Query 033088
Match_columns 127
No_of_seqs 133 out of 1149
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-39 4.4E-44 202.0 12.6 125 1-126 2-128 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 8.9E-35 1.9E-39 180.6 12.7 120 6-126 3-124 (200)
3 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.3E-34 4.9E-39 183.1 14.9 121 5-125 2-122 (182)
4 cd04133 Rop_like Rop subfamily 100.0 4.2E-34 9.2E-39 181.0 15.7 118 9-126 2-119 (176)
5 cd04131 Rnd Rnd subfamily. Th 100.0 3.2E-34 7E-39 182.0 15.1 118 8-125 1-118 (178)
6 KOG0098 GTPase Rab2, small G p 100.0 8.8E-35 1.9E-39 179.8 11.7 123 3-126 1-125 (216)
7 cd01875 RhoG RhoG subfamily. 100.0 4.6E-34 1E-38 183.1 15.2 120 7-126 2-121 (191)
8 KOG0078 GTP-binding protein SE 100.0 1.6E-34 3.5E-39 182.1 12.2 125 1-126 4-131 (207)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-34 3.5E-39 179.9 11.9 119 7-126 21-142 (221)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 6.6E-34 1.4E-38 179.0 12.0 122 4-126 10-133 (222)
11 KOG0079 GTP-binding protein H- 100.0 9.8E-35 2.1E-39 173.9 7.8 125 1-126 1-126 (198)
12 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.4E-33 9.6E-38 176.3 15.1 117 9-125 2-118 (175)
13 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.9E-33 6.3E-38 182.5 14.5 119 8-126 1-119 (222)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.3E-33 7.1E-38 183.2 14.6 120 6-125 11-130 (232)
15 KOG0394 Ras-related GTPase [Ge 100.0 9.8E-34 2.1E-38 174.9 10.8 125 1-126 1-132 (210)
16 cd04121 Rab40 Rab40 subfamily. 100.0 5.6E-33 1.2E-37 177.6 14.7 121 5-126 3-124 (189)
17 cd04120 Rab12 Rab12 subfamily. 100.0 1.2E-32 2.6E-37 177.6 14.0 116 9-125 1-118 (202)
18 cd01871 Rac1_like Rac1-like su 100.0 2.5E-32 5.3E-37 172.8 15.1 117 9-125 2-118 (174)
19 cd04134 Rho3 Rho3 subfamily. 100.0 7.6E-32 1.6E-36 172.5 15.4 118 9-126 1-118 (189)
20 KOG0080 GTPase Rab18, small G 100.0 1.7E-32 3.7E-37 166.3 10.9 121 5-126 8-131 (209)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.1E-32 1.5E-36 170.4 13.5 118 8-126 2-121 (172)
22 KOG0086 GTPase Rab4, small G p 100.0 1.3E-32 2.8E-37 165.8 8.9 125 1-126 2-128 (214)
23 PLN03071 GTP-binding nuclear p 100.0 2.1E-31 4.6E-36 173.9 14.8 119 6-125 11-130 (219)
24 cd04136 Rap_like Rap-like subf 100.0 2.7E-31 5.9E-36 165.8 13.8 118 8-126 1-120 (163)
25 cd04122 Rab14 Rab14 subfamily. 100.0 2.8E-31 6E-36 166.6 13.9 118 8-126 2-121 (166)
26 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.7E-31 1.5E-35 165.9 15.3 117 9-125 1-117 (173)
27 KOG0093 GTPase Rab3, small G p 100.0 1.1E-31 2.4E-36 160.6 11.0 119 7-126 20-140 (193)
28 smart00174 RHO Rho (Ras homolo 100.0 4.7E-31 1E-35 166.5 14.5 116 11-126 1-116 (174)
29 PTZ00369 Ras-like protein; Pro 100.0 4.3E-31 9.3E-36 169.0 14.2 119 6-125 3-123 (189)
30 cd04132 Rho4_like Rho4-like su 100.0 3.9E-31 8.4E-36 168.8 13.8 118 9-126 1-119 (187)
31 cd04175 Rap1 Rap1 subgroup. T 100.0 4.4E-31 9.6E-36 165.3 13.1 118 8-126 1-120 (164)
32 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.3E-31 9.2E-36 170.2 13.2 117 9-126 1-143 (202)
33 cd04176 Rap2 Rap2 subgroup. T 100.0 6.1E-31 1.3E-35 164.4 13.6 117 8-125 1-119 (163)
34 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-30 2.8E-35 162.9 14.5 116 9-125 1-117 (161)
35 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-30 2.5E-35 163.7 14.3 117 9-126 2-120 (165)
36 KOG0393 Ras-related small GTPa 100.0 9.1E-32 2E-36 170.0 9.2 121 6-126 2-123 (198)
37 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 9.8E-31 2.1E-35 168.8 14.2 116 9-125 1-123 (201)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-30 2.9E-35 165.9 14.1 115 9-125 1-117 (182)
39 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-30 2.8E-35 163.7 13.7 119 7-126 2-122 (167)
40 cd04110 Rab35 Rab35 subfamily. 100.0 2E-30 4.4E-35 167.1 14.7 121 5-126 3-124 (199)
41 cd00877 Ran Ran (Ras-related n 100.0 2.7E-30 5.8E-35 162.3 14.8 116 9-125 1-117 (166)
42 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-30 4E-35 161.6 13.5 118 8-126 1-120 (162)
43 cd04117 Rab15 Rab15 subfamily. 100.0 2.8E-30 6.1E-35 161.5 14.0 117 9-126 1-119 (161)
44 cd04135 Tc10 TC10 subfamily. 100.0 5.7E-30 1.2E-34 161.6 15.5 117 9-125 1-117 (174)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.9E-30 6.3E-35 162.8 13.8 115 10-125 2-119 (170)
46 cd04127 Rab27A Rab27a subfamil 100.0 2.6E-30 5.6E-35 164.0 13.6 120 6-126 2-134 (180)
47 cd01870 RhoA_like RhoA-like su 100.0 6.7E-30 1.4E-34 161.4 15.3 118 8-125 1-118 (175)
48 cd04140 ARHI_like ARHI subfami 100.0 3.3E-30 7.1E-35 161.6 13.7 117 9-126 2-122 (165)
49 cd04144 Ras2 Ras2 subfamily. 100.0 1.2E-30 2.7E-35 167.1 12.0 115 10-125 1-119 (190)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.3E-30 7.1E-35 161.6 13.7 118 8-126 2-121 (166)
51 cd04106 Rab23_lke Rab23-like s 100.0 3.1E-30 6.6E-35 161.0 13.4 117 9-126 1-120 (162)
52 KOG0095 GTPase Rab30, small G 100.0 4.3E-31 9.3E-36 158.7 9.0 121 5-126 4-126 (213)
53 cd01864 Rab19 Rab19 subfamily. 100.0 5.5E-30 1.2E-34 160.5 13.9 119 7-126 2-122 (165)
54 cd04116 Rab9 Rab9 subfamily. 100.0 1E-29 2.2E-34 159.9 14.6 120 5-125 2-127 (170)
55 PLN00023 GTP-binding protein; 100.0 7.2E-30 1.6E-34 172.6 14.6 121 5-126 18-165 (334)
56 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.3E-30 1.6E-34 159.5 13.5 118 8-126 2-121 (164)
57 PF00071 Ras: Ras family; Int 100.0 2.1E-30 4.5E-35 161.8 11.0 116 10-126 1-118 (162)
58 smart00173 RAS Ras subfamily o 100.0 6.3E-30 1.4E-34 159.9 13.0 117 9-126 1-119 (164)
59 cd01868 Rab11_like Rab11-like. 100.0 9.2E-30 2E-34 159.4 13.6 119 7-126 2-122 (165)
60 cd04119 RJL RJL (RabJ-Like) su 100.0 6.9E-30 1.5E-34 159.9 13.0 116 9-125 1-123 (168)
61 cd04118 Rab24 Rab24 subfamily. 100.0 1.7E-29 3.6E-34 162.0 15.0 116 9-125 1-118 (193)
62 cd01866 Rab2 Rab2 subfamily. 100.0 1.5E-29 3.3E-34 159.0 14.1 119 6-125 2-122 (168)
63 smart00176 RAN Ran (Ras-relate 100.0 7.9E-30 1.7E-34 164.3 13.0 111 14-125 1-112 (200)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.4E-29 3.1E-34 159.5 13.9 118 8-126 2-123 (170)
65 cd04143 Rhes_like Rhes_like su 100.0 8.9E-30 1.9E-34 168.7 13.4 117 9-126 1-127 (247)
66 cd04125 RabA_like RabA-like su 100.0 1.7E-29 3.7E-34 161.4 14.2 116 9-125 1-118 (188)
67 cd00157 Rho Rho (Ras homology) 100.0 3E-29 6.6E-34 157.6 14.9 118 9-126 1-118 (171)
68 cd04113 Rab4 Rab4 subfamily. 100.0 1.6E-29 3.4E-34 157.7 13.3 117 9-126 1-119 (161)
69 cd01892 Miro2 Miro2 subfamily. 100.0 3.4E-29 7.4E-34 157.8 14.8 118 6-125 2-121 (169)
70 cd04109 Rab28 Rab28 subfamily. 100.0 1.6E-29 3.5E-34 164.7 13.6 117 9-126 1-123 (215)
71 PLN03110 Rab GTPase; Provision 100.0 2.4E-29 5.3E-34 164.0 14.3 121 5-126 9-131 (216)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 6.7E-29 1.5E-33 156.1 14.0 118 8-126 1-120 (168)
73 PLN03108 Rab family protein; P 100.0 6.3E-29 1.4E-33 161.4 14.2 123 3-126 1-125 (210)
74 cd04112 Rab26 Rab26 subfamily. 100.0 6E-29 1.3E-33 159.4 13.5 116 9-125 1-119 (191)
75 cd04111 Rab39 Rab39 subfamily. 100.0 6.3E-29 1.4E-33 161.5 13.7 118 8-126 2-123 (211)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 7.1E-29 1.5E-33 155.2 13.4 117 9-126 1-121 (164)
77 cd01861 Rab6 Rab6 subfamily. 100.0 8E-29 1.7E-33 154.4 13.6 116 9-125 1-118 (161)
78 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-28 3.3E-33 157.9 15.2 116 8-125 2-133 (195)
79 cd04146 RERG_RasL11_like RERG/ 100.0 3E-29 6.5E-34 157.2 11.5 115 10-125 1-119 (165)
80 smart00175 RAB Rab subfamily o 100.0 1.1E-28 2.3E-33 154.1 13.4 117 9-126 1-119 (164)
81 cd04103 Centaurin_gamma Centau 100.0 1.1E-28 2.5E-33 153.9 13.4 110 9-125 1-112 (158)
82 cd01860 Rab5_related Rab5-rela 100.0 1.7E-28 3.8E-33 153.2 13.5 117 8-125 1-119 (163)
83 cd01893 Miro1 Miro1 subfamily. 100.0 1.7E-28 3.8E-33 154.0 13.5 117 9-126 1-117 (166)
84 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.5E-29 1.4E-33 155.8 11.5 112 11-126 2-113 (164)
85 cd01862 Rab7 Rab7 subfamily. 100.0 1.8E-28 3.8E-33 154.3 13.5 116 9-125 1-122 (172)
86 cd01863 Rab18 Rab18 subfamily. 100.0 3.3E-28 7.1E-33 151.7 14.4 116 9-125 1-119 (161)
87 cd04142 RRP22 RRP22 subfamily. 100.0 3.7E-28 8E-33 156.5 14.5 117 9-126 1-130 (198)
88 KOG0395 Ras-related GTPase [Ge 100.0 9E-29 2E-33 158.6 11.0 119 7-126 2-122 (196)
89 cd04126 Rab20 Rab20 subfamily. 100.0 3E-28 6.4E-33 158.9 13.4 113 9-126 1-114 (220)
90 cd04129 Rho2 Rho2 subfamily. 100.0 7E-28 1.5E-32 154.0 14.8 118 8-125 1-118 (187)
91 KOG0088 GTPase Rab21, small G 100.0 2.8E-29 6.1E-34 152.1 7.6 122 4-126 9-132 (218)
92 cd04149 Arf6 Arf6 subfamily. 100.0 2.6E-28 5.5E-33 153.6 10.9 116 6-125 7-123 (168)
93 cd04123 Rab21 Rab21 subfamily. 100.0 1.2E-27 2.6E-32 148.9 13.8 117 9-126 1-119 (162)
94 PLN00223 ADP-ribosylation fact 100.0 3.6E-28 7.7E-33 154.7 11.4 116 6-126 15-132 (181)
95 smart00177 ARF ARF-like small 100.0 3.8E-28 8.3E-33 153.7 11.5 116 6-126 11-128 (175)
96 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.3E-28 9.4E-33 151.3 11.2 113 9-126 1-115 (159)
97 PTZ00132 GTP-binding nuclear p 100.0 2.2E-27 4.8E-32 154.6 14.9 122 3-125 4-126 (215)
98 cd04114 Rab30 Rab30 subfamily. 100.0 2.6E-27 5.6E-32 148.7 14.7 121 5-126 4-126 (169)
99 PLN03118 Rab family protein; P 100.0 2.6E-27 5.7E-32 153.9 14.7 120 5-125 11-133 (211)
100 cd04139 RalA_RalB RalA/RalB su 100.0 3E-27 6.4E-32 147.5 13.2 117 9-126 1-119 (164)
101 cd04147 Ras_dva Ras-dva subfam 100.0 2.4E-27 5.2E-32 152.7 13.1 116 10-126 1-118 (198)
102 PTZ00133 ADP-ribosylation fact 100.0 1.1E-27 2.5E-32 152.5 11.3 117 6-126 15-132 (182)
103 cd04148 RGK RGK subfamily. Th 100.0 3.5E-27 7.7E-32 154.2 13.9 115 9-126 1-120 (221)
104 cd00154 Rab Rab family. Rab G 100.0 4.4E-27 9.6E-32 145.5 13.1 116 9-125 1-118 (159)
105 cd04161 Arl2l1_Arl13_like Arl2 100.0 2E-27 4.3E-32 149.4 10.8 112 10-126 1-114 (167)
106 PF08477 Miro: Miro-like prote 100.0 4.5E-27 9.7E-32 140.1 11.8 114 10-123 1-119 (119)
107 KOG0091 GTPase Rab39, small G 100.0 4.4E-28 9.6E-33 147.5 7.4 120 6-126 6-130 (213)
108 cd00876 Ras Ras family. The R 99.9 4.9E-27 1.1E-31 145.9 12.1 116 10-126 1-118 (160)
109 cd04158 ARD1 ARD1 subfamily. 99.9 6.1E-27 1.3E-31 147.4 11.3 112 10-126 1-114 (169)
110 cd04137 RheB Rheb (Ras Homolog 99.9 1.2E-26 2.5E-31 147.3 12.4 116 9-125 2-119 (180)
111 KOG0081 GTPase Rab27, small G 99.9 6.2E-29 1.3E-33 150.7 0.8 121 5-126 6-138 (219)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2E-26 4.4E-31 146.8 12.4 117 7-125 2-122 (183)
113 cd04154 Arl2 Arl2 subfamily. 99.9 2.6E-26 5.7E-31 144.9 12.3 116 6-126 12-129 (173)
114 KOG0097 GTPase Rab14, small G 99.9 5.8E-27 1.3E-31 140.0 8.2 121 5-126 8-130 (215)
115 cd04157 Arl6 Arl6 subfamily. 99.9 1.6E-26 3.5E-31 144.1 10.2 113 10-126 1-118 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7.5E-26 1.6E-30 143.1 11.6 115 7-126 14-130 (174)
117 COG1100 GTPase SAR1 and relate 99.9 1.1E-25 2.5E-30 146.7 12.4 119 8-126 5-125 (219)
118 cd04151 Arl1 Arl1 subfamily. 99.9 7.2E-26 1.6E-30 141.0 10.9 113 10-126 1-114 (158)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.3E-25 2.9E-30 139.8 11.7 112 10-125 1-114 (160)
120 KOG4252 GTP-binding protein [S 99.9 1.2E-27 2.5E-32 147.8 1.3 121 5-126 17-138 (246)
121 PF00025 Arf: ADP-ribosylation 99.9 6.8E-25 1.5E-29 138.9 11.4 118 5-126 11-129 (175)
122 smart00178 SAR Sar1p-like memb 99.9 1.1E-24 2.3E-29 139.0 12.0 116 6-126 15-132 (184)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 7.2E-25 1.6E-29 136.3 10.8 112 10-126 1-114 (158)
124 cd00879 Sar1 Sar1 subfamily. 99.9 1.9E-24 4E-29 138.2 12.6 116 6-126 17-134 (190)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.1E-24 2.3E-29 136.6 11.2 113 10-126 1-121 (167)
126 KOG0083 GTPase Rab26/Rab37, sm 99.9 6.4E-27 1.4E-31 138.4 0.8 113 13-126 2-117 (192)
127 cd04159 Arl10_like Arl10-like 99.9 2E-24 4.4E-29 133.6 11.9 112 11-126 2-115 (159)
128 KOG0073 GTP-binding ADP-ribosy 99.9 3.8E-24 8.2E-29 130.2 11.2 117 5-125 13-130 (185)
129 KOG0070 GTP-binding ADP-ribosy 99.9 4.3E-24 9.2E-29 132.5 9.2 118 5-126 14-132 (181)
130 cd04105 SR_beta Signal recogni 99.9 1.2E-23 2.6E-28 136.0 10.6 116 10-126 2-123 (203)
131 TIGR00231 small_GTP small GTP- 99.9 3.8E-23 8.2E-28 127.4 12.1 119 8-126 1-122 (161)
132 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.4E-23 3.1E-28 130.5 10.0 126 1-127 1-129 (216)
133 cd01890 LepA LepA subfamily. 99.9 1.1E-22 2.4E-27 128.8 9.9 112 10-125 2-132 (179)
134 cd04155 Arl3 Arl3 subfamily. 99.9 4.1E-22 8.9E-27 125.5 12.4 117 5-126 11-129 (173)
135 KOG0075 GTP-binding ADP-ribosy 99.9 1.2E-23 2.5E-28 126.2 4.0 117 7-126 19-136 (186)
136 cd01898 Obg Obg subfamily. Th 99.9 3.2E-22 7E-27 125.6 10.3 115 10-126 2-128 (170)
137 cd01891 TypA_BipA TypA (tyrosi 99.9 2.4E-22 5.2E-27 129.1 9.2 114 8-125 2-130 (194)
138 cd01897 NOG NOG1 is a nucleola 99.9 1.4E-21 3.1E-26 122.5 12.4 116 9-126 1-127 (168)
139 KOG3883 Ras family small GTPas 99.9 1.5E-21 3.2E-26 118.0 11.4 121 6-127 7-133 (198)
140 cd01878 HflX HflX subfamily. 99.9 1.2E-21 2.6E-26 126.7 10.5 117 6-126 39-167 (204)
141 KOG0071 GTP-binding ADP-ribosy 99.9 1.5E-21 3.3E-26 116.3 10.0 117 6-126 15-132 (180)
142 cd04171 SelB SelB subfamily. 99.9 1.2E-21 2.7E-26 122.1 10.0 109 10-126 2-118 (164)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-21 3.9E-26 121.9 10.4 112 10-125 2-115 (168)
144 cd00882 Ras_like_GTPase Ras-li 99.9 3.2E-21 7E-26 117.7 11.3 113 13-126 1-116 (157)
145 PTZ00099 rab6; Provisional 99.9 7.3E-21 1.6E-25 120.5 11.2 94 31-125 3-98 (176)
146 KOG1673 Ras GTPases [General f 99.9 2.3E-21 4.9E-26 117.5 8.0 120 4-124 16-136 (205)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-20 2.2E-25 134.2 12.6 113 7-126 202-324 (442)
148 TIGR02528 EutP ethanolamine ut 99.9 1E-21 2.2E-26 120.2 6.0 95 10-125 2-101 (142)
149 TIGR03156 GTP_HflX GTP-binding 99.9 9.5E-21 2E-25 131.1 10.6 117 7-126 188-315 (351)
150 PRK03003 GTP-binding protein D 99.8 7.5E-21 1.6E-25 136.3 10.0 113 7-125 37-159 (472)
151 PRK15494 era GTPase Era; Provi 99.8 1.5E-20 3.2E-25 129.8 10.6 115 5-125 49-173 (339)
152 TIGR00436 era GTP-binding prot 99.8 4E-20 8.7E-25 124.3 9.8 110 10-126 2-121 (270)
153 TIGR03598 GTPase_YsxC ribosome 99.8 5.1E-20 1.1E-24 116.9 9.6 116 4-126 14-143 (179)
154 PRK03003 GTP-binding protein D 99.8 7.8E-20 1.7E-24 131.1 11.3 114 7-126 210-336 (472)
155 PRK04213 GTP-binding protein; 99.8 9.6E-21 2.1E-25 122.1 5.9 115 5-126 6-144 (201)
156 PRK05291 trmE tRNA modificatio 99.8 7.6E-20 1.6E-24 130.2 10.8 112 7-126 214-335 (449)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.1E-19 2.3E-24 112.4 10.2 110 9-126 2-121 (157)
158 PRK12299 obgE GTPase CgtA; Rev 99.8 9.5E-20 2.1E-24 125.3 10.7 116 9-126 159-285 (335)
159 cd01894 EngA1 EngA1 subfamily. 99.8 8.7E-20 1.9E-24 112.9 9.2 109 12-126 1-119 (157)
160 cd00881 GTP_translation_factor 99.8 9E-20 2E-24 116.0 9.4 113 10-126 1-128 (189)
161 TIGR01393 lepA GTP-binding pro 99.8 1.1E-19 2.3E-24 133.0 10.8 116 7-126 2-136 (595)
162 KOG1707 Predicted Ras related/ 99.8 5.7E-20 1.2E-24 130.6 8.8 122 4-126 5-129 (625)
163 cd01881 Obg_like The Obg-like 99.8 2.4E-19 5.2E-24 113.0 10.5 112 13-126 1-134 (176)
164 cd01879 FeoB Ferrous iron tran 99.8 2.3E-19 5.1E-24 111.2 10.1 106 13-126 1-115 (158)
165 cd01895 EngA2 EngA2 subfamily. 99.8 4.5E-19 9.7E-24 111.1 11.2 113 8-126 2-127 (174)
166 PRK00093 GTP-binding protein D 99.8 2.2E-19 4.8E-24 127.7 10.8 111 9-125 2-122 (435)
167 cd04167 Snu114p Snu114p subfam 99.8 1.4E-19 2.9E-24 117.9 8.1 112 10-125 2-136 (213)
168 TIGR03594 GTPase_EngA ribosome 99.8 9.7E-19 2.1E-23 124.2 12.7 114 6-125 170-296 (429)
169 PRK11058 GTPase HflX; Provisio 99.8 4.9E-19 1.1E-23 125.1 10.6 115 9-125 198-322 (426)
170 KOG0074 GTP-binding ADP-ribosy 99.8 8.2E-19 1.8E-23 104.9 9.6 119 4-125 13-132 (185)
171 cd04163 Era Era subfamily. Er 99.8 7.5E-19 1.6E-23 109.3 9.9 114 8-125 3-124 (168)
172 TIGR02729 Obg_CgtA Obg family 99.8 6.9E-19 1.5E-23 120.9 10.4 117 8-126 157-287 (329)
173 TIGR00487 IF-2 translation ini 99.8 1.1E-18 2.3E-23 127.4 11.9 115 6-125 85-200 (587)
174 cd04168 TetM_like Tet(M)-like 99.8 3E-19 6.4E-24 117.9 8.1 113 10-126 1-130 (237)
175 TIGR03594 GTPase_EngA ribosome 99.8 5E-19 1.1E-23 125.7 9.1 111 10-126 1-121 (429)
176 CHL00189 infB translation init 99.8 8.5E-19 1.8E-23 130.0 10.3 117 6-126 242-361 (742)
177 PRK00454 engB GTP-binding prot 99.8 1.3E-18 2.9E-23 111.5 9.7 116 5-126 21-149 (196)
178 cd04169 RF3 RF3 subfamily. Pe 99.8 2.1E-18 4.6E-23 115.6 10.4 115 8-126 2-137 (267)
179 PRK00089 era GTPase Era; Revie 99.8 2.5E-18 5.4E-23 116.7 10.5 114 7-125 4-126 (292)
180 PRK05306 infB translation init 99.8 5.2E-18 1.1E-22 126.7 12.3 115 6-126 288-403 (787)
181 PF09439 SRPRB: Signal recogni 99.8 2.2E-19 4.8E-24 113.2 4.3 118 7-126 2-126 (181)
182 cd01889 SelB_euk SelB subfamil 99.8 2.2E-18 4.7E-23 110.5 8.8 113 9-125 1-133 (192)
183 COG2229 Predicted GTPase [Gene 99.8 5.6E-18 1.2E-22 105.4 10.1 118 4-126 6-135 (187)
184 PRK12297 obgE GTPase CgtA; Rev 99.8 6.1E-18 1.3E-22 119.3 11.1 115 9-125 159-287 (424)
185 PRK09518 bifunctional cytidyla 99.8 4.8E-18 1E-22 126.9 11.0 114 7-126 449-575 (712)
186 PRK09518 bifunctional cytidyla 99.8 4.6E-18 9.9E-23 127.0 10.2 114 7-126 274-397 (712)
187 PRK05433 GTP-binding protein L 99.8 6.1E-18 1.3E-22 124.0 10.1 118 5-126 4-140 (600)
188 COG1159 Era GTPase [General fu 99.8 9.5E-18 2.1E-22 111.6 10.1 118 5-127 3-129 (298)
189 cd01885 EF2 EF2 (for archaea a 99.8 1.2E-17 2.7E-22 109.1 10.3 112 10-125 2-138 (222)
190 TIGR00491 aIF-2 translation in 99.8 1.2E-17 2.5E-22 122.0 10.6 112 7-125 3-134 (590)
191 PRK10218 GTP-binding protein; 99.8 1.7E-17 3.7E-22 121.5 11.5 116 7-126 4-134 (607)
192 cd00880 Era_like Era (E. coli 99.8 1.7E-17 3.6E-22 102.2 9.9 109 13-126 1-118 (163)
193 KOG0076 GTP-binding ADP-ribosy 99.8 7.2E-19 1.6E-23 108.3 3.6 119 5-126 14-140 (197)
194 PRK00093 GTP-binding protein D 99.8 1.7E-17 3.7E-22 118.1 11.1 114 6-125 171-297 (435)
195 KOG0077 Vesicle coat complex C 99.7 4.4E-18 9.5E-23 104.2 6.8 118 6-127 18-136 (193)
196 cd04104 p47_IIGP_like p47 (47- 99.7 8.6E-18 1.9E-22 108.3 8.5 112 8-125 1-120 (197)
197 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 6.8E-18 1.5E-22 110.6 8.0 114 10-126 1-125 (232)
198 TIGR00475 selB selenocysteine- 99.7 2.2E-17 4.7E-22 120.8 11.0 112 9-126 1-117 (581)
199 KOG4423 GTP-binding protein-li 99.7 8.4E-21 1.8E-25 118.0 -5.7 120 6-126 23-149 (229)
200 cd01850 CDC_Septin CDC/Septin. 99.7 7.4E-17 1.6E-21 108.7 12.7 116 7-126 3-157 (276)
201 PF02421 FeoB_N: Ferrous iron 99.7 1.8E-17 3.9E-22 102.5 8.8 108 9-124 1-117 (156)
202 PRK12298 obgE GTPase CgtA; Rev 99.7 2.1E-17 4.6E-22 115.8 10.2 116 9-126 160-289 (390)
203 PRK15467 ethanolamine utilizat 99.7 8.3E-18 1.8E-22 104.9 6.4 98 10-126 3-105 (158)
204 PRK12317 elongation factor 1-a 99.7 3.8E-17 8.2E-22 116.0 10.0 122 3-125 1-152 (425)
205 PF00009 GTP_EFTU: Elongation 99.7 1.3E-17 2.8E-22 106.7 6.8 115 7-125 2-135 (188)
206 COG1160 Predicted GTPases [Gen 99.7 4.9E-17 1.1E-21 113.5 8.8 111 9-125 4-125 (444)
207 PRK12296 obgE GTPase CgtA; Rev 99.7 7.2E-17 1.5E-21 115.4 9.9 116 8-126 159-298 (500)
208 TIGR00483 EF-1_alpha translati 99.7 6.1E-17 1.3E-21 115.0 9.4 119 5-125 4-154 (426)
209 PRK00741 prfC peptide chain re 99.7 4.5E-17 9.7E-22 117.8 8.5 119 4-126 6-145 (526)
210 KOG0072 GTP-binding ADP-ribosy 99.7 1E-17 2.2E-22 100.5 4.3 117 5-125 15-132 (182)
211 PF01926 MMR_HSR1: 50S ribosom 99.7 6.6E-17 1.4E-21 95.9 7.8 105 10-121 1-116 (116)
212 TIGR01394 TypA_BipA GTP-bindin 99.7 9.2E-17 2E-21 117.6 9.9 114 9-126 2-130 (594)
213 cd04170 EF-G_bact Elongation f 99.7 8.1E-17 1.8E-21 108.2 8.8 113 10-126 1-130 (268)
214 cd01886 EF-G Elongation factor 99.7 1.3E-16 2.7E-21 107.2 9.4 113 10-126 1-130 (270)
215 PRK04004 translation initiatio 99.7 2.3E-16 5E-21 115.4 11.6 113 6-125 4-136 (586)
216 TIGR00503 prfC peptide chain r 99.7 1.3E-16 2.8E-21 115.5 10.1 118 4-125 7-145 (527)
217 cd01896 DRG The developmentall 99.7 8.9E-16 1.9E-20 101.2 13.2 82 10-93 2-91 (233)
218 cd04166 CysN_ATPS CysN_ATPS su 99.7 9.3E-17 2E-21 104.3 7.9 113 10-125 1-143 (208)
219 PRK09554 feoB ferrous iron tra 99.7 6.3E-16 1.4E-20 115.9 12.7 111 8-125 3-125 (772)
220 PRK13351 elongation factor G; 99.7 7.8E-17 1.7E-21 120.2 7.8 115 5-126 5-139 (687)
221 cd01876 YihA_EngB The YihA (En 99.7 2E-16 4.4E-21 98.5 8.5 109 10-125 1-123 (170)
222 COG0486 ThdF Predicted GTPase 99.7 3.9E-16 8.5E-21 109.3 10.6 113 7-126 216-338 (454)
223 cd01888 eIF2_gamma eIF2-gamma 99.7 4.7E-16 1E-20 100.6 8.7 116 9-126 1-151 (203)
224 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.2E-15 2.6E-20 98.1 9.5 114 8-125 2-131 (195)
225 TIGR00437 feoB ferrous iron tr 99.7 1.1E-15 2.3E-20 112.2 10.1 103 15-125 1-112 (591)
226 TIGR00484 EF-G translation elo 99.7 1.2E-15 2.6E-20 113.9 10.5 118 5-126 7-141 (689)
227 KOG1423 Ras-like GTPase ERA [C 99.6 1.6E-15 3.4E-20 101.5 7.5 119 4-125 68-198 (379)
228 cd01883 EF1_alpha Eukaryotic e 99.6 2E-15 4.3E-20 98.8 7.7 113 10-125 1-150 (219)
229 TIGR00490 aEF-2 translation el 99.6 2E-15 4.3E-20 113.0 8.4 117 5-125 16-151 (720)
230 cd04165 GTPBP1_like GTPBP1-lik 99.6 4E-15 8.6E-20 97.6 8.3 112 10-125 1-151 (224)
231 COG0218 Predicted GTPase [Gene 99.6 7.3E-15 1.6E-19 93.2 9.0 114 6-126 22-149 (200)
232 cd00066 G-alpha G protein alph 99.6 4.7E-15 1E-19 101.7 8.8 71 55-125 160-241 (317)
233 PRK10512 selenocysteinyl-tRNA- 99.6 9.1E-15 2E-19 107.6 10.6 111 10-126 2-118 (614)
234 PRK12735 elongation factor Tu; 99.6 1.2E-14 2.6E-19 102.4 10.3 117 5-125 9-141 (396)
235 TIGR00485 EF-Tu translation el 99.6 1.1E-14 2.3E-19 102.7 9.7 117 5-126 9-142 (394)
236 CHL00071 tufA elongation facto 99.6 1.5E-14 3.2E-19 102.4 10.4 117 5-126 9-142 (409)
237 PRK12736 elongation factor Tu; 99.6 1.2E-14 2.7E-19 102.3 9.9 117 5-125 9-141 (394)
238 PLN03126 Elongation factor Tu; 99.6 1.2E-14 2.7E-19 104.2 9.6 118 5-126 78-211 (478)
239 TIGR03680 eif2g_arch translati 99.6 5.5E-15 1.2E-19 104.5 7.7 118 6-126 2-148 (406)
240 COG3596 Predicted GTPase [Gene 99.6 2.5E-15 5.5E-20 99.2 5.1 118 6-127 37-163 (296)
241 PRK12739 elongation factor G; 99.6 1.2E-14 2.6E-19 108.6 9.3 116 5-126 5-139 (691)
242 cd01853 Toc34_like Toc34-like 99.6 2.8E-14 6.1E-19 94.8 10.0 121 4-127 27-164 (249)
243 TIGR00991 3a0901s02IAP34 GTP-b 99.6 5.7E-14 1.2E-18 95.2 10.9 120 4-126 34-167 (313)
244 COG1160 Predicted GTPases [Gen 99.6 4.8E-14 1E-18 98.7 10.6 114 7-126 177-303 (444)
245 PRK04000 translation initiatio 99.6 2.5E-14 5.4E-19 101.2 9.0 121 3-126 4-153 (411)
246 smart00010 small_GTPase Small 99.5 6.4E-14 1.4E-18 83.5 8.8 88 9-125 1-90 (124)
247 KOG0090 Signal recognition par 99.5 1.2E-14 2.7E-19 92.6 5.8 114 8-125 38-158 (238)
248 smart00275 G_alpha G protein a 99.5 2.9E-14 6.3E-19 98.7 8.0 71 55-125 183-264 (342)
249 PRK00007 elongation factor G; 99.5 6.1E-14 1.3E-18 104.8 10.0 116 5-126 7-141 (693)
250 COG1084 Predicted GTPase [Gene 99.5 1.9E-13 4.1E-18 92.3 11.3 118 6-126 166-294 (346)
251 PRK00049 elongation factor Tu; 99.5 1.2E-13 2.5E-18 97.5 10.8 116 5-125 9-141 (396)
252 PLN03127 Elongation factor Tu; 99.5 1.8E-13 3.9E-18 97.7 10.9 116 5-125 58-190 (447)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2E-13 4.4E-18 87.9 9.7 112 9-125 1-129 (196)
254 PLN00116 translation elongatio 99.5 1E-13 2.2E-18 105.4 8.3 118 4-125 15-163 (843)
