Query 033087
Match_columns 128
No_of_seqs 107 out of 329
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 95.2 0.0043 1.5E-07 46.4 0.7 91 12-107 12-107 (145)
2 3ga3_A Interferon-induced heli 94.9 0.021 7.3E-07 42.1 3.7 86 12-102 11-99 (133)
3 3e0o_A Peptide methionine sulf 93.7 0.034 1.1E-06 41.6 2.5 65 12-84 41-105 (144)
4 2qfd_A Probable ATP-dependent 93.5 0.059 2E-06 40.2 3.5 79 12-102 26-116 (145)
5 3hcg_A Peptide methionine sulf 93.5 0.052 1.8E-06 40.6 3.2 67 12-85 42-108 (146)
6 3cxk_A Methionine-R-sulfoxide 92.6 0.049 1.7E-06 41.5 2.0 66 12-84 72-137 (164)
7 2kv1_A Methionine-R-sulfoxide 92.4 0.062 2.1E-06 39.3 2.2 64 12-83 19-82 (124)
8 2kao_A Methionine-R-sulfoxide 92.1 0.071 2.4E-06 38.9 2.2 64 12-83 19-82 (124)
9 3lrr_A Probable ATP-dependent 91.8 0.068 2.3E-06 38.7 1.8 87 12-102 4-94 (121)
10 3mao_A Methionine-R-sulfoxide 91.7 0.058 2E-06 38.4 1.3 64 12-83 12-75 (105)
11 4a2v_A RIG-I, retinoic acid in 90.3 0.11 3.6E-06 38.2 1.6 87 12-102 6-97 (131)
12 2k8d_A Peptide methionine sulf 89.9 0.079 2.7E-06 39.9 0.7 67 12-85 60-126 (151)
13 3e0m_A Peptide methionine sulf 86.3 0.3 1E-05 40.5 2.0 66 12-84 208-273 (313)
14 2l1u_A MSRB2, methionine-R-sul 86.1 0.18 6.1E-06 37.6 0.5 85 12-108 36-128 (143)
15 3hcj_A MSRB, peptide methionin 86.0 0.11 3.9E-06 39.1 -0.6 66 12-84 49-114 (154)
16 4gl2_A Interferon-induced heli 64.1 2 6.9E-05 36.5 0.9 87 12-103 585-674 (699)
17 2ykg_A Probable ATP-dependent 60.2 6.5 0.00022 33.3 3.4 87 12-102 577-667 (696)
18 4a2w_A RIG-I, retinoic acid in 58.6 2 7E-05 39.0 0.0 87 12-102 811-902 (936)
19 1x6m_A GFA, glutathione-depend 51.7 23 0.00079 26.3 4.9 20 66-85 95-114 (196)
20 3fac_A Putative uncharacterize 37.1 24 0.00083 23.8 2.8 18 66-83 64-81 (118)
21 2lvu_A Zinc finger and BTB dom 42.6 7.5 0.00025 17.9 0.0 18 13-30 2-19 (26)
22 1iz6_A Initiation factor 5A; S 33.7 30 0.001 24.8 2.9 32 34-65 34-65 (138)
23 2m0e_A Zinc finger and BTB dom 31.9 10 0.00035 17.4 0.1 18 13-30 2-19 (29)
24 2eif_A IF-5A, protein (eukaryo 30.7 35 0.0012 24.2 2.8 30 35-64 39-68 (136)
25 1rik_A E6APC1 peptide; E6-bind 29.7 12 0.0004 17.4 0.1 17 13-29 2-18 (29)
26 1nyp_A Pinch protein; LIM doma 28.8 17 0.00057 21.6 0.7 14 12-25 30-43 (66)
27 2lvr_A Zinc finger and BTB dom 34.0 12 0.00043 17.4 0.0 19 12-30 2-20 (30)
28 2iyb_E Testin, TESS, TES; LIM 27.7 15 0.00051 22.0 0.3 12 13-24 32-43 (65)
29 1bkb_A Translation initiation 27.5 46 0.0016 23.5 3.0 31 35-65 37-67 (136)
30 1x61_A Thyroid receptor intera 27.5 22 0.00076 21.4 1.1 13 12-24 32-44 (72)
31 3cpf_A Eukaryotic translation 26.8 39 0.0013 24.1 2.5 31 35-65 35-65 (138)
32 2lvt_A Zinc finger and BTB dom 32.7 14 0.00047 17.3 0.0 18 13-30 2-19 (29)
33 3er0_A Eukaryotic translation 25.8 56 0.0019 24.3 3.3 32 34-65 58-89 (167)
34 2kvh_A Zinc finger and BTB dom 25.7 9.9 0.00034 17.6 -0.6 18 12-29 2-19 (27)
35 2kvf_A Zinc finger and BTB dom 24.0 11 0.00037 17.5 -0.7 18 12-29 2-19 (28)
36 1klr_A Zinc finger Y-chromosom 23.7 12 0.00041 17.3 -0.6 18 13-30 2-19 (30)
37 2d8z_A Four and A half LIM dom 23.2 24 0.00083 21.0 0.7 12 13-24 31-42 (70)
38 1a7i_A QCRP2 (LIM1); LIM domai 22.5 41 0.0014 20.7 1.7 15 12-26 33-47 (81)
39 1x4l_A Skeletal muscle LIM-pro 22.3 30 0.001 20.8 1.0 13 12-24 34-46 (72)
40 2m0d_A Zinc finger and BTB dom 22.2 13 0.00043 17.2 -0.7 18 12-29 2-19 (30)
41 1x68_A FHL5 protein; four-and- 22.2 28 0.00095 21.3 0.8 13 12-24 34-46 (76)
