECCe---EEEECCeEeeCCC
Confidence 345777766665321 2223455566555
No 161
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.30 E-value=5.8 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=16.8
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
+.|..|-..+..+. .....=+..||..|.....
T Consensus 32 F~C~~C~~~L~~~~--~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 32 ALCVRCGQMFAEGE--EMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp SCCSSSCCCCCSSC--CCEEETTEEECTTHHHHTS
T ss_pred CEeCCCCCCCCCCC--eeEeeCCEEEChHHChHhh
Confidence 45666666655211 1222344566666765544
No 162
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=57.15 E-value=7.3 Score=23.89 Aligned_cols=41 Identities=15% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
.....|.-|-..+... ..+..-+..||..|. +|-.|++++.
T Consensus 59 ~~~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADR---FLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SSCSBBSSSSSBCCSS---SEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred ccCCcCcCCCCCcCCc---EEEEeCCcEEccccc--------CcCcCCCccc
Confidence 3456799999887652 123345777887773 5777776653
No 163
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.62 E-value=6 Score=22.15 Aligned_cols=39 Identities=18% Similarity=0.481 Sum_probs=22.6
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
....|.-|-..+... +. +..-+..||..|. +|-.|++++
T Consensus 14 ~~~~C~~C~~~I~~~-~~--v~a~~~~wH~~CF--------~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QS--LLALDKQWHVSCF--------KCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSS-CC--EEETTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCCcCcCCeeCCC-eE--EEECCcccccccC--------CcCcCCCCc
Confidence 455688888777542 22 2234566777663 566666544
No 164
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=55.59 E-value=3.5 Score=18.76 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=6.5
Q ss_pred CccccccCcc
Q 033086 114 SNSCPVCRSR 123 (128)
Q Consensus 114 ~~~CP~Cr~~ 123 (128)
+..||+|+..
T Consensus 3 k~~CpvCk~q 12 (28)
T 2jvx_A 3 DFCCPKCQYQ 12 (28)
T ss_dssp CEECTTSSCE
T ss_pred cccCcccccc
Confidence 3468888754
No 165
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.47 E-value=6.5 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.3
Q ss_pred CCcccHhhHH
Q 033086 99 GHVFHAKCIS 108 (128)
Q Consensus 99 ~H~f~~~Ci~ 108 (128)
+..||..|..
T Consensus 53 ~~~yC~~cy~ 62 (72)
T 1wyh_A 53 GAHYCVPCYE 62 (72)
T ss_dssp TEEEEHHHHH
T ss_pred CeEECHHHHH
Confidence 3344444443
No 166
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=55.21 E-value=2.6 Score=32.36 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=30.6
Q ss_pred CccccccccccccCCCCCCeEcCCCCcccHhhHHHHhc-----cCccccccCcc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWIS-----LSNSCPVCRSR 123 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 123 (128)
+...| ||.......+..+..-.|.--||..|+.---. ....||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 33445 99887654344445556888999999842211 23479999753
No 167
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.90 E-value=7.8 Score=21.14 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=14.5
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
...|..|-..+...+.. +..-+..||..|
T Consensus 11 ~~~C~~C~~~I~~~~~~--~~a~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI--VNSNGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTC--EEETTEEECTTT
T ss_pred CCCchhcCCccCCCceE--EEeCccEecccc
Confidence 34577777776532211 122345566555
No 168
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.76 E-value=5.9 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=6.3
Q ss_pred CCcccHhhHHHHh
Q 033086 99 GHVFHAKCISTWI 111 (128)
Q Consensus 99 ~H~f~~~Ci~~w~ 111 (128)
+..+|..|..+.+
T Consensus 63 ~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 63 ATLYCGKCHNEVV 75 (81)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CEEECHHHHHHHh
Confidence 4445555554443
No 169
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=52.95 E-value=1.4 Score=31.79 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCccccccccccccCCCCCCeEc----CCC--CcccHhhHHHHhccCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQV----PCG--HVFHAKCISTWISLSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~----~C~--H~f~~~Ci~~w~~~~~~CP~Cr~ 122 (128)
.....||+|-...... .+. .=| +.+|..|-..|-.....||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s----~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG----MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEE----EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCcee----EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 6778999998776442 111 122 35677888899777778999965
No 170
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.92 E-value=5.3 Score=21.97 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=13.7
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
..|..|-..+...+....+..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc
Confidence 346666666553000112333455566665
No 171
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.76 E-value=5.7 Score=23.72 Aligned_cols=42 Identities=26% Similarity=0.523 Sum_probs=26.3
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcceee
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCII 126 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~~ 126 (128)
+..||+|..++...+ ++.+|..|-.. +.....||-|.+++.+
T Consensus 32 ~~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHHH
Confidence 367999998875421 22335556322 3444579999988764
No 172
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.37 E-value=9.4 Score=23.14 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=31.8
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+.|..|-..+...+ ......=+..||..|..+.+..+..|..|.+++.