255 PRK05124 cysN sulfate adenylyl 99.5 2.5E-13 5.5E-18 97.6 9.5 118 5-125 24-173 (474)
256 PTZ00416 elongation factor 2; 99.5 1.9E-13 4.2E-18 103.8 9.2 117 5-125 16-157 (836)
257 TIGR02034 CysN sulfate adenyly 99.5 1.5E-13 3.2E-18 97.2 7.5 114 9-125 1-146 (406)
258 PRK05506 bifunctional sulfate 99.5 2.2E-13 4.8E-18 101.0 8.4 118 5-125 21-170 (632)
259 KOG1191 Mitochondrial GTPase [ 99.4 5.7E-13 1.2E-17 93.9 8.3 119 6-127 266-404 (531)
260 COG0370 FeoB Fe2+ transport sy 99.4 8.6E-13 1.9E-17 96.2 9.5 111 7-125 2-121 (653)
261 KOG3886 GTP-binding protein [S 99.4 2.8E-13 6E-18 87.6 5.9 118 7-126 3-130 (295)
262 COG2262 HflX GTPases [General 99.4 2E-12 4.4E-17 89.6 10.2 119 5-126 189-318 (411)
263 PTZ00141 elongation factor 1- 99.4 1.4E-12 3.1E-17 93.1 9.9 116 5-124 4-157 (446)
264 PLN00043 elongation factor 1-a 99.4 1.3E-12 2.9E-17 93.3 9.5 117 5-125 4-158 (447)
265 PRK12740 elongation factor G; 99.4 3.6E-13 7.8E-18 100.5 6.8 109 14-126 1-126 (668)
266 KOG0462 Elongation factor-type 99.4 2.7E-12 5.8E-17 91.7 9.9 117 6-126 58-191 (650)
267 PF10662 PduV-EutP: Ethanolami 99.4 4.2E-13 9.1E-18 81.6 5.1 97 9-125 2-102 (143)
268 KOG1707 Predicted Ras related/ 99.4 1.1E-11 2.3E-16 89.1 12.3 118 5-126 422-540 (625)
269 PRK07560 elongation factor EF- 99.4 1.6E-12 3.4E-17 97.9 8.3 117 5-125 17-152 (731)
270 COG1163 DRG Predicted GTPase [ 99.4 2.5E-11 5.4E-16 82.1 12.3 85 8-94 63-155 (365)
271 cd01882 BMS1 Bms1. Bms1 is an 99.4 7E-12 1.5E-16 82.4 9.1 109 6-125 37-146 (225)
272 KOG1489 Predicted GTP-binding 99.4 1.7E-11 3.7E-16 82.7 10.4 115 9-125 197-325 (366)
273 PF00350 Dynamin_N: Dynamin fa 99.3 4.7E-12 1E-16 79.4 6.7 63 57-122 102-168 (168)
274 PF04548 AIG1: AIG1 family; I 99.3 8.1E-12 1.8E-16 81.4 7.8 114 9-125 1-129 (212)
275 cd01899 Ygr210 Ygr210 subfamil 99.3 1.1E-11 2.3E-16 85.1 8.4 80 11-90 1-110 (318)
276 PF05049 IIGP: Interferon-indu 99.3 4.7E-12 1E-16 88.0 6.7 113 6-124 33-153 (376)
277 KOG0468 U5 snRNP-specific prot 99.3 7.4E-12 1.6E-16 91.3 7.4 117 4-124 124-261 (971)
278 PRK09602 translation-associate 99.3 2.2E-11 4.8E-16 85.8 9.4 83 8-90 1-113 (396)
279 PF00735 Septin: Septin; Inte 99.3 6.9E-11 1.5E-15 80.0 11.0 115 8-126 4-156 (281)
280 COG0481 LepA Membrane GTPase L 99.3 8.2E-12 1.8E-16 88.1 6.5 120 3-126 4-142 (603)
281 TIGR00993 3a0901s04IAP86 chlor 99.3 3.1E-11 6.6E-16 88.7 9.7 117 7-126 117-250 (763)
282 KOG0082 G-protein alpha subuni 99.3 2.5E-11 5.4E-16 83.5 8.7 69 55-124 194-274 (354)
283 COG0532 InfB Translation initi 99.2 1.8E-10 3.9E-15 82.3 10.6 117 6-126 3-121 (509)
284 smart00053 DYNc Dynamin, GTPas 99.2 1.6E-10 3.4E-15 76.5 9.4 68 56-126 125-206 (240)
285 PRK14845 translation initiatio 99.2 1.3E-10 2.9E-15 89.5 9.0 103 19-125 472-591 (1049)
286 KOG1145 Mitochondrial translat 99.2 2.6E-10 5.7E-15 81.8 9.5 114 6-126 151-267 (683)
287 COG0536 Obg Predicted GTPase [ 99.2 2.3E-10 5.1E-15 77.9 8.8 113 11-125 162-288 (369)
288 COG0480 FusA Translation elong 99.2 1.2E-10 2.5E-15 86.8 8.0 118 4-125 6-141 (697)
289 PRK09866 hypothetical protein; 99.2 1.6E-10 3.6E-15 84.7 8.6 68 56-125 230-302 (741)
290 PF05783 DLIC: Dynein light in 99.2 6.5E-10 1.4E-14 79.8 10.7 97 7-106 24-127 (472)
291 TIGR02836 spore_IV_A stage IV 99.1 6.8E-10 1.5E-14 78.0 9.9 115 7-123 16-191 (492)
292 PF00503 G-alpha: G-protein al 99.1 2.8E-10 6.1E-15 80.3 8.2 69 56-124 236-315 (389)
293 KOG3905 Dynein light intermedi 99.1 5.2E-10 1.1E-14 76.1 8.8 100 7-109 51-157 (473)
294 KOG1532 GTPase XAB1, interacts 99.1 1.2E-10 2.5E-15 77.5 5.3 26 6-31 17-42 (366)
295 PRK13768 GTPase; Provisional 99.1 1.1E-10 2.4E-15 78.0 5.0 70 57-126 98-176 (253)
296 COG5256 TEF1 Translation elong 99.1 9.1E-10 2E-14 76.7 8.8 121 5-126 4-159 (428)
297 COG4108 PrfC Peptide chain rel 99.1 3.3E-10 7.1E-15 79.5 6.5 118 5-126 9-147 (528)
298 PF03029 ATP_bind_1: Conserved 99.1 1.9E-11 4.2E-16 80.8 0.3 70 57-126 92-170 (238)
299 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 5.7E-10 1.2E-14 68.3 6.4 54 10-66 85-138 (141)
300 KOG3887 Predicted small GTPase 99.0 1E-09 2.2E-14 72.0 6.4 114 9-125 28-148 (347)
301 COG5019 CDC3 Septin family pro 99.0 4.9E-09 1.1E-13 72.2 9.6 116 6-125 21-175 (373)
302 PTZ00327 eukaryotic translatio 99.0 1.8E-09 3.8E-14 77.6 7.8 120 4-126 30-185 (460)
303 COG1217 TypA Predicted membran 99.0 2.4E-09 5.2E-14 75.8 7.9 115 8-126 5-134 (603)
304 PTZ00258 GTP-binding protein; 99.0 4.5E-09 9.7E-14 73.9 9.2 85 6-90 19-126 (390)
305 KOG1490 GTP-binding protein CR 99.0 1.6E-09 3.5E-14 77.2 6.6 121 5-127 165-296 (620)
306 KOG1954 Endocytosis/signaling 99.0 2.7E-09 5.8E-14 73.8 6.8 116 8-126 58-225 (532)
307 PRK09601 GTP-binding protein Y 98.9 3.1E-09 6.7E-14 74.0 6.9 82 9-90 3-107 (364)
308 KOG2655 Septin family protein 98.9 2E-08 4.3E-13 69.5 10.3 116 7-126 20-172 (366)
309 cd01900 YchF YchF subfamily. 98.9 1.8E-09 3.9E-14 72.7 5.1 80 11-90 1-103 (274)
310 cd04178 Nucleostemin_like Nucl 98.9 6.3E-09 1.4E-13 65.8 7.0 55 7-65 116-171 (172)
311 cd01856 YlqF YlqF. Proteins o 98.9 5.6E-09 1.2E-13 65.9 6.7 57 6-66 113-170 (171)
312 cd01858 NGP_1 NGP-1. Autoanti 98.9 6.8E-09 1.5E-13 64.6 6.9 55 7-65 101-156 (157)
313 KOG0705 GTPase-activating prot 98.9 9.2E-10 2E-14 79.1 3.2 109 6-121 28-138 (749)
314 cd01859 MJ1464 MJ1464. This f 98.9 1.2E-08 2.5E-13 63.4 6.9 55 7-65 100-155 (156)
315 KOG1547 Septin CDC10 and relat 98.8 1.8E-08 3.9E-13 66.2 7.3 114 7-124 45-196 (336)
316 TIGR03596 GTPase_YlqF ribosome 98.8 1.7E-08 3.7E-13 68.3 7.4 56 7-66 117-173 (276)
317 TIGR00157 ribosome small subun 98.8 1.1E-08 2.4E-13 68.1 6.2 57 67-126 24-81 (245)
318 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.6E-08 7.8E-13 67.1 7.9 57 7-67 120-177 (287)
319 TIGR03348 VI_IcmF type VI secr 98.8 3.4E-08 7.3E-13 78.1 8.2 111 11-125 114-256 (1169)
320 KOG1144 Translation initiation 98.8 3E-08 6.6E-13 73.7 7.4 115 6-124 473-604 (1064)
321 COG4917 EutP Ethanolamine util 98.8 5.9E-09 1.3E-13 61.7 2.5 99 9-126 2-104 (148)
322 KOG0099 G protein subunit Galp 98.7 3E-08 6.6E-13 65.9 6.0 70 55-125 201-282 (379)
323 COG2895 CysN GTPases - Sulfate 98.7 2.3E-07 5E-12 64.0 9.4 119 4-126 2-153 (431)
324 cd01855 YqeH YqeH. YqeH is an 98.7 4.6E-08 9.9E-13 62.7 5.6 55 8-65 127-189 (190)
325 KOG2486 Predicted GTPase [Gene 98.7 2.2E-08 4.8E-13 66.8 3.9 114 6-125 134-261 (320)
326 PRK09435 membrane ATPase/prote 98.7 1.4E-07 2.9E-12 65.3 7.7 61 55-126 148-208 (332)
327 COG1161 Predicted GTPases [Gen 98.7 8.7E-08 1.9E-12 66.2 6.6 56 7-66 131-187 (322)
328 cd01849 YlqF_related_GTPase Yl 98.7 1.6E-07 3.4E-12 58.3 7.0 56 6-65 98-154 (155)
329 KOG0461 Selenocysteine-specifi 98.6 1.8E-07 3.9E-12 64.5 7.4 115 6-124 5-134 (522)
330 PF03193 DUF258: Protein of un 98.6 7.2E-08 1.6E-12 60.1 4.6 58 9-69 36-100 (161)
331 KOG1486 GTP-binding protein DR 98.6 1.4E-06 3.1E-11 57.8 10.6 96 8-105 62-165 (364)
332 cd01851 GBP Guanylate-binding 98.6 2.4E-06 5.3E-11 56.2 11.5 87 5-92 4-104 (224)
333 KOG0467 Translation elongation 98.6 2.5E-07 5.5E-12 69.0 7.4 118 3-124 4-136 (887)
334 PRK12288 GTPase RsgA; Reviewed 98.6 2E-07 4.3E-12 65.0 5.9 23 11-33 208-230 (347)
335 PRK12289 GTPase RsgA; Reviewed 98.5 2.1E-07 4.5E-12 65.0 5.7 23 10-32 174-196 (352)
336 TIGR00750 lao LAO/AO transport 98.5 7.6E-07 1.6E-11 61.0 8.2 61 55-126 126-186 (300)
337 KOG0458 Elongation factor 1 al 98.5 2.3E-06 4.9E-11 62.3 10.6 118 6-126 175-329 (603)
338 KOG0448 Mitofusin 1 GTPase, in 98.5 8.8E-07 1.9E-11 65.5 8.5 117 6-126 107-275 (749)
339 KOG0085 G protein subunit Galp 98.5 2.1E-08 4.5E-13 65.6 -0.0 71 54-125 197-279 (359)
340 COG0012 Predicted GTPase, prob 98.5 8.4E-07 1.8E-11 61.6 7.6 83 8-90 2-108 (372)
341 COG1618 Predicted nucleotide k 98.5 6.9E-06 1.5E-10 51.0 10.5 56 7-64 4-59 (179)
342 TIGR00092 GTP-binding protein 98.5 9E-07 2E-11 61.9 7.0 82 9-90 3-108 (368)
343 TIGR00157 ribosome small subun 98.4 5.6E-07 1.2E-11 60.0 5.7 24 9-32 121-144 (245)
344 cd03112 CobW_like The function 98.4 1.1E-06 2.4E-11 54.9 6.4 64 56-124 87-158 (158)
345 COG0050 TufB GTPases - transla 98.4 6.1E-07 1.3E-11 60.7 5.3 118 5-126 9-142 (394)
346 TIGR03597 GTPase_YqeH ribosome 98.4 6.3E-07 1.4E-11 62.9 5.4 24 9-32 155-178 (360)
347 COG1162 Predicted GTPases [Gen 98.4 6E-07 1.3E-11 60.9 4.8 57 10-69 166-229 (301)
348 KOG0410 Predicted GTP binding 98.4 8.2E-07 1.8E-11 60.8 5.2 118 5-126 175-308 (410)
349 cd01854 YjeQ_engC YjeQ/EngC. 98.4 7.3E-07 1.6E-11 60.8 4.8 59 9-70 162-227 (287)
350 PRK00098 GTPase RsgA; Reviewed 98.4 1.4E-06 3E-11 59.7 6.0 25 9-33 165-189 (298)
351 COG5192 BMS1 GTP-binding prote 98.3 2.9E-06 6.4E-11 62.1 7.5 110 5-125 66-176 (1077)
352 KOG1491 Predicted GTP-binding 98.3 4.2E-06 9E-11 57.6 7.3 84 7-90 19-125 (391)
353 PRK13796 GTPase YqeH; Provisio 98.3 2E-06 4.4E-11 60.5 5.9 56 8-66 160-220 (365)
354 KOG1143 Predicted translation 98.2 3.5E-06 7.6E-11 58.9 5.2 117 7-127 166-318 (591)
355 PF06858 NOG1: Nucleolar GTP-b 98.2 9.1E-06 2E-10 41.7 5.2 44 79-123 13-58 (58)
356 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 8.9E-11 57.1 4.9 50 74-126 73-123 (287)
357 TIGR01425 SRP54_euk signal rec 98.1 7E-06 1.5E-10 58.7 5.8 65 55-125 182-252 (429)
358 KOG0469 Elongation factor 2 [T 98.1 7.8E-06 1.7E-10 59.2 5.6 115 6-124 17-162 (842)
359 COG3523 IcmF Type VI protein s 98.1 1.4E-05 3E-10 63.1 7.3 112 11-126 128-270 (1188)
360 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 3.9E-06 8.4E-11 51.3 3.5 49 76-126 8-56 (141)
361 KOG3859 Septins (P-loop GTPase 98.1 3.5E-05 7.5E-10 52.1 7.9 60 7-66 41-105 (406)
362 PRK00098 GTPase RsgA; Reviewed 98.1 7.4E-06 1.6E-10 56.2 4.9 48 76-125 77-124 (298)
363 PRK12289 GTPase RsgA; Reviewed 98.1 1.1E-05 2.3E-10 56.6 5.5 51 73-126 83-134 (352)
364 KOG0447 Dynamin-like GTP bindi 98.0 4.7E-05 1E-09 55.9 8.5 69 56-126 412-493 (980)
365 cd01858 NGP_1 NGP-1. Autoanti 98.0 7.2E-06 1.6E-10 51.0 3.9 48 76-125 5-52 (157)
366 cd00009 AAA The AAA+ (ATPases 98.0 3.4E-05 7.4E-10 46.4 6.9 26 8-33 19-44 (151)
367 KOG0465 Mitochondrial elongati 98.0 6.6E-06 1.4E-10 60.4 4.1 115 7-125 38-169 (721)
368 cd01855 YqeH YqeH. YqeH is an 98.0 4.6E-06 1E-10 53.4 2.6 51 69-125 24-74 (190)
369 PRK08118 topology modulation p 98.0 6.7E-06 1.4E-10 51.8 3.1 23 9-31 2-24 (167)
370 PF13207 AAA_17: AAA domain; P 98.0 6.7E-06 1.5E-10 48.7 2.8 22 10-31 1-22 (121)
371 cd01859 MJ1464 MJ1464. This f 98.0 3.7E-06 8.1E-11 52.1 1.6 51 71-125 4-54 (156)
372 cd02038 FleN-like FleN is a me 97.9 4.9E-05 1.1E-09 46.4 6.1 106 12-124 4-109 (139)
373 COG0563 Adk Adenylate kinase a 97.9 1E-05 2.2E-10 51.5 3.1 23 9-31 1-23 (178)
374 PRK07261 topology modulation p 97.9 1.1E-05 2.4E-10 51.0 3.1 22 10-31 2-23 (171)
375 PRK14737 gmk guanylate kinase; 97.9 1.9E-05 4.1E-10 50.6 4.2 24 8-31 4-27 (186)
376 PRK14738 gmk guanylate kinase; 97.9 2.3E-05 5E-10 51.0 4.6 27 5-31 10-36 (206)
377 TIGR00064 ftsY signal recognit 97.9 2.6E-05 5.6E-10 52.9 5.0 64 55-125 154-230 (272)
378 KOG0464 Elongation factor G [T 97.9 1.5E-06 3.3E-11 61.5 -1.1 114 7-124 36-166 (753)
379 KOG4273 Uncharacterized conser 97.9 0.00011 2.3E-09 49.1 7.1 114 8-125 4-122 (418)
380 KOG1424 Predicted GTP-binding 97.9 2.8E-05 6.1E-10 56.2 4.7 55 8-66 314-369 (562)
381 COG1116 TauB ABC-type nitrate/ 97.8 1.7E-05 3.7E-10 52.5 3.0 21 11-31 32-52 (248)
382 COG0194 Gmk Guanylate kinase [ 97.8 1.6E-05 3.4E-10 50.5 2.7 25 8-32 4-28 (191)
383 PF13671 AAA_33: AAA domain; P 97.8 1.7E-05 3.7E-10 48.2 2.7 20 11-30 2-21 (143)
384 KOG1487 GTP-binding protein DR 97.8 0.00015 3.3E-09 48.6 7.2 96 9-106 60-163 (358)
385 PRK12727 flagellar biosynthesi 97.8 5E-05 1.1E-09 55.7 5.4 23 8-30 350-372 (559)
386 PF03266 NTPase_1: NTPase; In 97.8 4.9E-05 1.1E-09 48.0 4.7 52 10-63 1-52 (168)
387 TIGR00235 udk uridine kinase. 97.8 3E-05 6.6E-10 50.4 3.9 28 3-30 1-28 (207)
388 COG1136 SalX ABC-type antimicr 97.8 2E-05 4.3E-10 51.8 2.9 22 10-31 33-54 (226)
389 cd02042 ParA ParA and ParB of 97.8 0.00018 3.9E-09 41.5 6.6 82 11-104 2-84 (104)
390 COG1126 GlnQ ABC-type polar am 97.8 2.5E-05 5.4E-10 50.9 3.1 23 9-31 29-51 (240)
391 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00025 5.3E-09 39.8 7.0 69 11-92 2-71 (99)
392 PF13555 AAA_29: P-loop contai 97.8 3.7E-05 8E-10 40.3 3.0 21 10-30 25-45 (62)
393 PF13521 AAA_28: AAA domain; P 97.8 2.1E-05 4.5E-10 49.2 2.5 22 10-31 1-22 (163)
394 PRK12288 GTPase RsgA; Reviewed 97.8 7.6E-05 1.6E-09 52.3 5.5 47 77-126 118-164 (347)
395 TIGR03597 GTPase_YqeH ribosome 97.7 1.8E-05 3.9E-10 55.7 2.3 54 66-125 50-103 (360)
396 PRK00771 signal recognition pa 97.7 0.00011 2.5E-09 52.8 6.2 23 7-29 94-116 (437)
397 PF09547 Spore_IV_A: Stage IV 97.7 0.0022 4.8E-08 46.0 12.2 113 9-123 18-191 (492)
398 PRK10751 molybdopterin-guanine 97.7 5.1E-05 1.1E-09 48.0 3.7 26 6-31 4-29 (173)
399 COG3276 SelB Selenocysteine-sp 97.7 0.00023 5E-09 50.7 7.2 110 11-126 3-117 (447)
400 PF00004 AAA: ATPase family as 97.7 3.9E-05 8.5E-10 45.8 3.0 21 11-31 1-21 (132)
401 PF05621 TniB: Bacterial TniB 97.7 0.00012 2.5E-09 50.1 5.4 103 5-121 58-189 (302)
402 cd02019 NK Nucleoside/nucleoti 97.7 4.8E-05 1.1E-09 40.8 3.0 21 11-31 2-22 (69)
403 PRK06217 hypothetical protein; 97.7 4.4E-05 9.6E-10 48.7 3.2 23 9-31 2-24 (183)
404 KOG2484 GTPase [General functi 97.7 5.8E-05 1.3E-09 53.1 4.0 57 6-66 250-307 (435)
405 PF04665 Pox_A32: Poxvirus A32 97.7 4.7E-05 1E-09 50.6 3.2 26 6-31 11-36 (241)
406 COG3640 CooC CO dehydrogenase 97.7 0.00084 1.8E-08 44.4 8.9 48 75-125 151-198 (255)
407 cd00071 GMPK Guanosine monopho 97.7 4.9E-05 1.1E-09 46.3 3.0 21 11-31 2-22 (137)
408 COG3839 MalK ABC-type sugar tr 97.6 4.5E-05 9.6E-10 53.0 3.0 21 11-31 32-52 (338)
409 COG1419 FlhF Flagellar GTP-bin 97.6 0.00011 2.3E-09 52.0 4.8 22 8-29 203-224 (407)
410 KOG0460 Mitochondrial translat 97.6 0.00022 4.7E-09 49.6 6.2 117 6-125 52-183 (449)
411 PRK07429 phosphoribulokinase; 97.6 7.7E-05 1.7E-09 51.8 4.1 30 1-30 1-30 (327)
412 PF00005 ABC_tran: ABC transpo 97.6 4.9E-05 1.1E-09 46.0 2.8 23 9-31 12-34 (137)
413 PRK10078 ribose 1,5-bisphospho 97.6 5.8E-05 1.3E-09 48.2 3.3 22 10-31 4-25 (186)
414 TIGR03263 guanyl_kin guanylate 97.6 0.00012 2.6E-09 46.3 4.7 22 10-31 3-24 (180)
415 smart00382 AAA ATPases associa 97.6 6.6E-05 1.4E-09 44.8 3.3 27 9-35 3-29 (148)
416 TIGR02322 phosphon_PhnN phosph 97.6 5.4E-05 1.2E-09 47.9 3.0 22 10-31 3-24 (179)
417 TIGR00101 ureG urease accessor 97.6 6.4E-05 1.4E-09 48.7 3.3 24 8-31 1-24 (199)
418 PRK14530 adenylate kinase; Pro 97.6 5.8E-05 1.2E-09 49.4 3.1 22 9-30 4-25 (215)
419 PTZ00088 adenylate kinase 1; P 97.6 6.9E-05 1.5E-09 49.6 3.5 24 7-30 5-28 (229)
420 COG1120 FepC ABC-type cobalami 97.6 6.4E-05 1.4E-09 50.4 3.0 21 10-30 30-50 (258)
421 KOG2485 Conserved ATP/GTP bind 97.6 0.00021 4.6E-09 48.9 5.5 60 6-66 141-206 (335)
422 PRK05480 uridine/cytidine kina 97.6 9.6E-05 2.1E-09 48.0 3.8 25 6-30 4-28 (209)
423 cd00820 PEPCK_HprK Phosphoenol 97.6 7.1E-05 1.5E-09 43.7 2.8 21 9-29 16-36 (107)
424 COG5258 GTPBP1 GTPase [General 97.6 0.00039 8.5E-09 49.1 6.8 118 5-126 114-269 (527)
425 PRK14723 flhF flagellar biosyn 97.6 0.00027 6E-09 53.9 6.5 22 9-30 186-207 (767)
426 PRK03839 putative kinase; Prov 97.6 7.7E-05 1.7E-09 47.4 3.1 22 10-31 2-23 (180)
427 PF07728 AAA_5: AAA domain (dy 97.6 6.9E-05 1.5E-09 45.5 2.8 22 10-31 1-22 (139)
428 COG1703 ArgK Putative periplas 97.6 0.00038 8.3E-09 47.5 6.4 23 7-29 50-72 (323)
429 cd03238 ABC_UvrA The excision 97.5 9.3E-05 2E-09 47.0 3.3 22 8-29 21-42 (176)
430 TIGR01360 aden_kin_iso1 adenyl 97.5 8.2E-05 1.8E-09 47.3 3.0 21 9-29 4-24 (188)
431 PF13238 AAA_18: AAA domain; P 97.5 7.4E-05 1.6E-09 44.4 2.6 21 11-31 1-21 (129)
432 PRK14532 adenylate kinase; Pro 97.5 8.9E-05 1.9E-09 47.4 3.1 21 10-30 2-22 (188)
433 PRK14531 adenylate kinase; Pro 97.5 9.5E-05 2.1E-09 47.2 3.2 23 8-30 2-24 (183)
434 COG3840 ThiQ ABC-type thiamine 97.5 9.6E-05 2.1E-09 47.2 3.0 22 9-30 26-47 (231)
435 cd03111 CpaE_like This protein 97.5 0.00042 9.1E-09 40.3 5.6 98 15-121 7-106 (106)
436 COG4525 TauB ABC-type taurine 97.5 9E-05 1.9E-09 47.9 2.9 21 10-30 33-53 (259)
437 PRK08233 hypothetical protein; 97.5 0.00012 2.6E-09 46.3 3.4 24 8-31 3-26 (182)
438 PRK13949 shikimate kinase; Pro 97.5 0.00011 2.4E-09 46.4 3.1 21 10-30 3-23 (169)
439 PRK02496 adk adenylate kinase; 97.5 0.00011 2.5E-09 46.7 3.3 22 9-30 2-23 (184)
440 PRK00300 gmk guanylate kinase; 97.5 0.00011 2.3E-09 47.6 3.0 24 8-31 5-28 (205)
441 COG3842 PotA ABC-type spermidi 97.5 0.0001 2.2E-09 51.6 3.0 21 11-31 34-54 (352)
442 cd02023 UMPK Uridine monophosp 97.5 0.00011 2.4E-09 47.4 2.9 20 11-30 2-21 (198)
443 COG1117 PstB ABC-type phosphat 97.5 0.00013 2.9E-09 47.6 3.3 21 8-28 33-53 (253)
444 COG0378 HypB Ni2+-binding GTPa 97.5 0.00011 2.4E-09 47.1 2.8 25 6-30 11-35 (202)
445 cd01428 ADK Adenylate kinase ( 97.5 0.0001 2.2E-09 47.2 2.7 22 10-31 1-22 (194)
446 COG5257 GCD11 Translation init 97.5 0.00056 1.2E-08 47.3 6.3 119 6-126 8-154 (415)
447 PF13401 AAA_22: AAA domain; P 97.5 0.0001 2.2E-09 44.1 2.5 23 9-31 5-27 (131)
448 KOG3929 Uncharacterized conser 97.5 5.6E-05 1.2E-09 50.6 1.4 92 7-102 44-142 (363)
449 cd01131 PilT Pilus retraction 97.5 0.00045 9.8E-09 44.7 5.6 22 11-32 4-25 (198)
450 PLN02674 adenylate kinase 97.4 0.00012 2.6E-09 48.8 2.9 25 6-30 29-53 (244)
451 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00012 2.7E-09 46.4 2.9 20 11-30 2-21 (183)
452 PLN03025 replication factor C 97.4 0.0005 1.1E-08 47.6 6.0 25 9-33 35-59 (319)
453 PRK06547 hypothetical protein; 97.4 0.00018 3.9E-09 45.5 3.5 26 6-31 13-38 (172)
454 PRK04195 replication factor C 97.4 0.00068 1.5E-08 49.6 6.9 25 8-32 39-63 (482)
455 PF03205 MobB: Molybdopterin g 97.4 0.00012 2.6E-09 44.8 2.6 21 10-30 2-22 (140)
456 TIGR01351 adk adenylate kinase 97.4 0.00012 2.6E-09 47.7 2.7 21 10-30 1-21 (210)
457 PRK01889 GTPase RsgA; Reviewed 97.4 0.00019 4.1E-09 50.5 3.9 56 10-65 197-256 (356)
458 TIGR01313 therm_gnt_kin carboh 97.4 0.00011 2.4E-09 45.8 2.4 21 11-31 1-21 (163)
459 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00022 4.8E-09 45.4 3.8 24 9-32 26-49 (177)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00016 3.5E-09 47.2 3.3 23 10-32 32-54 (218)
461 PF13191 AAA_16: AAA ATPase do 97.4 0.00012 2.7E-09 46.2 2.6 25 6-30 22-46 (185)
462 TIGR00960 3a0501s02 Type II (G 97.4 0.00017 3.7E-09 47.1 3.3 22 10-31 31-52 (216)
463 PLN02200 adenylate kinase fami 97.4 0.00022 4.8E-09 47.3 3.8 24 7-30 42-65 (234)
464 cd01130 VirB11-like_ATPase Typ 97.4 0.00018 3.9E-09 46.0 3.2 25 8-32 25-49 (186)
465 PF13173 AAA_14: AAA domain 97.4 0.00017 3.7E-09 43.3 2.9 24 10-33 4-27 (128)
466 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00019 4E-09 46.5 3.3 23 10-32 28-50 (205)
467 PRK13851 type IV secretion sys 97.4 0.00021 4.5E-09 50.0 3.6 28 7-34 161-188 (344)
468 TIGR00073 hypB hydrogenase acc 97.4 0.00021 4.5E-09 46.5 3.4 26 6-31 20-45 (207)
469 cd03261 ABC_Org_Solvent_Resist 97.4 0.00019 4.2E-09 47.4 3.3 23 10-32 28-50 (235)
470 KOG3347 Predicted nucleotide k 97.4 0.00016 3.4E-09 44.6 2.6 25 6-30 5-29 (176)
471 cd03264 ABC_drug_resistance_li 97.4 0.00018 3.9E-09 46.8 3.1 22 10-31 27-48 (211)
472 cd03225 ABC_cobalt_CbiO_domain 97.4 0.0002 4.4E-09 46.5 3.3 22 10-31 29-50 (211)
473 PRK05541 adenylylsulfate kinas 97.4 0.00025 5.5E-09 44.8 3.6 24 7-30 6-29 (176)
474 TIGR01166 cbiO cobalt transpor 97.4 0.00019 4E-09 46.0 3.0 22 10-31 20-41 (190)
475 cd03292 ABC_FtsE_transporter F 97.4 0.00021 4.5E-09 46.5 3.3 22 10-31 29-50 (214)
476 TIGR02315 ABC_phnC phosphonate 97.4 0.00021 4.5E-09 47.5 3.3 22 10-31 30-51 (243)
477 COG3638 ABC-type phosphate/pho 97.4 0.00018 3.9E-09 47.6 2.8 21 10-30 32-52 (258)
478 cd03269 ABC_putative_ATPase Th 97.3 0.00023 4.9E-09 46.3 3.3 22 10-31 28-49 (210)
479 PRK13900 type IV secretion sys 97.3 0.00088 1.9E-08 46.8 6.3 36 7-42 159-194 (332)
480 cd03265 ABC_DrrA DrrA is the A 97.3 0.00023 4.9E-09 46.6 3.3 23 9-31 27-49 (220)
481 cd03224 ABC_TM1139_LivF_branch 97.3 0.00031 6.6E-09 46.0 3.9 24 9-32 27-50 (222)
482 cd03262 ABC_HisP_GlnQ_permease 97.3 0.00023 5E-09 46.3 3.3 23 10-32 28-50 (213)
483 TIGR02673 FtsE cell division A 97.3 0.00023 5E-09 46.3 3.3 22 10-31 30-51 (214)
484 cd02025 PanK Pantothenate kina 97.3 0.00019 4E-09 47.3 2.8 20 11-30 2-21 (220)
485 TIGR03608 L_ocin_972_ABC putat 97.3 0.00034 7.3E-09 45.3 4.0 23 10-32 26-48 (206)
486 PF05729 NACHT: NACHT domain 97.3 0.0002 4.4E-09 44.3 2.8 21 11-31 3-23 (166)
487 PRK05057 aroK shikimate kinase 97.3 0.00023 5.1E-09 45.0 3.1 22 9-30 5-26 (172)
488 TIGR03596 GTPase_YlqF ribosome 97.3 9.5E-05 2.1E-09 50.2 1.4 56 64-125 5-61 (276)
489 PRK13541 cytochrome c biogenes 97.3 0.00035 7.6E-09 44.9 4.0 23 10-32 28-50 (195)
490 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00091 2E-08 40.6 5.5 24 9-32 23-46 (133)
491 cd03263 ABC_subfamily_A The AB 97.3 0.00022 4.7E-09 46.7 3.1 23 10-32 30-52 (220)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00032 7E-09 43.0 3.6 23 10-32 28-50 (144)
493 cd03216 ABC_Carb_Monos_I This 97.3 0.00038 8.3E-09 43.6 4.0 24 9-32 27-50 (163)
494 PHA00729 NTP-binding motif con 97.3 0.00026 5.7E-09 46.6 3.4 25 7-31 16-40 (226)
495 cd03218 ABC_YhbG The ABC trans 97.3 0.00024 5.3E-09 46.8 3.3 23 10-32 28-50 (232)
496 PRK09270 nucleoside triphospha 97.3 0.00029 6.4E-09 46.5 3.6 26 5-30 30-55 (229)
497 KOG0463 GTP-binding protein GP 97.3 0.00031 6.6E-09 49.6 3.8 66 56-125 219-286 (641)
498 PRK15177 Vi polysaccharide exp 97.3 0.00034 7.3E-09 45.7 3.9 24 9-32 14-37 (213)
499 cd03259 ABC_Carb_Solutes_like 97.3 0.00025 5.5E-09 46.2 3.3 22 10-31 28-49 (213)
500 PRK14528 adenylate kinase; Pro 97.3 0.00025 5.5E-09 45.4 3.2 22 9-30 2-23 (186)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-39 Score=201.96 Aligned_cols=125 Identities=35% Similarity=0.718 Sum_probs=117.9
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|..+..+.+||+++|++|+|||+|+.||..+.|.+.+..|++.+++. .+.++++.+++++|||+||++|+.+...|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45677889999999999999999999999999999999999999954 78899999999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||++|+|||+++++||+++ ..|+.+++++. +++|.++||||+|+.+
T Consensus 82 ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred CCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 9999999999999999998 99999999987 6789999999999864
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-35 Score=180.62 Aligned_cols=120 Identities=33% Similarity=0.687 Sum_probs=111.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
...+|++++|+.++|||||+.||..+.|.+...+|++..| ...+.+++..+++++|||+||++|..+.+.|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4689999999999999999999999999998899998877 557888888999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++.+||..+ ..|.+++.+.. +++-+.|+|||+||.+
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 99999999999999 99999998876 6677889999999975
No 3
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.3e-34 Score=183.14 Aligned_cols=121 Identities=36% Similarity=0.723 Sum_probs=113.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
+...+||+++|++++|||||+++|..+.|.+.+.||.+..+...+.+++..+.+++|||+|++.|..++..+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45689999999999999999999999999999999998888777788898999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|||++++.||.++...|++.+++..++.|++|||||+||.