42 3hks_A EIF-5A-2, eukaryotic tr 22.1 64 0.0022 24.0 2.9 31 35-65 57-87 (167)
43 2cur_A Skeletal muscle LIM-pro 21.9 27 0.00093 20.8 0.7 12 13-24 31-42 (69)
44 2m0f_A Zinc finger and BTB dom 21.8 13 0.00045 17.1 -0.7 17 13-29 2-18 (29)
45 1paa_A Yeast transcription fac 21.6 12 0.00041 17.5 -0.8 17 13-29 2-18 (30)
46 2egq_A FHL1 protein; LIM domai 21.4 20 0.00069 21.8 0.1 11 14-24 47-57 (77)
47 1fv5_A First zinc finger of U- 21.1 13 0.00044 20.4 -0.9 19 12-30 7-25 (36)
48 1wyh_A SLIM 2, skeletal muscle 20.8 38 0.0013 20.2 1.2 13 13-25 33-45 (72)
49 1twf_J DNA-directed RNA polyme 20.8 8.8 0.0003 25.3 -1.8 18 68-85 3-20 (70)
50 2ehe_A Four and A half LIM dom 20.4 29 0.001 21.4 0.6 16 15-30 17-32 (82)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=95.24 E-value=0.0043 Score=46.44 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=58.9
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCC----CeEEEEecccccccCccc-eeEeeeecEEEeeeeeccCCCceeeEEEEe
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRR----GKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESA 86 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~----G~AyLf~~vvNv~~g~~e-~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A 86 (128)
-.+.|++|.+.++..+||-.-. +.| +++| ...+.+..+|.. ++. ..+-.+-..|.|.+|++.+|-....-
T Consensus 12 vkllCrkC~~~~C~g~DIr~ie--~~HhVnv~p~F--~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m~yk 86 (145)
T 3eqt_A 12 VQLLCINCMVAVGHGSDLRKVE--GTHHVNVNPNF--SNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQMIYK 86 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEET--TTEEEECCGGG--GGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEEEET
T ss_pred eEEECCCCCeeEEeccceEEec--cceEEeeChhh--eeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhEEec
Confidence 5699999999999999985431 111 1111 122222222211 111 23445678899999999999887766
Q ss_pred cccCcceecCeEEEEecceec
Q 033087 87 REKSQKYKEGKFVLERGRIVD 107 (128)
Q Consensus 87 ~e~sqkYKEGkfILE~~~l~~ 107 (128)
--+=.-.|.-.|+||...-.+
T Consensus 87 ~~~LP~LkIksFVve~~~g~~ 107 (145)
T 3eqt_A 87 SVKLPVLKVRSMLLETPQGRI 107 (145)
T ss_dssp TEEEEEECGGGEEEEETTEEE
T ss_pred cccCceEeEEEEEEEcCCCcE
Confidence 666778899999998755443
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=94.92 E-value=0.021 Score=42.11 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=56.5
Q ss_pred ceEEecCCCcccCCCCCeeeee--ecCCCCeEEEEecccccccCccc-eeEeeeecEEEeeeeeccCCCceeeEEEEecc
Q 033087 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESARE 88 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~--f~G~~G~AyLf~~vvNv~~g~~e-~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e 88 (128)
-.+.|++|.+.++..+||-.-. -.=.-+++| ...+.+. +++. .+. ..+-.+-..|.|. |++.+|-....---
T Consensus 11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~-~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~ 85 (133)
T 3ga3_A 11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVR-ENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGL 85 (133)
T ss_dssp EEEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEE-CCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTE
T ss_pred EEEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEec-CCCCccch-hccccCCceEEEe-cCChhhhhEEeccc
Confidence 4589999999999999975431 111111111 2333333 2222 233 4566778889999 99999987766555
Q ss_pred cCcceecCeEEEEe
Q 033087 89 KSQKYKEGKFVLER 102 (128)
Q Consensus 89 ~sqkYKEGkfILE~ 102 (128)
+=.-.|.-.|+||.