T Consensus 33 F~C~~C~~~L~~~~-~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIG-TSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSE-ECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccC-CeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 46778877764200 1133445677899998887766668999987654
No 173
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.94 E-value=7.2 Score=21.52 Aligned_cols=9 Identities=22% Similarity=0.744 Sum_probs=4.1
Q ss_pred ccccccccc
Q 033086 78 VCMVCMEDF 86 (128)
Q Consensus 78 ~C~IC~~~~ 86 (128)
.|..|-..+
T Consensus 17 ~C~~C~~~I 25 (80)
T 2cuq_A 17 RCARCSKTL 25 (80)
T ss_dssp CCTTTCCCC
T ss_pred cCCCCCCEe
Confidence 344444444
No 174
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.00 E-value=5.4 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=14.6
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhH
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 107 (128)
.|..|-..+... .+..-+..||..|.
T Consensus 17 ~C~~C~~~I~~~----~v~a~~~~wH~~CF 42 (81)
T 1v6g_A 17 RCFSCDQFIEGE----VVSALGKTYHPDCF 42 (81)
T ss_dssp BCTTTCCBCCSC----CEEETTEEECTTTS
T ss_pred cCccccCEeccc----eEEECCceeCccCC
Confidence 577777766531 22234556666663
No 175
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.88 E-value=2.6 Score=22.65 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=24.7
Q ss_pred CccccccccccccCCCCCCeEcC--CC-CcccHhhHHHHhc----cCccccccCc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVP--CG-HVFHAKCISTWIS----LSNSCPVCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~----~~~~CP~Cr~ 122 (128)
+...| ||..... +..+.--. |. ..||..|+. +. .+-.||.|++
T Consensus 9 e~~~C-~C~~~~~--g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC--CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 8987632 21112223 44 579999997 32 2236999964
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=48.64 E-value=7.4 Score=23.65 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=19.0
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHh
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWI 111 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~ 111 (128)
-+.|..|-..+..+. .....=+..||..|..+++
T Consensus 36 CF~C~~C~~~L~~g~--~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGD--RYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTC--EEEECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCC--cEEeeCCEEEcHHHhHHHh
Confidence 356677766663311 1333446667777776664
No 177
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=48.30 E-value=2.7 Score=22.53 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCccccccccccccCCCCCCeEcC--CC-CcccHhhHHHHhc--cCccccccCc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGKQVP--CG-HVFHAKCISTWIS--LSNSCPVCRS 122 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~--~~~~CP~Cr~ 122 (128)
.+...| ||..... +..+.--. |. ..||..|+.---. .+-.||.|++
T Consensus 7 ~e~~yC-~C~~~~~--g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY--GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC--CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 344556 8987642 21222223 55 5899999971111 2236999964
No 178
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.27 E-value=1.1 Score=25.83 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=7.7
Q ss_pred cccccccccccC
Q 033086 77 GVCMVCMEDFDP 88 (128)
Q Consensus 77 ~~C~IC~~~~~~ 88 (128)
..||.|..++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 457777766654
No 179
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.80 E-value=6.3 Score=21.91 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=3.8
Q ss_pred ccccccccc
Q 033086 78 VCMVCMEDF 86 (128)
Q Consensus 78 ~C~IC~~~~ 86 (128)
.|..|...+
T Consensus 43 ~C~~C~~~L 51 (81)
T 2dlo_A 43 TCVVCHRGL 51 (81)
T ss_dssp BCSSSCCBC
T ss_pred CcccCCCcc
Confidence 344444443
No 180