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 99999999999997689999999888899999999999985
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.2e-34 Score=181.00 Aligned_cols=118 Identities=88% Similarity=1.443 Sum_probs=110.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+|++++|++++|||||+.+|..+.|...+.+|.+..+...+.+++..+.+.+|||+|++.|+.++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999999999999988887777788889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++++||+++.+.|+..+++..+++|++|||||+||.+
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 99999999975689999988778999999999999853
No 5
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-34 Score=181.96 Aligned_cols=118 Identities=36% Similarity=0.725 Sum_probs=110.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
++||+++|++|+|||||+++|.++.|...+.||.+..+...+.+++..+.+++|||+|++.|..+...+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999998888777788888999999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+++++||+++...|+..+.+..+++|++|||||+||.
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 99999999996589999999888899999999999985
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-35 Score=179.84 Aligned_cols=123 Identities=28% Similarity=0.568 Sum_probs=116.5
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
|.....+|++++|+.|+|||+|+.+|+..+|.+.+..|++.++ .+.+.++++++++++|||+|++.|+.....|++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 4567899999999999999999999999999999999999988 557899999999999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+.++|||++++++|..+ ..|+..++++. +|..++|+|||+||..
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 99999999999999998 99999999985 8999999999999974
No 7
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.6e-34 Score=183.06 Aligned_cols=120 Identities=62% Similarity=1.108 Sum_probs=110.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
..+||+++|+.+||||||+++|..+.|.+.+.||.+..+...+.+++..+.+++|||+|++.|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 35899999999999999999999999999999999888776677888889999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||++++.||+++...|+..+.+..+++|++|||||+||.+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9999999999984579998887778999999999999853
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=182.06 Aligned_cols=125 Identities=32% Similarity=0.649 Sum_probs=116.9
Q ss_pred CCC-CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCccc
Q 033088 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 78 (127)
Q Consensus 1 m~~-~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (127)
|+. .....+|++++|+++||||+++.+|..+.|...+..|.+..++ +.+..++..+.+++|||+||+.|+.+...|++
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 444 5678999999999999999999999999999999999999885 47899999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
.|+++++|||+++..||.++ ..|++.+.++. +++|.+|||||+|++.
T Consensus 84 gA~gi~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hcCeeEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999998 77999999987 4999999999999975
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=179.88 Aligned_cols=119 Identities=36% Similarity=0.587 Sum_probs=111.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
+.+|++++|+.++|||||++||+.+.|...|.+|++.+| ...+.+.+..+.+++|||+||++|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 459999999999999999999999999999999999888 5578888999999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||+++..||.+. ..|++.+.+.. .++-++|||||.||.+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999998 99999998865 3577899999999975
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-34 Score=179.00 Aligned_cols=122 Identities=34% Similarity=0.603 Sum_probs=115.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
+..+.+||+++|++++|||-|+.||..+.|..+..+|++.++. ..+.++++.++.++|||+||++|+.+...|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 4568899999999999999999999999999999999999884 478899999999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+++|||++.+.+|+++ .+|+++++.+. ++++++|||||+||.+
T Consensus 90 AllVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred eEEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 9999999999999998 99999999988 8999999999999975
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=173.90 Aligned_cols=125 Identities=33% Similarity=0.644 Sum_probs=117.7
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+.....-+|.+|+|++|+|||+|+.+|..+.|...|..|++.++.. ++.+++..+++++||++|++.|+.+...|++.
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence 66666778899999999999999999999999999999999988854 78889999999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+++++|||+++.+||.++ .+|+++++.+++.+|-++||||.|.+.
T Consensus 81 thgv~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred CceEEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcc
Confidence 9999999999999999998 999999999999999999999999864
No 12
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4.4e-33 Score=176.35 Aligned_cols=117 Identities=61% Similarity=1.115 Sum_probs=108.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||+++|..+.|.+.+.||.+..+...+..++..+.+++||++|++.|..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998889999988887667778888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++++++++...|+..+....+++|++|||||+|+.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 9999999998457999998877889999999999985
No 13
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.9e-33 Score=182.54 Aligned_cols=119 Identities=38% Similarity=0.753 Sum_probs=110.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
++||+++|++|||||||+++|..+.|.+.+.||....+...+.+++..+.+.+|||+|++.|..++..+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 47999999999999999999999999999999998888777788888999999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|++++++++++...|...+....+++|++|||||+||..
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 999999999987789988888788999999999999853
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-33 Score=183.18 Aligned_cols=120 Identities=37% Similarity=0.695 Sum_probs=111.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
-..+||+++|+++||||||+++|..+.|...+.||.+..+...+.+++..+.+++|||+|++.|..+...+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35789999999999999999999999999999999988887777888999999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|||++++++|+.+...|+..+.+..++.|++|||||+||.
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999985589999999877899999999999985
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=9.8e-34 Score=174.86 Aligned_cols=125 Identities=34% Similarity=0.623 Sum_probs=114.3
Q ss_pred CCC-CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCccc
Q 033088 1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 78 (127)
Q Consensus 1 m~~-~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (127)
|++ .+...+||+++|++|+|||||+++|.+.+|...+..|++..+ .+.+.+++..+.+++|||+||++|..+.-.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 655 457789999999999999999999999999999999999888 567889999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~~ 126 (127)
.+|++++|||+.++.||..+ +.|.+++-... ...|++|+|||+|+..
T Consensus 81 gaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred CCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 99999999999999999998 99999876543 4689999999999864
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.6e-33 Score=177.61 Aligned_cols=121 Identities=29% Similarity=0.547 Sum_probs=109.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|+.|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+++||++|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 346799999999999999999999999998887777776664 4567788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|+|||++++.+|+++ ..|++++.+..+++|++|||||+||.+
T Consensus 83 llVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 83 ILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchh
Confidence 999999999999998 899999988778999999999999864
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.2e-32 Score=177.59 Aligned_cols=116 Identities=28% Similarity=0.590 Sum_probs=106.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+.|+++|+.|||||||+++|..+.|.+.+.+|.+..+ ...+.+++..+.+++||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999988888887666 446778888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+++++||+++ ..|+..+.+.. +++|+++||||+|+.
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999998 89999987764 689999999999985
No 18
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.5e-32 Score=172.80 Aligned_cols=117 Identities=69% Similarity=1.208 Sum_probs=107.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|||||||+.+|..+.|...+.++....+...+..++..+.+.+|||+|++.+..++..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999999889999887776677788888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+++++++.++...|+..+....+++|++|||||+|+.
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 9999999998557999888777889999999999985
No 19
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=7.6e-32 Score=172.55 Aligned_cols=118 Identities=47% Similarity=0.798 Sum_probs=107.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
.||+++|++|||||||+++|.++.+...+.+|.+..+...+..++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999999888899887776666778888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++++++.+...|+..+....++.|+++|+||+|+.+
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999999985579999988778999999999999864
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=166.27 Aligned_cols=121 Identities=32% Similarity=0.631 Sum_probs=112.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||++||++|+|||||+.+|..+.|.+....|++.+++. .+.+++..+++-+|||+||++|+.+.+.|++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 4567999999999999999999999999999988889999965 688899999999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|+|||++.+++|.++ +.|++++..++ +++-.++||||+|.++
T Consensus 88 IlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred EEEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 999999999999998 99999998876 5677789999999873
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.1e-32 Score=170.41 Aligned_cols=118 Identities=26% Similarity=0.492 Sum_probs=107.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|||||||+++|..+.+...+.++.+..+...+..++..+.+++||++|++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999999888888888777777788888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|++++.++..+ ..|...+.+. .+++|+++|+||+|+.+
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 99999999998 7788887764 36899999999999853
No 22
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=165.76 Aligned_cols=125 Identities=32% Similarity=0.591 Sum_probs=116.3
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+.....-+|++++|+.|+|||+|+++|..++|.+....|++.++ ++.+.+.++.+++++|||+||++|+...+.|++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 456677889999999999999999999999999999999999988 5567888999999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+.+.++|||++++++|+.+ ..|+..++... +++-++++|||.||..
T Consensus 82 AAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred ccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 9999999999999999998 99999999876 7889999999999975
No 23
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.98 E-value=2.1e-31 Score=173.92 Aligned_cols=119 Identities=29% Similarity=0.499 Sum_probs=108.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
...+||+++|++|||||||+++++.+.+...+.+|.+..+. ..+..++..+.+.+||++|++.|..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67899999999999999999999999999888898876654 35566677799999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|||+++++++..+ ..|+..+.+..+++|++|||||+|+.
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 99999999999998 89999998878899999999999985
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=2.7e-31 Score=165.79 Aligned_cols=118 Identities=29% Similarity=0.535 Sum_probs=105.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|||||||++++..+.+...+.+|....+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999999888888887666677778888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++..+ ..|+..+.+.. ++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999998 88888887643 5899999999999853
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=2.8e-31 Score=166.60 Aligned_cols=118 Identities=29% Similarity=0.614 Sum_probs=105.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+||+++|++|||||||+++|.++.+.+.+.++.+.++. ..+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998888888776664 4566788889999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999998 89999886654 6799999999999864
No 26
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=6.7e-31 Score=165.93 Aligned_cols=117 Identities=51% Similarity=1.005 Sum_probs=107.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+|++++|++|+|||||++++.++.+...+.+|..+.+...+..++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999888888877776677888888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++++++++...|+..+....++.|+++++||+|+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9999999998568999888766789999999999985
No 27
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-31 Score=160.60 Aligned_cols=119 Identities=33% Similarity=0.664 Sum_probs=110.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
..+|++++|.+.+|||||+.+++...|.+.+..|.+..++. ++.-..+.+.+++|||+|++.|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 57899999999999999999999999999999999998866 45556678999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+||.+|.+||+.+ +.|...++..+ .++|++++|||||+++
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcc
Confidence 9999999999998 99999999987 7999999999999975
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=4.7e-31 Score=166.50 Aligned_cols=116 Identities=63% Similarity=1.142 Sum_probs=106.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (127)
|+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||+|++.+..++..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888888777777778888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++++.+...|+..+.+..++.|+++|+||+|+..
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 999999985679999988878999999999999853
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=99.98 E-value=4.3e-31 Score=169.04 Aligned_cols=119 Identities=34% Similarity=0.555 Sum_probs=108.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+++|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999999998888888888887777888888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
|||+++++++..+ ..|+..+.+.. +++|+++|+||+|+.
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999998 88998887653 589999999999985
No 30
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=3.9e-31 Score=168.77 Aligned_cols=118 Identities=49% Similarity=0.995 Sum_probs=105.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEEC-CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|+|||||+++|.++.+...+.++.+..+...+... +..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888887776656665 67889999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|++++++++++...|+..+....++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 999999999985679998887778999999999999853
No 31
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=4.4e-31 Score=165.27 Aligned_cols=118 Identities=27% Similarity=0.530 Sum_probs=106.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
++||+++|++|||||||+++++.+.+.+.+.++.+..+...+..++..+.+++||++|++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888888777777788888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|++++.++..+ ..|+..+.+. .++.|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 99999999998 7888887653 36899999999999853
No 32
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=4.3e-31 Score=170.25 Aligned_cols=117 Identities=25% Similarity=0.399 Sum_probs=102.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEEC-----CeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-----GTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
+||+++|++++|||||+++|.++.|.+.+.+|.+..+. +.+.++ +..+.+++||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888888876553 234442 467899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhh--------------------CCCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHY--------------------SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|||++++.|++++ ..|+.++.+. .+++|++|||||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 9999999999999998 8999998653 24799999999999853
No 33
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=6.1e-31 Score=164.42 Aligned_cols=117 Identities=27% Similarity=0.533 Sum_probs=105.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|+|||||+++++.+.+.+.+.++....+...+..++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888876666667777888889999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
|+++++++.++ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 99999999998 88988887653 689999999999984
No 34
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.3e-30 Score=162.95 Aligned_cols=116 Identities=29% Similarity=0.599 Sum_probs=104.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||++++..+.+.+.+.++.+... ......++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999887777765443 445667788899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|++++.++.++ ..|+..+.+..++.|+++++||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999997 89999998877889999999999984
No 35
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.1e-30 Score=163.70 Aligned_cols=117 Identities=33% Similarity=0.654 Sum_probs=104.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+++||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888876553 35566777799999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++..+ ..|++.+.+.. ++.|+++|+||+|+..
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 99999999998 88999997765 5799999999999854
No 36
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=9.1e-32 Score=170.01 Aligned_cols=121 Identities=67% Similarity=1.169 Sum_probs=115.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEEC-CeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
...+|++++|+.++|||+|+..+..+.|+..|.||..+.|...+.++ +..+.+.+|||+||++|...+...+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 45799999999999999999999999999999999999999999995 99999999999999999998888999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|++.+++|+.++...|+.+++++++++|++|||+|.||.+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 999999999999999999999999999999999999999974
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=9.8e-31 Score=168.82 Aligned_cols=116 Identities=30% Similarity=0.546 Sum_probs=103.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEEC-CeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+||+++|++|||||||+++|.++.+...+.+|.+.++. ..+..+ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888899887664 456666 7789999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~~lv~nK~Dl~ 125 (127)
||+++++++..+ ..|+..+... ..++|++||+||+|+.
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999999998 8999888653 2578999999999986
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.3e-30 Score=165.94 Aligned_cols=115 Identities=29% Similarity=0.613 Sum_probs=103.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||+++|.++.|.+.+.+|.+..+. ..+..++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999887664 46778888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~~lv~nK~Dl~ 125 (127)
|+++++++.++ ..|+..+.+..+ ..| ++||||+|+.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 99999999998 899999887653 456 6889999984
No 39
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=1.3e-30 Score=163.74 Aligned_cols=119 Identities=29% Similarity=0.655 Sum_probs=106.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
..+||+++|++|+|||||+++|.++.+.+.+.++.+.++. ..+..++..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999999999888888877664 456677878899999999999999998999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+.. .++|+++|+||+|+.+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999998 88999988764 6799999999999863
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=2e-30 Score=167.14 Aligned_cols=121 Identities=32% Similarity=0.617 Sum_probs=108.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+..++..+.+.+||+||++.+...+..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 346799999999999999999999999998888888876553 4566677778999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|||+++++++..+ ..|+..+....++.|++||+||+|+..
T Consensus 83 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 83 IVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccc
Confidence 999999999999998 899999988888999999999999853
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=2.7e-30 Score=162.33 Aligned_cols=116 Identities=31% Similarity=0.567 Sum_probs=104.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||+++++.+.+...+.++.+.++. ..+..++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888876553 34556777899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+++++++..+ ..|+..+.+...++|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 99999999998 89999998887799999999999985
No 42
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.8e-30 Score=161.62 Aligned_cols=118 Identities=36% Similarity=0.592 Sum_probs=105.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|||||||+++|.++.+...+.++.+..+.....+++..+.+++||++|++.+..++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999999888888888777777778888888999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|++++.++.++ ..|+..+.+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999998 88888877653 5899999999999853
No 43
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=2.8e-30 Score=161.46 Aligned_cols=117 Identities=33% Similarity=0.689 Sum_probs=105.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|+|||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888887665 346777887899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++..+ ..|+..+.... .++|+++|+||+|+..
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999999998 89999987765 4799999999999853
No 44
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=5.7e-30 Score=161.56 Aligned_cols=117 Identities=56% Similarity=1.083 Sum_probs=106.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||+++|.++.+.+.+.++....+...+.+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776677788888899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++.+++++...|+..+....++.|+++++||+|+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 9999999998668999888777899999999999984
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=2.9e-30 Score=162.77 Aligned_cols=115 Identities=34% Similarity=0.606 Sum_probs=103.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
||+++|++|||||||+++|+++.|...+.+|.+..+. ..+..++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999999999999999999887764 466778888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~~lv~nK~Dl~ 125 (127)
+++++++..+ ..|+..+.+. . .+.|+++|+||+|+.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 9999999998 8899987553 2 357899999999985
No 46
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=2.6e-30 Score=163.99 Aligned_cols=120 Identities=39% Similarity=0.640 Sum_probs=104.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEEC----------CeEEEEEEEeCCCcccccccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE----------GTTVNLGLWDTAGQEDYNRLRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~D~~g~~~~~~~~~ 74 (127)
.+.+||+++|++|||||||+++|.++.+.+.+.++.+.++.. .+... +..+.+++||++|++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 357999999999999999999999999998888888766533 33332 4568899999999999999999
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
.+++++|++++|||+++++++.++ ..|+..+.... ++.|+++|+||+|+..
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 999999999999999999999998 89999987753 6899999999999853
No 47
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=6.7e-30 Score=161.37 Aligned_cols=118 Identities=53% Similarity=0.993 Sum_probs=107.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+.||+++|++|||||||+++|.++.+.+.+.++....+...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36999999999999999999999999888888888777666777888899999999999999999888999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+++++++..+...|+..+.+..++.|+++|+||+|+.
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 99999999998667999888777889999999999985
No 48
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3.3e-30 Score=161.64 Aligned_cols=117 Identities=26% Similarity=0.504 Sum_probs=104.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||++++.++.+...+.++.+..+......+...+.+++||++|++.+..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877776666677778999999999999999988889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~~lv~nK~Dl~~ 126 (127)
+++++++..+ ..|+..+.+.. +++|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 9999999998 88887776642 6799999999999864
No 49
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.2e-30 Score=167.05 Aligned_cols=115 Identities=37% Similarity=0.642 Sum_probs=103.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|++|||||||+++|..+.+...+.++.+..+......++..+.+++||++|++.|..++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777766677788888999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCCC
Q 033088 90 VSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~----~~~p~~lv~nK~Dl~ 125 (127)
++..++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 999999998 88988886542 579999999999985
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=3.3e-30 Score=161.61 Aligned_cols=118 Identities=32% Similarity=0.716 Sum_probs=105.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+||+++|++|||||||++++.++.+...+.++.+.++. ..+..++..+.+++||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 589999999999999999999999998887888776653 4566778788999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||+++++++.++ ..|+..+.+.. ++.|+++++||+|+..
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 999999999998 88999988765 6799999999999853
No 51
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=3.1e-30 Score=160.98 Aligned_cols=117 Identities=35% Similarity=0.634 Sum_probs=105.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEEC--CeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
+||+++|++++|||||++++.++.+.+.+.++.+..+ ...+.++ +..+.+++||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999999888888887666 3345555 667899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+..+++|+++|+||+|+..
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999999999998 899999988778999999999999853
No 52
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-31 Score=158.71 Aligned_cols=121 Identities=31% Similarity=0.606 Sum_probs=111.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...-+||+++|..|+|||+|+.+|..+-|++....|++..+ .+++.+++..+++++|||+|+++|+.+.+.|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 34579999999999999999999999999999999999888 55788999999999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+|||++...+|..+ .+|+.++.... ..+--++||||.|+.+
T Consensus 84 ilvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred EEEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhh
Confidence 999999999999998 99999999976 4566789999999864
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.5e-30 Score=160.50 Aligned_cols=119 Identities=33% Similarity=0.614 Sum_probs=105.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
+.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999998887777776555 3456677777899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.+++.+ ..|+..+.... +++|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999998 89999987754 6899999999999853
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1e-29 Score=159.90 Aligned_cols=120 Identities=35% Similarity=0.656 Sum_probs=105.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.+..+||+++|+++||||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999999888788877665 44667788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~ 125 (127)
++|||+++++++..+ ..|...+.+.. +++|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999998 88988775532 478999999999984
No 55
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=172.56 Aligned_cols=121 Identities=21% Similarity=0.363 Sum_probs=105.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEEC-------------CeEEEEEEEeCCCccccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-------------GTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~D~~g~~~~~ 70 (127)
....+||+++|+.|||||||+++|.++.+...+.+|++..+. ..+.++ +..+.+++||++|++.|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 346799999999999999999999999998888899877663 344443 246889999999999999
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~~lv~nK~Dl~~ 126 (127)
.++..++++++++|+|||++++.++.++ ..|++.+.... .++|++|||||+||..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999998 99999998752 2589999999999853
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=7.3e-30 Score=159.48 Aligned_cols=118 Identities=34% Similarity=0.566 Sum_probs=105.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+++||+||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988877788877666666677888889999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|++++.++..+ ..|+..+.+.. .+.|+++++||+|+..
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 99999999998 88888887642 5899999999999853
No 57
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=2.1e-30 Score=161.80 Aligned_cols=116 Identities=41% Similarity=0.818 Sum_probs=106.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-eeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
||+++|+++||||||+++|.++.+.+.+.++.+. .+...+..++..+.+++||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999998844 446678888999999999999999999888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~~lv~nK~Dl~~ 126 (127)
+++++|+..+ ..|+..+....+ ++|++|+|||.|+..
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccc-ccccccccccccccccceeeeccccccc
Confidence 9999999998 899999999887 799999999999864
No 58
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=6.3e-30 Score=159.92 Aligned_cols=117 Identities=33% Similarity=0.608 Sum_probs=104.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|||||||++++.+..+...+.++....+......++..+.+++||+||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888877776677778888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+++++++..+ ..|...+.+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999998 88888776543 4789999999999863
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=9.2e-30 Score=159.37 Aligned_cols=119 Identities=33% Similarity=0.608 Sum_probs=105.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
..+||+++|+++||||||++++.++.+...+.++.+.++ ...+..++..+.+++||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999998888888887665 4466777777899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.+..+ +.|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 9999999999998 899999988764 699999999999853
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=6.9e-30 Score=159.87 Aligned_cols=116 Identities=24% Similarity=0.578 Sum_probs=104.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||+++|+++.+.+.+.++.+.++ ...+..++..+.+++||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988888887766 345677788899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC------CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~~lv~nK~Dl~ 125 (127)
|++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99999999998 88999887754 368999999999985
No 61
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.7e-29 Score=161.98 Aligned_cols=116 Identities=34% Similarity=0.604 Sum_probs=104.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+||+++|++|+|||||+++|.++.+.. .+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999875 5777887666 34677888889999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
||++++.++.++ ..|+..+....++.|+++|+||+|+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccc
Confidence 999999999997 88999998876789999999999985
No 62
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.5e-29 Score=159.04 Aligned_cols=119 Identities=27% Similarity=0.598 Sum_probs=105.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
...+||+++|++|+|||||++++.+..+...+.++.+.++ ...+..++..+.+.+||++|++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999998888777776655 345667777889999999999999998899999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|||++++++++.+ ..|+..+++.. +++|+++|+||+|+.
T Consensus 82 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 82 LVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999998 89999987754 789999999999986
No 63
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=7.9e-30 Score=164.30 Aligned_cols=111 Identities=29% Similarity=0.543 Sum_probs=101.9
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCCh
Q 033088 14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 92 (127)
Q Consensus 14 iG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (127)
+|+++||||||+++|+.+.+...+.+|.+..+. ..+..++..+.+.+||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999999998888899876664 4567788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 93 ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.++..+ ..|+..+.+..+++|++|||||+|+.
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999998 88999998887899999999999984
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.4e-29 Score=159.47 Aligned_cols=118 Identities=31% Similarity=0.605 Sum_probs=103.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccc-ccCCCcccCCcEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFVL 85 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 85 (127)
.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+++||++|++.++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999999888888876655 3456678888999999999999887 578888999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||++++++++.+ ..|+..+.... .++|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 9999999999998 89999888754 6799999999999853
No 65
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=8.9e-30 Score=168.69 Aligned_cols=117 Identities=30% Similarity=0.501 Sum_probs=104.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|||||||+++|+++.+...+.+|.++.+...+.+++..+.+++|||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888876666677888888999999999999999888888999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~~lv~nK~Dl~~ 126 (127)
++++++|+++ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 9999999998 8888887542 25799999999999863
No 66
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.7e-29 Score=161.45 Aligned_cols=116 Identities=34% Similarity=0.584 Sum_probs=104.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+++||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999887888887666 345667777899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+++++++.++ ..|+..+.... .+.|+++++||+|+.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 99999999998 88999988764 568999999999986
No 67
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3e-29 Score=157.62 Aligned_cols=118 Identities=65% Similarity=1.179 Sum_probs=106.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999998788888877776666778888999999999999998888888999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++++++......|+..+....++.|+++|+||+|+..
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 99999999987889999888778999999999999864
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.6e-29 Score=157.73 Aligned_cols=117 Identities=32% Similarity=0.623 Sum_probs=103.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++++|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888777776655 345667777889999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++.++ ..|+..+.... +++|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 99999999998 88998886654 7899999999999853
No 69
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.4e-29 Score=157.76 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=104.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.+.+||+++|++|||||||+++|.++.+. ..+.+|.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 888898887764 4567778788899999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+... .++|+++|+||+|+.
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccc
Confidence 999999999999987 8888876432 479999999999985
No 70
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.6e-29 Score=164.72 Aligned_cols=117 Identities=31% Similarity=0.476 Sum_probs=103.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECC-eEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+||+++|++|||||||+++|.++.+...+.+|.+.++ ...+.+++ ..+.+++||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999988899987555 44556643 578999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~~lv~nK~Dl~~ 126 (127)
||+++++++..+ ..|+..+.+.. .++|+++|+||+|+.+
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 999999999998 88999988754 3578999999999863
No 71
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=2.4e-29 Score=163.95 Aligned_cols=121 Identities=31% Similarity=0.579 Sum_probs=108.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|||||||+++|.++.+...+.+|.+.++ ...+.+++..+.+++||++|++.+..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34679999999999999999999999999888888887776 45677788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+
T Consensus 89 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 89 LLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 999999999999998 89999988765 5799999999999853
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=6.7e-29 Score=156.09 Aligned_cols=118 Identities=31% Similarity=0.522 Sum_probs=106.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+++||+||++.|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888887777667777888899999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|++++++++.. ..|...+.+. ..+.|+++++||.|+..
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999998 8888888763 35899999999999853
No 73
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=6.3e-29 Score=161.41 Aligned_cols=123 Identities=25% Similarity=0.556 Sum_probs=107.7
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
|+....+||+++|++++|||||+++|....+.+.+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4456789999999999999999999999999888888877666 345677888889999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|||+++++++..+ ..|+..+.... ++.|+++++||+|+.+
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 99999999999999998 88988876654 6899999999999864
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6e-29 Score=159.37 Aligned_cols=116 Identities=34% Similarity=0.721 Sum_probs=102.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+||+++|++|||||||+++|..+.+.. .+.++.+..+.. .+.+++..+.+++||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 566777666543 567788889999999999999999888999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
||+++++++.++ ..|+..+.+.. .++|+++|+||+|+.
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 999999999998 88999988765 479999999999985
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6.3e-29 Score=161.50 Aligned_cols=118 Identities=31% Similarity=0.533 Sum_probs=102.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEE-CCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+||+++|++|+|||||+++|.++.+...+.++.+.++ ...+.+ ++..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999999888788876655 334555 4667899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++.++ ..|+..+.+.. ...|++||+||+|+..
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 9999999999998 88999887653 4578999999999863
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=7.1e-29 Score=155.15 Aligned_cols=117 Identities=35% Similarity=0.643 Sum_probs=101.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeee-eeEEEEC-CeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
+||+++|++|||||||++++..+ .+...+.++.+..+ ......+ +..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67778888886555 3344443 56799999999999999998999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++++++..+ ..|+..+....++.|+++|+||+|+..
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccc
Confidence 99999999999987 899999888777899999999999853
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=8e-29 Score=154.41 Aligned_cols=116 Identities=36% Similarity=0.598 Sum_probs=102.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|+++||||||++++.+..+...+.++.+.++ ...+..++..+.+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998887777776555 445667777789999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|.++++++..+ ..|+..+.... .+.|+++++||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 99999999998 88999886654 479999999999984
No 78
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.5e-28 Score=157.90 Aligned_cols=116 Identities=43% Similarity=0.739 Sum_probs=94.7
Q ss_pred eeEEEEECCCCCcHHHHHH-HHhcCC-----CCCCCCCcee--eeeeeE--------EEECCeEEEEEEEeCCCcccccc
Q 033088 8 FIKCVTVGDGAVGKTCMLI-CYTSNK-----FPTDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYNR 71 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 71 (127)
.+||+++|+.++|||||+. ++.++. +.+.+.||.+ ..+... ..+++..+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 665443 4566778874 233222 246788899999999999753
Q ss_pred cCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+...+++++|++++|||++++.|+.++...|+..+.+..+++|+++||||+||.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 456689999999999999999999998447999998877889999999999986
No 79
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=3e-29 Score=157.18 Aligned_cols=115 Identities=30% Similarity=0.501 Sum_probs=99.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc-ccccCCCcccCCcEEEEEEe
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 88 (127)
||+++|++|+|||||+++++.+.+...+.++....+......++..+.+++||+||++. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999998887777877666666677888889999999999985 34456678899999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~ 125 (127)
++++++++.+ ..|+..+.... .++|+++|+||+|+.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999998 88998887753 489999999999985
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=1.1e-28 Score=154.11 Aligned_cols=117 Identities=37% Similarity=0.704 Sum_probs=103.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|+++||||||++++.+..+...+.++.+.++. ..+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777776653 45667777789999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|++++.+++.+ ..|+..+.... +++|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 99999999998 77999887765 7899999999999864
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=1.1e-28 Score=153.87 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=94.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|||||||+.+|..+.|.+.+.++ ...+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999888766554 445556678888889999999999975 246788999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
+++++||+++ ..|+..+.... +++|+++||||.|+.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 9999999998 78999988764 679999999999984
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=1.7e-28 Score=153.17 Aligned_cols=117 Identities=36% Similarity=0.673 Sum_probs=104.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+||+++|++++|||||++++.++.+.+.+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887777777655 45677788889999999999999998888899999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
||+++++++..+ ..|+..+.... +++|+++++||+|+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999998 89999887765 789999999999986
No 83
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.7e-28 Score=153.98 Aligned_cols=117 Identities=23% Similarity=0.418 Sum_probs=98.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||+++|.++.+...+..+ ...+......++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999987664333 22333444556677899999999999888877788899999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++.++..+...|+..++...++.|+++|+||+|+.+
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 99999999975679998887767899999999999854
No 84
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=6.5e-29 Score=155.80 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=97.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (127)
|+++|++|||||||+++|.++.+...+.||.+... ..++...+.+++||++|++.++.++..+++.+|++++|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999988888888876432 233445688999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.++..+ ..|+..+.+..+++|+++|+||+|+..
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 99999988 788887765557899999999999864
No 85
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=1.8e-28 Score=154.27 Aligned_cols=116 Identities=34% Similarity=0.641 Sum_probs=101.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|+++||||||++++.+..+.+.+.++.+.++ ...+..++..+.+++||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776555 345677788889999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~ 125 (127)
|+++++++.++ ..|...+.... .++|+++|+||+|+.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 99999999887 77887765543 379999999999996
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=3.3e-28 Score=151.73 Aligned_cols=116 Identities=34% Similarity=0.704 Sum_probs=102.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+|++++|++++|||||++++.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777776654 34566777789999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
|++++.++..+ ..|+..+.+.. ++.|+++++||+|+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999998 77999887764 689999999999986
No 87
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=3.7e-28 Score=156.49 Aligned_cols=117 Identities=26% Similarity=0.473 Sum_probs=97.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccccc--------CCCcccC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYRG 79 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 79 (127)
+||+++|++|||||||+++|.++.|...+.|+.+... ...+..++..+.+++|||+|...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888876443 345667888899999999997654321 2345789
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|||+++++|++.+ ..|++.+.+. .+++|+++|+||+|+..
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 9999999999999999998 8888877664 36899999999999953
No 88
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=9e-29 Score=158.59 Aligned_cols=119 Identities=34% Similarity=0.609 Sum_probs=110.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
..+|++++|.+|+|||+|+.+|..+.|.+.|.||+++.|.+...+++..+.+.++||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|+++++.||+.+ ..+...+.+.. .++|+++||||+|+.+
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 999999999998 88888884432 5789999999999975
No 89
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=3e-28 Score=158.89 Aligned_cols=113 Identities=29% Similarity=0.473 Sum_probs=94.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|.+++|||||+++|..+.|.. +.+|.+..+... ....+.+.+||++|++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999875 466665544322 1135789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
++++++|.++ ..|+..+.+. .+++|++|||||+|+.+
T Consensus 77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999998 6555555443 46799999999999864
No 90
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=7e-28 Score=153.97 Aligned_cols=118 Identities=50% Similarity=0.872 Sum_probs=104.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+.|++++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 46999999999999999999998888877777776666666677777888999999999988887777889999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+++.+++.++...|+..+.+..+++|+++||||+|+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 99999999998557999998877889999999999984
No 91
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=152.11 Aligned_cols=122 Identities=34% Similarity=0.639 Sum_probs=111.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
.....||++++|..-+|||||+-||+.++|.....+|....| .+.+.+.+....+.+|||+||++|-..-+-|++..++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 356789999999999999999999999999998888887666 5567777788999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
.++|||++++.||+.+ ..|..+++... ..+-+++||||+||+.