T Consensus 86 ~LP~LkIksFVve~ 99 (133)
T 3ga3_A 86 DLPCLKIRNFVVVF 99 (133)
T ss_dssp EEEEECGGGEEEEE
T ss_pred cCceEEEEEEEEEc
Confidence 56778888999886
No 3
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=93.73 E-value=0.034 Score=41.61 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=41.9
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~ 84 (128)
-+|.|+.|.++|=.+++ .|....|=--.+..+-+ .+...+|+. -|+.. ..|.|..|+.+||--..
T Consensus 41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~ 105 (144)
T 3e0o_A 41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFN 105 (144)
T ss_dssp EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEES
T ss_pred EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccC
Confidence 78999999999877653 45555654433444433 333333432 24433 46999999999998654
No 4
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=93.50 E-value=0.059 Score=40.24 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=54.2
Q ss_pred ceEEecCCCcccCCCCCee----------eeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeec--cCCCce
Q 033087 12 RSYRCKFCRTHLALPEDLV----------SRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIV 79 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~li----------Sk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~l 79 (128)
-.+.|++|.+.++..+||- .+.|. ..+.+.. .+.++ ..-+-.+-..|+|. +|++.+
T Consensus 26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~-~~~~k-~f~d~~~~g~I~C~~~~Cg~~W 93 (145)
T 2qfd_A 26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRP-HPKPK-QFSSFEKRAKIFCARQNCSHDW 93 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEE-CSSCC-CCSSEEEEEEEEECSTTTCCEE
T ss_pred eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcC-Ccccc-hhhceeCCceEEeCCcccCcch
Confidence 5699999999999999983 33443 2222221 11111 13344667899999 999999
Q ss_pred eeEEEEecccCcceecCeEEEEe
Q 033087 80 GWKYESAREKSQKYKEGKFVLER 102 (128)
Q Consensus 80 GWkY~~A~e~sqkYKEGkfILE~ 102 (128)
|-....---+-.-.|.-.|+||.
T Consensus 94 G~~m~yk~~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 94 GIHVKYKTFEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEETTEEEEEECGGGEEEEC
T ss_pred hceEEEccccCceEEEEEEEEEe
Confidence 98766555557778888999985
No 5
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=93.47 E-value=0.052 Score=40.65 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=41.2
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~ 85 (128)
-+|.|+.|.++|=.++ ..|....|=--.+..+-.-.+...+|+.+ |+. -..|.|+.|+.+||--...
T Consensus 42 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 108 (146)
T 3hcg_A 42 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMR-RTEVRSHAADSHLGHVFPD 108 (146)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEET--TEE-EEEEEETTTCCEEEEEESC
T ss_pred EEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCCC--CcE-EEEEEeCCCCCccCceeCC
Confidence 7899999999986654 34665566543343332212222334321 443 3578999999999986543
No 6
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=92.57 E-value=0.049 Score=41.49 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=41.0
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~ 84 (128)
-+|.|+.|.++|=.+++ .|....|=.-.++-+-+-.+...+|.. -|+ .-..|.|..|+.+||--..
T Consensus 72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~ 137 (164)
T 3cxk_A 72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE 137 (164)
T ss_dssp EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence 78999999999876653 465555544334433222222333332 144 2456999999999998553
No 7
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=92.38 E-value=0.062 Score=39.29 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=37.3
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY 83 (128)
-+|.|+.|.++|=.+++= |....|=.-.++.+-.-.+-..+++ .++. ...|.|++|+.+||=-.
T Consensus 19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 689999999999887653 5444443222222211111111121 2221 35799999999999743
No 8
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=92.06 E-value=0.071 Score=38.95 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=37.6
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY 83 (128)
-+|.|+.|.++|=.+++ .|....|=--.++.+-.-.+...+|.. + +.-..|.|+.|+.+||=-.
T Consensus 19 GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 19 GVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred EEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 78999999999988764 344444432222222111111111211 1 1236899999999999854
No 9
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=91.77 E-value=0.068 Score=38.71 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=56.0
Q ss_pred ceEEecCCCcccCCCCCeeeee--ecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 033087 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~--f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~A~ 87 (128)
..+.|++|.+.++..+||-.-. -+=.-+++| ...+.+..-+. ++. .-+-++-..|.|. +|++.+|-....--
T Consensus 4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 79 (121)
T 3lrr_A 4 KKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 79 (121)
T ss_dssp EEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred EEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence 4689999999999999974331 000011111 12233322221 222 2355678889999 99999998877655
Q ss_pred ccCcceecCeEEEEe
Q 033087 88 EKSQKYKEGKFVLER 102 (128)
Q Consensus 88 e~sqkYKEGkfILE~ 102 (128)
-+=.-.|.-.|+||.