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.55 E-value=10 Score=20.99 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=13.4
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
..|..|-..+...+ . .+..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~-~-~~~a~~~~~H~~C 43 (82)
T 1x63_A 16 PKCKGCFKAIVAGD-Q-NVEYKGTVWHKDC 43 (82)
T ss_dssp CBCSSSCCBCCSSS-C-EEECSSCEEETTT
T ss_pred CcCccCCcccccCc-e-EEEECcccccccc
Confidence 35666666655321 1 2223355566555
No 181
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=46.29 E-value=2.2 Score=22.11 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=24.3
Q ss_pred cccccccCCCCCCeEcCCCCcccHhhHHHHh---ccCccccccCc
Q 033086 81 VCMEDFDPQEFPGKQVPCGHVFHAKCISTWI---SLSNSCPVCRS 122 (128)
Q Consensus 81 IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~~~~~CP~Cr~ 122 (128)
||...... +..+.--.|..-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~-~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTT-CCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCC-CCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 56554432 2333444578889999985322 23447999964
No 182
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.91 E-value=6.9 Score=21.59 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=4.8
Q ss_pred cccccccccc
Q 033086 78 VCMVCMEDFD 87 (128)
Q Consensus 78 ~C~IC~~~~~ 87 (128)
.|..|-..+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 1x3h_A 17 KCGGCNRPVL 26 (80)
T ss_dssp BCTTTCCBCC
T ss_pred ccccCCCeec
Confidence 3555554443
No 183
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=44.60 E-value=1.2 Score=19.19 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=8.4
Q ss_pred cccHhhHHHHhc
Q 033086 101 VFHAKCISTWIS 112 (128)
Q Consensus 101 ~f~~~Ci~~w~~ 112 (128)
.||..|-++|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 477778777763
No 184
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.97 E-value=6.4 Score=21.56 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=27.3
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccH-hhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHA-KCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~-~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
-+.|..|...+... .....=+..||. .|..+. ....|..|....
T Consensus 27 CF~C~~C~~~L~~~---~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 27 CLKCEKCGKTLTSG---GHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TCBCTTTCCBCCTT---TEEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCccccCccCCCC---ceECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 46788888777652 133445667888 587665 344677776543
No 185
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.83 E-value=1.5 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.602 Sum_probs=19.7
Q ss_pred cccccccccC-CCCCCeEc-CCCCcccHhhHHHH
Q 033086 79 CMVCMEDFDP-QEFPGKQV-PCGHVFHAKCISTW 110 (128)
Q Consensus 79 C~IC~~~~~~-~~~~~~~~-~C~H~f~~~Ci~~w 110 (128)
||-|-..+.. ++...+.= .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 7766554422 12222333 49999999998888
No 186
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.53 E-value=3.5 Score=22.31 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=25.2
Q ss_pred CccccccccccccCCCCCCeEcC--CC-CcccHhhHHHHhc--cCccccccCc
Q 033086 75 TEGVCMVCMEDFDPQEFPGKQVP--CG-HVFHAKCISTWIS--LSNSCPVCRS 122 (128)
Q Consensus 75 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~--~~~~CP~Cr~ 122 (128)
+...| ||..... +..+.--. |. ..||..|+.---. .+-.||.|++
T Consensus 10 e~~yC-~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 44556 8987632 21222223 44 7899999862111 2336999964
No 187
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.45 E-value=14 Score=20.96 Aligned_cols=12 Identities=8% Similarity=0.362 Sum_probs=5.9
Q ss_pred CCcccHhhHHHH
Q 033086 99 GHVFHAKCISTW 110 (128)
Q Consensus 99 ~H~f~~~Ci~~w 110 (128)
+..||..|..+.