T Consensus 89 alLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred eEEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 9999999999999998 99999999876 6788999999999974
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.6e-28 Score=153.64 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=93.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|+++||||||++++..+.+. .+.||.+..+. .... ..+.+++||++|+++++..+..+++.+|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999887765 35666654443 2222 35789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~ 125 (127)
|||++++.++.++...|.+.+... .+++|++||+||+|+.
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 999999999999844444444433 3679999999999985
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=1.2e-27 Score=148.95 Aligned_cols=117 Identities=38% Similarity=0.698 Sum_probs=100.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|++|+|||||+++++++.+.+.+.++....+ .......+..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999988776666664444 345556677788999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++..+ ..|++.+.... .+.|+++++||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999999998 88998887755 4799999999999863
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.6e-28 Score=154.66 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=94.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|+++||||||++++..+.+. .+.||.+..+. .+.. ..+.+++||++|++.++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34689999999999999999999987775 45677665442 2333 35789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHH-hh-hCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPEL-QH-YSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~-~~-~~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++.++ ..++..+ .. ..+++|++|++||+|+.+
T Consensus 91 V~D~s~~~s~~~~-~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred EEeCCcHHHHHHH-HHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 9999999999988 4454444 33 236899999999999864
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=3.8e-28 Score=153.73 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=94.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+++||++|++.++.++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999887774 45677665443 2223 34789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++.++ ..|+..+ ... .+++|++||+||+|+.+
T Consensus 87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 9999999999998 5555554 332 36799999999999863
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=4.3e-28 Score=151.35 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=91.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|.++||||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||++|++.+..++..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888876 46677654432 2333 35789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~-~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
++++.++..+ ..|+..+ ... ..+.|++|++||+|+.+
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 77 SNDRERIGEA-REELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CCCHHHHHHH-HHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 9999999998 5545444 332 25789999999999863
No 97
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.2e-27 Score=154.61 Aligned_cols=122 Identities=30% Similarity=0.533 Sum_probs=109.2
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
+.+...+|++++|++|||||||+++++.+.+.+.+.+|.+..+.. .+..++..+.+++||++|++.+...+..++++++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 566788999999999999999999999999988888888776644 4555777899999999999999989889999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++|||++++.++..+ ..|+..+.+..+++|+++++||+|+.
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99999999999999998 89999998777889999999999985
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.6e-27 Score=148.71 Aligned_cols=121 Identities=30% Similarity=0.607 Sum_probs=104.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+|++++|++|||||||++++..+.+.+.+.++.+..+ ...+..++..+.+.+||++|+..+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998888777777766444 33566778788999999999999999888999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..++... .++|+++++||+|+.+
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 84 ILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999999987 88998887755 4799999999999863
No 99
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=2.6e-27 Score=153.89 Aligned_cols=120 Identities=31% Similarity=0.579 Sum_probs=101.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||+++|.++.+. .+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456799999999999999999999998774 55677666553 4566677778999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
++|||+++++++.++...|...+.... .+.|+++|+||+|+.
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999998556877776543 568999999999985
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=3e-27 Score=147.50 Aligned_cols=117 Identities=33% Similarity=0.582 Sum_probs=104.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||++++....+...+.++....+......++..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999988888888777776677788888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
++++.++... ..|...+.+. ..+.|+++|+||+|+..
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999998 7777777665 36899999999999854
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=2.4e-27 Score=152.72 Aligned_cols=116 Identities=27% Similarity=0.444 Sum_probs=101.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|++|+|||||+++|+.+.+...+.++........+.+++..+.+++||++|+..+..++..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999888777777655555667778788999999999999998888899999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+++.+++.+ ..|+..+.+.. .++|+++|+||+|+..
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 999999998 88888877654 4799999999999853
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=1.1e-27 Score=152.45 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=93.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|+++||||||++++..+.+.. +.||.+..+. .+.. ..+.+++||++|++.++..+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 346899999999999999999998887764 5666664443 2333 35789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+...+.+.+... ..+.|++||+||.|+..
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 999999999999843444443332 25789999999999864
No 103
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=3.5e-27 Score=154.25 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=96.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcee-eeeeeEEEECCeEEEEEEEeCCCcccccccCCCccc-CCcEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVL 85 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 85 (127)
+||+++|++|+|||||+++|..+.+. ..+.++.+ +.+...+.+++....+.+||++|++. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66666665 44456677788889999999999982 23345566 9999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+..
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 9999999999998 88998887754 5899999999999853
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=4.4e-27 Score=145.46 Aligned_cols=116 Identities=40% Similarity=0.785 Sum_probs=103.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+||+++|+++||||||++++.+..+...+.++.+.++ ...+..++....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888777776655 345666777789999999999999889999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+++++++..+ ..|+..+.... ++.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999998 78999888876 789999999999985
No 105
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2e-27 Score=149.44 Aligned_cols=112 Identities=20% Similarity=0.311 Sum_probs=94.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
+|+++|+++||||||++++.+. +...+.+|.+... ..+..+ .+.+++||++|++.++.++..+++.+|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 5899999999999999999976 6666777776542 233343 47899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
++..++.++ ..|+..+.+.. .+.|+++|+||+|+.+
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 999999998 77887776542 5899999999999865
No 106
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.95 E-value=4.5e-27 Score=140.12 Aligned_cols=114 Identities=28% Similarity=0.508 Sum_probs=87.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
||+|+|++|||||||+++|++..+.. ...++.+.++. ...........+++||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 12222222222 2445555556699999999998888888889999999999
Q ss_pred EeCCChHHHHHHH--HHHHHHHhhhCCCCCEEEEeecCC
Q 033088 87 FSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLG 123 (127)
Q Consensus 87 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~~lv~nK~D 123 (127)
||++++++++++. ..|+..++....++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999972 236677776667899999999998
No 107
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=4.4e-28 Score=147.52 Aligned_cols=120 Identities=32% Similarity=0.548 Sum_probs=106.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEE-CCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...+++++||++-+|||||+++|..++|.+-.+||.+.++ .+.+.+ .+..+++++|||+||++|+.+.+.|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3578999999999999999999999999999999998777 444444 57889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC--CC-CCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS--PG-VPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~-~p~~lv~nK~Dl~~ 126 (127)
++|||.+|++||+.+ +.|+++...+. |. +-++|||+|+||..
T Consensus 86 llvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 86 LLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred EEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 999999999999998 99999987764 33 44679999999964
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=4.9e-27 Score=145.87 Aligned_cols=116 Identities=34% Similarity=0.651 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|++|||||||++++++..+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888878877755566667777788999999999999988888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
++++++.++ ..|...+.... ...|+++++||+|+..
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 999999998 77777777655 4899999999999864
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=6.1e-27 Score=147.43 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=92.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|.++||||||++++.+..+.. +.+|.+..+. .... ..+.+++||+||+..+...+..+++.+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887653 5666654442 2223 357899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
++++++.++ ..|+..+.+. ..+.|+++++||+|+..
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 999999998 7777766543 25689999999999863
No 110
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1.2e-26 Score=147.27 Aligned_cols=116 Identities=31% Similarity=0.488 Sum_probs=101.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
.||+++|++|+|||||++++....+...+.++....+......++..+.+++||+||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999888777787766666667777778889999999999999888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
.++..+++.+ ..|...+.+.. .+.|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 9999999998 66666665532 578999999999985
No 111
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.2e-29 Score=150.73 Aligned_cols=121 Identities=40% Similarity=0.633 Sum_probs=107.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEE---------CCeEEEEEEEeCCCcccccccCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA---------EGTTVNLGLWDTAGQEDYNRLRP 74 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~D~~g~~~~~~~~~ 74 (127)
...-+|++.+|++|+||||++.++..++|......|.+.+++.. +.+ .+..+.+++|||+||++|+....
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 45678999999999999999999999999999999998888542 222 23458899999999999999999
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
.|++++=+++++||+++++||-++ +.|+.+++.+. ++..++++|||+||++
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 999999999999999999999998 99999998864 7888999999999975
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=2e-26 Score=146.80 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=95.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEE-CCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
+.+||+++|++|||||||++++..+.+... .+|.+.... ..+.. ++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998887654 555543332 23332 345688999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
+|+|+++..++..+ ..|+..+.+.. .+.|+++++||+|+.
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 99999999999887 77777665532 579999999999985
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=2.6e-26 Score=144.95 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=93.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|++|||||||++++.+..+ ..+.+|.+... ..+..+ .+.+.+||+||++.++.++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4578999999999999999999997744 34556655322 233344 4679999999999998888999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++... ..|+..+... ..+.|+++|+||+|+.+
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 9999999999987 6666665432 36899999999999864
No 114
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.8e-27 Score=139.98 Aligned_cols=121 Identities=29% Similarity=0.597 Sum_probs=111.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.+..+|.+++|+-|+|||+|+++|...+|-..-..+++.++ .+.+.+.+..+++++||++|+++|+...+.|++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 46789999999999999999999999999988888998888 55788889999999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++.++.++.+ ..|+...+..- |+..++++|||+||+.
T Consensus 88 lmvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred eEEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhh
Confidence 999999999999998 99999887753 8888999999999975
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=1.6e-26 Score=144.08 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=91.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+|+++|+++||||||+++|.+..+ ...+.+|.+.... .. ....+.+++||+||++++...+..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998753 4556677654322 12 2235789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~----~~~~p~~lv~nK~Dl~~ 126 (127)
++++.++..+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 9999999887 6777766442 25799999999999853
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=7.5e-26 Score=143.07 Aligned_cols=115 Identities=20% Similarity=0.287 Sum_probs=92.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
..+||+++|++++|||||++++..+.+.. +.++.+..+. ....+ ...+.+||+||++.+...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999888765 4566654442 23333 47899999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
+|+++++++... ..++..+ ... ..+.|+++++||+|+..
T Consensus 90 ~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 90 IDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 999999999887 4444444 332 25799999999999853
No 117
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=146.66 Aligned_cols=119 Identities=37% Similarity=0.650 Sum_probs=105.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+||+++|+.|||||||+++|.++.+...+.++.+..+.. .....+..+.+.+||++|++.++.++..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4999999999999999999999999999999988766644 444444478899999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||..+..++..+...|...+.... .+.|+++++||+|+..
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999997766666799999999987 4799999999999864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=7.2e-26 Score=140.97 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=89.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|++++|||||++++..+.+.. +.++.+..+. .+.. ..+.+++||+||++.+..++..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877653 4555544332 2223 347899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
+++.++......|...++.. ..+.|+++++||+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 99988887634444444432 25799999999999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=1.3e-25 Score=139.79 Aligned_cols=112 Identities=24% Similarity=0.332 Sum_probs=90.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
+|+++|++|||||||+++|.++.+.. +.+|.+..+. .+.. +..+.+.+||++|+..+...+..+++.+|++++|+|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988754 3555543332 2233 3457899999999999988888899999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
+++.++..+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 999988887 66666554322 589999999999985
No 120
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-27 Score=147.80 Aligned_cols=121 Identities=36% Similarity=0.550 Sum_probs=112.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.+..+|++|+|..++||||++++||.+.|...+..+++..+. +.+.++...+.+.+||++|++++..+...|++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 457899999999999999999999999999999999988874 4677777788899999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++||+.+|+.||+.. ..|.+.+......+|.++|-||+||.+
T Consensus 97 vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhH
Confidence 999999999999998 999999999999999999999999864
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=6.8e-25 Score=138.91 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=94.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+..||+++|..+|||||+++++..+.... ..||.+... ..+..++ +.+.+||++|+..++..|+.|++++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4789999999999999999999998765433 445544332 2334444 67899999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+|+|.++.+.+.++...+...+.... .+.|+++++||+|+.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 99999999999988555555555432 6899999999999875
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.1e-24 Score=138.99 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=91.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|.+|+|||||++++.++.+.. +.+|..... .....+ .+.+.+||++|+..++..+..+++.+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999876642 344433221 222333 3679999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|+|++++.++... ..++..+.+. ..+.|+++++||+|+..
T Consensus 91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999999887 5555555432 26799999999999863
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=7.2e-25 Score=136.31 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=90.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
||+++|.+|||||||++++++..+ ..+.++.+.... ....+ .+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 344555543332 22333 46899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 90 VSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
+++.++..+ ..|+..+... ..+.|+++++||+|+..
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 999999998 6666655443 26899999999999864
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.92 E-value=1.9e-24 Score=138.24 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=92.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+..||+++|++|||||||++++.++.+. .+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999987764 4555554332 2334443 678999999999998888889999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|+|.++..++... ..|+..+.+. ..+.|+++++||+|+..
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 9999999999887 5666655432 25799999999999863
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=1.1e-24 Score=136.57 Aligned_cols=113 Identities=22% Similarity=0.337 Sum_probs=87.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
+|+++|++|+|||||++++..... ...+.++.+..+. .+..+ ...+.+||+||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976432 2233444443332 23333 46899999999999999889999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
++|+|.++++++... ..|+..+.+. ..+.|+++++||+|+..
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 999999998888887 6666665543 25899999999999853
No 126
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=6.4e-27 Score=138.42 Aligned_cols=113 Identities=33% Similarity=0.678 Sum_probs=102.3
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC
Q 033088 13 TVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (127)
Q Consensus 13 iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (127)
++|++++|||+|+-||..+.|... ..+|.+.+|+. .+..++..+++++|||+||++|++....|++.+|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999998888754 56788888854 6788899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 91 SRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+.||++. +.|+.++.+.. ..+.+.++|||+|+.+
T Consensus 82 nkasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 82 NKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred cchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccch
Confidence 99999998 99999999876 5788999999999854
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=2e-24 Score=133.58 Aligned_cols=112 Identities=27% Similarity=0.406 Sum_probs=92.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 90 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (127)
|+++|++|||||||++++.+..+...+.++.+..+.. ...++ +.+.+||+||+..++..+..+++.+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7899999999999999999999988888877655432 23333 78999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 91 SRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 91 ~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
+..++... ..|+..+... ..+.|+++|+||+|+..
T Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 99888887 5555554332 25789999999999854
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=3.8e-24 Score=130.21 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=95.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.++.++|+++|..||||||++++|.+.. .+...||.+...+.. ....+++++||.+||...+..|+.||+.+|+.|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl---~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTL---EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEE---EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 5679999999999999999999999766 444556665443322 234578999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~~lv~nK~Dl~ 125 (127)
+|+|.+++.++++....+...+.. +.-..|++|++||.|++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 999999999999885555555543 23578999999999987
No 129
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.3e-24 Score=132.51 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=100.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+..+|+++|-.++||||+++++..+..... .||++.... .+.+. .+.+.+||.+||++++..|++|+++++++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 46789999999999999999999988877655 777764432 23333 578999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||+|.+|++.+.++.+++...+.... .+.|+++++||.|++.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 99999999999999777777776644 6899999999999874
No 130
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=1.2e-23 Score=136.00 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=87.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCC-cEEEEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLAF 87 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 87 (127)
+|+++|+++||||||+++|..+.+...+.++.. .... .....+....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999887766544322 2211 111113456799999999999998888889998 9999999
Q ss_pred eCCCh-HHHHHHHHHHHHHHhh---hCCCCCEEEEeecCCCCC
Q 033088 88 SLVSR-ASYENVLKKWIPELQH---YSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~~lv~nK~Dl~~ 126 (127)
|.++. .++..+.+.|+..+.. ..+++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6777763444443332 236899999999999853
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=3.8e-23 Score=127.45 Aligned_cols=119 Identities=38% Similarity=0.569 Sum_probs=98.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+||+++|.+|+|||||++++....+...+.++.+..+.. ....++..+.+.+||+||+..+...+..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999988776666666655543 355666668899999999999988888889999999999
Q ss_pred EeCCCh-HHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCCCC
Q 033088 87 FSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~~lv~nK~Dl~~ 126 (127)
+|+... .++......|...+.+... +.|+++++||+|+..
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 999887 6777764477777766554 899999999999864
No 132
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=130.52 Aligned_cols=126 Identities=29% Similarity=0.484 Sum_probs=112.8
Q ss_pred CCCCCcc--eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEE-CCeEEEEEEEeCCCcccccccCCCcc
Q 033088 1 MASSASR--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSY 77 (127)
Q Consensus 1 m~~~~~~--~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~ 77 (127)
|.+.... .+|++++|+.|.|||+++++.+.+.|...+.+|++......... +...+++..|||.|++.+......++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 5555554 99999999999999999999999999999999998877655444 33469999999999999999999999
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~~ 127 (127)
-++.+.+++||+..+-.+.++ .+|.+.+.+.+.++|++++|||.|..++
T Consensus 81 I~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKAR 129 (216)
T ss_pred EecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceecccc
Confidence 999999999999999999998 9999999999999999999999998753
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=1.1e-22 Score=128.80 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=82.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-------CCCCCCCce------eeeeee---EEEE---CCeEEEEEEEeCCCccccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFSA---NVVA---EGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~-------~~~~~~~~~------~~~~~~---~~~~---~~~~~~~~~~D~~g~~~~~ 70 (127)
+|+++|..++|||||+++|++.. +...+.++. +.++.. .... ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 111222221 112211 1122 5567889999999999999
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+..+++.+|++|+|+|+++..+.+.. ..|..... .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLP 132 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 9888899999999999999987666665 55544332 478999999999985
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=4.1e-22 Score=125.53 Aligned_cols=117 Identities=23% Similarity=0.335 Sum_probs=90.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
....++++++|++|||||||++++.+..+. .+.++.+... ..+..++ ..+.+||++|+..+...+..+++.+|+++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 345899999999999999999999987653 2344444222 2333443 57899999999988888888899999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|.++..++... ..|+..+ ... ..++|+++++||+|+..
T Consensus 87 ~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 87 YVIDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 99999998888887 5454444 332 25799999999999853
No 135
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=126.18 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=101.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
.+..+.++|-.+||||||+|..+.+.+.+.-.||.+....+ ++...+.+.+||.+||..|+.+|..|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 36789999999999999999999998888878887755433 344457899999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+|+++++.+.....++...+.+.. ..+|++++|||.|+..
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 999999998888778888887765 7899999999999874
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=3.2e-22 Score=125.58 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=79.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccc----ccccCCCcc---cCCc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED----YNRLRPLSY---RGAD 81 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~---~~~~ 81 (127)
+|+++|.+|+|||||++++.+........+...... ...+..++ ...+.+|||||... ...+...++ +.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999987543211111111111 11122222 24799999999642 222333333 4599
Q ss_pred EEEEEEeCCCh-HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
++++|+|+++. .+++.+ ..|.+.+.... .+.|+++|+||+|+..
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 99999999998 788887 88988887654 3689999999999854
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=2.4e-22 Score=129.09 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=82.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc--CCCCCCCC------------Cceeeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
..+|+++|.+++|||||+++|+. +.+...+. .+.+.++ .....++.....+.+|||||+++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999997 45543321 1122222 222334444578999999999999998
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
...+++.+|++++|+|+++.. .... ..|+..+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCC
Confidence 899999999999999998743 2222 344444443 478999999999985
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=1.4e-21 Score=122.49 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=77.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCC---------cccC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL---------SYRG 79 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---------~~~~ 79 (127)
.+|+++|.+|+|||||+++|.+..+.....+...... ...........+.+|||||+.......+. ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL-FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 3799999999999999999998876432111111111 11112223478999999998532111110 1123
Q ss_pred CcEEEEEEeCCChHHH--HHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|+|++++.++ ... ..|+..+.....+.|+++|+||+|+.+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 6899999999987653 444 678888876656899999999999854
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-21 Score=117.96 Aligned_cols=121 Identities=30% Similarity=0.427 Sum_probs=100.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEE-CCeEEEEEEEeCCCcccc-cccCCCcccCCc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDY-NRLRPLSYRGAD 81 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~ 81 (127)
.+..|++++|..++|||+++++++.+.... ++.+|+++.|...+.. ++..-.+.++||.|...+ ..+-++|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 357899999999999999999998765553 4678888888665444 355567999999998777 567788999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~~ 127 (127)
++++||+..+++||+.+ +.+.++|.++. ..+|+++++||+|+.+|
T Consensus 87 afVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred eEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccc
Confidence 99999999999999998 88888887754 57999999999999765
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=1.2e-21 Score=126.67 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=82.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC--CceeeeeeeEEEECCeEEEEEEEeCCCccc---------ccccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~ 74 (127)
+..++|+++|++|||||||++++.+..+..... ++.... ...+...+. ..+.+||+||... +....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 446899999999999999999999876443222 222211 222333332 3788999999732 11111
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
..+..+|++++|+|++++.+.... ..|.+.+.... .+.|+++|+||+|+..
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 125689999999999998887776 67777776543 5789999999999854
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.5e-21 Score=116.34 Aligned_cols=117 Identities=20% Similarity=0.283 Sum_probs=97.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.++++|+++|-.++||||++..++.++.. ...||++..... +.+ +.+.+++||.+|+++.+..|++|+..+.++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvet-Vty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET-VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEE-EEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46899999999999999999999977654 345666543322 233 34789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|.|.+++....++..++...+.... .+.|+++.+||.|++.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 9999999999998777877776654 6899999999999875
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=1.2e-21 Score=122.07 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=74.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---CCCCCCCCc--eeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.|+++|++++|||||+++|.+. .+.+++.++ ....+ ....... ...+.+|||||++++......+++.+|+++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 6899999999999999999863 233222222 22222 2233332 357999999999988766667788999999
Q ss_pred EEEeCCC---hHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+++ .++...+ ..+... ...|+++++||+|+..
T Consensus 80 ~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 80 LVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVD 118 (164)
T ss_pred EEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccC
Confidence 9999987 3333322 222221 2248999999999864
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=1.8e-21 Score=121.91 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=81.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEEC-CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.|+++|.+|+|||||+++|....+.....++...... .....+ +....+.+|||||+..+..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 5899999999999999999988877654443333322 223332 23567999999999998888888899999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+++....+.. ..+..+.. .+.|+++|+||+|+.
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKP 115 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecc
Confidence 99875322221 22223333 478999999999985
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.87 E-value=3.2e-21 Score=117.70 Aligned_cols=113 Identities=40% Similarity=0.759 Sum_probs=89.3
Q ss_pred EECCCCCcHHHHHHHHhcCCC-CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC
Q 033088 13 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (127)
Q Consensus 13 iiG~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (127)
++|++|+|||||++++..... .....++....+.......+....+.+||++|+..+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 4444555533334455555667889999999998888877888999999999999999
Q ss_pred hHHHHHHHHHH--HHHHhhhCCCCCEEEEeecCCCCC
Q 033088 92 RASYENVLKKW--IPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 92 ~~s~~~~~~~~--~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+.... ..| .........+.|+++++||+|+..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 9988887 555 333333447899999999999864
No 145
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=7.3e-21 Score=120.54 Aligned_cols=94 Identities=33% Similarity=0.595 Sum_probs=83.1
Q ss_pred CCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhh
Q 033088 31 NKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (127)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (127)
+.|.+.+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+ ..|+..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 467778889998777 44577888889999999999999999999999999999999999999999998 8899888664
Q ss_pred C-CCCCEEEEeecCCCC
Q 033088 110 S-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 110 ~-~~~p~~lv~nK~Dl~ 125 (127)
. +++|++|||||+||.
T Consensus 82 ~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLG 98 (176)
T ss_pred cCCCCeEEEEEECcccc
Confidence 4 679999999999985
No 146
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=2.3e-21 Score=117.46 Aligned_cols=120 Identities=26% Similarity=0.536 Sum_probs=108.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
++.-.+||-++|++..|||||+-.+.++.+.+++..+.+..+ .+.+.+.+..+.+.+||.+|++++..+.+-..+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 455689999999999999999999999999888888888877 5678899999999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
++|+||++.++.++.+ ..|+++.+..+...--++||+|-|+
T Consensus 96 IlFmFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred EEEEEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHh
Confidence 9999999999999998 9999999987755555788999875
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1e-20 Score=134.19 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=83.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccccccc--------CCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 76 (127)
..+||+++|++|+|||||+|+|++... ...+..++.+.....+..++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 568999999999999999999998643 33333333333344555665 45789999998654332 2357
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.+++.++... |+..+.. .+.|+++|+||+|+..
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKI 324 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCC
Confidence 7899999999999988776652 6666643 4789999999999854
No 148
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=1e-21 Score=120.25 Aligned_cols=95 Identities=23% Similarity=0.229 Sum_probs=69.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc-----cccccCCCcccCCcEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFV 84 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i 84 (127)
||+++|++|+|||||+++|.+..+. +.+|.+..+ . -.+||+||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 233332221 1 1589999973 2333333 478999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|||++++.++.. ..|...+ ..|+++|+||+|+.
T Consensus 68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLA 101 (142)
T ss_pred EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccC
Confidence 9999999988765 3555433 23999999999985
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=9.5e-21 Score=131.08 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=82.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC-CceeeeeeeEEEECCeEEEEEEEeCCCcc---------cccccCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRPLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 76 (127)
..++|+++|.+|+|||||+|+|.+........ .++-+.....+...+ ...+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 45899999999999999999999876543222 222222333445532 2478999999972 122222 24
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|++++|+|++++.+.... ..|...+.... .+.|+++|+||+|+..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 7789999999999998877765 66666665543 5789999999999853
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=7.5e-21 Score=136.28 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCcee-eeeeeEEEECCeEEEEEEEeCCCccc--------ccccCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 76 (127)
...+|+++|.+|+|||||+|+|.+..... ...+..+ +........++ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 45799999999999999999999876432 2222222 22223344444 3588999999763 23334557
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++.+|++++|+|++++.+... ..|...+++ .+.|+++|+||+|+.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDE 159 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCC
Confidence 889999999999998765543 456666654 579999999999985
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.5e-20 Score=129.79 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=77.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeeeeEEEECCeEEEEEEEeCCCcccc-cccC-------C
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLR-------P 74 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~-------~ 74 (127)
+.+.++|+++|.+|+|||||+|+|.+..+... ...++.......+..++ .++.+|||||.... ..+. .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 45678999999999999999999998876421 11111111222334444 46899999998432 2211 1
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..++.+|++++|+|..+ ++......|+..+.. .+.|.++|+||+|+.
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~--~~~p~IlViNKiDl~ 173 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS--LNIVPIFLLNKIDIE 173 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh--cCCCEEEEEEhhcCc
Confidence 23679999999999765 344443456666654 356778999999985
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=4e-20 Score=124.26 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=74.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC--CCceeeeeeeEEEECCeEEEEEEEeCCCcccccc--------cCCCcccC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRG 79 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 79 (127)
+|+++|.+|+|||||+|+|.+.+..... ..|+... ...+...+ ..++.+|||||...... ....+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999988754221 1222221 12222222 24689999999754211 12345789
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKF 121 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCC
Confidence 99999999998865543 344555544 4789999999999853
No 153
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=5.1e-20 Score=116.92 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=78.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCCcc----------ccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQE----------DYNRL 72 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~----------~~~~~ 72 (127)
......+|+++|.+|+|||||++++++..+...+.++.+.+.... ...++ .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 446789999999999999999999998765444444443332222 22232 58999999952 23333
Q ss_pred CCCccc---CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYR---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+++ .++++++|+|.+++.+..+. .++..+.. .+.|+++++||+|+..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCC
Confidence 334444 35799999999876444442 33444443 4789999999999853
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7.8e-20 Score=131.06 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=81.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc----------cccccC-
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLR- 73 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~- 73 (127)
..+||+++|.+++|||||+++|++..+. .....++.+.....+..++. .+.+|||||.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 22222332233344555654 45799999953 222221
Q ss_pred CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++.+|++++|+|++++.+++.. .++..+.. .+.|+++|+||+|+..
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCC
Confidence 2357899999999999998888875 45555544 5789999999999853
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=9.6e-21 Score=122.12 Aligned_cols=115 Identities=20% Similarity=0.119 Sum_probs=74.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCC-----------cccccccC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLR 73 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~ 73 (127)
+...++|+++|.+|+|||||++++.+..+.....+..+.. ......+ .+.+||||| ++.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4467899999999999999999999887654444433221 2222222 589999999 45565555
Q ss_pred CCccc----CCcEEEEEEeCCChHHHH---------HHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYR----GADVFVLAFSLVSRASYE---------NVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++ .++++++|+|.++..... .....+...+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccC
Confidence 44543 457888888876532210 001222333333 4799999999999853
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=7.6e-20 Score=130.25 Aligned_cols=112 Identities=23% Similarity=0.235 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccccccc--------CCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 76 (127)
..++|+++|.+|+|||||+|+|.+... ......++.+.....+..++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998754 22223333333344455555 46899999998654332 2236
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.+++.++... ..|.. ..+.|+++|+||+|+..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccc
Confidence 7899999999999988776654 44443 35789999999999864
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=1.1e-19 Score=112.40 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=76.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeee-eeEEEECCeEEEEEEEeCCCccccccc--------CCCccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR 78 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 78 (127)
++|+++|++|+|||||++++.+..... ...+...... ......+ ...+.+|||||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 1122222222 2233333 357899999997654321 123567
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLP 121 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCC
Confidence 89999999999987766664 33332 35799999999999864
No 158
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=9.5e-20 Score=125.31 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=81.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCC---cccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPL---SYRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~ 80 (127)
-.|.++|.+++|||||++++...+... .+.-|+-....-.+.+. ....+.+||+||..+ ...+... .++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 568999999999999999999765332 22222211111222332 224689999999632 1122222 45679
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
+++++|+|+++.+++++. ..|..++.... .+.|+++|+||+|+..
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 999999999987788887 88999888764 3789999999999853
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=8.7e-20 Score=112.89 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=74.4
Q ss_pred EEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc--------cCCCcccCCc
Q 033088 12 VTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 81 (127)
Q Consensus 12 ~iiG~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 81 (127)
+++|.+|+|||||++++++... .....++...........++ ..+.+|||||...+.. ....+++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999997652 22333333222233333433 5789999999877543 3344678899
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++|+|..+..+... ..+...+.+ .+.|+++|+||+|+..
T Consensus 79 ~ii~v~d~~~~~~~~~--~~~~~~~~~--~~~piiiv~nK~D~~~ 119 (157)
T cd01894 79 VILFVVDGREGLTPAD--EEIAKYLRK--SKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEEeccccCCccH--HHHHHHHHh--cCCCEEEEEECcccCC
Confidence 9999999977544433 233444443 3599999999999865
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=9e-20 Score=116.00 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=81.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee--------------eeee-eEEEECCeEEEEEEEeCCCcccccccCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------------DNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP 74 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 74 (127)
+|+++|.+|+|||||++.+++.........+.. .+.. ...........+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998766544322110 0000 0111122245799999999998888888
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+++.+|++++|+|..+..+... ..++..+.. .+.|+++++||+|+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcc
Confidence 88999999999999987655443 345555554 5799999999999864
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.82 E-value=1.1e-19 Score=132.96 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=86.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCC-------CCCCCCCc------eeeeeee-E--EEE---CCeEEEEEEEeCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPT------VFDNFSA-N--VVA---EGTTVNLGLWDTAGQE 67 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~-------~~~~~~~~------~~~~~~~-~--~~~---~~~~~~~~~~D~~g~~ 67 (127)
...+++++|..++|||||+++|+... +...+..+ .+.++.. . +.. ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35789999999999999999998642 22222221 1222221 1 212 4566899999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|...+..+++.+|++++|+|+++..+.+.. ..|...+. .++|+++|+||+|+.+
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCc
Confidence 9998888999999999999999987777775 66665554 3789999999999853
No 162
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.82 E-value=5.7e-20 Score=130.60 Aligned_cols=122 Identities=23% Similarity=0.396 Sum_probs=100.3
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
+....++|+++|+.|+|||||+..+....|++.- |..-.............+...+.|++..++-+......++++|++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 4557899999999999999999999999998663 333333333334444556789999988777766667788999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
.+||+++++++++.+...|+..+++.. .++|+||||||+|...
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 999999999999999999999999977 7899999999999864
No 163
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.82 E-value=2.4e-19 Score=112.95 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=75.3
Q ss_pred EECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccC---CCcccCCcEEE
Q 033088 13 TVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSYRGADVFV 84 (127)
Q Consensus 13 iiG~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~i 84 (127)
++|++|+|||||++++.+.... ..+..++..........++ ...+.+||+||... .+.+. ..+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987652 2222222111122233331 35689999999743 22222 22367899999
Q ss_pred EEEeCCCh------HHHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+++. .++... ..|...+.... .+.|+++|+||+|+..
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 99999987 466665 66766665432 3799999999999864
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=2.3e-19 Score=111.20 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=74.1
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccccc------CCCcc--cCCcEE
Q 033088 13 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 83 (127)
Q Consensus 13 iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~ 83 (127)
++|.+|+|||||++++.+..+.....+..+... ...+..++ ..+.+|||||+..+... +..++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765443333332222 33444554 47899999999776542 34455 489999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|+|.++.+.. ..|...+.+ .+.|+++++||+|+..
T Consensus 79 i~v~d~~~~~~~----~~~~~~~~~--~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 79 VNVVDATNLERN----LYLTLQLLE--LGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEeeCCcchhH----HHHHHHHHH--cCCCEEEEEehhhhcc
Confidence 999999875432 234444443 4789999999999854
No 165
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=4.5e-19 Score=111.12 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=75.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCC-ceeeeeeeEEEECCeEEEEEEEeCCCccccccc-----------CC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------RP 74 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 74 (127)
.++|+++|.+|+|||||++++.+...... ..+ +...........++ ..+.+||+||..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 57999999999999999999998754321 112 21112222333444 34789999997543111 11
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+++.+|++++|+|..++.+.... .+...+.. .+.|+++++||+|+..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVE 127 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCC
Confidence 245789999999999987665553 34444433 4689999999999864
No 166
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=2.2e-19 Score=127.69 Aligned_cols=111 Identities=22% Similarity=0.201 Sum_probs=76.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc--------ccccCCCccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSYR 78 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 78 (127)
.+|+++|.+|+|||||+++|.+.... .....++.+........++ ..+.+|||||... +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 2222222222333444555 6799999999876 2223345678
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++|++++|+|..++.+... ..+...+++ .+.|+++|+||+|+.