T Consensus 80 ~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 80 FEIPVIKIESFVVED 94 (121)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred ccCceEEEEEEEEEe
Confidence 557788899999887
No 10
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=91.70 E-value=0.058 Score=38.37 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=38.4
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY 83 (128)
-+|.|+.|.++|=.++ ..|....|=--.++.+-.-.+...+|. .++ .-..|.|..|+.+||--.
T Consensus 12 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 12 GVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 7899999999986655 345555554333333321111111221 121 246899999999999855
No 11
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=90.30 E-value=0.11 Score=38.20 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=52.4
Q ss_pred ceEEecCCCcccCCCCCeeeee--ecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 033087 12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~--f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~A~ 87 (128)
..+.|++|.+.++..+||-.-. -+=.-+++| ...+.+..-+. ++. .-+-++-..|.|. +|++.+|-....--
T Consensus 6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 81 (131)
T 4a2v_A 6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 81 (131)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred eEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence 5689999999999999974321 000001111 12222211111 122 2345677889999 99999998765543
Q ss_pred cc-CcceecCeEEEEe
Q 033087 88 EK-SQKYKEGKFVLER 102 (128)
Q Consensus 88 e~-sqkYKEGkfILE~ 102 (128)
-+ =.-.|.-.|+||.
T Consensus 82 ~~~LP~LkIksFVve~ 97 (131)
T 4a2v_A 82 FDNLPVIKIKSFVMES 97 (131)
T ss_dssp EEEEEEECGGGEEECC
T ss_pred cccCceEeEEEEEEEe
Confidence 33 5677888888876
No 12
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.94 E-value=0.079 Score=39.88 Aligned_cols=67 Identities=24% Similarity=0.548 Sum_probs=41.5
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES 85 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~ 85 (128)
-+|.|+.|.++|=.+++ -|....|=--.+..+-.-.+...+|+.+ |+. -..|.|..|+.+||--...
T Consensus 60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence 78999999999866653 4655566433344432212223333321 333 2468999999999986643
No 13
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=86.28 E-value=0.3 Score=40.48 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=40.1
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~ 84 (128)
-+|.|+.|.++|=+++ .-|....|=--.+..+-.-.+...+|+.+ |+. =..|.|..|+.+||--..
T Consensus 208 G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~ 273 (313)
T 3e0m_A 208 GIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFT 273 (313)
T ss_dssp EEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEES
T ss_pred eEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccC
Confidence 7899999999986654 34655555433333332111222233321 443 357999999999998553
No 14
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=86.07 E-value=0.18 Score=37.59 Aligned_cols=85 Identities=15% Similarity=0.299 Sum_probs=46.3
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccc--------cCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNIT--------VGASEERLMLSGMHTVADIFCCSCGQIVGWKY 83 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~--------~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY 83 (128)
-+|.|+.|.++|=++++ .|....|=.- |.+.+++. +...+|+. -|+. =..|.|..|+.+||=-.
T Consensus 36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence 78999999999866643 4554444322 23333211 11112221 1333 34699999999999865
Q ss_pred EEecccCcceecCeEEEEecceecc
Q 033087 84 ESAREKSQKYKEGKFVLERGRIVDE 108 (128)
Q Consensus 84 ~~A~e~sqkYKEGkfILE~~~l~~~ 108 (128)
.. .+.. +==+|-|.-+-|.-+
T Consensus 108 ~D--GP~p--tg~RyCINS~sL~F~ 128 (143)
T 2l1u_A 108 PD--GPKP--TGQRFCINSVALKFK 128 (143)
T ss_dssp CC--SSCG--GGCEEEECCTTEEEE
T ss_pred CC--CCCC--CCCEEEeeeeEEecc
Confidence 43 2211 112566655555444
No 15
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=85.96 E-value=0.11 Score=39.11 Aligned_cols=66 Identities=21% Similarity=0.432 Sum_probs=37.4
Q ss_pred ceEEecCCCcccCCCCCeeeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 033087 12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE 84 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~ 84 (128)
-+|.|+.|.++|=.+++ .|....|=--.+.-+-.-.+...+|.. -|+. =..|.|..|+.+||--..