T Consensus 62 g~~yC~~~y~~~ 73 (91)
T 2d8y_A 62 GRIYCKPHFNQL 73 (91)
T ss_dssp SCCCCHHHHHHH
T ss_pred CEEECHHHHHHH
Confidence 444555555443
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=42.89 E-value=11 Score=24.63 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=25.5
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
+.|..|...+...+ ......=+..||..|..+.+..+..|..|.+++
T Consensus 33 F~C~~C~~~L~~~g-~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 33 LKCSSCQAQLGDIG-TSSYTKSGMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp CBCTTTCCBHHHHC-SEEEEETTEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred cccCCCCcccccCC-ceEEEeCCccccccccccccccCCccccCCCcc
Confidence 45666766654300 012333456677777666554433677776655
No 189
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.79 E-value=9.1 Score=20.54 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=4.7
Q ss_pred cccccccccc
Q 033086 78 VCMVCMEDFD 87 (128)
Q Consensus 78 ~C~IC~~~~~ 87 (128)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4k_A 7 GCQECKKTIM 16 (72)
T ss_dssp CBSSSCCCCC
T ss_pred CCccCCCccc
Confidence 3555554443
No 190
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=42.48 E-value=11 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=15.7
Q ss_pred CeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 93 GKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 93 ~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
.....|||.|-.. .....||.|..++
T Consensus 133 y~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 133 YVCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EEESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred EECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 3455677776432 2234799998764
No 191
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=42.46 E-value=6.4 Score=21.88 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=3.6
Q ss_pred cccccccc
Q 033086 79 CMVCMEDF 86 (128)
Q Consensus 79 C~IC~~~~ 86 (128)
|..|-..+
T Consensus 10 C~~C~~~I 17 (81)
T 1a7i_A 10 CGACGRTV 17 (81)
T ss_dssp CSSSCCBC
T ss_pred CcCcCccc
Confidence 44444444
No 192
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.42 E-value=11 Score=17.12 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=17.8
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
..|+.|-......+ .+..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~E---k~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTE---KVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGG---CCCSSSSCCCGGG
T ss_pred CcCCccCCEEecce---eEEECCeEecccC
Confidence 35888988775421 3334577888887
No 193
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.37 E-value=5.5 Score=22.01 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=5.0
Q ss_pred ccccccCcce
Q 033086 115 NSCPVCRSRC 124 (128)
Q Consensus 115 ~~CP~Cr~~~ 124 (128)
-.||.|+.++
T Consensus 11 L~CP~ck~~L 20 (67)
T 2jny_A 11 LACPKDKGPL 20 (67)
T ss_dssp CBCTTTCCBC
T ss_pred hCCCCCCCcC
Confidence 3455555544
No 194
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.17 E-value=6.9 Score=23.39 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.1
Q ss_pred CccccccCccee
Q 033086 114 SNSCPVCRSRCI 125 (128)
Q Consensus 114 ~~~CP~Cr~~~~ 125 (128)
...||+|.++++
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446888877654
No 195
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.33 E-value=24 Score=19.92 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=24.8
Q ss_pred CCCccccccccccccC-CCCCCeEcCCCCcccHhhH
Q 033086 73 GTTEGVCMVCMEDFDP-QEFPGKQVPCGHVFHAKCI 107 (128)
Q Consensus 73 ~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci 107 (128)
.+.+..|..|.+.|.. .+.-..-..|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4667789999999843 1233456678898888883
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.44 E-value=11 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=22.9
Q ss_pred cccccccccccCCC-CCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 77 GVCMVCMEDFDPQE-FPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 77 ~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
..|+.|-..+...+ ....+..-+..||..|. +|-.|++++
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBC
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCC
Confidence 46888887776311 11233334667777763 566676554
No 197
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=37.36 E-value=11 Score=20.96 Aligned_cols=12 Identities=25% Similarity=0.910 Sum_probs=8.2
Q ss_pred CccccccCccee
Q 033086 114 SNSCPVCRSRCI 125 (128)
Q Consensus 114 ~~~CP~Cr~~~~ 125 (128)
...||+|.+++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 456888877764
No 198
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=36.20 E-value=4.6 Score=21.46 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=6.5
Q ss_pred ccccccCccee
Q 033086 115 NSCPVCRSRCI 125 (128)
Q Consensus 115 ~~CP~Cr~~~~ 125 (128)
-.||.|+.++.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 35666666554
No 199
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.19 E-value=16 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=13.6
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhh
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKC 106 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 106 (128)
..|..|-..+...+. .+..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~--~~~a~~~~~H~~C 43 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR--ELFYEDRHFHEGC 43 (82)
T ss_dssp CBCTTTCCBCCSSCC--BCCCSSCCCBTTT
T ss_pred CcCccCCCccccCcE--EEEeCCccccccC
Confidence 357777776652111 1112355566655
No 200
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=33.75 E-value=6.2 Score=29.99 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=29.3
Q ss_pred ccccccccccCCCCCCeEcCCCCcccHhhHHH---Hh--ccCccccccCcc
Q 033086 78 VCMVCMEDFDPQEFPGKQVPCGHVFHAKCIST---WI--SLSNSCPVCRSR 123 (128)
Q Consensus 78 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~---w~--~~~~~CP~Cr~~ 123 (128)
...||.......+..+..-.|.--||..|+.- -. .....||.|+..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 45588877653344444556888999999841 11 133479999753
No 201
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.51 E-value=39 Score=20.19 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=25.4
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
..|..|...+... .....=|..+|..|..+. ....|..|.+++.