T Consensus 80 ~ad~il~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRAGLTPAD--EEIAKILRK--SNKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCcEEEEEECccCc
Confidence 9999999999987533322 122333333 278999999999974
No 167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=1.4e-19 Score=117.91 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=79.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC-----------CCc------eeeeee---eEEEE---CCeEEEEEEEeCCCc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPT------VFDNFS---ANVVA---EGTTVNLGLWDTAGQ 66 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~-----------~~~------~~~~~~---~~~~~---~~~~~~~~~~D~~g~ 66 (127)
+|+++|..++|||||+++|+........ ..+ .+.+.. ..+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 000 011110 01111 345688999999999
Q ss_pred ccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+|......+++.+|++++|+|+++..+... ..|+..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9998888888999999999999987765544 455555443 358999999999974
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=9.7e-19 Score=124.21 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=81.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC----------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR---------- 73 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 73 (127)
...++++++|.+++|||||++++++.... .....++.+.....+..++. .+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999976532 22223333333334444443 68899999976554332
Q ss_pred -CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+++.+|++++|+|++++.+.+.. .++..+.+ .+.|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccC
Confidence 2357899999999999988777664 45555444 478999999999985
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=4.9e-19 Score=125.14 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=77.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeeeeEEEECCeEEEEEEEeCCCcccc--cccCC------CcccC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSYRG 79 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~------~~~~~ 79 (127)
.+|+++|.+|+|||||+|+|.+........+.. -+.....+...+. ..+.+|||+|.... ...+. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 689999999999999999999866543222222 1222223444432 25789999997331 11122 23578
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|++++|+|++++.+...+ ..|...+.... .+.|+++|+||+|+.
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 9999999999998777765 44444444332 579999999999985
No 170
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=8.2e-19 Score=104.90 Aligned_cols=119 Identities=23% Similarity=0.316 Sum_probs=93.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...+.+|+.++|-.++|||||+..+...... ...||.+.. .+.+..++ .+.+.+||.+|+...+..|..|+++.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 3468899999999999999999988865432 223444332 22344454 58899999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+|+|.+|+..|.++-.++.+.+.... ..+|+++..||.|+.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 999999999889888555555554432 679999999999974
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.80 E-value=7.5e-19 Score=109.28 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=75.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc--------cCCCcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 79 (127)
..+|+++|++|+|||||++++.+...........................+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999876532222111111111112222346789999999754332 22345788
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|++++|+|.++..+ .....+...+.. .+.|+++++||+|+.
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~--~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK--SKTPVILVLNKIDLV 124 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH--hCCCEEEEEEchhcc
Confidence 999999999987621 221344444444 268999999999986
No 172
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=6.9e-19 Score=120.94 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=80.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCcccc----cccCCCc---ccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~~---~~~ 79 (127)
.-.|+++|.+++|||||++++...+.... +..|+.....-.+.+++ ...+.+||+||.... ..+...+ ++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35789999999999999999997653322 22222111111223332 357899999997432 2233333 456
Q ss_pred CcEEEEEEeCCCh---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
++++++|+|+++. .+++.+ ..|.+++.... .+.|+++|+||+|+..
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9999999999976 567776 78887776653 4789999999999864
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.80 E-value=1.1e-18 Score=127.45 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=84.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+..+|+++|..++|||||+++|.+..+.....+..+... ...+..++. ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3668999999999999999999998877665444332222 223333322 26899999999999999888899999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|+|+++....+.. +.+ ..... .++|+++++||+|+.
T Consensus 164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKP 200 (587)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccc
Confidence 99998875433332 222 22222 479999999999985
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=3e-19 Score=117.93 Aligned_cols=113 Identities=18% Similarity=0.089 Sum_probs=80.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC------CCCce----------eeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~------~~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
+|+++|..++|||||+++++...-... ...+. +.+. ...........++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986321100 00000 1111 111222333468999999999999888
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+++.+|++++|+|.++....+. ..+...+.+ .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~--~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRK--LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccccC
Confidence 8889999999999999998755433 556666655 4789999999999874
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=5e-19 Score=125.66 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc--------cccccCCCcccC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYRG 79 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 79 (127)
+|+++|.+|+|||||+|+|.+.... ..+..++.+........++ ..+.+|||||.. .+......++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 2222222222233344444 359999999963 334445567889
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|+|..+..+... ..+...+++ .+.|+++|+||+|+..
T Consensus 79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCc
Confidence 999999999987544333 234444444 4689999999999854
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=8.5e-19 Score=130.01 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=86.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee---eeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
.+..+|+++|..++|||||+++|....+.....+..+. .+......++....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 36689999999999999999999987776443322221 122223333445789999999999999999889999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+|+++....+.. +.| ..+.. .++|+++++||+|+..
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccc
Confidence 9999999875444332 222 22332 4789999999999863
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=1.3e-18 Score=111.55 Aligned_cols=116 Identities=21% Similarity=0.133 Sum_probs=76.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc----------cccccCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRP 74 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 74 (127)
.....+|+++|.+|+|||||++++++..+...+.++.+.+........ ...+.+|||||.. .+.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 346789999999999999999999987765555555443332222111 2578999999942 3333334
Q ss_pred CcccC---CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+++. .+++++++|.+++.+... ..+...+.. .+.|+++++||+|+.+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCC
Confidence 44544 467888898776543332 122333333 4689999999999854
No 178
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=2.1e-18 Score=115.58 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=78.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCC-CC---------CCCce----------eeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFP-TD---------YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~-~~---------~~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
..+|+++|..++|||||+++++...-. .. ...+. +... ............+++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 368999999999999999999753111 00 00000 0000 112233444578999999999
Q ss_pred ccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+|.......++.+|++++|+|.++....+. ..+...... .++|+++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCC
Confidence 9888766778899999999999987643332 344444443 4789999999999864
No 179
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=2.5e-18 Score=116.74 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=74.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCccccc--------ccCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYN--------RLRPLSY 77 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 77 (127)
+.-.|+++|.+|||||||+|++++.+.......+..+... ..+... ...++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4667999999999999999999987654322111111111 111222 23679999999975432 1223356
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+|++++|+|+++.. ......+...+.. .+.|+++|+||+|+.
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLV 126 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCC
Confidence 7899999999998732 2222344444443 468999999999986
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=5.2e-18 Score=126.71 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=84.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+...|+++|..++|||||+++|....+............ ...+..++ ..+.+|||||++.|..++...++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999998777654333222222 22333443 56899999999999999988899999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+++....+.. +.| ..+.. .++|+++++||+|+.+
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccc
Confidence 99999875333332 222 22222 5799999999999853
No 181
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.77 E-value=2.2e-19 Score=113.22 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=73.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCC---cccCCcEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 83 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~ 83 (127)
+.-.|+++|++|+|||+|..+|..+...+...+. +....... .....-.+.+.|+||+.+.+..... +...+.++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4567999999999999999999998665443332 21111111 1223346899999999988764443 37889999
Q ss_pred EEEEeCCC-hHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~~lv~nK~Dl~~ 126 (127)
|||+|.+. .....++-+.++..+... ...+|+++++||+|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999874 345555535555554332 36899999999999853
No 182
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=2.2e-18 Score=110.54 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=71.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC----CCCCCC-----CCceeeeeee-EEE----------ECCeEEEEEEEeCCCccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN----KFPTDY-----IPTVFDNFSA-NVV----------AEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~----~~~~~~-----~~~~~~~~~~-~~~----------~~~~~~~~~~~D~~g~~~ 68 (127)
++|+++|..++|||||+++|+.. .+.... ..|....+.. .+. .++....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 1222222211 111 123357899999999976
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+..........+|++++|+|+++....+.. +.+. .... .+.|+++++||+|+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLI 133 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccC
Confidence 533332345678999999999875444432 2222 1221 257999999999985
No 183
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=5.6e-18 Score=105.37 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=89.5
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCC--------CC----CceeeeeeeEEEECCeEEEEEEEeCCCcccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD--------YI----PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR 71 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 71 (127)
......||+++|+.++||||++..+........ +. .|+..++-.. .+++ ...+.+++||||++|.-
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~-~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI-ELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce-EEcC-cceEEEecCCCcHHHHH
Confidence 445789999999999999999999987654211 11 1112222221 1222 24689999999999999
Q ss_pred cCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|.-+++++.+.|+++|.+.+..+ .+ ..+++.+....+ +|+++++||.||.+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~ 135 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFD 135 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCC
Confidence 999999999999999999998888 44 677777776544 99999999999975
No 184
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=6.1e-18 Score=119.25 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=77.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCCc---ccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 80 (127)
-.|+++|.+++|||||++++.+.+..- .+..|+-....-.+.++. ...+.+||+||... ...+...| ++.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 379999999999999999999865332 122221111111222221 34689999999632 22233334 4569
Q ss_pred cEEEEEEeCCCh---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCC
Q 033088 81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRG 125 (127)
Q Consensus 81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~ 125 (127)
+++++|+|+++. +.+.+. ..|..++.... .+.|++||+||+|+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 999999999864 566665 78888887754 378999999999984
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=4.8e-18 Score=126.87 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----------cccc-C
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRL-R 73 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~ 73 (127)
...||+++|.+|+|||||+|++++... ...+..|+.+.+...+..++. .+.+|||||..+ |..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998764 233334443443444555654 466999999532 1111 1
Q ss_pred CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++.+|++++|+|++++.+.+.. .+...+.. .+.|+++|+||+|+..
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCC
Confidence 2346889999999999998777775 34444443 4789999999999853
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=4.6e-18 Score=127.00 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=77.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeee-eeEEEECCeEEEEEEEeCCCccc--------ccccCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 76 (127)
...+|+++|.+++|||||+|+|++..... ...+..+... ......++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999865421 1122222111 11222333 4688999999753 22233446
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.++... .....|...++. .+.|+++|+||+|+..
T Consensus 352 ~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 789999999999976432 222456666655 6899999999999853
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.76 E-value=6.1e-18 Score=123.95 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=85.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC--CCC-----CCCC------ceeeeeee---EEEE---CCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIP------TVFDNFSA---NVVA---EGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~--~~~-----~~~~------~~~~~~~~---~~~~---~~~~~~~~~~D~~g 65 (127)
.+...+++++|..++|||||+.+|+... ... .+.. ..+.+... .+.. ++..+.+++|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 3456799999999999999999998632 111 1100 11111111 1111 45578899999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+|...+..+++.+|++++|+|+++....+.. ..|..... .++|+++|+||+|+..
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPA 140 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCc
Confidence 999998888899999999999999987666664 55655443 4789999999999853
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=9.5e-18 Score=111.60 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=82.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCCcccccc--------cCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNR--------LRPL 75 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~~~~--------~~~~ 75 (127)
..+.--|+++|.+++|||||+|++++.+..-.+....++..... +...+ ..++.+.||||-..-.. ....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 34567799999999999999999999876544333333333222 22333 56899999999544322 2233
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~~ 127 (127)
.+.++|+++||+|+.....-.+ +..++.+++ .+.|++++.||+|..++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~ 129 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKP 129 (298)
T ss_pred HhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCc
Confidence 4689999999999887543332 566666666 57899999999997653
No 189
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=1.2e-17 Score=109.11 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=78.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCC------CCce------eeeee---eEEEEC--------CeEEEEEEEeCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFP--TDY------IPTV------FDNFS---ANVVAE--------GTTVNLGLWDTA 64 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~--~~~------~~~~------~~~~~---~~~~~~--------~~~~~~~~~D~~ 64 (127)
+|+++|..++|||||+.+|+...-. ... ..+. +.+.. ...... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999753211 000 0000 00000 011112 346789999999
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+.+|......+++.+|++++|+|+.+..+.+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t--~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT--ETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCcc
Confidence 999999888889999999999999998766655 333333333 368999999999975
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=1.2e-17 Score=121.98 Aligned_cols=112 Identities=21% Similarity=0.141 Sum_probs=78.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC----ceeeeeeeEEEE-------------CCeEEEEEEEeCCCcccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVA-------------EGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~D~~g~~~~ 69 (127)
+..-|+++|..++|||||+++|.+..+...... +.+..+...-.. +.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345699999999999999999998876543222 112111110000 001123889999999999
Q ss_pred cccCCCcccCCcEEEEEEeCCCh---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..++..+++.+|++++|+|+++. +++..+ ..++. .++|+++++||+|+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~--~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM--YKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH--cCCCEEEEEECCCcc
Confidence 99888899999999999999874 343332 22332 478999999999985
No 191
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=1.7e-17 Score=121.45 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=83.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc--CCCCCCC------------CCceeeee-eeEEEECCeEEEEEEEeCCCcccccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 71 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~--~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~ 71 (127)
...||+++|..++|||||+++|+. +.+.... ..+.+.+. .....+....+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999986 3333221 11122222 22233344557899999999999999
Q ss_pred cCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+..+++.+|++++|+|+.+....+. ..++..+.. .++|.++++||+|+..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~ 134 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPG 134 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCC
Confidence 88999999999999999987654444 333344333 4789999999999853
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=1.7e-17 Score=102.22 Aligned_cols=109 Identities=22% Similarity=0.212 Sum_probs=75.8
Q ss_pred EECCCCCcHHHHHHHHhcCCCCC-CCCCc-eeeeeeeEEEECCeEEEEEEEeCCCcccccccCC-------CcccCCcEE
Q 033088 13 TVGDGAVGKTCMLICYTSNKFPT-DYIPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 83 (127)
Q Consensus 13 iiG~~~~GKssl~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~~ 83 (127)
++|+.|+|||||++++.+..... ..... ...........+. ...+.+||+||...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999765542 22222 2222222222221 45799999999877654433 367899999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|+|..+..+.... . |...... .+.|+++++||+|+..
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCC
Confidence 999999988766664 3 4444443 5899999999999864
No 193
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.2e-19 Score=108.27 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=88.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC---CC----CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK---FP----TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY 77 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 77 (127)
....+.++|+|..++|||||+....... +. .+..+|.+-.. -.+.+. ...+.+||.+||+..+++|..|+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 3456789999999999999998765432 11 12223333221 122333 35799999999999999999999
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
..+|++|+++|+++++.++.....+-+.+.+- ..++|+++.+||.|+++
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 99999999999999999999844444444432 37999999999999875
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=118.11 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=78.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC-CCCCC-ceeeeeeeEEEECCeEEEEEEEeCCCccccccc-----------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL----------- 72 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------- 72 (127)
...++|+++|.+++|||||++++++.... ....+ ++.......+..++ ..+.+|||||..+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999976432 22222 22222222333344 45789999996432221
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
...+++.+|++++|+|++++.+.+.. .+...+.+ .+.|+++++||+|+.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCC
Confidence 12357889999999999988776664 44454444 468999999999985
No 195
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.4e-18 Score=104.16 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=91.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.-|++++|-.|+|||||++.+.+++.. ...||.-.+ +....+.+ .++..+|.+|+...+..|+.|+..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 35679999999999999999999887653 334444221 22344554 578999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~~ 127 (127)
.+|+.+.+.+++...++-..+.-. -.++|+++.+||+|.+.+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999999999999833333333222 268999999999998753
No 196
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=8.6e-18 Score=108.28 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=71.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-eeee-EEEEC-CeEEEEEEEeCCCcccccccC-----CCcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSA-NVVAE-GTTVNLGLWDTAGQEDYNRLR-----PLSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~D~~g~~~~~~~~-----~~~~~~ 79 (127)
++||+++|++|+|||||+|.+++.........+.+. .... ...+. .....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986554322222221 1111 11111 112368999999975432211 223677
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|+++++.+. ++......|++.+.+. +.|+++|+||+|+-
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccch
Confidence 8998887432 2444445677777664 67999999999984
No 197
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=6.8e-18 Score=110.56 Aligned_cols=114 Identities=24% Similarity=0.369 Sum_probs=75.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC---CceeeeeeeEEEECCeEEEEEEEeCCCccccccc-----CCCcccCCc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----RPLSYRGAD 81 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~~ 81 (127)
||+++|+++|||||+.+.++.+-.+.+.. +|...+ ...+... ..+.+++||+||+..+... ....|++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999998888665443321 222222 1122222 2468999999999765443 455689999
Q ss_pred EEEEEEeCCChH---HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRA---SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|+|+|+.+.+ ..... ...+..+.+.+|++.+.++.+|.|+..
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 999999998433 34444 677777778889999999999999853
No 198
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.74 E-value=2.2e-17 Score=120.81 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=79.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC---CCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
+.|+++|..++|||||+++|.+. .+.+++....+.... ..+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 333343333333322 2234444 68999999999999887777889999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
+|+|+++....+. .+.+..+.. .++| +++|+||+|+.+
T Consensus 79 LVVDa~~G~~~qT--~ehl~il~~--lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 79 LVVDADEGVMTQT--GEHLAVLDL--LGIPHTIVVITKADRVN 117 (581)
T ss_pred EEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEECCCCCC
Confidence 9999987422222 122223332 3577 999999999864
No 199
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.74 E-value=8.4e-21 Score=118.04 Aligned_cols=120 Identities=29% Similarity=0.497 Sum_probs=103.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-E-EEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-N-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..-+|+.|+|+.++|||+++.++....|...|..+++..+.- . -..+.+.+++++||..||++|..+...|++++++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 346899999999999999999999998888888888877732 2 23345668899999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~~ 126 (127)
++|||+++...|... ..|...+.... ..+|+++..||||++.
T Consensus 103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 999999999999998 99999987643 4578999999999874
No 200
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=7.4e-17 Score=108.65 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=75.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC----------CCCceee-eeeeEEEECCeEEEEEEEeCCCcccc------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFD-NFSANVVAEGTTVNLGLWDTAGQEDY------ 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~------ 69 (127)
-.++|+++|++|+|||||+|++++..+... ..+|... .+...+..++..+.+.+|||||-.+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 2233322 22334555677789999999994321
Q ss_pred --------------------cccCCCccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 70 --------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 70 --------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+...++ .+|+++++++.+.. ........+++.+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCC
Confidence 111223444 46677777776542 222222344555543 689999999999843
No 201
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=1.8e-17 Score=102.50 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=71.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCccccc------ccCCCcc--cC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSY--RG 79 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~ 79 (127)
++|+++|.++||||||+|++.+.+......|..+.+.. ..+..++ ..+.++|+||..... .....++ ++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999998755444443333332 2445555 579999999954322 2223333 68
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
.|++++|.|+++.+.-. .+..++.+ -+.|++++.||+|+
T Consensus 79 ~D~ii~VvDa~~l~r~l----~l~~ql~e--~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL----YLTLQLLE--LGIPVVVVLNKMDE 117 (156)
T ss_dssp SSEEEEEEEGGGHHHHH----HHHHHHHH--TTSSEEEEEETHHH
T ss_pred CCEEEEECCCCCHHHHH----HHHHHHHH--cCCCEEEEEeCHHH
Confidence 99999999998754332 33344444 37999999999996
No 202
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.1e-17 Score=115.77 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=77.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeeeeEEEECCeEEEEEEEeCCCccccc-------ccCCCcccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-------RLRPLSYRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 80 (127)
-.|.++|.+++|||||+|++.+.+......| |+-....-.+.... ...+.++|+||...-. ......++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3789999999999999999997654322112 22111111222222 2358999999964311 1111247889
Q ss_pred cEEEEEEeCC---ChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
+++++|+|++ +...+... ..|++++.... .+.|+++|+||+|+..
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 9999999988 44566665 78888877654 4689999999999853
No 203
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=8.3e-18 Score=104.90 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=65.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc-----ccccCCCcccCCcEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-----YNRLRPLSYRGADVFV 84 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~~~~~~~~~~~~~i 84 (127)
+|+++|.+++|||||++++.+.. ... ..+... ..+.. .+||+||... +..+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~~v------~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQAV------EFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccceEE------EECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEEE
Confidence 79999999999999999977543 211 122221 12221 2699999732 2222 22368999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|.++.+++. ..|+..+. .+.|+++++||+|+.+
T Consensus 70 ~v~d~~~~~s~~---~~~~~~~~---~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 70 YVHGANDPESRL---PAGLLDIG---VSKRQIAVISKTDMPD 105 (158)
T ss_pred EEEeCCCccccc---CHHHHhcc---CCCCeEEEEEccccCc
Confidence 999999887653 33444432 4678999999999853
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=3.8e-17 Score=116.04 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=76.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCC--CC-------------CC--------C------ceeeee-eeEEEEC
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFP--TD-------------YI--------P------TVFDNF-SANVVAE 52 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~-------------~~--------~------~~~~~~-~~~~~~~ 52 (127)
|.....++|+++|..++|||||+++|+...-. .. .. . ..+.+. .....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 34567899999999999999999999843111 00 00 0 001111 1112233
Q ss_pred CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....+.+|||||+++|.......++.+|++++|+|+++..++......++..+.. ....|+++++||+|+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAV 152 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccc
Confidence 34568999999999888665555578999999999998721221211223333332 1224699999999985
No 205
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=1.3e-17 Score=106.67 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=79.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC-----------Cc-----eeeee-eeEEEE--CCeEEEEEEEeCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----------PT-----VFDNF-SANVVA--EGTTVNLGLWDTAGQE 67 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-----------~~-----~~~~~-~~~~~~--~~~~~~~~~~D~~g~~ 67 (127)
+.++|+++|..++|||||+.+|+......... .. .+.+. ...... +.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46899999999999999999998543211100 00 00000 111122 2445689999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|.......++.+|++|+|+|+.+....+. ...+..+.. .++|++++.||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccch
Confidence 988877778999999999999987755444 455555555 478899999999984
No 206
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=4.9e-17 Score=113.49 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=78.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc---------cccCCCcc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSY 77 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 77 (127)
..|+++|.+|+|||||+|||.+.+.. ..+..++-+.........+. .+.+.||+|-+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987654 33333333333344444443 4899999996532 22334457
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+||+++||+|....-+-.+ +...+.+++ .+.|+++|.||+|-.
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCc
Confidence 89999999999877544444 455555553 579999999999964
No 207
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=7.2e-17 Score=115.43 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=74.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCccc----cccc---CCCcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRL---RPLSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~---~~~~~~~ 79 (127)
..+|+++|.+++|||||+++|...+..-. +..|+-....-.+..++ ..+.+||+||... ...+ .-..++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46799999999999999999997654322 22222111112233333 5799999999532 1111 1123577
Q ss_pred CcEEEEEEeCCCh----HHHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~~lv~nK~Dl~~ 126 (127)
++++++|+|+++. ..+... ..|..++.... .+.|++||+||+|+..
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 9999999999753 334443 45555554332 3689999999999853
No 208
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.71 E-value=6.1e-17 Score=115.00 Aligned_cols=119 Identities=12% Similarity=0.015 Sum_probs=76.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--CCCCC-----------------------------CCCceeeeeeeEEEECC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-----------------------------YIPTVFDNFSANVVAEG 53 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (127)
....++|+++|..++|||||+.+|+.. ..... .....+.+.. ...+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEcc
Confidence 456799999999999999999999852 21110 0001111111 122233
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
....+.+||+||+++|.......++.+|++++|+|+++.++..... ..+.... +.....|+++++||+|+.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSV 154 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhcc
Confidence 3568999999999988765556678999999999999874332110 1122222 222345799999999985
No 209
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=4.5e-17 Score=117.82 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=81.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCC-CCC-------C-CC-c----------eeeee-eeEEEECCeEEEEEEEe
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF-PTD-------Y-IP-T----------VFDNF-SANVVAEGTTVNLGLWD 62 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~-~~~-------~-~~-~----------~~~~~-~~~~~~~~~~~~~~~~D 62 (127)
+..+..+|+++|..++|||||+++++...- ... . .. + .+... .....+....+.+.+||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 345788999999999999999999974111 000 0 00 0 01111 11122333357899999
Q ss_pred CCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||+.+|......+++.+|++|+|+|+++....+. ..++..... .++|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence 99999988877778899999999999987643332 445555444 5799999999999864
No 210
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1e-17 Score=100.46 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=93.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.++..+++++|-.|+|||+++.++.-+... ...||++.... .+..+.+++++||..|+-..+..|+.|+.+++++|
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 347899999999999999998877655543 34555543321 22336689999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|+|.+|+.....+..+++.++.+.- .+.-++|++||.|.+
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 99999999888777677777776643 567899999999975
No 211
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=6.6e-17 Score=95.91 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=67.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc---------cccCCCccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSYR 78 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 78 (127)
+|+++|.+|+|||||+|.|++..... ....++..........++. .+.++||||-... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999754321 1122221111223344554 4579999995321 111222347
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK 121 (127)
.+|++++|+|..++.. +....+++.++ .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~--~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT--EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH--HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC--HHHHHHHHHHh---cCCCEEEEEcC
Confidence 8999999999777322 22245555563 68999999998
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.71 E-value=9.2e-17 Score=117.59 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=81.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCCCC------------Cceeeee-eeEEEECCeEEEEEEEeCCCcccccccC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR 73 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 73 (127)
.+|+++|..++|||||+++|+. +.+..... ...+.+. .....+......+.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4799999999999999999986 33322110 0011111 1112223334789999999999998888
Q ss_pred CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++.+|++++|+|+.+....+. ..|+..+.. .++|+++++||+|+.+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~--~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALE--LGLKPIVVINKIDRPS 130 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHH--CCCCEEEEEECCCCCC
Confidence 889999999999999987543333 566666655 4789999999999853
No 213
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=8.1e-17 Score=108.18 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC------Cce----------eeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~------~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
+|+++|.+|+|||||+++++......... .+. .... ............+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532211000 000 0000 011112223467899999999888777
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+++.+|++++|+|.++....... ..| ..+.. .++|.++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCC
Confidence 77889999999999999886555442 333 33433 4789999999999864
No 214
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=1.3e-16 Score=107.22 Aligned_cols=113 Identities=17% Similarity=0.037 Sum_probs=76.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-----CC-Cce----------eeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTD-----YI-PTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~-----~~-~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
+|+++|..++|||||+++++...-... .. .+. +.+. ...........++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211100 00 000 0011 001111122467899999999988888
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+..+++.+|++++|+|..+...-+. ..++..+.. .+.|++++.||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 8889999999999999987644333 344444444 4689999999999863
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.70 E-value=2.3e-16 Score=115.42 Aligned_cols=113 Identities=22% Similarity=0.225 Sum_probs=77.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC----ceeeeeeeEEEE---CCeE-----E-----EEEEEeCCCccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVA---EGTT-----V-----NLGLWDTAGQED 68 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~~~D~~g~~~ 68 (127)
.++..|+++|..++|||||++++.+......... +.+..+...-.. .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4556799999999999999999986654322221 222211110000 0111 1 268999999999
Q ss_pred ccccCCCcccCCcEEEEEEeCCC---hHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|..++...++.+|++++|+|+++ ++++..+ . .+.. .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCc
Confidence 99888888899999999999987 4444443 2 2222 478999999999984
No 216
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=1.3e-16 Score=115.50 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=81.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhc-CCCCCCC-----C----Cce----------eeee-eeEEEECCeEEEEEEEe
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTS-NKFPTDY-----I----PTV----------FDNF-SANVVAEGTTVNLGLWD 62 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~-~~~~~~~-----~----~~~----------~~~~-~~~~~~~~~~~~~~~~D 62 (127)
+..+..+|+++|..++|||||+++++. ....... . .+. +.+. .....++...+.+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 446788999999999999999999863 1111100 0 000 1111 11233344457899999
Q ss_pred CCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|||+.+|......+++.+|++|+|+|.++....+. ..+++.++. .++|+++++||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccc
Confidence 99999888766678899999999999987532222 445555444 578999999999985
No 217
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.70 E-value=8.9e-16 Score=101.24 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc-------cCCCcccCCc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 81 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 81 (127)
+++++|++|+|||||++++.+...... +..++.......+..++ ..+++||+||...... ....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998654322 22222111122233443 5789999999754321 2234688999
Q ss_pred EEEEEEeCCChH
Q 033088 82 VFVLAFSLVSRA 93 (127)
Q Consensus 82 ~~i~v~d~~~~~ 93 (127)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 218
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.70 E-value=9.3e-17 Score=104.27 Aligned_cols=113 Identities=16% Similarity=0.032 Sum_probs=69.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-CC-C----------------C-Cc----------eeeee-eeEEEECCeEEEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFP-TD-Y----------------I-PT----------VFDNF-SANVVAEGTTVNLG 59 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~-~~-~----------------~-~~----------~~~~~-~~~~~~~~~~~~~~ 59 (127)
+|+++|.+++|||||+++|+...-. .. . . .+ .+.+. ...........++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999753211 10 0 0 00 00000 00111122234788
Q ss_pred EEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 60 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|||||+.+|.......++.+|++++|+|+++...-+. ......+.. ....++++|+||+|+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~-~~~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSL-LGIRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHH-cCCCcEEEEEEchhcc
Confidence 99999998876655567889999999999987532222 222222222 1224578899999985
No 219
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=6.3e-16 Score=115.93 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=76.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC----------CCcc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------PLSY 77 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------~~~~ 77 (127)
.++|+++|.+|||||||+|++.+.+......+..+.+ .+....+....++.+||+||..++.... ..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 5789999999999999999998766543333322222 2222334445679999999987764321 1232
Q ss_pred --cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+|++++|+|.++.++.. .|..++.+ .+.|+++++||+|+.
T Consensus 82 ~~~~aD~vI~VvDat~ler~l----~l~~ql~e--~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL----YLTLQLLE--LGIPCIVALNMLDIA 125 (772)
T ss_pred hccCCCEEEEEecCCcchhhH----HHHHHHHH--cCCCEEEEEEchhhh
Confidence 4799999999998865432 23344444 479999999999985
No 220
>PRK13351 elongation factor G; Reviewed
Probab=99.69 E-value=7.8e-17 Score=120.18 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=82.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC--------C-----C-------CCCceeeeeeeEEEECCeEEEEEEEeCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP--------T-----D-------YIPTVFDNFSANVVAEGTTVNLGLWDTA 64 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~--------~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (127)
.++..+|+++|..++|||||+++|+...-. . . +..|.... ..........+++||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~---~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA---ATSCDWDNHRINLIDTP 81 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc---eEEEEECCEEEEEEECC
Confidence 346789999999999999999999853210 0 0 01111111 11122234689999999
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|+.+|......+++.+|++++|+|.++..+.+.. ..| ..+.. .++|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCC
Confidence 9999988888899999999999999987666653 444 44444 4789999999999864
No 221
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.69 E-value=2e-16 Score=98.53 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=69.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCCccc----------ccccCCCccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNRLRPLSYR 78 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 78 (127)
.|+++|.+|+|||||++.+.++.+.+...++.+.+.... ...++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999997666655555443332222 22222 789999999432 2333333443
Q ss_pred ---CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 79 ---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 79 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+++++++|..+..+... ......+.. .+.|+++++||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~--~~~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE--LGIPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH--cCCCEEEEEEchhcC
Confidence 4578889999876532222 122233333 258999999999984
No 222
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=3.9e-16 Score=109.27 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=79.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC--------CCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 76 (127)
..+|++++|.||+|||||+|.|++..-. .....|+-+.....+.++| +++.+.||+|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4689999999999999999999986443 2222333344455566676 679999999975432221 234
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++||.+++|+|.+.+.+-.. ...+. ....+.|+++|.||.||..
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d--~~~~~---~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKED--LALIE---LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhh--HHHHH---hcccCCCEEEEEechhccc
Confidence 789999999999998633333 22222 2336799999999999975
No 223
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=4.7e-16 Score=100.64 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=70.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCC--CCCceeeeeee-EEE-------------------E----C--C----
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKF---PTD--YIPTVFDNFSA-NVV-------------------A----E--G---- 53 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~---~~~--~~~~~~~~~~~-~~~-------------------~----~--~---- 53 (127)
++|.++|..++|||||+..+..... ..+ ...+....+.. ... . . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999864311 111 11111111100 000 0 0 0
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
....+.+|||||++.+.......+..+|++++|+|++++...... ...+..+.. ....|+++++||+|+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~-~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEI-MGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHH-cCCCcEEEEEEchhccC
Confidence 125789999999998877777778889999999999863111111 112222222 12347999999999864
No 224
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.2e-15 Score=98.09 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=75.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCC------CC-----CC---ceeeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT------DY-----IP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~------~~-----~~---~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
.++|+++|..++|||||+++|+...... .+ .+ ..+.+. ............+.+.||||+.+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999998531000 00 00 011111 111222333457889999999888776
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
....+..+|++++|+|+.....-+. ...+..+.+ .+.| ++++.||+|+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQ--VGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCcEEEEEeCCCCC
Confidence 6777889999999999987543333 344445544 3566 78999999984
No 225
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.66 E-value=1.1e-15 Score=112.18 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCccccccc------CCCcc--cCCcEEEE
Q 033088 15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFVL 85 (127)
Q Consensus 15 G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 85 (127)
|++|+|||||+|++.+......+.+..+.+.. ..+..++ ..+++|||||+.++... .+.++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765444454443332 2344444 35799999999876543 23333 47899999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|+|.++.+.. ..+..++.+ .+.|+++++||+|+.