T Consensus 49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~ 114 (154)
T 3hcj_A 49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP 114 (154)
T ss_dssp EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence 78999999999866553 354444432222222111111111211 1332 257899999999998554
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=64.08 E-value=2 Score=36.45 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=45.6
Q ss_pred ceEEecCCCcccCCCCCeeee--eecCCCCeEEEEecccccccCcc-ceeEeeeecEEEeeeeeccCCCceeeEEEEecc
Q 033087 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGAS-EERLMLSGMHTVADIFCCSCGQIVGWKYESARE 88 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~vvNv~~g~~-e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e 88 (128)
....|.+|.+.++..++|-.- .-+=.-.++| .....+. .+. .++ ...+......|+|. |+..+|-.+..---
T Consensus 585 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~-~~~~~~~~~~~~c~-~~~~~g~~~~~~~~ 659 (699)
T 4gl2_A 585 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVR-ENKTLQK-KCADYQINGEIICK-CGQAWGTMMVHKGL 659 (699)
T ss_dssp EEEEESSSCCEEEEGGGCEEETTTEEECCCHHH--HHHCEEC-----------------CEEECS-SSCEEEEECCCC--
T ss_pred eEEECCCCCcEEEehhheeeeccCceEeeCcch--hhheeec-CCCccch-hhhccccCCcEEee-cCchhhHHeeEccc
Confidence 457899999999999887431 1000011111 2333332 222 122 23455667889999 99999987655444
Q ss_pred cCcceecCeEEEEec
Q 033087 89 KSQKYKEGKFVLERG 103 (128)
Q Consensus 89 ~sqkYKEGkfILE~~ 103 (128)
+=.-.|.=.|++|..
T Consensus 660 ~~p~~~~~~~~~~~~ 674 (699)
T 4gl2_A 660 DLPCLKIRNFVVVFK 674 (699)
T ss_dssp -CEEECGGGEEEEET
T ss_pred ccceeEEEEEEEEcC
Confidence 566777788888763
No 17
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.24 E-value=6.5 Score=33.28 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=52.4
Q ss_pred ceEEecCCCcccCCCCCe--eeeeecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 033087 12 RSYRCKFCRTHLALPEDL--VSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--iSk~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~A~ 87 (128)
....|.+|...++..++| +..+.+=.-.++ |...+.+.. ++.++. .........|+|. +|+..+|-.+..-.
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 652 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRP-HPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 652 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEE-EEEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETT
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeecc-CCcccc-ccccccCCceEeCCCCCCccccceEEEcc
Confidence 457899999999999885 222111111122 111111111 111222 2344557888999 99999999885544
Q ss_pred ccCcceecCeEEEEe
Q 033087 88 EKSQKYKEGKFVLER 102 (128)
Q Consensus 88 e~sqkYKEGkfILE~ 102 (128)
-+=..+|...|++|.
T Consensus 653 ~~lp~~~~~~~~~~~ 667 (696)
T 2ykg_A 653 FEIPVIKIESFVVED 667 (696)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred eecceeeeeeEEEEe
Confidence 556677889999984
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.57 E-value=2 Score=38.95 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred ceEEecCCCcccCCCCCeeee--eecCCCCeEEEEecccccccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 033087 12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR 87 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~A~ 87 (128)
..+.|.+|...++..+||-.- +-+=.-+++|- ..+++..-+. ++. .-..+....|+|. +|+..+|-....--
T Consensus 811 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f~--~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 886 (936)
T 4a2w_A 811 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAFK--ERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 886 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCCceeechhhheeecCCCeEecChhhh--hheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEecc
Confidence 468999999999999997322 21111223331 2223322111 222 3345567889999 99999997654322
Q ss_pred cc-CcceecCeEEEEe
Q 033087 88 EK-SQKYKEGKFVLER 102 (128)
Q Consensus 88 e~-sqkYKEGkfILE~ 102 (128)
-+ =.-.|.-.|++|.
T Consensus 887 ~~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 887 FDNLPVIKIKSFVMES 902 (936)
T ss_dssp ----------------
T ss_pred cccCceeeeeeEEEEe
Confidence 22 3455666788776
No 19
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=51.69 E-value=23 Score=26.34 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.6
Q ss_pred EEeeeeeccCCCceeeEEEE
Q 033087 66 TVADIFCCSCGQIVGWKYES 85 (128)
Q Consensus 66 ~V~DI~C~~C~~~lGWkY~~ 85 (128)
.+.--||..|++.|-|..+.
T Consensus 95 ~~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp SEEEEEETTTCCEEEEEECC
T ss_pred CeeeEECCCCCCcCCccccc
Confidence 35667999999999886543
No 20
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=37.12 E-value=24 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=14.5
Q ss_pred EEeeeeeccCCCceeeEE
Q 033087 66 TVADIFCCSCGQIVGWKY 83 (128)
Q Consensus 66 ~V~DI~C~~C~~~lGWkY 83 (128)
.+.--||..|++.|-|..