T Consensus 31 F~C~~C~~~L~~~---~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAGE---IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTTS---EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCcCCCCCCCCcC---EEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 5677776666431 233345666777776554 3446777776554
No 202
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.40 E-value=26 Score=20.80 Aligned_cols=38 Identities=8% Similarity=-0.082 Sum_probs=21.6
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccC
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLS 114 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~ 114 (128)
-+.|..|-..+...+. .....=+..||..|..+.+..+
T Consensus 30 CF~C~~C~~~L~~~g~-~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGR-RLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TCCCSSSCSCCCCSSS-CCCCBTTBCCCHHHHHHHHTSC
T ss_pred cCcccccCCchhcCCC-eeEEECCeeechHHHHHHhCcc
Confidence 3567778777653110 1223346678888877765543
No 203
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.18 E-value=16 Score=19.30 Aligned_cols=39 Identities=26% Similarity=0.683 Sum_probs=21.4
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
...|..|-..+...+ . .+..-+..||..|. .|-.|.+++
T Consensus 11 ~~~C~~C~~~i~~~e-~-~~~~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 11 SATCERCKGGFAPAE-K-IVNSNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TCBCTTTCCBCCTTC-E-EEEETTEEEETTTS--------SCTTTCCCC
T ss_pred CccchhcCccccCCc-e-EEEeCcCeeCcCCC--------cccCCCCCC
Confidence 346888887776421 1 12234556776664 455555544
No 204
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.45 E-value=24 Score=20.22 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCccee
Q 033086 77 GVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRCI 125 (128)
Q Consensus 77 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 125 (128)
+.|..|...+... .....=+..||..|..+. ....|..|.+++.
T Consensus 34 F~C~~C~~~L~~~---~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANE---TFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSS---CCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred CcccccCCCCCcC---eeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 5677787776432 123345667888876432 4457999987764
No 205
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.03 E-value=17 Score=19.14 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=5.5
Q ss_pred cccccccccc
Q 033086 78 VCMVCMEDFD 87 (128)
Q Consensus 78 ~C~IC~~~~~ 87 (128)
.|.-|-..+.
T Consensus 4 ~C~~C~~~I~ 13 (65)
T 2iyb_E 4 VCQGCHNAID 13 (65)
T ss_dssp ECTTTSSEEC
T ss_pred CCcCCCCeec
Confidence 3555655554
No 206
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=27.41 E-value=21 Score=19.71 Aligned_cols=12 Identities=25% Similarity=1.046 Sum_probs=8.4
Q ss_pred cccccCcceeeC
Q 033086 116 SCPVCRSRCIIS 127 (128)
Q Consensus 116 ~CP~Cr~~~~~~ 127 (128)
.||.|...|.+.
T Consensus 42 ~CpYCg~~f~l~ 53 (67)
T 2jrr_A 42 ECPYCDCKYVLK 53 (67)
T ss_dssp EETTTTEEEEET
T ss_pred ECCCCCCEEEEC
Confidence 588887777654
No 207
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.91 E-value=26 Score=21.20 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=14.7
Q ss_pred eEcCCCCcccHhhHHHHhccCc-cccccCcc
Q 033086 94 KQVPCGHVFHAKCISTWISLSN-SCPVCRSR 123 (128)
Q Consensus 94 ~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~ 123 (128)
....|||.|-.. .... .||.|..+
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCC
Confidence 344577766542 2345 79999765
No 208
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=25.36 E-value=3.2 Score=20.52 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=12.5
Q ss_pred HhhHHHHhccCccccc
Q 033086 104 AKCISTWISLSNSCPV 119 (128)
Q Consensus 104 ~~Ci~~w~~~~~~CP~ 119 (128)
..||..|.+++.+|-.