T Consensus 79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEA 112 (591)
T ss_pred EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHH
Confidence 9999875432 223333333 479999999999974
No 226
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=1.2e-15 Score=113.87 Aligned_cols=118 Identities=16% Similarity=0.038 Sum_probs=80.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC----CCCC--ce----------eeee-eeEEEECCeEEEEEEEeCCCcc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT----DYIP--TV----------FDNF-SANVVAEGTTVNLGLWDTAGQE 67 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~----~~~~--~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~ 67 (127)
.++..+|+++|..++|||||+++|+...-.. .... +. +.+. ............+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3457799999999999999999997421110 0000 00 1111 0111111124679999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++......+++.+|++++|+|+.+....+. ..++..+.+ .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANR--YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 888777888999999999999988655554 334444444 4689999999999864
No 227
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-15 Score=101.45 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc------------ccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED------------YNR 71 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------------~~~ 71 (127)
++++...|+++|.+++|||||.|.+.+.+..+......+++.....-+.....++.++||||.-. +..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 45788999999999999999999999998877655554444444333444456899999999422 111
Q ss_pred cCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....+..||++++|+|+++....-. ...+..+++. .++|-++|.||+|..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKL 198 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcc
Confidence 22334678999999999996322211 3444444443 479999999999975
No 228
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=2e-15 Score=98.78 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=70.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--C--------------C-------CCCce------eeee-eeEEEECCeEEEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFP--T--------------D-------YIPTV------FDNF-SANVVAEGTTVNLG 59 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~--~--------------~-------~~~~~------~~~~-~~~~~~~~~~~~~~ 59 (127)
+|+++|..++|||||+.+|+...-. . . ..... +.+. .....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999988642110 0 0 00000 0000 01112222346799
Q ss_pred EEeCCCcccccccCCCcccCCcEEEEEEeCCChH-------HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 60 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+||+||+.+|.......++.+|++++|+|+++.. ..+.. ..| .... .....|+++++||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEccccc
Confidence 9999999887766666678899999999998742 11221 222 2222 22346899999999986
No 229
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.62 E-value=2e-15 Score=113.04 Aligned_cols=117 Identities=19% Similarity=0.073 Sum_probs=79.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC---------------CCCC---CCCceeeee-eeEEEECCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK---------------FPTD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g 65 (127)
.....||+++|..++|||||+++|+... +.+. +..|..... ......+...+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3456899999999999999999997521 1110 111221111 11122455568899999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+|.......++.+|++++|+|+.+....+.. ..|. .+.+ .+.|.++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhcc
Confidence 999887777889999999999998875433332 2332 2322 467889999999985
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.61 E-value=4e-15 Score=97.58 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=73.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-----------------------eeeeeeE--------------EEEC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----------------------FDNFSAN--------------VVAE 52 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~-----------------------~~~~~~~--------------~~~~ 52 (127)
|++++|..++|||||+.+|..+.+.+...... +.+.... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999766643211110 0000000 0001
Q ss_pred CeEEEEEEEeCCCcccccccCCCcc--cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....+.+.|+||+++|.......+ ..+|++++|+|+.....-+. ..++..+.. .++|++++.||+|+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~--~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALA--LNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEECcccc
Confidence 1134688999999988865433334 36899999999887644333 456666655 468999999999985
No 231
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=7.3e-15 Score=93.20 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=81.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCCc----------ccccccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQ----------EDYNRLRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~----------~~~~~~~~ 74 (127)
....-|+++|.+++|||||+|.+++.+-......|.+.+.... +.+++. +.+.|.||- +.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 4567899999999999999999999876566666666555443 334442 789999993 23344444
Q ss_pred CcccC---CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.|++. -.++++++|......-.+ .+.++.+.. .++|+++++||+|...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~--~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLE--LGIPVIVVLTKADKLK 149 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEccccCC
Confidence 55543 467888888876544333 467777766 6899999999999754
No 232
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.61 E-value=4.7e-15 Score=101.73 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=56.4
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCCh----------HHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLG 123 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~D 123 (127)
.+.+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....|...+.... .+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 455555344444443322 6899999999999
Q ss_pred CC
Q 033088 124 RG 125 (127)
Q Consensus 124 l~ 125 (127)
+-
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 63
No 233
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=9.1e-15 Score=107.63 Aligned_cols=111 Identities=22% Similarity=0.218 Sum_probs=72.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc---CCCCCCC--CCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTS---NKFPTDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
-|.++|..++|||||+++|.+ ..+.++. ..|+...+.. ....+ ...+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~-~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY-WPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEE-EecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 478999999999999999985 2333332 2233222221 11111 235899999999998665556688999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
+|+|+++...-+. .+.+..+.. .++| +++|+||+|+.+
T Consensus 80 LVVda~eg~~~qT--~ehl~il~~--lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 80 LVVACDDGVMAQT--REHLAILQL--TGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEECCccCC
Confidence 9999887433222 233333333 2455 579999999864
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=99.60 E-value=1.2e-14 Score=102.45 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=75.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC------CC--CC------ceeeee-eeEEEECCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT------DY--IP------TVFDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~------~~--~~------~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
..+.++|+++|..++|||||+++|+...... .+ .. ..+.+. ............+.++||||+.+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 4568999999999999999999998621000 00 00 001111 111222233456889999999887
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLGRG 125 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~-lv~nK~Dl~ 125 (127)
.......+..+|++++|+|+.+....+. .+++..+.. .++|.+ ++.||+|+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCc
Confidence 6655566788999999999987543333 344444443 467855 679999985
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=1.1e-14 Score=102.69 Aligned_cols=117 Identities=20% Similarity=0.168 Sum_probs=75.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC-------C---------CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-------F---------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
..+.++|+++|..++|||||+++|+... + .++.....+.. .....+......+.+|||||+++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~-~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN-TAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee-eEEEEEcCCCEEEEEEECCchHH
Confidence 4568999999999999999999997320 0 00000101111 11223333445789999999998
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLGRGT 126 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~-lv~nK~Dl~~ 126 (127)
|..........+|++++|+|+......+. .+.+..+.. .++|.+ +++||+|+.+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCC
Confidence 86554445678899999999987533333 233334443 357755 6899999853
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.59 E-value=1.5e-14 Score=102.36 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=77.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC----------------CCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP----------------TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
....++|+++|..++|||||+++|+...-. .+........ ...........++.+.||||+.+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~-~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN-TAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE-ccEEEEccCCeEEEEEECCChHH
Confidence 356799999999999999999999864111 0000111100 01112222335678999999988
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
|.......+..+|++++|+|+.....-+. .+.+..+.. .++| ++++.||+|+.+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~--~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQ--VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEccCCCC
Confidence 76665666789999999999886543333 344444444 3678 778999999864
No 237
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.2e-14 Score=102.33 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=76.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC---C---CC--------Cceeeee-eeEEEECCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---D---YI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~---~---~~--------~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
..+.++|+++|..++|||||+++|++..... . +. ...+.+. .....+......+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998531100 0 00 0001111 111223233456889999999888
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
......-+..+|++++|+|+......+. .+++..+.. .++| +++++||+|+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~--~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQ--VGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCEEEEEEEecCCc
Confidence 6655555678999999999887533333 344444444 3677 67899999985
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=1.2e-14 Score=104.20 Aligned_cols=118 Identities=21% Similarity=0.163 Sum_probs=78.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC------CCCCC--------CCceeeee-eeEEEECCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
....++|+++|..++|||||+++|+... ....+ ....+.+. ............+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3467999999999999999999998521 11110 00001111 011112223357889999999988
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
.......+..+|++++|+|+.+....+. .+++..+.. .++| ++++.||+|+.+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccC
Confidence 7665666788999999999987654444 344444444 3677 788999999854
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=5.5e-15 Score=104.46 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=74.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC---CCC--CCceeeee-----------------eeEEEECC------eEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP---TDY--IPTVFDNF-----------------SANVVAEG------TTVN 57 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~---~~~--~~~~~~~~-----------------~~~~~~~~------~~~~ 57 (127)
+..++|+++|..++|||||++.+...... ++. .-|....+ ......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999998643211 110 01111110 00000011 1357
Q ss_pred EEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+||+||+++|..........+|++++|+|+++.. ..+. .+.+..+.. ....|+++++||+|+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt--~e~l~~l~~-~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT--KEHLMALEI-IGIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch--HHHHHHHHH-cCCCeEEEEEEccccCC
Confidence 899999999999877777778899999999998643 2222 222233322 12246899999999864
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2.5e-15 Score=99.16 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=81.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee--eeEEEECCeEEEEEEEeCCCccc-------ccccCCCc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF--SANVVAEGTTVNLGLWDTAGQED-------YNRLRPLS 76 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~ 76 (127)
..+++++++|..|+|||||+|.++.+...+...-..+.+. .....+++ -.+.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 4689999999999999999999997655443221111111 11223344 3588999999655 55666777
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~~ 127 (127)
+.+.|.++++.++.++.---. ..++..+....-+.+++++.|.+|...|
T Consensus 115 l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred hhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 889999999999988753333 3444444443445899999999998765
No 241
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=1.2e-14 Score=108.58 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=79.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC-C----CC-C----------ceeeee---eeEEEECCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-D----YI-P----------TVFDNF---SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~----~~-~----------~~~~~~---~~~~~~~~~~~~~~~~D~~g 65 (127)
..+..+|+++|..++|||||+++|+...-.. . .. . ..+.+. ...+..+ ...+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence 3467899999999999999999997421100 0 00 0 001111 1112222 35789999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.++.......++.+|++++|+|+......+. ...+..+.+ .+.|++++.||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 98888888888999999999999987654444 344444444 4689999999999863
No 242
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=2.8e-14 Score=94.80 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc---c------
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---L------ 72 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~------ 72 (127)
.....++|+++|.+|+|||||+|.+++...... ..+++..........++ ..+.+|||||-..... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 345689999999999999999999998764322 11222111112222333 5789999999654411 0
Q ss_pred -CCCccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCCCCC
Q 033088 73 -RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLGRGTP 127 (127)
Q Consensus 73 -~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~~lv~nK~Dl~~~ 127 (127)
...++. ..|++++|..++.. .+.......++.+.+... -.++++|.||+|...|
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 122332 56888888766532 111111344444443221 2469999999998643
No 243
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.57 E-value=5.7e-14 Score=95.19 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCccccccc-------CC
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RP 74 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~ 74 (127)
+....++|+++|.+|+||||++|++++..... ...+............+ ...+.++||||..+.... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 44578999999999999999999999865321 11111111111112223 367999999996643211 11
Q ss_pred Ccc--cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 75 LSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
.++ ...|++++|..++.. .+.......++.+.... --.+++|+.|++|...
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 112 268999999665422 12111123333333322 1246999999999653
No 244
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.57 E-value=4.8e-14 Score=98.72 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=81.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----------ccc-cC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNR-LR 73 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~ 73 (127)
..+||+++|.|++|||||+|++++....- ....|+-+.....+..++ ..+.+.||+|..+ |.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999864431 122233333344455555 3688999999532 221 11
Q ss_pred CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...++.+|++++|.|++.+-+-++ ......+.+ .+.+++++.||+|+-+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVE 303 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCC
Confidence 234678999999999998877777 466666666 5789999999999754
No 245
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=2.5e-14 Score=101.24 Aligned_cols=121 Identities=13% Similarity=0.040 Sum_probs=73.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCC---CCC--CCCceeeeee-----------------eEEEEC------Ce
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKF---PTD--YIPTVFDNFS-----------------ANVVAE------GT 54 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~---~~~--~~~~~~~~~~-----------------~~~~~~------~~ 54 (127)
..+...++|+++|..++|||||+.+|.+... .++ ...|....+. .....+ ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 4567789999999999999999998854211 111 1112211110 000000 01
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+.+||+||+++|..........+|++++|+|++++. ..+.. +. +..+.. ....|+++|+||+|+.+
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~-l~~l~~-~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EH-LMALDI-IGIKNIVIVQNKIDLVS 153 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HH-HHHHHH-cCCCcEEEEEEeecccc
Confidence 257899999999888665444456679999999998643 22221 22 222222 12236899999999864
No 246
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.55 E-value=6.4e-14 Score=83.49 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=67.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC-CceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
+|++++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777754433 3222 3344456778889999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+..+..++..+ |...+.... .++|.++++||.|+.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhH
Confidence 99999988663 766665433 578999999999984
No 247
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.2e-14 Score=92.58 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=78.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCccc---CCcEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADVFV 84 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 84 (127)
.-.|+++|+.+||||+|.-++..+.+.....+... ..-...++.. ...+.|.||+.+.+.....++. .+-++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 35799999999999999999998855433222111 1112222222 3789999999988776666665 789999
Q ss_pred EEEeCCCh-HHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSR-ASYENVLKKWIPELQHY---SPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~p~~lv~nK~Dl~ 125 (127)
||+|...- ....++-+.++..+... ...+|++++.||.|+-
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99997642 33444435555555443 3678999999999984
No 248
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.54 E-value=2.9e-14 Score=98.68 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCCh----------HHHHHHHHHHHHHHhhh-CCCCCEEEEeecCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHY-SPGVPVVLVGTKLG 123 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~D 123 (127)
...+.+||.+|+...+..|..++.++++++||+|+++- ..+.+....|...+... ..+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 35688999999999999999999999999999999862 35556534444444332 26899999999999
Q ss_pred CC
Q 033088 124 RG 125 (127)
Q Consensus 124 l~ 125 (127)
+-
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 73
No 249
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=6.1e-14 Score=104.84 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=78.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCC----CC------------Cceeeee---eeEEEECCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----YI------------PTVFDNF---SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~----~~------------~~~~~~~---~~~~~~~~~~~~~~~~D~~g 65 (127)
.++..+|+++|..++|||||+++|+...-... .. ...+.+. ...+..+ ...+.+.||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 45678999999999999999999974211000 00 0000111 1112222 35789999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+|.......++.+|++++|+|+......+. ...+..+.+ .+.|.+++.||+|+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 98877666667889999999999887655555 334444444 4688999999999864
No 250
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.9e-13 Score=92.29 Aligned_cols=118 Identities=21% Similarity=0.202 Sum_probs=77.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc--cccc------CCCcc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--YNRL------RPLSY 77 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~------~~~~~ 77 (127)
.....++|-|.||||||||++.+.+.+..-..-|.++.. -..-.+.....++|+.||||.-+ ...+ ....+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~-i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKG-IHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccc-eeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 356789999999999999999999876653322322111 11122233456899999999422 1111 11122
Q ss_pred c-CCcEEEEEEeCCChH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 78 R-GADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 78 ~-~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+ -.++++|++|.+... +...- ..++..++.... .|+++|.||+|+.+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIAD 294 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccc
Confidence 2 368899999988543 34443 677777777665 89999999999763
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=99.54 E-value=1.2e-13 Score=97.50 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=77.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC----------------CCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP----------------TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
....++|+++|..++|||||+++|+..... ++........ ............+.+.||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~-~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN-TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe-eeEEEEcCCCeEEEEEECCCHHH
Confidence 356899999999999999999999863110 0001111111 11122222345688999999988
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~-lv~nK~Dl~ 125 (127)
|.......+..+|++++|+|+......+. ..++..+.. .++|.+ ++.||+|+.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~--~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHH--cCCCEEEEEEeecCCc
Confidence 76666667789999999999987543333 344455554 367875 689999985
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.52 E-value=1.8e-13 Score=97.70 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=75.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC------CC----------CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN------KF----------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
....++|+++|-.++|||||+++|.+. .. .++........ .....+.....++.+.||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccc
Confidence 346799999999999999999999622 00 00000111111 11122333345788999999988
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
|......-+..+|++++|+|......-+. .+.+..+.. .++| ++++.||+|+.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv 190 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVV 190 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccC
Confidence 76554455667999999999876543333 344444544 3688 57899999985
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.52 E-value=2e-13 Score=87.88 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=67.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC--Cceeee-eeeEEEECCeEEEEEEEeCCCcccccc--------c---CC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR--------L---RP 74 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~---~~ 74 (127)
++|+++|.+|+|||||+|.+++........ +..+.. .......++ ..+.++||||-.+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999875432221 111111 111222333 4689999999654321 1 11
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLGRG 125 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~~lv~nK~Dl~ 125 (127)
....+.|++++|.++.+ .+-.. ...++.+.+... -.+++++.|++|..
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 22467899999999876 22221 344444444321 25788999998853
No 254
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.50 E-value=1e-13 Score=105.40 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=81.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCC-Cce-----------eeeee---eEEEE--------------C
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYI-PTV-----------FDNFS---ANVVA--------------E 52 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~-~~~-----------~~~~~---~~~~~--------------~ 52 (127)
...+..+|+++|..++|||||+++++...-. .... .+. +.+.. ..+.. +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4567889999999999999999999754311 0000 000 00000 01111 1
Q ss_pred CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....++++||||+.+|.......++.+|++|+|+|+...-..+.. ..|.. +.. .++|++++.||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHH-HHH--CCCCEEEEEECCccc
Confidence 2356789999999999988878888999999999999887665553 44444 333 478999999999986
No 255
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.49 E-value=2.5e-13 Score=97.61 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=72.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC-CC------------CCCc------------e------eeeee-eEEEEC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TD------------YIPT------------V------FDNFS-ANVVAE 52 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~~------------~~~~------------~------~~~~~-~~~~~~ 52 (127)
....++|+++|..++|||||+.+++...-. .. ...+ . +.+.. ......
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999753211 00 0000 0 00000 011122
Q ss_pred CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....+.++||||+++|.......+..+|++++|+|+.....-+.. +.+ ..+... ...|+++++||+|+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLV 173 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccc
Confidence 2345788999999988865444457899999999998765332221 111 112111 124789999999986
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=1.9e-13 Score=103.81 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=79.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCC-Cce-----------eeeee---eEEEEC--------CeEEEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYI-PTV-----------FDNFS---ANVVAE--------GTTVNLG 59 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~-~~~-----------~~~~~---~~~~~~--------~~~~~~~ 59 (127)
..+..+|+++|..++|||||+++|+...-. .... .+. +.+.. ..+..+ +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 456679999999999999999999863211 0000 000 00000 011111 2246789
Q ss_pred EEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 60 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.||||+.+|.......++.+|++|+|+|+...-..+. ...+..+.. .+.|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence 99999999988777888899999999999988755554 334444444 368999999999986
No 257
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=1.5e-13 Score=97.24 Aligned_cols=114 Identities=17% Similarity=0.045 Sum_probs=70.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CC------------CCCc--------e----------eeee-eeEEEECCeEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TD------------YIPT--------V----------FDNF-SANVVAEGTTV 56 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~-~~------------~~~~--------~----------~~~~-~~~~~~~~~~~ 56 (127)
++|+++|..++|||||+.+|+...-. .. ...+ . +.+. ...........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998743211 00 0000 0 0000 00111222335
Q ss_pred EEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++.++||||+++|.......+..+|++++|+|+.....-+.. +. ...+... ...++++++||+|+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~-~~~~~~~-~~~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RH-SYIASLL-GIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HH-HHHHHHc-CCCcEEEEEEecccc
Confidence 789999999998866555578899999999998765433332 22 2222221 223589999999985
No 258
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.47 E-value=2.2e-13 Score=101.01 Aligned_cols=118 Identities=15% Similarity=0.052 Sum_probs=73.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC-CC-----------CCCc----e---------------eeee-eeEEEEC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TD-----------YIPT----V---------------FDNF-SANVVAE 52 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~~-----------~~~~----~---------------~~~~-~~~~~~~ 52 (127)
....++|+++|..++|||||+++++...-. .. ...+ . +.+. .......
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 456789999999999999999999853211 10 0000 0 0000 0001112
Q ss_pred CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
....++.++||||+++|.......+..+|++++|+|+.....-+.. +....+... ...+++++.||+|+.
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLV 170 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccc
Confidence 2234678999999988765444567899999999999765433321 222222221 235689999999985
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.7e-13 Score=93.95 Aligned_cols=119 Identities=22% Similarity=0.190 Sum_probs=78.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc-ccc--------cCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNR--------LRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~ 74 (127)
+..++|+++|+||+|||||+|.|.+....- ....|+-+.....+.++| +++.+.||+|-.+ -.. ..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 456899999999999999999999865431 112233333344556665 6789999999644 111 112
Q ss_pred CcccCCcEEEEEEeC--CChHHHHHHHHHHHHHHhhhC-------CCCCEEEEeecCCCCCC
Q 033088 75 LSYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~~p~~lv~nK~Dl~~~ 127 (127)
..++.+|++++|+|+ ++-++-..+ .+.+....... ..-|++++.||+|+..+
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 346789999999998 443333332 34444443321 34789999999998754
No 260
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=8.6e-13 Score=96.24 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=79.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccc------cccCCCcc--
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDY------NRLRPLSY-- 77 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~-- 77 (127)
+..+++++|+||+|||||.|++.+.+..-.+.|-.+.+-+. ....++ .++++.|+||-... +...+.|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34579999999999999999999988877777766555433 333343 35899999996433 22333333
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+.|+++-|+|.+|.+..-.+ ...+.+ -+.|++++.|++|..
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl-tlQLlE-----~g~p~ilaLNm~D~A 121 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL-TLQLLE-----LGIPMILALNMIDEA 121 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH-HHHHHH-----cCCCeEEEeccHhhH
Confidence 357999999999997665554 222222 268899999999974
No 261
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=2.8e-13 Score=87.63 Aligned_cols=118 Identities=22% Similarity=0.298 Sum_probs=82.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCC---CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc-----cccCCCccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR 78 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~ 78 (127)
..-||+++|.+||||||+-.-++.+...- ....|+..+....... | ...+.+||++|++.+ .......|+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-G-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-G-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-h-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 45799999999999999987666443221 1122333332222122 2 256999999999843 336677899
Q ss_pred CCcEEEEEEeCCChHHHHHH--HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.++.++|||++..+--.+. .+..++.+.++.|+..++...+|.|+..
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 99999999999877543333 2566677788889999999999999853
No 262
>COG2262 HflX GTPases [General function prediction only]
Probab=99.43 E-value=2e-12 Score=89.61 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=81.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCccc---------ccccCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRP 74 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~ 74 (127)
.+....|.++|-.|+|||||+|++.+...... ...++-+...+.+.+.+ ...+.+-||.|--+ |+....
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 34578899999999999999999997554432 22233333345555554 34678899999422 222111
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
...++|+++.|+|++++.-...+ +.-...+.+.. .+.|+++|.||+|+..
T Consensus 268 -E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 268 -EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred -HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 23579999999999998665555 55555555542 6799999999999653
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.43 E-value=1.4e-12 Score=93.13 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=74.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC--CCCC---------------C------CCce------eeee-eeEEEECCe
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD---------------Y------IPTV------FDNF-SANVVAEGT 54 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~--~~~~---------------~------~~~~------~~~~-~~~~~~~~~ 54 (127)
....++|+++|..++|||||+.+++... .... . .... +.+. .........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999887521 1100 0 0000 0000 011122334
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH-------HHHHHHHHHHHHHhhhCCCCC-EEEEeecCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVP-VVLVGTKLGR 124 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl 124 (127)
...+.++|+||+.+|.......+..+|++++|+|+.... .-+. .+.+..+.. -++| ++++.||+|.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT--~eh~~~~~~--~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT--REHALLAFT--LGVKQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH--HHHHHHHHH--cCCCeEEEEEEcccc
Confidence 567999999999999777777788999999999988653 1122 233333333 3566 6799999995
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.43 E-value=1.3e-12 Score=93.33 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=75.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCC--CC-----------CC----------CCce------eeeee-eEEEECCe
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKF--PT-----------DY----------IPTV------FDNFS-ANVVAEGT 54 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~--~~-----------~~----------~~~~------~~~~~-~~~~~~~~ 54 (127)
....++++++|..++|||||+.+|+...- .. .. .... +.+.. ........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999988874211 00 00 0000 00000 01112333
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHH-------HHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
...+.+.|+||+++|.......+..+|++|+|+|+.+. .++ .. .+.+..+.. .++| +++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCC
Confidence 56789999999999988888889999999999999863 221 22 222323322 3564 78899999975
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.43 E-value=3.6e-13 Score=100.52 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=72.2
Q ss_pred ECCCCCcHHHHHHHHhcCCCC--C--CC--CCce----------eeee-eeEEEECCeEEEEEEEeCCCcccccccCCCc
Q 033088 14 VGDGAVGKTCMLICYTSNKFP--T--DY--IPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS 76 (127)
Q Consensus 14 iG~~~~GKssl~~~l~~~~~~--~--~~--~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 76 (127)
+|..++|||||+++|+...-. . .. ..+. +.+. ............+.+|||||+.++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 589999999999999643211 0 00 0011 0000 0011111224679999999998887777788
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.+.....+.. . ++..+.. .+.|+++++||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~-~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-T-VWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-H-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 9999999999999887655553 3 3334443 4789999999999863
No 266
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.7e-12 Score=91.68 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=89.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCC-------CC----------CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-------PT----------DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~-------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
++..++.|+---.-|||||..+++...- .+ +.--|+-......++.++..+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4567888888889999999999974211 10 011111111122333457779999999999999
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|...-.+-+.-|+++++|+|++.....+.. ..++..++. +..++.|+||+|++.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPS 191 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCC
Confidence 999999999999999999999998888887 777777776 788999999999975
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.41 E-value=4.2e-13 Score=81.63 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=63.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc----cccccCCCcccCCcEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSYRGADVFV 84 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 84 (127)
-||+++|+.|||||||+++|.+..... ..|... .+. =.++||||.. .+.........+||.++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i------~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAI------EYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc--Ccccee------Eec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 389999999999999999998755422 222211 111 1368999953 12222233346899999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++.|.+++.+.-. ..+...+ +.|++=|.||+|+.
T Consensus 69 ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 69 LLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLP 102 (143)
T ss_pred EEecCCCCCccCC--chhhccc-----CCCEEEEEECccCc
Confidence 9999998644222 1222222 46899999999997
No 268
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.40 E-value=1.1e-11 Score=89.12 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=87.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+.+.++|+.++|||.+++.|+++.+...+..+....+.. .....+....+.+-|.+-. ........- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 4568999999999999999999999998887665665555533 2333455566777776654 222222222 789999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++||.+++.++... ...++..... ..+|+++|++|+|+..
T Consensus 500 ~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDE 540 (625)
T ss_pred EEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccch
Confidence 999999999999987 6655555544 7899999999999864
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=1.6e-12 Score=97.86 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=78.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC-C-CCC-Cce-----------eeee-----eeEEEECCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-T-DYI-PTV-----------FDNF-----SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~-~~~-~~~-----------~~~~-----~~~~~~~~~~~~~~~~D~~g 65 (127)
.++..+|+++|..++|||||+.+++...-. . ... .+. +.+. ......++....+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 356778999999999999999999753211 0 000 000 0000 00111233467889999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+|.......++.+|++++|+|+......+.. ..|...... +.|.+++.||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhh
Confidence 999887778889999999999998876444442 344333332 56789999999975
No 270
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.38 E-value=2.5e-11 Score=82.11 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCccc----cc---ccCCCcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YN---RLRPLSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~---~~~~~~~~~ 79 (127)
--.++++|.|++|||||++.+.+...... |.-|+-....-.+.+++ .++|+.|+||.-. -+ ...-...+.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45799999999999999999998776544 44343333333444444 6799999998421 11 223455789
Q ss_pred CcEEEEEEeCCChHH
Q 033088 80 ADVFVLAFSLVSRAS 94 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s 94 (127)
||++++|.|+.....
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEecCCChh
Confidence 999999999986544
No 271
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.36 E-value=7e-12 Score=82.39 Aligned_cols=109 Identities=21% Similarity=0.154 Sum_probs=68.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.....|+++|.+|+|||||++.+....-........+. + .+. ......+.++||||.. ..+. ...+.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~-~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVV-TGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEE-ecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 45678999999999999999998864211111111111 1 111 1234568899999864 2221 23578999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-~lv~nK~Dl~ 125 (127)
++|.+....... ..++..+.. .+.|. ++|.||+|+.
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~--~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQV--HGFPRVMGVLTHLDLF 146 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHH--cCCCeEEEEEeccccC
Confidence 999876544333 345555544 35674 5599999985
No 272
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=82.66 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=76.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCCc---ccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 80 (127)
-.+-++|-|++|||||++.+...+..-. |.-|+-...--.+.++.- ..+.+=|+||.-+ .+.+--.| ++.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4567899999999999999998765432 222221111112223322 2388999999533 23333333 4679
Q ss_pred cEEEEEEeCCCh---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCC
Q 033088 81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRG 125 (127)
Q Consensus 81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~ 125 (127)
+..+||+|++.. ..++.+ +.+..+++.+. .+.|.++|+||+|++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 999999999987 777776 66666665543 678999999999984
No 273
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=4.7e-12 Score=79.41 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=45.9
Q ss_pred EEEEEeCCCccc----ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 033088 57 NLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122 (127)
Q Consensus 57 ~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~ 122 (127)
.+.++|+||-.. ...+...+++.+|++++|.+.....+-... ..+.+...... ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence 378999999643 234566778999999999999886655554 67777776643 3499999985
No 274
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=8.1e-12 Score=81.41 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=61.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC-C-ceeeee-eeEEEECCeEEEEEEEeCCCcccccc--------cC---C
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-P-TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR--------LR---P 74 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~---~ 74 (127)
++|+++|..|+||||++|.+++....+... . +..... ......++ ..+.++||||-.+... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876543321 1 111111 22334555 4688999999432211 11 1
Q ss_pred CcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
......|++++|+...... .-..+.+.+...+....- -.++|+.|+.|..
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADEL 129 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGG
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH-hHhhHHhhhcccc
Confidence 1235689999999988321 111212333333332222 2478888877643
No 275
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.32 E-value=1.1e-11 Score=85.14 Aligned_cols=80 Identities=21% Similarity=0.190 Sum_probs=54.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCC------CCCceeeeeeeE----------------EEECC-eEEEEEEEeCCCc-
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ- 66 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~------~~~~~~~~~~~~----------------~~~~~-~~~~~~~~D~~g~- 66 (127)
|.++|.+++|||||++++.+...... ..|+.+..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765422 223333222100 00122 3478999999997
Q ss_pred ---ccccccCCCc---ccCCcEEEEEEeCC
Q 033088 67 ---EDYNRLRPLS---YRGADVFVLAFSLV 90 (127)
Q Consensus 67 ---~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (127)
++++.+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455554454 89999999999997
No 276
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=4.7e-12 Score=87.96 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=60.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce---eeeeeeEEEECCeEEEEEEEeCCCcccccccC-----CCcc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-----PLSY 77 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~~ 77 (127)
..+++|+|+|++|+|||||+|.|.+-...++....+ +++.....+....--.+.+||+||........ ..-+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 357899999999999999999998644433222222 22222222222222348899999964322111 2235
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
...|.+|++.+. + |......+.+.+.+ -+.|+.+|-||+|.
T Consensus 113 ~~yD~fiii~s~--r--f~~ndv~La~~i~~--~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSE--R--FTENDVQLAKEIQR--MGKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESS--S----HHHHHHHHHHHH--TT-EEEEEE--HHH
T ss_pred cccCEEEEEeCC--C--CchhhHHHHHHHHH--cCCcEEEEEecccc
Confidence 678988887653 2 33332455666666 47789999999984
No 277
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=7.4e-12 Score=91.31 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC---------ce------eeeeee---EE---EECCeEEEEEEEe
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---------TV------FDNFSA---NV---VAEGTTVNLGLWD 62 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~---------~~------~~~~~~---~~---~~~~~~~~~~~~D 62 (127)
......++.++|.-..|||+|+..+.....+..+.. +. +...+. +. ..+++.+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 456788999999999999999999876544322111 11 001110 11 1146778899999
Q ss_pred CCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
|||+-+|.......++.+|++++|+|+...-.++. +++++..-+ .+.|+++|+||.|+
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHH
Confidence 99999999998899999999999999998888777 455544433 48999999999985
No 278
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=2.2e-11 Score=85.81 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=55.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CC-----Cceeeeee-eEE---------------EEC-CeEEEEEEEeCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YI-----PTVFDNFS-ANV---------------VAE-GTTVNLGLWDTA 64 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~-----~~~~~~~~-~~~---------------~~~-~~~~~~~~~D~~ 64 (127)
++||.++|.+++|||||+|++.+...... +. |+.+..+. ..+ ..+ .....+++||+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 36899999999999999999998766432 21 22222110 000 011 223679999999
Q ss_pred Cc----ccccccCCCc---ccCCcEEEEEEeCC
Q 033088 65 GQ----EDYNRLRPLS---YRGADVFVLAFSLV 90 (127)
Q Consensus 65 g~----~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (127)
|. +....+...+ ++.+|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 94 3344444455 78999999999996
No 279
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=6.9e-11 Score=79.96 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=67.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCC----------CCceeee-eeeEEEECCeEEEEEEEeCCCccc--------
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVFDN-FSANVVAEGTTVNLGLWDTAGQED-------- 68 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~-------- 68 (127)
.++|+++|++|+|||||+|.|++....... ..+.... ......-++..+.+.++||||-.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999986544331 0111111 122344467889999999999321
Q ss_pred ----------cc-------ccCCCcc--cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 69 ----------YN-------RLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 69 ----------~~-------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|. ...+..+ ...|++++.++.+.. ....+.-..++.+.+ .++++-|+.|+|.-.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~---~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK---RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT---TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc---cccEEeEEecccccC
Confidence 00 0111111 356899999997642 222222345555554 688999999999743
No 280
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=8.2e-12 Score=88.13 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCC-------CCCCCc------eeeeee---eEEEE---CCeEEEEEEEeC
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFP-------TDYIPT------VFDNFS---ANVVA---EGTTVNLGLWDT 63 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~-------~~~~~~------~~~~~~---~~~~~---~~~~~~~~~~D~ 63 (127)
+...+..++.|+---.-|||||..|++...-. +....+ .+.+.+ ....+ ++..+.+++.||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 34456678888888889999999999753211 000000 111111 11111 457899999999
Q ss_pred CCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||+-+|...-.+.+..|.+.++|+|++..-..+.+ .+.+..+.+ +..++-|+||+||+.
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~ 142 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPA 142 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCC
Confidence 99999998888889999999999999999888887 888888886 788999999999975
No 281
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.29 E-value=3.1e-11 Score=88.69 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=69.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC--CceeeeeeeEEEECCeEEEEEEEeCCCcccccc----------cCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----------LRP 74 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~ 74 (127)
..++|+++|.+|+||||++|.+++........ +.+..........++ ..+.++||||-..... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 35789999999999999999999875332211 111111111222333 5689999999654311 111
Q ss_pred Cccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCCCC
Q 033088 75 LSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~~lv~nK~Dl~~ 126 (127)
.++. ..|++++|..++.......- ..+++.+.+.+. --.++|+.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 47999999887643222121 345555544331 135889999988764
No 282
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=2.5e-11 Score=83.53 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHH----------HHHHHHHHHHHHhhhC--CCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS----------YENVLKKWIPELQHYS--PGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~--~~~p~~lv~nK~ 122 (127)
...+.++|.+||..-+..|.++|.+++++|||++++.-.. ..+. -.+.+.+.++. .+.+++|+.||.