T Consensus 64 ~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CSEEEEETTTCCEEEEEC
T ss_pred CEeeEECCCCCccccCcc
Confidence 456679999999998854
No 21
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.61 E-value=7.5 Score=17.95 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=13.8
Q ss_pred eEEecCCCcccCCCCCee
Q 033087 13 SYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~li 30 (128)
.|.|..|..-+...+.|.
T Consensus 2 p~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLA 19 (26)
Confidence 588999988877766654
No 22
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=33.66 E-value=30 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=27.5
Q ss_pred ecCCCCeEEEEecccccccCccceeEeeeecE
Q 033087 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (128)
Q Consensus 34 f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h 65 (128)
=.|+||.|+.=-++.|+..|...++.+.+|--
T Consensus 34 KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ 65 (138)
T 1iz6_A 34 SPGKHGSAKARIEAVGIFDGKVRSIVKPTSAE 65 (138)
T ss_dssp CCCTTSCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCCCCCceEEEEEEEECCCCCEEEEEecCCCE
Confidence 36999999988899999999998888887753
No 23
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.90 E-value=10 Score=17.41 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=13.5
Q ss_pred eEEecCCCcccCCCCCee
Q 033087 13 SYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~li 30 (128)
.|.|..|...+.....|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 578999988877766553
No 24
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=30.74 E-value=35 Score=24.24 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.9
Q ss_pred cCCCCeEEEEecccccccCccceeEeeeec
Q 033087 35 HCRRGKAYLFNSAVNITVGASEERLMLSGM 64 (128)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 64 (128)
.|+||.|+.=-++.|+..|...++.+.+|-
T Consensus 39 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 39 PGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 599999998889999999998888777765
No 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.73 E-value=12 Score=17.40 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=12.7
Q ss_pred eEEecCCCcccCCCCCe
Q 033087 13 SYRCKFCRTHLALPEDL 29 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (128)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 2 KFACPECPKRFMRSDHL 18 (29)
T ss_dssp CEECSSSSCEESCSHHH
T ss_pred CccCCCCCchhCCHHHH
Confidence 58899998877665554
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.85 E-value=17 Score=21.62 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=10.4
Q ss_pred ceEEecCCCcccCC
Q 033087 12 RSYRCKFCRTHLAL 25 (128)
Q Consensus 12 ~~y~C~~C~thLa~ 25 (128)
.-|.|..|+.+|..
T Consensus 30 ~CF~C~~C~~~L~~ 43 (66)
T 1nyp_A 30 EHFVCAKCEKPFLG 43 (66)
T ss_dssp TTCBCTTTCCBCSS
T ss_pred CcCEECCCCCCCCC
Confidence 34788888888864
No 27
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=34.04 E-value=12 Score=17.37 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=13.8
Q ss_pred ceEEecCCCcccCCCCCee
Q 033087 12 RSYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~li 30 (128)
+.|.|..|...+...+.|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 3588999988777666554
No 28
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.66 E-value=15 Score=22.03 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.0
Q ss_pred eEEecCCCcccC
Q 033087 13 SYRCKFCRTHLA 24 (128)
Q Consensus 13 ~y~C~~C~thLa 24 (128)
-|.|..|+.+|.
T Consensus 32 CF~C~~C~~~L~ 43 (65)
T 2iyb_E 32 CFLCSCCSKCLI 43 (65)
T ss_dssp TSBCTTTCCBCT
T ss_pred CEECCCCCCcCC
Confidence 367888888875
No 29
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=27.55 E-value=46 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=27.1
Q ss_pred cCCCCeEEEEecccccccCccceeEeeeecE
Q 033087 35 HCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (128)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h 65 (128)
.|++|.|+.=-++.|+..|...++.+.+|--
T Consensus 37 pGKgG~A~vr~k~knl~tG~~~e~tf~s~~k 67 (136)
T 1bkb_A 37 TGKHGSAKARIVAVGVFDGGKRTLSLPVDAQ 67 (136)
T ss_dssp CSTTSCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred CCCCCceEEEEEEEECCCCCeEEEEEcCCCE
Confidence 6999999988899999999998888887753
No 30
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.50 E-value=22 Score=21.35 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=9.7
Q ss_pred ceEEecCCCcccC
Q 033087 12 RSYRCKFCRTHLA 24 (128)
Q Consensus 12 ~~y~C~~C~thLa 24 (128)
.-|.|..|+.+|.