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 18 YNCVYAWYNQQSSCER 33 (43)
T ss_dssp CEEEECGGGSSEEEEC
T ss_pred HHHHHHHHccCCchhh
Confidence 3589999998888753
No 209
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.33 E-value=33 Score=27.87 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=34.7
Q ss_pred CCccccccccccccCCCCCCe------EcCCCCcc--------------------cHhhHHHHhcc--------Cccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGK------QVPCGHVF--------------------HAKCISTWISL--------SNSCPV 119 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~------~~~C~H~f--------------------~~~Ci~~w~~~--------~~~CP~ 119 (128)
-+...|+-|+.++..|..... .+.||..| |..|-.+.-.. -..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 455689999999877654332 34577666 88998877531 126999
Q ss_pred cCccee
Q 033086 120 CRSRCI 125 (128)
Q Consensus 120 Cr~~~~ 125 (128)
|-=.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 964443
No 210
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=24.83 E-value=27 Score=20.26 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.7
Q ss_pred ccccccCcceeeCC
Q 033086 115 NSCPVCRSRCIISG 128 (128)
Q Consensus 115 ~~CP~Cr~~~~~~g 128 (128)
..||.|...|.+.+
T Consensus 49 ~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 49 KICPYCSTLYRYDP 62 (87)
T ss_dssp ECCTTTCCEEECCT
T ss_pred EECCCCCCEeEcCC
Confidence 36888887776543
No 211
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.37 E-value=31 Score=27.51 Aligned_cols=51 Identities=18% Similarity=0.462 Sum_probs=32.5
Q ss_pred CCccccccccccccCCCCCCe------EcCCCCcc--------------------cHhhHHHHhcc--------Cccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGK------QVPCGHVF--------------------HAKCISTWISL--------SNSCPV 119 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~------~~~C~H~f--------------------~~~Ci~~w~~~--------~~~CP~ 119 (128)
-+...|+-|+.++..|..... .+.||..| |..|..+.-.. -..||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 355679999998876543332 34466655 88888876531 136999
Q ss_pred cCcce
Q 033086 120 CRSRC 124 (128)
Q Consensus 120 Cr~~~ 124 (128)
|-=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 95433
No 212
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.16 E-value=19 Score=20.91 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=7.1
Q ss_pred CCcccccccccc
Q 033086 74 TTEGVCMVCMED 85 (128)
Q Consensus 74 ~~~~~C~IC~~~ 85 (128)
.....|.||+..
T Consensus 43 A~~i~C~VCr~t 54 (86)
T 1wvk_A 43 AMSIQCKVCMQT 54 (86)
T ss_dssp TCCEEETTTTEE
T ss_pred hhCCCChHhHhh
Confidence 344567777654
No 213
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=23.97 E-value=50 Score=18.86 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCccccccccccccCCCCCCe--EcCCCCcccHhhHHHH
Q 033086 74 TTEGVCMVCMEDFDPQEFPGK--QVPCGHVFHAKCISTW 110 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~--~~~C~H~f~~~Ci~~w 110 (128)
.....|.||-..- .+ ..+. ...|...||..|..+-
T Consensus 15 R~~l~C~iC~~~~-~G-AciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 15 RWKLTCYLCKQKG-VG-ASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCBTTTTBCC-SS-CEEECSCTTTCCEEEHHHHHHH
T ss_pred HhcCCCcCCCCCC-Cc-EeEecCCCCCCCcCcHHHHHHC
Confidence 4567899996431 11 1111 2347889999997653
No 214
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.81 E-value=83 Score=19.87 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCCCeEcCCCCcccHhhHHHHhccCccccccCcce