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS-~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES-LKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH-HHHHHHHhcCcccccCcEEEEeecH
Confidence 3678999999999999999999999999999999875221 2222 23334443332 689999999999
Q ss_pred CC
Q 033088 123 GR 124 (127)
Q Consensus 123 Dl 124 (127)
||
T Consensus 273 DL 274 (354)
T KOG0082|consen 273 DL 274 (354)
T ss_pred HH
Confidence 97
No 283
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.8e-10 Score=82.30 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=87.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee-eeeEEEECC-eEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.+..=|+++|--.-|||||+..+...+..+.....++.+ ..+.+..+. ..-.+.|.|||||+-|..++..=..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 345678999999999999999999887765544333322 244555542 234688999999999999988878889999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|+++++.-..|.. +-+..++. -++|++++.||+|...
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCC
Confidence 999999987655554 22333333 5899999999999863
No 284
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.22 E-value=1.6e-10 Score=76.48 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=44.6
Q ss_pred EEEEEEeCCCcccc-------------cccCCCccc-CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 033088 56 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121 (127)
Q Consensus 56 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK 121 (127)
..+.++|+||-... ..+...|++ ..+++++|+|+...-.-... ..+.+.+.. .+.|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 56889999996421 223445566 45689999987654332232 344444544 57899999999
Q ss_pred CCCCC
Q 033088 122 LGRGT 126 (127)
Q Consensus 122 ~Dl~~ 126 (127)
+|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.19 E-value=1.3e-10 Score=89.54 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=67.1
Q ss_pred CcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECC--e---------E-----EEEEEEeCCCcccccccCCCcccCCc
Q 033088 19 VGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG--T---------T-----VNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 19 ~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~---------~-----~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
++||||+..+.+......-...++... ...+..+. + . -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999998776544222222111 11122210 0 0 12899999999999888777888999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++|+|+++.-.-+. ...+..+.. .++|+++++||+|+.
T Consensus 552 ivlLVVDa~~Gi~~qT--~e~I~~lk~--~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 552 LAVLVVDINEGFKPQT--IEAINILRQ--YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEEECcccCCHhH--HHHHHHHHH--cCCCEEEEEECCCCc
Confidence 9999999987322222 122233333 368999999999985
No 286
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.6e-10 Score=81.82 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=84.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee---eeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
+++.-|.++|--.-|||||+..|.+..........++. .|..... ++ -.+.|.||||+.-|..|+..=.+-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 35677899999999999999999887665432222211 2222322 34 468899999999999999888888999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++|+.+.|.-..+.+ +-++-.+. .++|+++..||+|.+.
T Consensus 228 vVLVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPG 267 (683)
T ss_pred EEEEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCC
Confidence 9999999987655554 22333333 6899999999999764
No 287
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.18 E-value=2.3e-10 Score=77.95 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=73.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCC---cccCCcE
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPL---SYRGADV 82 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~~~ 82 (127)
|-++|-|++|||||++.+...+..- .|.-|+-...--.+.... .-.+.+=|.||.-+ =..+-.. .++.|.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 4589999999999999998766542 333333222211222222 23588899999422 1122222 3567899
Q ss_pred EEEEEeCCChH---HHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRA---SYENVLKKWIPELQHYS---PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~ 125 (127)
.+.|+|++..+ ..++. ..+..+++.+. .+-|.+||+||+|+.
T Consensus 241 L~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred eEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 99999998644 24554 66666666654 578999999999954
No 288
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.2e-10 Score=86.84 Aligned_cols=118 Identities=19% Similarity=0.116 Sum_probs=85.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCC--CCC---CC-----CCce------eeeee-eEEEECCe-EEEEEEEeCCC
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT---DY-----IPTV------FDNFS-ANVVAEGT-TVNLGLWDTAG 65 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~--~~~---~~-----~~~~------~~~~~-~~~~~~~~-~~~~~~~D~~g 65 (127)
..++..+|.++|.-.+|||||..+++... ... .. .... +.+.. ......-+ .+.++++||||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 35678899999999999999999987421 110 00 0000 11111 11111122 47899999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+-+|...-...++-+|++++|+|+...-..+.- .-|....+. ++|.+++.||.|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~ 141 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRL 141 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccc
Confidence 999999999999999999999999988777774 666666654 89999999999975
No 289
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=1.6e-10 Score=84.74 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcccc-----cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.++.+.||||-... .......+..+|++++|+|.....+..+ ..+.+.+++...+.|+++|.||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 35678999997542 1122336899999999999887544444 34556665543346999999999985
No 290
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.16 E-value=6.5e-10 Score=79.77 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=64.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEE--CCeEEEEEEEeCCCcccccccCCCcccCC---
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA--EGTTVNLGLWDTAGQEDYNRLRPLSYRGA--- 80 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~--- 80 (127)
..-.|+|+|..++|||||+.+|.+.. ...++.+-.|.+. +.. .....++.+|-+.|...+..+.+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 45789999999999999999986532 3344555555332 111 12345799999988766666666555432
Q ss_pred -cEEEEEEeCCChHHHHHHHHHHHHHH
Q 033088 81 -DVFVLAFSLVSRASYENVLKKWIPEL 106 (127)
Q Consensus 81 -~~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (127)
-++|+|.|.+.+..+-+-+..|+..+
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 46889999998877654445555544
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.14 E-value=6.8e-10 Score=77.99 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=76.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC----CCC-------------CC----CCCceeeee--eeEEE---ECCeEEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP-------------TD----YIPTVFDNF--SANVV---AEGTTVNLGL 60 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~----~~~-------------~~----~~~~~~~~~--~~~~~---~~~~~~~~~~ 60 (127)
-.+-|.++|+.++|||||+++|.+. ... .. ...|++..+ ...+. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3678999999999999999999876 222 11 111222222 01122 2455678999
Q ss_pred EeCCCccc-----cccc------------------------CCCccc-CCcEEEEEE-eCC----ChHHHHHHHHHHHHH
Q 033088 61 WDTAGQED-----YNRL------------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPE 105 (127)
Q Consensus 61 ~D~~g~~~-----~~~~------------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 105 (127)
.||+|-.. +... .+..++ .+++.++|. |.+ .++.+..+..+++.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999432 1110 011234 788888887 664 245566677899999
Q ss_pred HhhhCCCCCEEEEeecCC
Q 033088 106 LQHYSPGVPVVLVGTKLG 123 (127)
Q Consensus 106 ~~~~~~~~p~~lv~nK~D 123 (127)
+++ -+.|++++.||+|
T Consensus 176 Lk~--~~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKE--LNKPFIILLNSTH 191 (492)
T ss_pred HHh--cCCCEEEEEECcC
Confidence 988 6899999999999
No 292
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.14 E-value=2.8e-10 Score=80.33 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=52.0
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCCh----------HHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLGR 124 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl 124 (127)
..+.++|++|+..-+..|.++|.+++++|||+++++- ..+.+.+..|-..+.... .+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 4679999999999999999999999999999998631 234444344444443322 68999999999985
No 293
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.13 E-value=5.2e-10 Score=76.08 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=65.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE---EEECCeEEEEEEEeCCCcccccccCCCcccCC---
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN---VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA--- 80 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~--- 80 (127)
..-+|+++|+.++|||||+.++.+.. ...+..+-.|.+. -.......++.+|-+.|.-....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999998754 2233333344332 11223346788998888755555544444433
Q ss_pred -cEEEEEEeCCChHHHHHHHHHHHHHHhhh
Q 033088 81 -DVFVLAFSLVSRASYENVLKKWIPELQHY 109 (127)
Q Consensus 81 -~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (127)
..+|++.|++++..+-+.+..|..-++++
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 46889999999966655557777665543
No 294
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.12 E-value=1.2e-10 Score=77.49 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+++.-|+++|-.|||||||++||...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 46788999999999999999998643
No 295
>PRK13768 GTPase; Provisional
Probab=99.11 E-value=1.1e-10 Score=77.98 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEEeCCCccccc---ccCCCcc---cC--CcEEEEEEeCCChHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 57 NLGLWDTAGQEDYN---RLRPLSY---RG--ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 57 ~~~~~D~~g~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+.+||+||+.+.. ..+..++ .. ++++++++|.......... ...|+........+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 58899999986632 2322222 22 8999999999654333222 1334433332235799999999999854
No 296
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=9.1e-10 Score=76.75 Aligned_cols=121 Identities=14% Similarity=0.075 Sum_probs=73.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--CCCC---------------C--C-----CCce-----eeee-eeEEEECCe
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT---------------D--Y-----IPTV-----FDNF-SANVVAEGT 54 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~---------------~--~-----~~~~-----~~~~-~~~~~~~~~ 54 (127)
....++++++|...+|||||+-+|+.. ...+ + + +.+- +.+. .......-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456899999999999999999888642 1110 0 0 0000 0011 001111222
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH---H--HHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---S--YENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+.+.+.|+||+.+|-.....-..+||+.|+|+|+.+.+ . .....++..-..+. ..--.++++.||.|+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~ 159 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVS 159 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccc
Confidence 357999999999888776666778899999999998763 1 11111222222222 12234889999999853
No 297
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.3e-10 Score=79.47 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=84.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc--CCC--------------CCCCC----Cceeeee-eeEEEECCeEEEEEEEeC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKF--------------PTDYI----PTVFDNF-SANVVAEGTTVNLGLWDT 63 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~--~~~--------------~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~D~ 63 (127)
-.++..++||--|.+|||||.+.++- +.. ..... ...+... ++.+..+...+.+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 45778899999999999999988752 111 00000 0011111 234445556678999999
Q ss_pred CCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||+++|..-.-..+..+|.+++|+|+...-.-+. .++++-++- .++||+-+.||.|.+.
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDREG 147 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeecccccc
Confidence 9999998877778889999999999988765555 355555555 5899999999999763
No 298
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.08 E-value=1.9e-11 Score=80.85 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=35.6
Q ss_pred EEEEEeCCCcccccccCCCcc--------cCCcEEEEEEeCCChHHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCCCC
Q 033088 57 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 57 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~~lv~nK~Dl~~ 126 (127)
.+.++|||||.++...+...- ...-++++++|...-.+.......++-.+.- ..-+.|.+.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 688999999987544333221 3445788888876433222222333333222 124899999999999864
No 299
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.07 E-value=5.7e-10 Score=68.31 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=36.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (127)
+++++|.+|+|||||+|++..............+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876643211111122233344444 4789999995
No 300
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1e-09 Score=71.99 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=73.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCccccccc---CCCcccCCcEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL---RPLSYRGADVFV 84 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~~~~i 84 (127)
.+|+++|-..|||||+..-.++. ..+......+.+.+ ..-.+.+.-+.+++||.|||-.+..- ....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 55999999999999987555443 32221111111111 11112234578999999999876442 234589999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhh---hCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQH---YSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~~lv~nK~Dl~ 125 (127)
+|+|..+ .+.++..++...+.+ .+|++.+-++..|.|--
T Consensus 107 fvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 107 FVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 9999754 344444555555544 45899999999999853
No 301
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.01 E-value=4.9e-09 Score=72.18 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=73.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC----------CCCceeeee-eeEEEECCeEEEEEEEeCCCccccc----
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---- 70 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~---- 70 (127)
...++|.++|++|+|||||+|.|++...... ..+++.... ...+.-++..+.+.+.||||--++-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4579999999999999999999997633322 122332222 2234446788999999999932210
Q ss_pred ---------------------ccCCC-ccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 71 ---------------------RLRPL-SYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 71 ---------------------~~~~~-~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
...+. .+. .+|++++....+. ..+..+.-..++.+.+ .+.++-|+.|+|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK---RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc---ccCeeeeeeccccC
Confidence 01111 222 4678888877653 3333333355555554 57788899999974
No 302
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.01 E-value=1.8e-09 Score=77.56 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=73.9
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCC---CCCCC--CCceeeeeeeE------------E--EEC------------
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDY--IPTVFDNFSAN------------V--VAE------------ 52 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~---~~~~~--~~~~~~~~~~~------------~--~~~------------ 52 (127)
..+..++|.++|--..|||||+..|.... +.++. --|..--|... . ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45678999999999999999999998531 11111 01110000000 0 000
Q ss_pred C----eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCCh-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 53 G----TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 53 ~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+ ....+.+.|+||+++|......-+..+|++++|+|+... ...+.. + .+..+... .-.+++++.||+|+.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-e-hl~i~~~l-gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-E-HLAAVEIM-KLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-H-HHHHHHHc-CCCcEEEEEecccccC
Confidence 0 013688999999998876655567789999999999864 233332 2 22232221 2246899999999864
No 303
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=2.4e-09 Score=75.84 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=79.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC--CCCCCC--------Cc----eeeee-eeEEEECCeEEEEEEEeCCCccccccc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYI--------PT----VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~--~~~~~~--------~~----~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~ 72 (127)
..+|+|+---.-|||||+..++..+ |.+... .- .+.+. .+..-++.+...+++.||||+.+|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4678888888999999999998642 221100 00 01111 122222334478999999999999999
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
-...+.=+|++++++|+....-.+. +..++..-. .+.+-+||.||+|.++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPD 134 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCC
Confidence 9999999999999999987655544 333333322 4788899999999865
No 304
>PTZ00258 GTP-binding protein; Provisional
Probab=98.99 E-value=4.5e-09 Score=73.89 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=52.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeeeeEEEECC---------------eEEEEEEEeCCCcccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEG---------------TTVNLGLWDTAGQEDY 69 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~ 69 (127)
...++|.++|.+++|||||+|.+.+........|..+ ....-.+.... ...++++.|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 3467999999999999999999977654433222221 11111122111 1235899999995321
Q ss_pred ----cccC---CCcccCCcEEEEEEeCC
Q 033088 70 ----NRLR---PLSYRGADVFVLAFSLV 90 (127)
Q Consensus 70 ----~~~~---~~~~~~~~~~i~v~d~~ 90 (127)
..+. -..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111 12357899999999973
No 305
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.98 E-value=1.6e-09 Score=77.20 Aligned_cols=121 Identities=13% Similarity=-0.024 Sum_probs=78.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCc--------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS-------- 76 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-------- 76 (127)
......++++|-+++|||||++.+.........-+.++.. -..-.++.+-..+++.||||.-+-.......
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTks-L~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKL-LLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccch-hhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4567789999999999999988777654432222211110 1111224445789999999953321111111
Q ss_pred c-cCCcEEEEEEeCCCh--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCCC
Q 033088 77 Y-RGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 77 ~-~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~~ 127 (127)
+ .--.+++++.|++.. -|..+- -.++..++....+-|+++|+||+|+-.|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCc
Confidence 1 123567888888753 455554 6788888888889999999999998765
No 306
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.7e-09 Score=73.78 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=76.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc--eeeeeeeEEEEC------Ce-------------------------
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNFSANVVAE------GT------------------------- 54 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~--~~~~~~~~~~~~------~~------------------------- 54 (127)
..=|+++|+...||||+++.++...++.....+ +.+.+...+..+ +.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 345899999999999999999998887432211 112222221111 10
Q ss_pred --------EEEEEEEeCCCcc-----------cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCE
Q 033088 55 --------TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115 (127)
Q Consensus 55 --------~~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 115 (127)
--.+.++||||.- +|....+.|...+|.|+++||....+--.+. ++.+..++.+ .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 1247899999942 2444556667899999999998755444443 6777777774 3447
Q ss_pred EEEeecCCCCC
Q 033088 116 VLVGTKLGRGT 126 (127)
Q Consensus 116 ~lv~nK~Dl~~ 126 (127)
-||.||+|...
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 78899999864
No 307
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=3.1e-09 Score=73.98 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=50.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeeeeEEEECC---------------eEEEEEEEeCCCcccc---
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEG---------------TTVNLGLWDTAGQEDY--- 69 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~--- 69 (127)
++|.++|.+++|||||+|++.+........| ++-....-.+.+.. ....+++.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998764322222 21111111112111 1135899999995321
Q ss_pred -ccc---CCCcccCCcEEEEEEeCC
Q 033088 70 -NRL---RPLSYRGADVFVLAFSLV 90 (127)
Q Consensus 70 -~~~---~~~~~~~~~~~i~v~d~~ 90 (127)
..+ .-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 122357899999999984
No 308
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2e-08 Score=69.52 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=72.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC---------CCCceeeee-eeEEEECCeEEEEEEEeCCCcccc-------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------- 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~------- 69 (127)
-.+.+.++|++|.|||||+|.|+...+... ...+..... ...+.-++..+.+.+.||||--+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999887644322 011112211 223344677899999999993221
Q ss_pred ------------------cccCCCccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 70 ------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 70 ------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
....+..+. .+|++++.+..+.. .+..+.-..++.+.. .+.++-|+.|+|.-.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK---KVNLIPVIAKADTLT 172 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc---cccccceeeccccCC
Confidence 111122233 57888888886543 233333355555554 677888899999753
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.93 E-value=1.8e-09 Score=72.74 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=49.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeeeeEEEECCe---------------EEEEEEEeCCCcccc----c
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDY----N 70 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~----~ 70 (127)
+.++|.+++|||||+|++.+........|..+ ......+.+.+. ...++++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 47899999999999999998766433222221 111112222211 235899999995321 1
Q ss_pred ccCCCc---ccCCcEEEEEEeCC
Q 033088 71 RLRPLS---YRGADVFVLAFSLV 90 (127)
Q Consensus 71 ~~~~~~---~~~~~~~i~v~d~~ 90 (127)
.+...+ ++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111222 57899999999863
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=6.3e-09 Score=65.78 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=37.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g 65 (127)
..++++++|.+|+|||||+|++.+...... .+..+.+. ...+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 357999999999999999999998655322 12222222 22333332 478999998
No 311
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.92 E-value=5.6e-09 Score=65.90 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=38.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
...++++++|.+++|||||++++.+..+... ....+++. ...+.++ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998776422 22222222 2223333 34789999994
No 312
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=6.8e-09 Score=64.60 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=35.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g 65 (127)
...+++++|.+|+|||||+|++.+...... .+..+.+.. ..+..++ .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999997654322 112222221 1222222 367999998
No 313
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.91 E-value=9.2e-10 Score=79.12 Aligned_cols=109 Identities=27% Similarity=0.408 Sum_probs=87.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
-..+|+-|+|..++|||+|+++|+.+.|.+. ..+.+..|+.++..++....+-+.|-+|... .+|...+|++||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 3578999999999999999999999999876 4556678888878888777888889777322 246678999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTK 121 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK 121 (127)
||.+.+..+++.+ ..+...+... ...+|+++++++
T Consensus 102 vf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtq 138 (749)
T KOG0705|consen 102 VFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQ 138 (749)
T ss_pred EEEeccccCHHHH-HHHHhhcccccccccchHHhhcCc
Confidence 9999999999998 6666655432 267888888876
No 314
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.2e-08 Score=63.40 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=38.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g 65 (127)
...+++++|.+++|||||++++.+... ....++.+.+.... +..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 467899999999999999999996543 33344444443323 22222 588999998
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=1.8e-08 Score=66.16 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC---------CCCceeeee-eeEEEECCeEEEEEEEeCCCcccc---cc--
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY---NR-- 71 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~---~~-- 71 (127)
-.|+|.++|++|.|||||+|.++....... +..|++... ...+.-++...++.+.||||-.+. ..
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 369999999999999999999876433221 111222111 123334567788999999993221 11
Q ss_pred ---------------------cCCCccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 72 ---------------------LRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 72 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
.++..+. .++++++.+..+ ..++..+.-++++.+.+ -+.++-|+.|+|-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDt 196 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeeccc
Confidence 1122222 356777766654 44444443455666655 3557778888884
No 316
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.84 E-value=1.7e-08 Score=68.31 Aligned_cols=56 Identities=23% Similarity=0.163 Sum_probs=38.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
..++++++|.+|+|||||+|++.+........ ..+.+. ...+..+. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999999766433211 112122 22333332 4689999997
No 317
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.83 E-value=1.1e-08 Score=68.13 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=49.5
Q ss_pred ccccccCCCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 67 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++..+.+.+++++|++++|||+.++. ++..+ ++|+..+.. .++|+++|+||+||..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCC
Confidence 567778888999999999999999876 88887 999987765 6899999999999953
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.80 E-value=3.6e-08 Score=67.11 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=38.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~ 67 (127)
..++++++|.+|+|||||+|++.+.+.... .+..+.+. ...+..+. .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 568999999999999999999998764322 11222222 22333333 47799999973
No 319
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.78 E-value=3.4e-08 Score=78.08 Aligned_cols=111 Identities=23% Similarity=0.164 Sum_probs=65.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCC----C--CceeeeeeeEEEECCeEEEEEEEeCCCccc--------ccccCCCc
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDY----I--PTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 76 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 76 (127)
.+|||++|+||||++.+- +..++-.. . ...+.+......+.+.. .++|++|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCE---EEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999766 33333211 1 11122222333344433 4999999421 12234333
Q ss_pred c---------cCCcEEEEEEeCCCh-----HHHH---HHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 77 Y---------RGADVFVLAFSLVSR-----ASYE---NVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 77 ~---------~~~~~~i~v~d~~~~-----~s~~---~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+ +-.|++|+++|+.+- +... ...+..+.++.+.. -.+||.|+.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 3 358999999998642 1111 11244445554443 589999999999985
No 320
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3e-08 Score=73.73 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=81.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc----eeeeeeeEEEE---------CC----eEEEEEEEeCCCccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVVA---------EG----TTVNLGLWDTAGQED 68 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~----~~~~~~~~~~~---------~~----~~~~~~~~D~~g~~~ 68 (127)
-+..-|||+|--.+|||-|+..+.+.+........ ++.+|.....+ ++ .--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 35567999999999999999999876554332221 22222111100 11 112377899999999
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
|...+......||.+|+|+|+-..-..+.+ .-+..++. .+.|++|.+||+|.
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~--rktpFivALNKiDR 604 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRM--RKTPFIVALNKIDR 604 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchh--HHHHHHHh--cCCCeEEeehhhhh
Confidence 999999999999999999999776544543 44455555 57999999999996
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.75 E-value=5.9e-09 Score=61.69 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=61.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc----cccccCCCcccCCcEEE
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSYRGADVFV 84 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 84 (127)
-|+.++|+.|+|||||.+.+.+...... .|...+ .+... ..||||.. .+..-......++|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve------~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVE------FNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc--ccceee------ccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 3799999999999999999987654322 222222 22111 56888842 22222233457889999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|-++.++++.-.. -+... -..|++=+.+|.||..
T Consensus 70 ~v~~and~~s~f~p--~f~~~-----~~k~vIgvVTK~DLae 104 (148)
T COG4917 70 YVHAANDPESRFPP--GFLDI-----GVKKVIGVVTKADLAE 104 (148)
T ss_pred eeecccCccccCCc--ccccc-----cccceEEEEecccccc
Confidence 99998887542221 11111 1345888889999874
No 322
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.75 E-value=3e-08 Score=65.86 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH-------HHHHHHHHHHHHHhhhC-----CCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYS-----PGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~ 122 (127)
.++++++|.+||.+-+..|.++|.+..++|||...++-. +-+.+ ++-+..++... ..+.++|+.||.
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL-~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRL-QEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHH-HHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 467999999999999999999999999999999876411 11111 33333333321 458899999999
Q ss_pred CCC
Q 033088 123 GRG 125 (127)
Q Consensus 123 Dl~ 125 (127)
|+-
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 973
No 323
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2.3e-07 Score=63.98 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=71.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCC---------------------------------CCCCCceeeeeeeEEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP---------------------------------TDYIPTVFDNFSANVV 50 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 50 (127)
+....++++-.|.-.-|||||+=||+.+.-. .+....++.+..+..
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy- 80 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY- 80 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee-
Confidence 3456789999999999999999998754210 000010111111111
Q ss_pred ECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 51 AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 51 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.-..-+|.+-||||+++|-.....=...||+.|+++|+...-.-+.-...++..+- .=..++|..||+||.+
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvd 153 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVD 153 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccc
Confidence 111234688999999999976555556679999999998543222221112222221 2244889999999964
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=4.6e-08 Score=62.68 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=35.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCC-------CCCCceeeee-eeEEEECCeEEEEEEEeCCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-------DYIPTVFDNF-SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g 65 (127)
..++.++|.+|+|||||+|.+++..... ......+++. ...+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4689999999999999999999754311 1111112221 22333333 468999999
No 325
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.68 E-value=2.2e-08 Score=66.81 Aligned_cols=114 Identities=17% Similarity=0.054 Sum_probs=69.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeeeeEEEECCeEEEEEEEeCCCc----------ccccccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~ 74 (127)
..+..++++|.+++|||||++.+....-...... ..+.+...+.. ...-.+.+.|.||. .++..+.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f--~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF--HVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee--eccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 4578999999999999999999987655433332 33332222211 11235779999992 22334445
Q ss_pred CcccCCc---EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 75 LSYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 75 ~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.|+.+-+ -+++.+|++-+ ++......+..+.+ .++|+.+|.||||..
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--NNVPMTSVFTKCDKQ 261 (320)
T ss_pred HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--cCCCeEEeeehhhhh
Confidence 5554333 34455565543 22222344455555 589999999999964
No 326
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.67 E-value=1.4e-07 Score=65.34 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=40.0
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+.+.+.||+|..+-... ....+|.++++.+.......+.... .+-+ ..-++|.||+|+..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E----~aDIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIME----LADLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhh----hhheEEeehhcccc
Confidence 367889999997643322 4667999999987666666655421 1111 12389999999753
No 327
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.67 E-value=8.7e-08 Score=66.20 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=39.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
...++.++|-+++|||||+|+|.+...... .+..+.+- ...+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 457899999999999999999998776322 22223333 233444443 789999995
No 328
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=1.6e-07 Score=58.35 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 65 (127)
....+++++|.+|+|||||+|.+.+..... ...+..+.. ......+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~-~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS-QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc-eEEEEec---CCEEEEECCC
Confidence 356789999999999999999999765322 212211111 1222332 2478999998
No 329
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.8e-07 Score=64.51 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=71.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC---------CceeeeeeeE------EEECCeEEEEEEEeCCCccccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI---------PTVFDNFSAN------VVAEGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~D~~g~~~~~ 70 (127)
+..+++-++|--.||||+|..++..-......+ -|..--++.- ..-.++++++.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999997543322111 1111111110 1114567889999999997654
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
.....-..-.|..++|+|+...-.-+.+.-.++-++.. + ..++|.||+|+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c--~--klvvvinkid~ 134 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC--K--KLVVVINKIDV 134 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc--c--ceEEEEecccc
Confidence 33333334568899999998765555552233333322 2 37888888875
No 330
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.62 E-value=7.2e-08 Score=60.09 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=33.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-CC--C----ceeeeeeeEEEECCeEEEEEEEeCCCcccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTD-YI--P----TVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
-.++++|++|||||||+|.+....-... .. . ..+++....+...... .+.||||-..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 4689999999999999999997632211 00 0 1112223334443333 48999995443
No 331
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.61 E-value=1.4e-06 Score=57.85 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=62.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccc---cCCCcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNR---LRPLSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~---~~~~~~~~ 79 (127)
--+++++|-|.+|||||+..+....... .|.-|+-+-..-.+.+++. .+++.|.||.-. -+. ......+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence 4689999999999999999988765443 3443333333334555654 589999999422 111 12234578
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHH
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPE 105 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~ 105 (127)
+|.+++|.|++..+.-....+.-++.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~ 165 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEA 165 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHH
Confidence 99999999998765444333444443
No 332
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=2.4e-06 Score=56.24 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=51.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--CCCCCCC--Cce-eeee-eeEEEECCeEEEEEEEeCCCccccccc------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYI--PTV-FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------ 72 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~------ 72 (127)
..+..-|.|+|++++|||+|+|++++. .|..... +++ +.-. ..... .+....+.++||+|......-
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 345677899999999999999999988 6653322 211 1111 11111 123467999999997543321
Q ss_pred CCCcccC--CcEEEEEEeCCCh
Q 033088 73 RPLSYRG--ADVFVLAFSLVSR 92 (127)
Q Consensus 73 ~~~~~~~--~~~~i~v~d~~~~ 92 (127)
....+.. ++++|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 1222333 7777776665543
No 333
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.5e-07 Score=68.96 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=81.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCC--CC------CCCCceeeeeee-------EEEECCeEEEEEEEeCCCcc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKF--PT------DYIPTVFDNFSA-------NVVAEGTTVNLGLWDTAGQE 67 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~--~~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~g~~ 67 (127)
++.+...+++++---.-|||||+..+.-.+- .. .+..+.+++..+ .+..-.+.+.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 5667788999999999999999988863211 11 111112222222 22233456889999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
+|........+-+|+.++.+|+...-..+.. ..+++.-. .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhhh
Confidence 9999999999999999999999876544443 22222111 35678999999993
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.55 E-value=2e-07 Score=64.99 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~ 33 (127)
++++|.+|+|||||+|+|+....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 78999999999999999997543
No 335
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=2.1e-07 Score=65.00 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++|+|++|+|||||+|.|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999654
No 336
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.53 E-value=7.6e-07 Score=61.04 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+.+.+.||+|...... .....+|.++++-........+.. ...+ .+.|.+++.||+|+..
T Consensus 126 g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~~~~el~~~----~~~l----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV---DIANMADTFVVVTIPGTGDDLQGI----KAGL----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCEEEEeCCCCchhhh---HHHHhhceEEEEecCCccHHHHHH----HHHH----hhhccEEEEEcccccc
Confidence 46788999998542221 245677888887544333333332 2323 2467799999999863
No 337
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.3e-06 Score=62.32 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=73.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC--------------------CCC-----------CCCCCceeeeeeeEEEECCe
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN--------------------KFP-----------TDYIPTVFDNFSANVVAEGT 54 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~--------------------~~~-----------~~~~~~~~~~~~~~~~~~~~ 54 (127)
...+.++++|--.+|||||+-+++.. +.. ++....+... .....++..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~-v~~~~fes~ 253 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMD-VKTTWFESK 253 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEE-eeeEEEecC
Confidence 46789999999999999999877532 110 0011111111 112233444
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHH------HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV------LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+.+.|.||+.+|-.....-...+|+.++|+|++.. .|+.- .++....++.. .-..++|+.||.|+..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVS 329 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccC
Confidence 56799999999988877666667789999999998743 22211 12222223222 2345889999999853
No 338
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.8e-07 Score=65.49 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=72.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee--------------------------------------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-------------------------------------- 47 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 47 (127)
....||+|.|..+.||||++|.++..+.-+........-+..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 356899999999999999999987654433211111000000
Q ss_pred ------EEEE-CC-e---EEEEEEEeCCCcc---cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCC
Q 033088 48 ------NVVA-EG-T---TVNLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV 113 (127)
Q Consensus 48 ------~~~~-~~-~---~~~~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 113 (127)
.+.. ++ . .-.+.+.|.||-. ....-...+..++|++|+|.+..+.....+ ..++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence 0000 11 0 0135677888853 233344566789999999999887655555 4555555553 55
Q ss_pred CEEEEeecCCCCC
Q 033088 114 PVVLVGTKLGRGT 126 (127)
Q Consensus 114 p~~lv~nK~Dl~~ 126 (127)
.++++-||.|...
T Consensus 263 niFIlnnkwDasa 275 (749)
T KOG0448|consen 263 NIFILNNKWDASA 275 (749)
T ss_pred cEEEEechhhhhc
Confidence 5888889988753
No 339
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=2.1e-08 Score=65.62 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=49.6
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC----------hHHHHHHHHHHHHHHhhhC--CCCCEEEEeec
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHYS--PGVPVVLVGTK 121 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK 121 (127)
..+.+.+.|.+|+..-+..|.++|++.-.+++++.++. .....+. ..+...+-..+ .+.+++++.||
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence 34567799999998888899999998888877766542 2222332 33333343333 68999999999
Q ss_pred CCCC
Q 033088 122 LGRG 125 (127)
Q Consensus 122 ~Dl~ 125 (127)
.|+-
T Consensus 276 kDlL 279 (359)
T KOG0085|consen 276 KDLL 279 (359)
T ss_pred hhhh
Confidence 9985
No 340
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.4e-07 Score=61.64 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=53.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc------eeeeeeeEEE-------EC----CeEEEEEEEeCCCc----
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT------VFDNFSANVV-------AE----GTTVNLGLWDTAGQ---- 66 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~------~~~~~~~~~~-------~~----~~~~~~~~~D~~g~---- 66 (127)
.+++-|+|.|++|||||.|.+....-....-|. .+..+-.... .. -....++++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987643222221 1211100000 01 12467899998873
Q ss_pred ccccccCCCc---ccCCcEEEEEEeCC
Q 033088 67 EDYNRLRPLS---YRGADVFVLAFSLV 90 (127)
Q Consensus 67 ~~~~~~~~~~---~~~~~~~i~v~d~~ 90 (127)
++=+.+-.+| +|++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3344444445 57899999999975
No 341
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.48 E-value=6.9e-06 Score=51.04 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=39.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (127)
...||.+.|++||||||++.++.+.--... -+.+-.+...+.-+++..-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 468999999999999999988874221111 23344445555667777888888877
No 342
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.45 E-value=9e-07 Score=61.94 Aligned_cols=82 Identities=17% Similarity=0.071 Sum_probs=52.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCC-CCCceeeeeeeEEEECC---------------eEEEEEEEeCCCccc---
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKF-PTD-YIPTVFDNFSANVVAEG---------------TTVNLGLWDTAGQED--- 68 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~--- 68 (127)
+|+.++|.+++|||||++.+.+... ... |..++.....-.+.+.. ....+++.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998775 332 32221111111222211 124678999999533
Q ss_pred -ccccCCC---cccCCcEEEEEEeCC
Q 033088 69 -YNRLRPL---SYRGADVFVLAFSLV 90 (127)
Q Consensus 69 -~~~~~~~---~~~~~~~~i~v~d~~ 90 (127)
-...-.. .++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2222222 367899999999974
No 343
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=5.6e-07 Score=59.99 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.++++|++|+|||||+|.+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 367899999999999999999754
No 344
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.43 E-value=1.1e-06 Score=54.87 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcccccccCC--------CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
....+.|++|-.+...... ...-..+.++.++|..+-.....-...+..+++. . =+++.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a-d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A-DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C-CEEEEecccC
Confidence 4567889999653222211 1234578999999976543322111444455543 1 3569999996
No 345
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=6.1e-07 Score=60.70 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=73.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc---CCCCC---CCC----C----ceeeee-eeEEEECCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS---NKFPT---DYI----P----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~---~~~~~---~~~----~----~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
....++|..+|--.-|||||...+.. ..+.. .|. . ..+.+. ...+.+.-..-.+...|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 34679999999999999999876642 11100 000 0 011111 112223222335678899999998
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-PVVLVGTKLGRGT 126 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~~lv~nK~Dl~~ 126 (127)
-.....=..+.|+.|+|+++++....+.. +. +-..++ -.+ .++++.||+|+.+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTr-EH-iLlarq--vGvp~ivvflnK~Dmvd 142 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EH-ILLARQ--VGVPYIVVFLNKVDMVD 142 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcch-hh-hhhhhh--cCCcEEEEEEecccccC
Confidence 76544455678999999999987666663 22 222222 245 4788999999875
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.41 E-value=6.3e-07 Score=62.90 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++.++|.+|+|||||+|++++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999753
No 347
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.39 E-value=6e-07 Score=60.93 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=34.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC------CC-CCceeeeeeeEEEECCeEEEEEEEeCCCcccc
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPT------DY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
-.+++|++|+|||||+|++....-.. .. ...-+++...-+.+.+..+ +.||||-..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCcc
Confidence 57899999999999999998632221 11 0111223333444543333 8999996543
No 348
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.38 E-value=8.2e-07 Score=60.76 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC--CceeeeeeeEEEECCeEEEEEEEeCCCcc-c--------ccccC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQE-D--------YNRLR 73 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~--------~~~~~ 73 (127)
.+...-|.++|-.++|||||++.+......+... .|...+......-.+. .+-+.||.|-- + |+...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHH
Confidence 3445679999999999999999998655554422 2333222222122232 46678998832 1 11111
Q ss_pred CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~~lv~nK~Dl~~ 126 (127)
. ...++|.++-|.|++++.--... +..+.-++... +..| ++=|-||+|.+.