T Consensus 32 ~CF~C~~C~~~L~ 44 (72)
T 1x61_A 32 GCFVCSTCRAQLR 44 (72)
T ss_dssp TTCBCSSSCCBCT
T ss_pred cCCcccccCCcCC
Confidence 3478888888884
No 31
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=26.80 E-value=39 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=22.8
Q ss_pred cCCCCeEEEEecccccccCccceeEeeeecE
Q 033087 35 HCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (128)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h 65 (128)
.|++|.|+.--++.|+..|...++.+.+|--
T Consensus 35 pGKgG~A~vr~k~knl~TG~~~e~tf~s~~k 65 (138)
T 3cpf_A 35 TGKHGHAKVHLVGIDIFTGKKYEDICPSTHN 65 (138)
T ss_dssp C----CCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred CCCCccEEEEEEEEECCCCCEEEEEeCCCCE
Confidence 6999999888899999999998888777653
No 32
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.67 E-value=14 Score=17.29 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=13.5
Q ss_pred eEEecCCCcccCCCCCee
Q 033087 13 SYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~li 30 (128)
.|.|..|..-+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLI 19 (29)
Confidence 588999988777766654
No 33
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=25.79 E-value=56 Score=24.30 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.0
Q ss_pred ecCCCCeEEEEecccccccCccceeEeeeecE
Q 033087 34 FHCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (128)
Q Consensus 34 f~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h 65 (128)
=.|+||.|+.=-++.|+..|...++.+.+|--
T Consensus 58 KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 58 KTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp CCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred CCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 36999999988899999999998888877643
No 34
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.72 E-value=9.9 Score=17.64 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=12.5
Q ss_pred ceEEecCCCcccCCCCCe
Q 033087 12 RSYRCKFCRTHLALPEDL 29 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (128)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 468999998776654433
No 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.97 E-value=11 Score=17.51 Aligned_cols=18 Identities=28% Similarity=0.855 Sum_probs=12.6
Q ss_pred ceEEecCCCcccCCCCCe
Q 033087 12 RSYRCKFCRTHLALPEDL 29 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (128)
+.|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 358999998776655443
No 36
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.74 E-value=12 Score=17.29 Aligned_cols=18 Identities=28% Similarity=0.752 Sum_probs=13.3
Q ss_pred eEEecCCCcccCCCCCee
Q 033087 13 SYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~li 30 (128)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 478999988877765553
No 37
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.20 E-value=24 Score=21.03 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.1
Q ss_pred eEEecCCCcccC
Q 033087 13 SYRCKFCRTHLA 24 (128)
Q Consensus 13 ~y~C~~C~thLa 24 (128)
-|.|..|+.+|.
T Consensus 31 CF~C~~C~~~L~ 42 (70)
T 2d8z_A 31 CFVCTACRKQLS 42 (70)
T ss_dssp TSBCSSSCCBCT
T ss_pred CCccCCCCCcCC
Confidence 477888888875
No 38
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.47 E-value=41 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=10.3
Q ss_pred ceEEecCCCcccCCC
Q 033087 12 RSYRCKFCRTHLALP 26 (128)
Q Consensus 12 ~~y~C~~C~thLa~~ 26 (128)
.-|.|..|+.+|...
T Consensus 33 ~CF~C~~C~~~L~~~ 47 (81)
T 1a7i_A 33 CCFLCMVCRKNLDST 47 (81)
T ss_dssp SSEECSSSCCEECSS
T ss_pred ccCccCCCCCCCCCC
Confidence 347788888777654
No 39
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.28 E-value=30 Score=20.79 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=9.9
Q ss_pred ceEEecCCCcccC
Q 033087 12 RSYRCKFCRTHLA 24 (128)
Q Consensus 12 ~~y~C~~C~thLa 24 (128)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 34 DCFNCKKCSLSLV 46 (72)
T ss_dssp TTCBCSSSCCBCT
T ss_pred ccCEeccCCCcCC
Confidence 4478888888886
No 40
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.20 E-value=13 Score=17.21 Aligned_cols=18 Identities=22% Similarity=0.826 Sum_probs=12.5
Q ss_pred ceEEecCCCcccCCCCCe
Q 033087 12 RSYRCKFCRTHLALPEDL 29 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (128)
+.|.|..|..-+.....|
T Consensus 2 k~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CCEECTTTCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 368999998776654443
No 41
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.15 E-value=28 Score=21.29 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=9.0
Q ss_pred ceEEecCCCcccC
Q 033087 12 RSYRCKFCRTHLA 24 (128)
Q Consensus 12 ~~y~C~~C~thLa 24 (128)
.-|.|..|+.+|.