Q 033086 76 EGVCMVCMEDFDPQEFPGKQVPCGHVFHAKCISTWISLSNSCPVCRSRC 124 (128)
Q Consensus 76 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 124 (128)
-+.|..|...+... .. ..=|..||..|..+.+ ...|..|.+.+
T Consensus 33 CF~C~~C~~~L~~~---~f-~~~g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 33 CLKCSDCHVPLAER---CF-SRGESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp TSBCTTTCCBCCSC---CE-ESSSCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred cCccCCCCCcCCCC---Cc-ccCCeeeecccccccc--ccccccccccc
Confidence 35667776666542 12 2345667776665543 23455555433
No 215
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=22.43 E-value=3.4 Score=20.32 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=11.9
Q ss_pred HhhHHHHhccCcccc
Q 033086 104 AKCISTWISLSNSCP 118 (128)
Q Consensus 104 ~~Ci~~w~~~~~~CP 118 (128)
..||..|.+++.+|-
T Consensus 18 mkCiyAWYnqq~sCq 32 (42)
T 1qdp_A 18 MKCIYAWYNQQGSCQ 32 (42)
T ss_dssp CEEECCSSCSCCEEE
T ss_pred HHHHHHHHccCCchH
Confidence 358899998888774
No 216
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.21 E-value=21 Score=15.72 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=7.1
Q ss_pred ccccccccccc
Q 033086 76 EGVCMVCMEDF 86 (128)
Q Consensus 76 ~~~C~IC~~~~ 86 (128)
..+|++|...+
T Consensus 6 ~vqcpvcqq~m 16 (29)
T 3vhs_A 6 QVQCPVCQQMM 16 (29)
T ss_dssp EEECTTTCCEE
T ss_pred eeeChHHHHhC
Confidence 45688886554
No 217
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.59 E-value=12 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.859 Sum_probs=6.1
Q ss_pred ccccccCcce
Q 033086 115 NSCPVCRSRC 124 (128)
Q Consensus 115 ~~CP~Cr~~~ 124 (128)
-.||.|...+
T Consensus 24 IrCpyCGyri 33 (48)
T 4ayb_P 24 VRCPYCGYKI 33 (48)
T ss_dssp SCCTTTCCSC
T ss_pred cccCccCcEE
Confidence 3688886433
No 218
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=21.53 E-value=50 Score=26.75 Aligned_cols=38 Identities=18% Similarity=0.487 Sum_probs=26.6
Q ss_pred ccccccccccccCC----C--CCCeEcCCCCcccHhhHHHHhcc
Q 033086 76 EGVCMVCMEDFDPQ----E--FPGKQVPCGHVFHAKCISTWISL 113 (128)
Q Consensus 76 ~~~C~IC~~~~~~~----~--~~~~~~~C~H~f~~~Ci~~w~~~ 113 (128)
..+||+|+...... + ..-..++|+-.||..|.+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 34688888776432 1 12357889999999999876654
No 219
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.38 E-value=36 Score=18.57 Aligned_cols=7 Identities=71% Similarity=1.711 Sum_probs=2.9
Q ss_pred ccccCcc
Q 033086 117 CPVCRSR 123 (128)
Q Consensus 117 CP~Cr~~ 123 (128)
|..||+.
T Consensus 18 C~~C~kk 24 (64)
T 1wfh_A 18 CTVCRKR 24 (64)
T ss_dssp CTTTCCC
T ss_pred ChhhCCc
Confidence 4444443
No 220
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.96 E-value=38 Score=27.53 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=33.6
Q ss_pred CCccccccccccccCCCCCCe------EcCCCCcc--------------------cHhhHHHHhcc--------Cccccc
Q 033086 74 TTEGVCMVCMEDFDPQEFPGK------QVPCGHVF--------------------HAKCISTWISL--------SNSCPV 119 (128)
Q Consensus 74 ~~~~~C~IC~~~~~~~~~~~~------~~~C~H~f--------------------~~~Ci~~w~~~--------~~~CP~ 119 (128)
-+...|+-|+.++..|..... .+.||..| |..|..+.-.. -..||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 355689999999876643332 34577554 88998886531 236999
Q ss_pred cCcce
Q 033086 120 CRSRC 124 (128)
Q Consensus 120 Cr~~~ 124 (128)
|-=.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 95444
Done!