BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033087
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OA2|A Chain A, Crystal Structure Of Bh2720 (10175341) From Bacillus
           Halodurans At 1.41 A Resolution
          Length = 148

 Score = 28.9 bits (63), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 58  RLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERGRIVDEIDFSTEVYI 117
           R + +G H    +     G+ +G +     ++  + +EG+ +++ G   D + F  EV+ 
Sbjct: 35  RALWTGDHLQVTLXSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQXGHRQDNLHFQEEVFD 94

Query: 118 D 118
           D
Sbjct: 95  D 95


>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
 pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
 pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
 pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
          Length = 148

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/84 (21%), Positives = 33/84 (39%)

Query: 16 CKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSC 75
          C  C     LPE+ +     C R    LF+  V      + ++L+   +  V D +   C
Sbjct: 8  CTACXATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPXVIDFWAPWC 67

Query: 76 GQIVGWKYESAREKSQKYKEGKFV 99
          G    +    A   +++  + +FV
Sbjct: 68 GPCRSFAPIFAETAAERAGKVRFV 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,910
Number of Sequences: 62578
Number of extensions: 120244
Number of successful extensions: 395
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)