T Consensus 34 ~CF~C~~C~~~L~ 46 (76)
T 1x68_A 34 ECFNCGKCSVSLV 46 (76)
T ss_dssp GGCBCTTTCCBCS
T ss_pred ccCChhhCCCcCC
Confidence 3477777777775
No 42
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=22.07 E-value=64 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.8
Q ss_pred cCCCCeEEEEecccccccCccceeEeeeecE
Q 033087 35 HCRRGKAYLFNSAVNITVGASEERLMLSGMH 65 (128)
Q Consensus 35 ~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~h 65 (128)
.|++|.|+.=-++.|+..|...++...+|--
T Consensus 57 pGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 57 TGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp SSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred CCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 6999999998899999999998888877753
No 43
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.87 E-value=27 Score=20.82 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=8.3
Q ss_pred eEEecCCCcccC
Q 033087 13 SYRCKFCRTHLA 24 (128)
Q Consensus 13 ~y~C~~C~thLa 24 (128)
-|.|..|+.+|.
T Consensus 31 CF~C~~C~~~L~ 42 (69)
T 2cur_A 31 CFVCVTCSKKLA 42 (69)
T ss_dssp TTBCTTTCCBCT
T ss_pred cCEECCCCCCCC
Confidence 367777777775
No 44
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.79 E-value=13 Score=17.06 Aligned_cols=17 Identities=18% Similarity=0.634 Sum_probs=11.7
Q ss_pred eEEecCCCcccCCCCCe
Q 033087 13 SYRCKFCRTHLALPEDL 29 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (128)
.|.|..|..-+.....|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CEECTTTSCEESCHHHH
T ss_pred CccCCCCCCccCChhHH
Confidence 58899998766654443
No 45
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.62 E-value=12 Score=17.51 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=12.2
Q ss_pred eEEecCCCcccCCCCCe
Q 033087 13 SYRCKFCRTHLALPEDL 29 (128)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (128)
.|.|..|...+...+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 47899998777665544
No 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.41 E-value=20 Score=21.83 Aligned_cols=11 Identities=45% Similarity=1.090 Sum_probs=7.0
Q ss_pred EEecCCCcccC
Q 033087 14 YRCKFCRTHLA 24 (128)
Q Consensus 14 y~C~~C~thLa 24 (128)
|.|..|+.+|.
T Consensus 47 F~C~~C~~~L~ 57 (77)
T 2egq_A 47 FHCKKCSVNLA 57 (77)
T ss_dssp CBCSSSCCBCT
T ss_pred CEehhcCCCCC
Confidence 66666666665
No 47
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.11 E-value=13 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=15.4
Q ss_pred ceEEecCCCcccCCCCCee
Q 033087 12 RSYRCKFCRTHLALPEDLV 30 (128)
Q Consensus 12 ~~y~C~~C~thLa~~~~li 30 (128)
+.|.|..|..-++..+.|.
T Consensus 7 kp~~C~~CgK~F~~~s~L~ 25 (36)
T 1fv5_A 7 ARFMCLPCGIAFSSPSTLE 25 (36)
T ss_dssp CCCEETTTTEECSCHHHHH
T ss_pred cCeECCCCCCccCCHhHcc
Confidence 7899999998887766654
No 48
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.82 E-value=38 Score=20.19 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=8.9
Q ss_pred eEEecCCCcccCC
Q 033087 13 SYRCKFCRTHLAL 25 (128)
Q Consensus 13 ~y~C~~C~thLa~ 25 (128)
-|.|..|+.+|..
T Consensus 33 CF~C~~C~~~L~~ 45 (72)
T 1wyh_A 33 CFLCSGCEQPLGS 45 (72)
T ss_dssp TCBCTTTCCBTTT
T ss_pred cCeECCCCCcCCC
Confidence 4677777777754
No 49
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.75 E-value=8.8 Score=25.26 Aligned_cols=18 Identities=50% Similarity=0.977 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeeEEEE
Q 033087 68 ADIFCCSCGQIVGWKYES 85 (128)
Q Consensus 68 ~DI~C~~C~~~lGWkY~~ 85 (128)
-+|.|-+|+..+|=+|++
T Consensus 3 iPVRCFTCGkvi~~~we~ 20 (70)
T 1twf_J 3 VPVRCFSCGKVVGDKWES 20 (70)
T ss_dssp CCSBCTTTCCBCTTCHHH
T ss_pred CCeecCCCCCChHHHHHH
Confidence 468999999999987754
No 50
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=29 Score=21.41 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=8.1
Q ss_pred EecCCCcccCCCCCee
Q 033087 15 RCKFCRTHLALPEDLV 30 (128)
Q Consensus 15 ~C~~C~thLa~~~~li 30 (128)
.|..|+.++...+.+|
T Consensus 17 ~C~~C~~~I~~~~~~~ 32 (82)
T 2ehe_A 17 TCAECQQLIGHDSREL 32 (82)
T ss_dssp BCTTTCCBCCSSCCBC
T ss_pred cCccCCCccccCcEEE
Confidence 4566666655433333
Done!