T Consensus 253 e-eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 253 E-EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred H-HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 1 24579999999999998654443 55556565542 3333 556778888764
No 349
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.36 E-value=7.3e-07 Score=60.76 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=35.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC-CCc---ee---eeeeeEEEECCeEEEEEEEeCCCccccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPT---VF---DNFSANVVAEGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~-~~~---~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 70 (127)
..++++|++|+|||||+|.+.+....... .+. .+ +.....+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999875443211 110 01 111222333322 2489999986553
No 350
>PRK00098 GTPase RsgA; Reviewed
Probab=98.35 E-value=1.4e-06 Score=59.74 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
..++++|++|+|||||+|.+++...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4588999999999999999987543
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2.9e-06 Score=62.15 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+.++-++++|++|+|||||+..+...-.... +....-......++.-++.+.++|. +...+.. ..+-+|.++
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVl 138 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVL 138 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeE
Confidence 45678889999999999999987764321111 1111111113356667899999983 3333322 345689999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
+.+|..-.-....+ +++..+..+ +.| ++=|.|+.|+-
T Consensus 139 LlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlf 176 (1077)
T COG5192 139 LLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccc
Confidence 99998766555554 455555443 344 67788988874
No 352
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.30 E-value=4.2e-06 Score=57.62 Aligned_cols=84 Identities=21% Similarity=0.154 Sum_probs=54.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEE---------------CCeEEEEEEEeCCCcc---
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA---------------EGTTVNLGLWDTAGQE--- 67 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~~~D~~g~~--- 67 (127)
..+|+-|+|.+++|||||+|.+.+....+..-|..+.+- ..++.+ ......++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 567999999999999999999998776655444322111 111111 1235779999988832
Q ss_pred -cccccCCC---cccCCcEEEEEEeCC
Q 033088 68 -DYNRLRPL---SYRGADVFVLAFSLV 90 (127)
Q Consensus 68 -~~~~~~~~---~~~~~~~~i~v~d~~ 90 (127)
.=..+-.. -++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 22223333 357899999888863
No 353
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=2e-06 Score=60.49 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=34.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCceeeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
..++.++|.+|+|||||+|+++....... ..+..+++. ...+.+++. ..++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 34799999999999999999986432111 111112222 222333332 369999995
No 354
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.5e-06 Score=58.91 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC------------------CCCce-----eeeee-eEEEE----------C
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD------------------YIPTV-----FDNFS-ANVVA----------E 52 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~------------------~~~~~-----~~~~~-~~~~~----------~ 52 (127)
..++++++|...+|||||+--+.++..... ..+.+ +.+.. ..+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 468999999999999999876654322111 01111 00000 00011 1
Q ss_pred CeEEEEEEEeCCCcccccccCCCccc--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGTP 127 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~~ 127 (127)
...--+.+.|.+|+.+|.....+-+. ..|..++|+++...-.+.. ++.+-.+.. -++|++++.+|.|+..+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccc
Confidence 12234789999999999876555443 3577888888776654444 455555544 48999999999999754
No 355
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.18 E-value=9.1e-06 Score=41.73 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCcEEEEEEeCCCh--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 033088 79 GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLG 123 (127)
Q Consensus 79 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~D 123 (127)
-.++++|++|.+.. -+...- -.+++.++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 35889999999864 345553 688888888889999999999998
No 356
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=4.1e-06 Score=57.12 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred CCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+..+.++|.+++|+|+.++. ++..+ ++|+..+.. .++|+++|+||+||..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLD 123 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCC
Confidence 44588999999999999887 77776 788887766 5799999999999954
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=7e-06 Score=58.66 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCcccccccC----CC--cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+.+.++||+|........ .. ...+.+-+++|.|+...+...+ ..+.+.+. -.+--+|.||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCC
Confidence 4678999999965432111 11 1235678999999875433222 22233221 13467888998853
No 358
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=7.8e-06 Score=59.18 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--------CCCCCceee------eeee-EEE----------------ECCe
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--------TDYIPTVFD------NFSA-NVV----------------AEGT 54 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--------~~~~~~~~~------~~~~-~~~----------------~~~~ 54 (127)
....++.++.--.-|||||...+....-. ..+..|..+ +.+. .+. .++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34567778888889999999888642110 011111111 1111 111 1445
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
.+-++++|.||+-+|.+.-...++-+|+.++|+|..+.-..+.- .-+-+.+.+ .+.-+++.||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhH
Confidence 68899999999999999999999999999999999888777763 444444544 4556788899885
No 359
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.4e-05 Score=63.12 Aligned_cols=112 Identities=22% Similarity=0.143 Sum_probs=60.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCC--CC-CCCcee--eeeeeEEEECCeEEEEEEEeCCCccc--------ccccCCCc-
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFP--TD-YIPTVF--DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS- 76 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~- 76 (127)
.+|||++|+||||++..-- .+|+ +. ...... .+......+.+. -.++||+|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 5799999999999984322 2222 11 001111 122222333333 44889988422 12233322
Q ss_pred --------ccCCcEEEEEEeCCCh-----HHH-HHH--HHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 77 --------YRGADVFVLAFSLVSR-----ASY-ENV--LKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 --------~~~~~~~i~v~d~~~~-----~s~-~~~--~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
.+..|+||+..|+++- ..- ..+ ++.-+.++... .-..|+.|++||.|+-.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3568999999998642 111 111 12223333332 25899999999999854
No 360
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.09 E-value=3.9e-06 Score=51.32 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=34.4
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++.+|++++|+|+.++.+..+ ..+.+.+.....+.|+++|+||+|+..
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCC
Confidence 4678999999999988755442 233333332225789999999999853
No 361
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=3.5e-05 Score=52.08 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=42.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-----eeEEEECCeEEEEEEEeCCCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~~g~ 66 (127)
-.++|+-+|..|.|||||+..+++.+|.....+-..... .+...-.+..+++.+.||.|-
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 368999999999999999999999988754332221111 111222356788999999993
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=98.08 E-value=7.4e-06 Score=56.16 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=39.5
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
...++|++++|+|+.++.......++|+..+.. .++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC
Confidence 458999999999998876655555888887765 579999999999985
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=1.1e-05 Score=56.58 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+..+.++|.+++|+|+.++. +...+ +.|+..+.. .++|+++|+||+||..
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVS 134 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCC
Confidence 344578999999999998765 44454 777776644 6899999999999853
No 364
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.04 E-value=4.7e-05 Score=55.88 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=42.2
Q ss_pred EEEEEEeCCCcc-------------cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 033088 56 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122 (127)
Q Consensus 56 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~ 122 (127)
-+..+.|+||.- ....+.++|+.+.++||+|+--.+-+.-......+...+.. .+...++|.||.
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeec
Confidence 346788999932 23456677889999999997533211111111233333322 466789999999
Q ss_pred CCCC
Q 033088 123 GRGT 126 (127)
Q Consensus 123 Dl~~ 126 (127)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9853
No 365
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.04 E-value=7.2e-06 Score=50.98 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=33.8
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.++++|++++|.|+.++..-.. ..+.+.+.....+.|+++|.||+|+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcC
Confidence 4678999999999988632211 33444444333568999999999985
No 366
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=3.4e-05 Score=46.43 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
...+++.|++|+|||++++.+.+.-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45689999999999999999987543
No 367
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=6.6e-06 Score=60.43 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=75.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCC-----CCCC-CCceeee----eeeEEEE-------CCeEEEEEEEeCCCcccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-----PTDY-IPTVFDN----FSANVVA-------EGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~-----~~~~-~~~~~~~----~~~~~~~-------~~~~~~~~~~D~~g~~~~ 69 (127)
+..+|-+.----+||||+-++.+...- .+.. ..+..+. -.+-+++ .-..+.++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 344555555567999999998764211 0000 0111000 0011111 112578999999999999
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.-.-...++--|++|++++......-+.. .-|.++-+. ++|.+.+.||.|.-
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry---~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY---NVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc---CCCeEEEEehhhhc
Confidence 98888899999999999998877655554 566665554 89999999999964
No 368
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.00 E-value=4.6e-06 Score=53.42 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=37.4
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++.++..+++.+|++++|+|+.+... .|...+.....+.|+++|+||+|+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLL 74 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcC
Confidence 57778888999999999999987531 1222222223568999999999985
No 369
>PRK08118 topology modulation protein; Reviewed
Probab=97.99 E-value=6.7e-06 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-||+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988754
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=6.7e-06 Score=48.70 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.|+|.|++||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 371
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.96 E-value=3.7e-06 Score=52.13 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=35.1
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+.++.++++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhC
Confidence 455667788999999999977543222 223333322 368999999999985
No 372
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.93 E-value=4.9e-05 Score=46.38 Aligned_cols=106 Identities=15% Similarity=0.045 Sum_probs=61.6
Q ss_pred EEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC
Q 033088 12 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91 (127)
Q Consensus 12 ~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (127)
+.-|.+|+|||++...+...-.... ..+...+.-. ......+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 4557899999998765543211100 1111000000 0001116788999987532 22245788999999999875
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 92 RASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
..++... ...++.+.+.....++.++.|+.+-
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 4555554 4555555544456678899999864
No 373
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.92 E-value=1e-05 Score=51.49 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.||+|+|++||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 374
>PRK07261 topology modulation protein; Provisional
Probab=97.91 E-value=1.1e-05 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+|+|+|++|||||||+..+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 375
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.90 E-value=1.9e-05 Score=50.61 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..=|+++|++|||||||+++++..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999875
No 376
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.90 E-value=2.3e-05 Score=50.98 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..+..-++|+|++|||||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345667889999999999999999754
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.90 E-value=2.6e-05 Score=52.88 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccccC------------CCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 033088 55 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTK 121 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK 121 (127)
.+.+.++||+|........ ...-...|.+++|.|.+... .+..+ ..+.+.+ -+--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEEc
Confidence 3678899999975432111 11122478999999997542 22222 2222211 135788899
Q ss_pred CCCC
Q 033088 122 LGRG 125 (127)
Q Consensus 122 ~Dl~ 125 (127)
.|..
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 8864
No 378
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.5e-06 Score=61.47 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC------CCCCCce----------eeee-eeEEEECCeEEEEEEEeCCCcccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP------TDYIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~------~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
+..+|-++.--.+||||...|++.-.-. ...-.|. +.+. +..+..+=+..+++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4567778888889999999988642110 0001111 1111 123344555678999999999999
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
+-....+++--|+++.|||.+.....+.+ ..|.+.=+. ++|-..++||.|.
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk 166 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDK 166 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhh
Confidence 99999999999999999999987777776 777655443 6888888888885
No 379
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00011 Score=49.13 Aligned_cols=114 Identities=15% Similarity=0.230 Sum_probs=66.4
Q ss_pred eeEEEEECCCCC--cHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEE--EEEEEeCCCcccccccCCCcccCCcEE
Q 033088 8 FIKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTV--NLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 8 ~~ki~iiG~~~~--GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
+.-++++|.+|+ ||-+|++++....|.....+...+.+.- .+++.+-+ .+.+.-.+--..+........+...++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg-wtid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG-WTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeec-eEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 346789999999 9999999999888876544443333311 12222211 122221111111111111223445789
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
++|||++....+..+ +.|+.--.- .... ++.+|||.|..
T Consensus 83 vmvfdlse~s~l~al-qdwl~htdi--nsfdillcignkvdrv 122 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDAL-QDWLPHTDI--NSFDILLCIGNKVDRV 122 (418)
T ss_pred EEEEeccchhhhHHH-Hhhcccccc--ccchhheecccccccc
Confidence 999999998888887 888764322 1222 45677998864
No 380
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.86 E-value=2.8e-05 Score=56.18 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=38.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~ 66 (127)
.+.|-++|-+|+||||++|.|.+.+-..- ..|.+.+- -.++.+.. .+-++||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 58899999999999999999998876533 33333322 22344444 3569999995
No 381
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.7e-05 Score=52.51 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988764
No 382
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=1.6e-05 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
..=+++.||+|+|||||++.++...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998765
No 383
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.81 E-value=1.7e-05 Score=48.25 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
|+++|++||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 384
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.81 E-value=0.00015 Score=48.59 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=61.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc----cc---cCCCcccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NR---LRPLSYRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~---~~~~~~~~~ 80 (127)
-+|-++|-+.+|||||+..+.+...+. .+.-|.-.+..-...++ .-++++.|.||.-+- +. .-....+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc--ccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 378899999999999999888765432 23333222222222233 357999999994321 11 222345789
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHH
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPEL 106 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (127)
+.+++|.|+-.+-+...+.+.-++-+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~ 163 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGF 163 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcc
Confidence 99999999988877666655544443
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=5e-05 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.++++|+.|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999987753
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.80 E-value=4.9e-05 Score=47.95 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (127)
||++.|++|+|||||+.+++..--.. .-..+-.+.....-++...-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999999987532111 11122223333334555566666666
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.80 E-value=3e-05 Score=50.37 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=23.6
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
|.+....-|.|.|++|||||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4456677899999999999999998864
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.80 E-value=2e-05 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++|+|++|||||||+|-+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999987643
No 389
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.78 E-value=0.00018 Score=41.47 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=49.0
Q ss_pred EEEEC-CCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 11 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 11 i~iiG-~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
+.+.| ..|+||||+...+...--... .+... +..+. .+.+.++|+|+...... ...+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~------~d~d~-~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL------IDLDP-QYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE------EeCCC-CCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccC
Confidence 45666 569999998866543211111 11111 11111 16788999998753322 2677889999999986
Q ss_pred CChHHHHHHHHHHHH
Q 033088 90 VSRASYENVLKKWIP 104 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~ 104 (127)
+ ..+...+ ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 5566665 55554
No 390
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.78 E-value=2.5e-05 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||+..+-.-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999887653
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.78 E-value=0.00025 Score=39.83 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=44.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccccccc-CCCcccCCcEEEEEEeC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFSL 89 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 89 (127)
+++.|..|+|||++...+...--... .+...++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999987764321111 1112222 5779999887543321 13456678999999887
Q ss_pred CCh
Q 033088 90 VSR 92 (127)
Q Consensus 90 ~~~ 92 (127)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 643
No 392
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.76 E-value=3.7e-05 Score=40.34 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
..+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987753
No 393
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.76 E-value=2.1e-05 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 394
>PRK12288 GTPase RsgA; Reviewed
Probab=97.75 E-value=7.6e-05 Score=52.27 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=39.3
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..++|.+++|++.....++..+ +.|+..+.. .++|.++|+||+||..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCC
Confidence 3569999999999887888887 888876654 5799999999999954
No 395
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.74 E-value=1.8e-05 Score=55.66 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=42.1
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.++|..+...+.+.++++++|+|+.+.. ..|.+.+.+...+.|+++|+||+|+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl 103 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhC
Confidence 5678888888889999999999987643 33555555544578999999999985
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.73 E-value=0.00011 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=19.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.+..++++|.+|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999987664
No 397
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.73 E-value=0.0022 Score=46.02 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=69.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC-----------------CCCC----CCCCceeeee----eeEEEE-CCeEEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN-----------------KFPT----DYIPTVFDNF----SANVVA-EGTTVNLGLWD 62 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~-----------------~~~~----~~~~~~~~~~----~~~~~~-~~~~~~~~~~D 62 (127)
+=+-++||-.+|||||+.||... ..++ ...-|++..| ...+.+ ++..+++.+.|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 45789999999999999999632 1111 1112222222 123344 46778999999
Q ss_pred CCCcc-----cc------cccCCCc------------------cc--CCcEEEEEEeCC----ChHHHHHHHHHHHHHHh
Q 033088 63 TAGQE-----DY------NRLRPLS------------------YR--GADVFVLAFSLV----SRASYENVLKKWIPELQ 107 (127)
Q Consensus 63 ~~g~~-----~~------~~~~~~~------------------~~--~~~~~i~v~d~~----~~~s~~~~~~~~~~~~~ 107 (127)
|.|-- .| +-....+ ++ .+=++++.-|.+ .++++..+.++-..+++
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 98821 11 0000001 12 223556666654 46788888888888998
Q ss_pred hhCCCCCEEEEeecCC
Q 033088 108 HYSPGVPVVLVGTKLG 123 (127)
Q Consensus 108 ~~~~~~p~~lv~nK~D 123 (127)
. -+.|++++.|-.+
T Consensus 178 ~--igKPFvillNs~~ 191 (492)
T PF09547_consen 178 E--IGKPFVILLNSTK 191 (492)
T ss_pred H--hCCCEEEEEeCCC
Confidence 8 5789999998654
No 398
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.71 E-value=5.1e-05 Score=48.04 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
....-+.++|.+|||||||+.++...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 44557899999999999999988743
No 399
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00023 Score=50.72 Aligned_cols=110 Identities=19% Similarity=0.080 Sum_probs=69.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCC---CCCCC--ceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 11 CVTVGDGAVGKTCMLICYTSNKFP---TDYIP--TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
|...|----|||||+..+.+..-. +.... |+...+.+ .+.....+.+.|.||++++-...-.-+...|..++
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y---~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY---RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe---ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 455677778999999988764322 21111 11112211 12223378999999999887766666778899999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|++.++.-..+.. +.+..+.-. .-...++|+||+|+.+
T Consensus 80 vV~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d 117 (447)
T COG3276 80 VVAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVD 117 (447)
T ss_pred EEeCccCcchhhH--HHHHHHHhc-CCCceEEEEecccccc
Confidence 9999766555543 222222221 2244799999999875
No 400
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.70 E-value=3.9e-05 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 401
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.69 E-value=0.00012 Score=50.08 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=58.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc---c-------------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE---D------------- 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---~------------- 68 (127)
..+...++++|++|.|||+++++|...... ..... ...+.+.....|... .
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED------------AERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC------------CccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 346678999999999999999999975432 21111 111233333333311 1
Q ss_pred --------ccccCCCcccCCcEEEEEEeCCCh---HHHHHHHHHHHHHHhhhC--CCCCEEEEeec
Q 033088 69 --------YNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS--PGVPVVLVGTK 121 (127)
Q Consensus 69 --------~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK 121 (127)
........++...+=++++|--.. .+..+- +..+..++... -++|++.+|++
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q-r~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ-REFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH-HHHHHHHHHHhhccCCCeEEeccH
Confidence 111222446778888888884321 122222 44555555443 47999999985
No 402
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.69 E-value=4.8e-05 Score=40.81 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988764
No 403
>PRK06217 hypothetical protein; Validated
Probab=97.68 E-value=4.4e-05 Score=48.67 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 404
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.68 E-value=5.8e-05 Score=53.06 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=40.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (127)
...+.+-|+|-+++||||++|++...+.... ..|..+ ..-..+..+. .+.+.|+||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhheeccC---CceeccCCce
Confidence 4578999999999999999999998877543 233322 2233344443 4779999995
No 405
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.67 E-value=4.7e-05 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+..++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999877643
No 406
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.67 E-value=0.00084 Score=44.40 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=32.0
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
...+.+|.+|+|.|.+- .++..+ ++..+...+. .=-++.+|.||.|-.
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 34578999999999874 455554 4444433332 125799999999843
No 407
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.66 E-value=4.9e-05 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 408
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.65 E-value=4.5e-05 Score=53.02 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++++||+|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998764
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.00011 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=18.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 033088 8 FIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.-.|+++||.|+||||-+-.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 5678999999999998776554
No 410
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00022 Score=49.57 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=70.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC----------CCCCCCC----Cceeeeeee-EEEECCeEEEEEEEeCCCccccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN----------KFPTDYI----PTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~----------~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~ 70 (127)
...++|--||--.-|||||...+..- +|.+-.. ...+.+... .+.+.-..-..-=.||||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 45688888999999999998766421 1111000 011111111 12222222234457999999987
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..-..=-.+.|+.|+|+..+|..-.+.- +.+-..++. .--.++++.||.|+.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr--EHlLLArQV-GV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR--EHLLLARQV-GVKHIVVFINKVDLV 183 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH--HHHHHHHHc-CCceEEEEEeccccc
Confidence 6554455678999999999998766663 333333331 223488999999987
No 411
>PRK07429 phosphoribulokinase; Provisional
Probab=97.64 E-value=7.7e-05 Score=51.84 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
|.+...+++-|.|.|++|||||||.+.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 667778899999999999999999988864
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.64 E-value=4.9e-05 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999988764
No 413
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.64 E-value=5.8e-05 Score=48.24 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.63 E-value=0.00012 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 415
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=6.6e-05 Score=44.76 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT 35 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~ 35 (127)
-.++++|++|+|||+++..++..-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765443
No 416
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.62 E-value=5.4e-05 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 417
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.62 E-value=6.4e-05 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
++++.++|+.|+|||||++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999988753
No 418
>PRK14530 adenylate kinase; Provisional
Probab=97.62 E-value=5.8e-05 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+|+|+|++||||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 419
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.62 E-value=6.9e-05 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+++|+++|++||||||+..++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 420
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=6.4e-05 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999998875
No 421
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.59 E-value=0.00021 Score=48.90 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCC------CCCCceeeeeeeEEEECCeEEEEEEEeCCCc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT------DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (127)
...+.+.|+|-||+|||||+|.+....... ...|..+......+.+.+.. .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 357899999999999999999876432221 12222222223335554443 3789999994
No 422
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.59 E-value=9.6e-05 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+...|.|.|++|||||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988865
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.58 E-value=7.1e-05 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033088 9 IKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~ 29 (127)
-.++++|++|||||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999876
No 424
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.58 E-value=0.00039 Score=49.10 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=73.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc----------------eeeeeee-------EEEE----------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------------VFDNFSA-------NVVA---------- 51 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~----------------~~~~~~~-------~~~~---------- 51 (127)
....+.+...|--..|||||+-.+..++..+..-.+ ....+.. ....
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456788999999999999998877655443221111 0011100 0000
Q ss_pred ---CCeEEEEEEEeCCCccccccc--CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 52 ---EGTTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 52 ---~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+...--+.+.|+.|++.|... +-.+=.+.|..++++.+++..+.-. .+.+-.+.. -+.|++++.||+|+-.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCc
Confidence 111234789999999987542 2233357899999999988755444 233333222 4799999999999853
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00027 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
--+.++|+.|+||||.+..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4688999999999999987764
No 426
>PRK03839 putative kinase; Provisional
Probab=97.57 E-value=7.7e-05 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+|+++|.+||||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 427
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.56 E-value=6.9e-05 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988753
No 428
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00038 Score=47.50 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
+...|-|.|.||+|||||+..|.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHH
Confidence 45678899999999999998875
No 429
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.55 E-value=9.3e-05 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 033088 8 FIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.-.++++|++|||||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876
No 430
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.54 E-value=8.2e-05 Score=47.29 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033088 9 IKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~ 29 (127)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999887
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.54 E-value=7.4e-05 Score=44.40 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999888654
No 432
>PRK14532 adenylate kinase; Provisional
Probab=97.53 E-value=8.9e-05 Score=47.37 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|+++|++||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 433
>PRK14531 adenylate kinase; Provisional
Probab=97.53 E-value=9.5e-05 Score=47.15 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+.+|+++|++||||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988854
No 434
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.53 E-value=9.6e-05 Score=47.19 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
=.++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3689999999999999998865
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.52 E-value=0.00042 Score=40.31 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=56.4
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHH
Q 033088 15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 94 (127)
Q Consensus 15 G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 94 (127)
+..|+||||+...+...-.........-.+. ..+. ...+.+.|+|+..... ....+..+|.++++.+.+ ..+
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~----d~~~-~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s 78 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDL----DLQF-GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPS 78 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC----CCCC-CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHH
Confidence 5678999998765542211110111110000 0000 0168899998865432 234678899999998865 556
Q ss_pred HHHHHHHHHHHHhhhC-C-CCCEEEEeec
Q 033088 95 YENVLKKWIPELQHYS-P-GVPVVLVGTK 121 (127)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~-~~p~~lv~nK 121 (127)
...+ ..+++.+++.. + ...+.+|+|+
T Consensus 79 ~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 79 IRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 6665 67777766643 3 4567788875
No 436
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=9e-05 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 478999999999999998764
No 437
>PRK08233 hypothetical protein; Provisional
Probab=97.50 E-value=0.00012 Score=46.28 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..-|.|.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366788999999999999998753
No 438
>PRK13949 shikimate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|+++|++||||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988764
No 439
>PRK02496 adk adenylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=46.73 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+++++|++||||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.--++++|++|||||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999988764
No 441
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0001 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++++||+||||||++..+.+-
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999988763
No 442
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.48 E-value=0.00011 Score=47.36 Aligned_cols=20 Identities=20% Similarity=0.121 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
|.|.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998865
No 443
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00013 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.6
Q ss_pred eeEEEEECCCCCcHHHHHHHH
Q 033088 8 FIKCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l 28 (127)
.--.+++||+|||||||+..|
T Consensus 33 ~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred CceEEEECCCCcCHHHHHHHH
Confidence 344689999999999999766
No 444
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.47 E-value=0.00011 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...+.|-+.|++|||||+|+.+++.
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHH
Confidence 3358999999999999999988753
No 445
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.47 E-value=0.0001 Score=47.16 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+|+++|++||||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 446
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00056 Score=47.26 Aligned_cols=119 Identities=12% Similarity=0.101 Sum_probs=66.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC---CCCCC----------CCCce------e---eeee--eEEEEC----CeEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN---KFPTD----------YIPTV------F---DNFS--ANVVAE----GTTVN 57 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~---~~~~~----------~~~~~------~---~~~~--~~~~~~----~~~~~ 57 (127)
+..++|-++|--.-|||||+..+.+- ++.++ |..+. + ..|. ..+..- .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 57899999999999999999988531 11110 00000 0 0000 001111 12346
Q ss_pred EEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.|.|.||++-.....-.=..-.|+.++|++.+.+-.-... .+.+-.+.-. .--.++++-||+||.+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceec
Confidence 88999999986544322222345889999998754222222 2333333221 1234889999999864
No 447
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=0.0001 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999864
No 448
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=5.6e-05 Score=50.58 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=54.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee--EEEECCeEEEEEEEeCCCcccccccCCCc-----ccC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--NVVAEGTTVNLGLWDTAGQEDYNRLRPLS-----YRG 79 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~~ 79 (127)
....|++.|.. |||+++++++...-. ...++..-+|.+ ....++..-..++|+.+|..........- ++.
T Consensus 44 ~E~~I~~~Gn~--~~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNG--GKTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCC--ceeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 46778888875 458888888865433 335665555544 33333233347899999976554433222 232
Q ss_pred CcEEEEEEeCCChHHHHHHHHHH
Q 033088 80 ADVFVLAFSLVSRASYENVLKKW 102 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~ 102 (127)
=.+|++.|++++..+....+..
T Consensus 121 -~slIL~LDls~p~~~W~t~E~~ 142 (363)
T KOG3929|consen 121 -FSLILVLDLSKPNDLWPTMENL 142 (363)
T ss_pred -hhheeeeecCChHHHHHHHHHH
Confidence 3467888999887654333433
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.45 E-value=0.00045 Score=44.66 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~ 32 (127)
+++.|++||||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999877643
No 450
>PLN02674 adenylate kinase
Probab=97.45 E-value=0.00012 Score=48.84 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....+|+++|++||||+|+..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 451
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.45 E-value=0.00012 Score=46.40 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
|+++|++||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998865
No 452
>PLN03025 replication factor C subunit; Provisional
Probab=97.44 E-value=0.0005 Score=47.65 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
..+++.|++|+||||++..+...-+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999999998876543
No 453
>PRK06547 hypothetical protein; Provisional
Probab=97.44 E-value=0.00018 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.....|+|.|.+||||||+.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678888899999999999998653
No 454
>PRK04195 replication factor C large subunit; Provisional
Probab=97.44 E-value=0.00068 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.-.+++.|++|+|||++++.+++.-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998743
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.43 E-value=0.00012 Score=44.81 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|.|+|+.+||||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 456
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.43 E-value=0.00012 Score=47.68 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|+|+|++||||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00019 Score=50.50 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEE----EEeCCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLG----LWDTAG 65 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~D~~g 65 (127)
+++++|.+|+|||||++.+.+......-.-..................+. ++|+||
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG 256 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPG 256 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCc
No 458
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.43 E-value=0.00011 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999987653
No 459
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.00022 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.+.++|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368899999999999999888643
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.42 E-value=0.00016 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998653
No 461
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.41 E-value=0.00012 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=16.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...-.+++.|++|+|||+|++++..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999997753
No 462
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.41 E-value=0.00017 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 463
>PLN02200 adenylate kinase family protein
Probab=97.41 E-value=0.00022 Score=47.33 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.++.|+++|++||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.40 E-value=0.00018 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.-.++++|++|||||||++.+++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999888643
No 465
>PF13173 AAA_14: AAA domain
Probab=97.40 E-value=0.00017 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
-+++.|+.+||||||+.++...-.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999886544
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.39 E-value=0.00019 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.39 E-value=0.00021 Score=50.02 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=23.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP 34 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~ 34 (127)
...+|+|.|+.|||||||++.++..-..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 3578999999999999999999875433
No 468
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.38 E-value=0.00021 Score=46.50 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.....+.++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999998753
No 469
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00019 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 470
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00016 Score=44.59 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....+|++.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999873
No 471
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00018 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998864
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.37 E-value=0.0002 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 473
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.37 E-value=0.00025 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+..-|++.|.+||||||+.+.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999987753
No 474
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.37 E-value=0.00019 Score=45.99 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 475
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.37 E-value=0.00021 Score=46.54 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 476
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.36 E-value=0.00021 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 477
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00018 Score=47.56 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-|+++|++|+|||||+..+-.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999987765
No 478
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00023 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|||||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.35 E-value=0.00088 Score=46.77 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=26.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF 42 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~ 42 (127)
...+|+|.|+.|||||||++.++..-......-+.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE 194 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVE 194 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec
Confidence 367899999999999999999886544333333333
No 480
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00023 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|+.|+|||||++.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988864
No 481
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.35 E-value=0.00031 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
=.++++|++|||||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999887643
No 482
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.34 E-value=0.00023 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 483
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.34 E-value=0.00023 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 484
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.34 E-value=0.00019 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
|.|.|++|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999988864
No 485
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.34 E-value=0.00034 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 486
>PF05729 NACHT: NACHT domain
Probab=97.33 E-value=0.0002 Score=44.29 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++|.|++|+|||+++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988753
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.33 E-value=0.00023 Score=44.99 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+|+++|++|+||||+...+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999998874
No 488
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.33 E-value=9.5e-05 Score=50.21 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=37.1
Q ss_pred CCcc-cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 64 AGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 64 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|||. .........++.+|++++|+|+..+.+..+ ..+.+.+ .+.|+++|.||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccC
Confidence 5543 333444567889999999999976543322 1222223 257999999999985
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.33 E-value=0.00035 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998753
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.33 E-value=0.00091 Score=40.59 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
--+++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998753
No 491
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.33 E-value=0.00022 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.33 E-value=0.00032 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999987753
No 493
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.33 E-value=0.00038 Score=43.57 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999888654
No 494
>PHA00729 NTP-binding motif containing protein
Probab=97.33 E-value=0.00026 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...++++.|++|+|||+|+.++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988754
No 495
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.32 E-value=0.00024 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998643
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.32 E-value=0.00029 Score=46.51 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..+.+-+.+.|++|||||||++.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999998764
No 497
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.32 E-value=0.00031 Score=49.59 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=35.6
Q ss_pred EEEEEEeCCCcccccccCCCcc--cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
-.+.++|++|+++|....-.=+ .-.|..++++-..-.- ..-. .+.+...-. -++|+++|.+|+|+.
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmT-KEHLgLALa--L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMT-KEHLGLALA--LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eecc-HHhhhhhhh--hcCcEEEEEEeeccC
Confidence 3478999999999865432111 2345556655543221 1111 111111111 368888888888875
No 498
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.32 E-value=0.00034 Score=45.73 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
=.+.++|++|+|||||++.+.+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999988653
No 499
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00025 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988864
No 500
>PRK14528 adenylate kinase; Provisional
Probab=97.31 E-value=0.00025 Score=45.38 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+|+++|++||||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
Done!